AutoCloner

Multiple sequence alignment - TraesCS7B01G425300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G425300	chr7B	100.000	2648	0	0	1	2648	694193764	694196411	0.000000e+00	4891.0
1	TraesCS7B01G425300	chr7B	96.748	1814	33	6	837	2648	684969987	684971776	0.000000e+00	3000.0
2	TraesCS7B01G425300	chr7B	95.764	1204	23	1	835	2038	697803912	697802737	0.000000e+00	1916.0
3	TraesCS7B01G425300	chr7B	93.548	775	31	8	72	839	684969272	684970034	0.000000e+00	1136.0
4	TraesCS7B01G425300	chr7B	92.247	761	37	4	79	839	697804601	697803863	0.000000e+00	1059.0
5	TraesCS7B01G425300	chr7B	95.114	614	13	7	2037	2648	697802577	697801979	0.000000e+00	952.0
6	TraesCS7B01G425300	chr7B	78.746	1021	175	29	835	1829	697119884	697118880	0.000000e+00	645.0
7	TraesCS7B01G425300	chr7B	78.033	1088	193	37	835	1897	697423219	697424285	0.000000e+00	643.0
8	TraesCS7B01G425300	chr7B	77.768	1084	199	28	835	1897	695501912	695500850	1.730000e-176	628.0
9	TraesCS7B01G425300	chr7B	79.801	906	136	20	835	1724	698871761	698872635	1.350000e-172	616.0
10	TraesCS7B01G425300	chr7B	84.422	398	49	5	454	839	684954092	684953696	1.920000e-101	379.0
11	TraesCS7B01G425300	chr7B	77.918	634	114	14	1278	1897	695493834	695493213	3.220000e-99	372.0
12	TraesCS7B01G425300	chr7B	82.298	322	55	2	424	744	693258623	693258303	7.220000e-71	278.0
13	TraesCS7B01G425300	chr7B	80.660	212	27	10	1921	2126	697559627	697559830	4.570000e-33	152.0
14	TraesCS7B01G425300	chr7B	94.915	59	3	0	79	137	684932621	684932679	2.810000e-15	93.5
15	TraesCS7B01G425300	chr7B	100.000	50	0	0	790	839	694194598	694194647	2.810000e-15	93.5
16	TraesCS7B01G425300	chr7B	96.226	53	2	0	123	175	697371744	697371796	1.310000e-13	87.9
17	TraesCS7B01G425300	chr7A	96.335	1064	37	2	835	1897	699922261	699923323	0.000000e+00	1748.0
18	TraesCS7B01G425300	chr7A	87.340	624	33	17	229	839	699921720	699922310	0.000000e+00	673.0
19	TraesCS7B01G425300	chr7A	83.033	778	56	34	1895	2648	699923414	699924139	1.030000e-178	636.0
20	TraesCS7B01G425300	chr7A	81.609	435	69	6	416	839	700160750	700160316	1.510000e-92	350.0
21	TraesCS7B01G425300	chr7A	80.388	464	81	8	382	839	700091929	700091470	7.020000e-91	344.0
22	TraesCS7B01G425300	chr7A	80.493	446	72	9	407	839	700074331	700073888	7.070000e-86	327.0
23	TraesCS7B01G425300	chr7A	84.871	271	31	1	1519	1779	700073251	700072981	5.620000e-67	265.0
