Multiple sequence alignment - TraesCS7B01G424100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G424100 chr7B 100.000 2309 0 0 1 2309 693201291 693198983 0.000000e+00 4265.0
1 TraesCS7B01G424100 chr7B 83.155 748 74 34 632 1344 694799060 694798330 9.000000e-179 636.0
2 TraesCS7B01G424100 chr7B 83.518 631 55 27 1345 1948 693821004 693820396 5.610000e-151 544.0
3 TraesCS7B01G424100 chr7B 82.334 634 53 31 1345 1944 694798295 694797687 1.590000e-136 496.0
4 TraesCS7B01G424100 chr7B 78.718 827 81 37 575 1345 696383287 696382500 4.490000e-127 464.0
5 TraesCS7B01G424100 chr7B 79.118 771 80 42 632 1345 696595503 696594757 7.520000e-125 457.0
6 TraesCS7B01G424100 chr7B 82.407 540 54 25 1349 1864 696594720 696594198 1.270000e-117 433.0
7 TraesCS7B01G424100 chr7B 81.883 563 39 31 789 1326 693821587 693821063 1.280000e-112 416.0
8 TraesCS7B01G424100 chr7B 76.358 681 95 48 874 1508 696363164 696362504 2.880000e-79 305.0
9 TraesCS7B01G424100 chr7B 83.851 322 22 14 1634 1948 694793405 694793107 1.750000e-71 279.0
10 TraesCS7B01G424100 chr7B 80.541 370 49 13 961 1310 693792599 693792233 1.760000e-66 263.0
11 TraesCS7B01G424100 chr7B 82.432 296 34 10 1712 2004 698860874 698860594 2.290000e-60 243.0
12 TraesCS7B01G424100 chr7B 87.135 171 14 4 2118 2280 696371098 696370928 1.090000e-43 187.0
13 TraesCS7B01G424100 chr7B 75.217 460 62 38 445 874 696590302 696589865 1.100000e-38 171.0
14 TraesCS7B01G424100 chr7B 78.114 297 30 14 1355 1639 698861165 698860892 3.070000e-34 156.0
15 TraesCS7B01G424100 chr7B 80.402 199 31 7 1549 1740 698856963 698856766 6.650000e-31 145.0
16 TraesCS7B01G424100 chr7B 90.909 88 4 1 1856 1943 696593813 696593730 5.210000e-22 115.0
17 TraesCS7B01G424100 chr7B 94.872 39 2 0 270 308 332312407 332312445 6.890000e-06 62.1
18 TraesCS7B01G424100 chr7D 92.332 952 40 6 1358 2280 610236086 610237033 0.000000e+00 1323.0
19 TraesCS7B01G424100 chr7D 84.146 984 68 37 1349 2280 607561770 607560823 0.000000e+00 872.0
20 TraesCS7B01G424100 chr7D 77.377 999 86 63 575 1512 608488456 608487537 4.490000e-127 464.0
21 TraesCS7B01G424100 chr7D 79.301 744 87 31 632 1345 610235325 610236031 2.090000e-125 459.0
22 TraesCS7B01G424100 chr7D 85.201 473 39 11 1818 2270 608487216 608486755 7.520000e-125 457.0
23 TraesCS7B01G424100 chr7D 85.340 382 23 13 994 1342 607562192 607561811 4.690000e-97 364.0
24 TraesCS7B01G424100 chr7D 88.040 301 21 8 1656 1948 608446141 608445848 2.200000e-90 342.0
25 TraesCS7B01G424100 chr7D 81.364 440 42 19 891 1310 608455400 608454981 2.860000e-84 322.0
26 TraesCS7B01G424100 chr7D 83.260 227 22 8 712 922 607563959 607563733 6.510000e-46 195.0
27 TraesCS7B01G424100 chr7D 86.857 175 15 6 1599 1771 608487394 608487226 3.030000e-44 189.0
28 TraesCS7B01G424100 chr7D 79.167 288 31 17 1 271 608489032 608488757 3.050000e-39 172.0
29 TraesCS7B01G424100 chr7D 84.298 121 4 8 1349 1468 608450059 608449953 1.130000e-18 104.0