24	TraesCS7B01G425300	chr7D	88.661	1023	78	13	909	1897	609648366	609649384	0.000000e+00	1212.0
25	TraesCS7B01G425300	chr7D	77.463	1482	256	45	445	1897	610651447	610652879	0.000000e+00	815.0
26	TraesCS7B01G425300	chr7D	76.838	1537	281	49	406	1897	600282114	600283620	0.000000e+00	797.0
27	TraesCS7B01G425300	chr7D	85.316	395	35	13	1895	2269	609649477	609649868	1.150000e-103	387.0
28	TraesCS7B01G425300	chr7D	81.149	435	68	9	416	838	608727517	608727949	1.170000e-88	337.0
29	TraesCS7B01G425300	chrUn	81.790	324	53	5	424	744	83447761	83447441	1.560000e-67	267.0
30	TraesCS7B01G425300	chrUn	78.864	317	52	9	1468	1784	373725041	373724740	1.610000e-47	200.0
31	TraesCS7B01G425300	chrUn	94.915	59	3	0	79	137	344350607	344350549	2.810000e-15	93.5
32	TraesCS7B01G425300	chr6B	82.156	269	27	6	2224	2491	715747652	715747900	7.430000e-51	211.0
33	TraesCS7B01G425300	chr2A	93.590	78	4	1	3	79	62390265	62390188	5.990000e-22	115.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G425300	chr7B	694193764	694196411	2647	False	2492.25	4891	100.000000	1	2648	2	chr7B.!!$F7	2647
1	TraesCS7B01G425300	chr7B	684969272	684971776	2504	False	2068.00	3000	95.148000	72	2648	2	chr7B.!!$F6	2576
2	TraesCS7B01G425300	chr7B	697801979	697804601	2622	True	1309.00	1916	94.375000	79	2648	3	chr7B.!!$R6	2569
3	TraesCS7B01G425300	chr7B	697118880	697119884	1004	True	645.00	645	78.746000	835	1829	1	chr7B.!!$R5	994
4	TraesCS7B01G425300	chr7B	697423219	697424285	1066	False	643.00	643	78.033000	835	1897	1	chr7B.!!$F3	1062
5	TraesCS7B01G425300	chr7B	695500850	695501912	1062	True	628.00	628	77.768000	835	1897	1	chr7B.!!$R4	1062
6	TraesCS7B01G425300	chr7B	698871761	698872635	874	False	616.00	616	79.801000	835	1724	1	chr7B.!!$F5	889
7	TraesCS7B01G425300	chr7B	695493213	695493834	621	True	372.00	372	77.918000	1278	1897	1	chr7B.!!$R3	619
8	TraesCS7B01G425300	chr7A	699921720	699924139	2419	False	1019.00	1748	88.902667	229	2648	3	chr7A.!!$F1	2419
9	TraesCS7B01G425300	chr7A	700072981	700074331	1350	True	296.00	327	82.682000	407	1779	2	chr7A.!!$R3	1372
10	TraesCS7B01G425300	chr7D	610651447	610652879	1432	False	815.00	815	77.463000	445	1897	1	chr7D.!!$F3	1452
11	TraesCS7B01G425300	chr7D	609648366	609649868	1502	False	799.50	1212	86.988500	909	2269	2	chr7D.!!$F4	1360
12	TraesCS7B01G425300	chr7D	600282114	600283620	1506	False	797.00	797	76.838000	406	1897	1	chr7D.!!$F1	1491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
900	948	0.252197	ACCTAGCCCATTCGGTTGAC	59.748	55.0	0.0	0.0	0.0	3.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2425	2857	4.810491	TCCCAGTACAAAAACGAGTAACAC	59.19	41.667	0.0	0.0	0.0	3.32	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	8.669394	GGTGATTTAACCGATTTTAGACTTTG	57.331	34.615	0.00	0.00	0.00	2.77
26	27	7.753580	GGTGATTTAACCGATTTTAGACTTTGG	59.246	37.037	0.00	0.00	0.00	3.28
27	28	7.753580	GTGATTTAACCGATTTTAGACTTTGGG	59.246	37.037	0.00	0.00	0.00	4.12
28	29	6.578163	TTTAACCGATTTTAGACTTTGGGG	57.422	37.500	0.00	0.00	0.00	4.96
29	30	3.081710	ACCGATTTTAGACTTTGGGGG	57.918	47.619	0.00	0.00	0.00	5.40
30	31	2.645797	ACCGATTTTAGACTTTGGGGGA	59.354	45.455	0.00	0.00	0.00	4.81
31	32	3.074836	ACCGATTTTAGACTTTGGGGGAA	59.925	43.478	0.00	0.00	0.00	3.97
32	33	4.264217	ACCGATTTTAGACTTTGGGGGAAT	60.264	41.667	0.00	0.00	0.00	3.01
33	34	4.709886	CCGATTTTAGACTTTGGGGGAATT	59.290	41.667	0.00	0.00	0.00	2.17
34	35	5.186992	CCGATTTTAGACTTTGGGGGAATTT	59.813	40.000	0.00	0.00	0.00	1.82
35	36	6.099341	CGATTTTAGACTTTGGGGGAATTTG	58.901	40.000	0.00	0.00	0.00	2.32
36	37	6.071616	CGATTTTAGACTTTGGGGGAATTTGA	60.072	38.462	0.00	0.00	0.00	2.69
37	38	7.363793	CGATTTTAGACTTTGGGGGAATTTGAT	60.364	37.037	0.00	0.00	0.00	2.57
38	39	6.850752	TTTAGACTTTGGGGGAATTTGATC	57.149	37.500	0.00	0.00	0.00	2.92
39	40	3.713003	AGACTTTGGGGGAATTTGATCC	58.287	45.455	0.00	0.00	38.86	3.36
40	41	3.077391	AGACTTTGGGGGAATTTGATCCA	59.923	43.478	0.00	0.00	41.55	3.41
41	42	3.837731	GACTTTGGGGGAATTTGATCCAA	59.162	43.478	0.00	0.00	41.55	3.53
42	43	3.582647	ACTTTGGGGGAATTTGATCCAAC	59.417	43.478	0.00	0.00	41.55	3.77
43	44	3.558608	TTGGGGGAATTTGATCCAACT	57.441	42.857	0.00	0.00	41.55	3.16
44	45	4.683766	TTGGGGGAATTTGATCCAACTA	57.316	40.909	0.00	0.00	41.55	2.24
45	46	4.249638	TGGGGGAATTTGATCCAACTAG	57.750	45.455	0.00	0.00	41.55	2.57
46	47	3.855599	TGGGGGAATTTGATCCAACTAGA	59.144	43.478	0.00	0.00	41.55	2.43
47	48	4.482025	TGGGGGAATTTGATCCAACTAGAT	59.518	41.667	0.00	0.00	41.55	1.98
48	49	4.829492	GGGGGAATTTGATCCAACTAGATG	59.171	45.833	0.00	0.00	41.55	2.90
49	50	4.829492	GGGGAATTTGATCCAACTAGATGG	59.171	45.833	12.74	12.74	41.55	3.51
58	59	4.778213	TCCAACTAGATGGATTTGAGGG	57.222	45.455	17.26	0.00	44.52	4.30