30 TraesCS7B01G424100 chr7A 81.472 815 74 36 585 1345 699766850 699766059 4.250000e-167 597.0
31 TraesCS7B01G424100 chr7A 84.095 503 47 16 1369 1848 699765999 699765507 2.700000e-124 455.0
32 TraesCS7B01G424100 chr7A 76.267 375 39 28 876 1212 699744324 699743962 1.100000e-33 154.0
33 TraesCS7B01G424100 chr7A 76.442 208 27 13 341 532 699768252 699768051 2.440000e-15 93.5
34 TraesCS7B01G424100 chr7A 92.683 41 3 0 268 308 281734863 281734903 2.480000e-05 60.2
35 TraesCS7B01G424100 chr4A 83.770 573 46 24 806 1345 661969350 661969908 1.230000e-137 499.0
36 TraesCS7B01G424100 chr4A 79.775 267 31 8 1388 1639 661969999 661970257 3.050000e-39 172.0
37 TraesCS7B01G424100 chr4A 80.000 120 13 10 1549 1662 661974338 661974452 6.840000e-11 78.7
38 TraesCS7B01G424100 chr4A 100.000 31 0 0 638 668 661969234 661969264 8.910000e-05 58.4
39 TraesCS7B01G424100 chrUn 80.083 723 68 29 632 1293 77587193 77586486 3.470000e-128 468.0
40 TraesCS7B01G424100 chrUn 84.472 483 44 12 1818 2280 83366791 83366320 4.530000e-122 448.0
41 TraesCS7B01G424100 chrUn 78.476 748 61 41 812 1512 83371271 83370577 4.620000e-107 398.0
42 TraesCS7B01G424100 chrUn 77.730 696 84 42 638 1310 77545377 77544730 6.060000e-96 361.0
43 TraesCS7B01G424100 chrUn 91.304 69 5 1 270 337 51243074 51243006 2.440000e-15 93.5
44 TraesCS7B01G424100 chr5D 94.444 36 2 0 273 308 493914295 493914330 3.200000e-04 56.5
45 TraesCS7B01G424100 chr2B 100.000 29 0 0 277 305 693361675 693361703 1.000000e-03 54.7
46 TraesCS7B01G424100 chr3A 100.000 28 0 0 281 308 552232625 552232598 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G424100 chr7B 693198983 693201291 2308 True 4265.000000 4265 100.000000 1 2309 1 chr7B.!!$R1 2308
1 TraesCS7B01G424100 chr7B 694797687 694799060 1373 True 566.000000 636 82.744500 632 1944 2 chr7B.!!$R8 1312
2 TraesCS7B01G424100 chr7B 693820396 693821587 1191 True 480.000000 544 82.700500 789 1948 2 chr7B.!!$R7 1159
3 TraesCS7B01G424100 chr7B 696382500 696383287 787 True 464.000000 464 78.718000 575 1345 1 chr7B.!!$R6 770
4 TraesCS7B01G424100 chr7B 696362504 696363164 660 True 305.000000 305 76.358000 874 1508 1 chr7B.!!$R4 634
5 TraesCS7B01G424100 chr7B 696589865 696595503 5638 True 294.000000 457 81.912750 445 1943 4 chr7B.!!$R9 1498
6 TraesCS7B01G424100 chr7D 610235325 610237033 1708 False 891.000000 1323 85.816500 632 2280 2 chr7D.!!$F1 1648
7 TraesCS7B01G424100 chr7D 607560823 607563959 3136 True 477.000000 872 84.248667 712 2280 3 chr7D.!!$R2 1568
8 TraesCS7B01G424100 chr7D 608486755 608489032 2277 True 320.500000 464 82.150500 1 2270 4 chr7D.!!$R4 2269
9 TraesCS7B01G424100 chr7D 608445848 608450059 4211 True 223.000000 342 86.169000 1349 1948 2 chr7D.!!$R3 599
10 TraesCS7B01G424100 chr7A 699765507 699768252 2745 True 381.833333 597 80.669667 341 1848 3 chr7A.!!$R2 1507