59	60	3.459598	TCCAACTAGATGGATTTGAGGGG	59.540	47.826	17.26	0.00	44.52	4.79
60	61	3.217626	CAACTAGATGGATTTGAGGGGC	58.782	50.000	0.00	0.00	0.00	5.80
61	62	2.492025	ACTAGATGGATTTGAGGGGCA	58.508	47.619	0.00	0.00	0.00	5.36
62	63	2.852449	ACTAGATGGATTTGAGGGGCAA	59.148	45.455	0.00	0.00	33.88	4.52
74	75	6.584185	TTTGAGGGGCAAAACTATACTTTC	57.416	37.500	0.00	0.00	43.18	2.62
75	76	5.514500	TGAGGGGCAAAACTATACTTTCT	57.486	39.130	0.00	0.00	0.00	2.52
76	77	5.887754	TGAGGGGCAAAACTATACTTTCTT	58.112	37.500	0.00	0.00	0.00	2.52
77	78	5.944007	TGAGGGGCAAAACTATACTTTCTTC	59.056	40.000	0.00	0.00	0.00	2.87
78	79	6.140968	AGGGGCAAAACTATACTTTCTTCT	57.859	37.500	0.00	0.00	0.00	2.85
79	80	6.552932	AGGGGCAAAACTATACTTTCTTCTT	58.447	36.000	0.00	0.00	0.00	2.52
80	81	7.010771	AGGGGCAAAACTATACTTTCTTCTTT	58.989	34.615	0.00	0.00	0.00	2.52
81	82	7.509318	AGGGGCAAAACTATACTTTCTTCTTTT	59.491	33.333	0.00	0.00	0.00	2.27
82	83	8.148351	GGGGCAAAACTATACTTTCTTCTTTTT	58.852	33.333	0.00	0.00	0.00	1.94
83	84	8.978539	GGGCAAAACTATACTTTCTTCTTTTTG	58.021	33.333	0.00	0.00	36.32	2.44
84	85	9.744468	GGCAAAACTATACTTTCTTCTTTTTGA	57.256	29.630	7.47	0.00	35.61	2.69
99	100	4.991056	TCTTTTTGAGATCAACTGGACGAG	59.009	41.667	0.00	0.00	35.28	4.18
191	192	2.586425	CAAGGCCCATTTCGGTATCAT	58.414	47.619	0.00	0.00	0.00	2.45
202	203	6.016276	CCATTTCGGTATCATAAAAGGAAGGG	60.016	42.308	0.00	0.00	0.00	3.95
203	204	5.961398	TTCGGTATCATAAAAGGAAGGGA	57.039	39.130	0.00	0.00	0.00	4.20
240	241	0.902531	GACTCTCCCGATCCCAACAA	59.097	55.000	0.00	0.00	0.00	2.83
268	269	1.614241	CCGAGGGTTCTGGACGGATT	61.614	60.000	0.00	0.00	45.31	3.01
270	271	0.902531	GAGGGTTCTGGACGGATTCA	59.097	55.000	0.00	0.00	0.00	2.57
393	404	2.034066	CCCACTCCACGCCAATGT	59.966	61.111	0.00	0.00	0.00	2.71
638	654	4.020617	CCGCCTCACCCTTCTGCA	62.021	66.667	0.00	0.00	0.00	4.41
783	831	2.185608	GTCTTCCAGGAGCTCGCC	59.814	66.667	7.83	0.00	0.00	5.54
828	876	0.912487	ACATCTTGCTTCCCCCGGTA	60.912	55.000	0.00	0.00	0.00	4.02
829	877	0.463833	CATCTTGCTTCCCCCGGTAC	60.464	60.000	0.00	0.00	0.00	3.34
830	878	1.632965	ATCTTGCTTCCCCCGGTACC	61.633	60.000	0.16	0.16	0.00	3.34
831	879	2.204029	TTGCTTCCCCCGGTACCT	60.204	61.111	10.90	0.00	0.00	3.08
832	880	2.536997	CTTGCTTCCCCCGGTACCTG	62.537	65.000	10.90	2.79	0.00	4.00
833	881	2.686106	GCTTCCCCCGGTACCTGA	60.686	66.667	10.90	0.00	0.00	3.86
900	948	0.252197	ACCTAGCCCATTCGGTTGAC	59.748	55.000	0.00	0.00	0.00	3.18
1119	1178	3.738982	TGACATTGACGACTTGGTCATT	58.261	40.909	0.00	0.00	45.62	2.57
1163	1229	0.309922	CTCAGGCGCCATTATGCTTG	59.690	55.000	31.54	15.77	39.31	4.01
1466	1572	1.703438	GATGCTGCAACTGAGAGGCG	61.703	60.000	6.36	0.00	0.00	5.52
1493	1599	2.091885	TCTTGACAAGGAAACCAGCCTT	60.092	45.455	15.13	0.00	46.36	4.35
1866	2019	0.608640	AGCGACTGAGGTTGGTAAGG	59.391	55.000	0.00	0.00	35.98	2.69
2017	2266	7.110810	AGGTATAAGGAGGCAGAAAGTTTTAC	58.889	38.462	0.00	0.00	0.00	2.01
2425	2857	7.279758	TGGCAAAGTTTTGTATTTCTTTCCTTG	59.720	33.333	6.48	0.00	40.24	3.61

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	7.753580	CCAAAGTCTAAAATCGGTTAAATCACC	59.246	37.037	0.00	0.00	0.00	4.02
4	5	6.153851	CCCCCAAAGTCTAAAATCGGTTAAAT	59.846	38.462	0.00	0.00	0.00	1.40
8	9	3.074836	TCCCCCAAAGTCTAAAATCGGTT	59.925	43.478	0.00	0.00	0.00	4.44
9	10	2.645797	TCCCCCAAAGTCTAAAATCGGT	59.354	45.455	0.00	0.00	0.00	4.69
10	11	3.359695	TCCCCCAAAGTCTAAAATCGG	57.640	47.619	0.00	0.00	0.00	4.18
11	12	5.914898	AATTCCCCCAAAGTCTAAAATCG	57.085	39.130	0.00	0.00	0.00	3.34
12	13	7.239763	TCAAATTCCCCCAAAGTCTAAAATC	57.760	36.000	0.00	0.00	0.00	2.17
13	14	7.092891	GGATCAAATTCCCCCAAAGTCTAAAAT	60.093	37.037	0.00	0.00	0.00	1.82
14	15	6.212589	GGATCAAATTCCCCCAAAGTCTAAAA	59.787	38.462	0.00	0.00	0.00	1.52
15	16	5.719563	GGATCAAATTCCCCCAAAGTCTAAA	59.280	40.000	0.00	0.00	0.00	1.85
16	17	5.222442	TGGATCAAATTCCCCCAAAGTCTAA	60.222	40.000	0.00	0.00	34.67	2.10
17	18	4.293634	TGGATCAAATTCCCCCAAAGTCTA	59.706	41.667	0.00	0.00	34.67	2.59
18	19	3.077391	TGGATCAAATTCCCCCAAAGTCT	59.923	43.478	0.00	0.00	34.67	3.24
19	20	3.440127	TGGATCAAATTCCCCCAAAGTC	58.560	45.455	0.00	0.00	34.67	3.01
20	21	3.558608	TGGATCAAATTCCCCCAAAGT	57.441	42.857	0.00	0.00	34.67	2.66
21	22	3.840078	AGTTGGATCAAATTCCCCCAAAG	59.160	43.478	0.00	0.00	38.46	2.77
22	23	3.868062	AGTTGGATCAAATTCCCCCAAA	58.132	40.909	0.00	0.00	38.46	3.28
23	24	3.558608	AGTTGGATCAAATTCCCCCAA	57.441	42.857	0.00	0.00	34.67	4.12
24	25	3.855599	TCTAGTTGGATCAAATTCCCCCA	59.144	43.478	0.00	0.00	34.67	4.96
25	26	4.519906	TCTAGTTGGATCAAATTCCCCC	57.480	45.455	0.00	0.00	34.67	5.40
26	27	4.829492	CCATCTAGTTGGATCAAATTCCCC	59.171	45.833	13.80	0.00	39.25	4.81
27	28	5.694995	TCCATCTAGTTGGATCAAATTCCC	58.305	41.667	17.08	0.00	40.90	3.97