11 TraesCS7B01G424100 chr4A 661969234 661970257 1023 False 243.133333 499 87.848333 638 1639 3 chr4A.!!$F2 1001
12 TraesCS7B01G424100 chrUn 77586486 77587193 707 True 468.000000 468 80.083000 632 1293 1 chrUn.!!$R3 661
13 TraesCS7B01G424100 chrUn 83366320 83371271 4951 True 423.000000 448 81.474000 812 2280 2 chrUn.!!$R4 1468
14 TraesCS7B01G424100 chrUn 77544730 77545377 647 True 361.000000 361 77.730000 638 1310 1 chrUn.!!$R2 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.033642 TGGAACACGCACGGAATGTA 59.966 50.0 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 11947 0.508641 CTGCACGAGTTGGTTCTTCG 59.491 55.0 0.0 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.033642 TGGAACACGCACGGAATGTA 59.966 50.000 0.00 0.00 0.00 2.29
37 38 1.338294 TGGAACACGCACGGAATGTAT 60.338 47.619 0.00 0.00 0.00 2.29
38 39 1.326548 GGAACACGCACGGAATGTATC 59.673 52.381 0.00 0.00 0.00 2.24
39 40 0.996462 AACACGCACGGAATGTATCG 59.004 50.000 0.00 0.00 33.57 2.92
40 41 0.171679 ACACGCACGGAATGTATCGA 59.828 50.000 0.00 0.00 32.28 3.59
53 54 0.044161 GTATCGATCGTGCGTGTTGC 60.044 55.000 15.94 0.00 46.70 4.17
73 74 3.485431 CGGCTTCGTGCAGAGCAG 61.485 66.667 15.91 9.79 45.15 4.24
82 88 3.397439 GCAGAGCAGGAGCAGGGA 61.397 66.667 0.00 0.00 45.49 4.20
105 111 3.766496 AAACCAACGGCGCTTGCAC 62.766 57.895 6.90 0.00 41.71 4.57
109 115 3.209097 AACGGCGCTTGCACTTGT 61.209 55.556 6.90 0.00 41.71 3.16
115 121 1.635663 GCGCTTGCACTTGTACGGAT 61.636 55.000 0.00 0.00 38.92 4.18
154 164 3.018973 GCGAGGTGCACGTTTTGA 58.981 55.556 14.12 0.00 45.45 2.69
155 165 1.368850 GCGAGGTGCACGTTTTGAC 60.369 57.895 14.12 0.00 45.45 3.18
156 166 1.278637 CGAGGTGCACGTTTTGACC 59.721 57.895 14.12 0.00 0.00 4.02
158 168 2.113131 GAGGTGCACGTTTTGACCGG 62.113 60.000 14.12 0.00 33.15 5.28
159 169 2.330041 GTGCACGTTTTGACCGGG 59.670 61.111 6.32 0.00 0.00 5.73
162 172 4.020378 CACGTTTTGACCGGGCCG 62.020 66.667 21.46 21.46 0.00 6.13
163 173 4.238654 ACGTTTTGACCGGGCCGA 62.239 61.111 30.79 4.05 0.00 5.54
164 174 3.419759 CGTTTTGACCGGGCCGAG 61.420 66.667 30.79 20.07 0.00 4.63
165 175 2.281276 GTTTTGACCGGGCCGAGT 60.281 61.111 30.79 23.44 0.00 4.18
166 176 2.281208 TTTTGACCGGGCCGAGTG 60.281 61.111 30.79 13.96 0.00 3.51
167 177 3.109592 TTTTGACCGGGCCGAGTGT 62.110 57.895 30.79 17.71 0.00 3.55
168 178 2.612095 TTTTGACCGGGCCGAGTGTT 62.612 55.000 30.79 5.49 0.00 3.32
169 179 2.999739 TTTGACCGGGCCGAGTGTTC 63.000 60.000 30.79 15.20 0.00 3.18
170 180 3.998672 GACCGGGCCGAGTGTTCA 61.999 66.667 30.79 0.00 0.00 3.18
171 181 4.309950 ACCGGGCCGAGTGTTCAC 62.310 66.667 30.79 0.00 0.00 3.18
208 225 3.422655 GTCGCATCACGGGAATTAAAAC 58.577 45.455 0.00 0.00 43.89 2.43
209 226 3.075148 TCGCATCACGGGAATTAAAACA 58.925 40.909 0.00 0.00 43.89 2.83
214 231 3.414269 TCACGGGAATTAAAACACCTCC 58.586 45.455 0.00 0.00 0.00 4.30
216 233 3.057806 CACGGGAATTAAAACACCTCCAC 60.058 47.826 0.00 0.00 0.00 4.02