38	39	3.825328	CCCCTCAAATCCATCTAGTTGG	58.175	50.000	12.95	12.95	38.18	3.77
39	40	3.217626	GCCCCTCAAATCCATCTAGTTG	58.782	50.000	0.00	0.00	0.00	3.16
40	41	2.852449	TGCCCCTCAAATCCATCTAGTT	59.148	45.455	0.00	0.00	0.00	2.24
41	42	2.492025	TGCCCCTCAAATCCATCTAGT	58.508	47.619	0.00	0.00	0.00	2.57
42	43	3.582998	TTGCCCCTCAAATCCATCTAG	57.417	47.619	0.00	0.00	0.00	2.43
43	44	4.023291	GTTTTGCCCCTCAAATCCATCTA	58.977	43.478	0.00	0.00	43.53	1.98
44	45	2.833943	GTTTTGCCCCTCAAATCCATCT	59.166	45.455	0.00	0.00	43.53	2.90
45	46	2.833943	AGTTTTGCCCCTCAAATCCATC	59.166	45.455	0.00	0.00	43.53	3.51
46	47	2.906568	AGTTTTGCCCCTCAAATCCAT	58.093	42.857	0.00	0.00	43.53	3.41
47	48	2.397044	AGTTTTGCCCCTCAAATCCA	57.603	45.000	0.00	0.00	43.53	3.41
48	49	5.201243	AGTATAGTTTTGCCCCTCAAATCC	58.799	41.667	0.00	0.00	43.53	3.01
49	50	6.775594	AAGTATAGTTTTGCCCCTCAAATC	57.224	37.500	0.00	0.00	43.53	2.17
50	51	6.954102	AGAAAGTATAGTTTTGCCCCTCAAAT	59.046	34.615	6.99	0.00	43.53	2.32
51	52	6.311735	AGAAAGTATAGTTTTGCCCCTCAAA	58.688	36.000	6.99	0.00	42.50	2.69
52	53	5.887754	AGAAAGTATAGTTTTGCCCCTCAA	58.112	37.500	6.99	0.00	0.00	3.02
53	54	5.514500	AGAAAGTATAGTTTTGCCCCTCA	57.486	39.130	6.99	0.00	0.00	3.86
54	55	6.181190	AGAAGAAAGTATAGTTTTGCCCCTC	58.819	40.000	6.99	0.00	0.00	4.30
55	56	6.140968	AGAAGAAAGTATAGTTTTGCCCCT	57.859	37.500	6.99	0.00	0.00	4.79
56	57	6.835819	AAGAAGAAAGTATAGTTTTGCCCC	57.164	37.500	6.99	0.00	0.00	5.80
57	58	8.978539	CAAAAAGAAGAAAGTATAGTTTTGCCC	58.021	33.333	6.99	0.00	30.65	5.36
58	59	9.744468	TCAAAAAGAAGAAAGTATAGTTTTGCC	57.256	29.630	6.99	0.55	35.63	4.52
68	69	8.840321	CCAGTTGATCTCAAAAAGAAGAAAGTA	58.160	33.333	0.00	0.00	37.61	2.24
69	70	7.557719	TCCAGTTGATCTCAAAAAGAAGAAAGT	59.442	33.333	0.00	0.00	37.61	2.66
70	71	7.859875	GTCCAGTTGATCTCAAAAAGAAGAAAG	59.140	37.037	0.00	0.00	37.61	2.62
71	72	7.467267	CGTCCAGTTGATCTCAAAAAGAAGAAA	60.467	37.037	0.00	0.00	37.61	2.52
72	73	6.017934	CGTCCAGTTGATCTCAAAAAGAAGAA	60.018	38.462	0.00	0.00	37.61	2.52
73	74	5.466728	CGTCCAGTTGATCTCAAAAAGAAGA	59.533	40.000	0.00	0.00	37.61	2.87
74	75	5.466728	TCGTCCAGTTGATCTCAAAAAGAAG	59.533	40.000	0.00	0.00	37.61	2.85
75	76	5.364778	TCGTCCAGTTGATCTCAAAAAGAA	58.635	37.500	0.00	0.00	37.61	2.52
76	77	4.956085	TCGTCCAGTTGATCTCAAAAAGA	58.044	39.130	0.00	0.00	37.63	2.52
77	78	4.752101	ACTCGTCCAGTTGATCTCAAAAAG	59.248	41.667	0.00	0.00	37.63	2.27
78	79	4.703897	ACTCGTCCAGTTGATCTCAAAAA	58.296	39.130	0.00	0.00	37.63	1.94
79	80	4.336889	ACTCGTCCAGTTGATCTCAAAA	57.663	40.909	0.00	0.00	37.63	2.44
80	81	4.523173	ACTACTCGTCCAGTTGATCTCAAA	59.477	41.667	0.00	0.00	37.63	2.69
81	82	4.079970	ACTACTCGTCCAGTTGATCTCAA	58.920	43.478	0.00	0.00	36.43	3.02
82	83	3.687125	ACTACTCGTCCAGTTGATCTCA	58.313	45.455	0.00	0.00	36.43	3.27
83	84	4.705337	AACTACTCGTCCAGTTGATCTC	57.295	45.455	0.00	0.00	36.43	2.75
84	85	4.767928	AGAAACTACTCGTCCAGTTGATCT	59.232	41.667	0.00	0.00	35.23	2.75
85	86	5.061920	AGAAACTACTCGTCCAGTTGATC	57.938	43.478	0.00	0.00	35.23	2.92
90	91	5.532664	AAAAGAGAAACTACTCGTCCAGT	57.467	39.130	0.00	0.00	41.25	4.00
99	100	8.070769	CCAGCTTTGTCTAAAAAGAGAAACTAC	58.929	37.037	0.99	0.00	39.12	2.73
218	219	0.041238	TTGGGATCGGGAGAGTCAGT	59.959	55.000	0.00	0.00	45.48	3.41
278	289	1.227292	GGAAACCTCGGCGAGATCC	60.227	63.158	36.47	31.31	0.00	3.36
393	404	0.603569	GTCTTCCTCTTGCTGGTCGA	59.396	55.000	0.00	0.00	0.00	4.20
561	573	3.164977	TGGTGGTTCGTGGAGGCA	61.165	61.111	0.00	0.00	0.00	4.75
659	675	3.488090	GAAAAGTCGGCGGCGAGG	61.488	66.667	35.53	4.92	0.00	4.63
660	676	3.488090	GGAAAAGTCGGCGGCGAG	61.488	66.667	35.53	5.81	0.00	5.03
661	677	3.524648	AAGGAAAAGTCGGCGGCGA	62.525	57.895	31.46	31.46	0.00	5.54
783	831	2.125310	TGCAAGGGGTCGCATACG	60.125	61.111	0.00	0.00	42.01	3.06
828	876	2.847234	TGCAAGGGGTCGTCAGGT	60.847	61.111	0.00	0.00	0.00	4.00
829	877	2.358737	GTGCAAGGGGTCGTCAGG	60.359	66.667	0.00	0.00	0.00	3.86
830	878	2.358737	GGTGCAAGGGGTCGTCAG	60.359	66.667	0.00	0.00	0.00	3.51
831	879	4.308458	CGGTGCAAGGGGTCGTCA	62.308	66.667	0.00	0.00	0.00	4.35
832	880	4.309950	ACGGTGCAAGGGGTCGTC	62.310	66.667	0.00	0.00	0.00	4.20
833	881	4.309950	GACGGTGCAAGGGGTCGT	62.310	66.667	0.00	0.00	36.74	4.34
900	948	1.299976	GTACTTGGGGAGCAGGTGG	59.700	63.158	0.00	0.00	0.00	4.61
1119	1178	1.207488	AAGGGTGGAGCTGTGGCATA	61.207	55.000	0.00	0.00	41.70	3.14
1163	1229	1.348036	AGTCCCAGTAGAAGCAACCAC	59.652	52.381	0.00	0.00	0.00	4.16
1466	1572	2.287849	GGTTTCCTTGTCAAGAGCAAGC	60.288	50.000	14.42	8.94	41.27	4.01
1493	1599	9.946165	CATCAACGAGTAAACTATGTACAGATA	57.054	33.333	0.33	0.00	0.00	1.98
2425	2857	4.810491	TCCCAGTACAAAAACGAGTAACAC	59.190	41.667	0.00	0.00	0.00	3.32

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.