217 234 2.490509 CGGGAATTAAAACACCTCCACC 59.509 50.000 0.00 0.00 0.00 4.61
261 280 4.776308 ACTTACGATAGGAACCTTTCACCT 59.224 41.667 10.78 0.00 43.77 4.00
265 284 1.742308 TAGGAACCTTTCACCTGGCT 58.258 50.000 0.00 0.00 35.52 4.75
266 285 0.402121 AGGAACCTTTCACCTGGCTC 59.598 55.000 0.00 0.00 32.39 4.70
267 286 0.110486 GGAACCTTTCACCTGGCTCA 59.890 55.000 0.00 0.00 0.00 4.26
271 290 1.494721 ACCTTTCACCTGGCTCAAAGA 59.505 47.619 12.04 0.00 0.00 2.52
272 291 2.108952 ACCTTTCACCTGGCTCAAAGAT 59.891 45.455 12.04 0.00 0.00 2.40
275 294 4.766891 CCTTTCACCTGGCTCAAAGATTTA 59.233 41.667 12.04 0.00 0.00 1.40
277 296 4.908601 TCACCTGGCTCAAAGATTTAGA 57.091 40.909 0.00 0.00 0.00 2.10
278 297 4.836825 TCACCTGGCTCAAAGATTTAGAG 58.163 43.478 0.00 0.00 0.00 2.43
292 311 8.598075 CAAAGATTTAGAGCATAATTGGTTTGC 58.402 33.333 0.00 0.00 32.62 3.68
294 313 8.752005 AGATTTAGAGCATAATTGGTTTGCTA 57.248 30.769 6.90 0.00 46.21 3.49
296 315 9.617975 GATTTAGAGCATAATTGGTTTGCTATC 57.382 33.333 6.90 4.29 46.21 2.08
297 316 8.518430 TTTAGAGCATAATTGGTTTGCTATCA 57.482 30.769 6.90 0.00 46.21 2.15
298 317 8.518430 TTAGAGCATAATTGGTTTGCTATCAA 57.482 30.769 6.90 0.00 46.21 2.57
299 318 6.799512 AGAGCATAATTGGTTTGCTATCAAC 58.200 36.000 6.90 0.00 46.21 3.18
300 319 6.377996 AGAGCATAATTGGTTTGCTATCAACA 59.622 34.615 6.90 0.00 46.21 3.33
301 320 7.069085 AGAGCATAATTGGTTTGCTATCAACAT 59.931 33.333 6.90 0.00 46.21 2.71
302 321 7.558604 AGCATAATTGGTTTGCTATCAACATT 58.441 30.769 5.54 0.00 44.51 2.71
303 322 8.042515 AGCATAATTGGTTTGCTATCAACATTT 58.957 29.630 5.54 0.00 44.51 2.32
304 323 8.117988 GCATAATTGGTTTGCTATCAACATTTG 58.882 33.333 0.00 0.00 33.61 2.32
305 324 8.605746 CATAATTGGTTTGCTATCAACATTTGG 58.394 33.333 0.00 0.00 30.75 3.28
306 325 3.924144 TGGTTTGCTATCAACATTTGGC 58.076 40.909 0.00 0.00 30.75 4.52
307 326 3.323115 TGGTTTGCTATCAACATTTGGCA 59.677 39.130 0.00 0.00 30.75 4.92
308 327 4.202295 TGGTTTGCTATCAACATTTGGCAA 60.202 37.500 0.00 0.00 37.80 4.52
309 328 4.754114 GGTTTGCTATCAACATTTGGCAAA 59.246 37.500 16.01 16.01 43.94 3.68
310 329 5.238214 GGTTTGCTATCAACATTTGGCAAAA 59.762 36.000 17.70 0.00 46.26 2.44
311 330 6.072563 GGTTTGCTATCAACATTTGGCAAAAT 60.073 34.615 17.70 7.98 46.26 1.82
312 331 6.724694 TTGCTATCAACATTTGGCAAAATC 57.275 33.333 17.70 0.00 36.87 2.17
313 332 5.791666 TGCTATCAACATTTGGCAAAATCA 58.208 33.333 17.70 0.00 33.59 2.57
314 333 6.228995 TGCTATCAACATTTGGCAAAATCAA 58.771 32.000 17.70 2.51 33.59 2.57
315 334 6.709397 TGCTATCAACATTTGGCAAAATCAAA 59.291 30.769 17.70 3.59 38.30 2.69
316 335 7.228108 TGCTATCAACATTTGGCAAAATCAAAA 59.772 29.630 17.70 1.99 37.60 2.44
317 336 8.074972 GCTATCAACATTTGGCAAAATCAAAAA 58.925 29.630 17.70 0.36 37.60 1.94
320 339 8.630278 TCAACATTTGGCAAAATCAAAAATTG 57.370 26.923 17.70 9.58 37.60 2.32
321 340 7.222224 TCAACATTTGGCAAAATCAAAAATTGC 59.778 29.630 17.70 1.29 46.60 3.56
330 349 7.338462 GCAAAATCAAAAATTGCAACATTTGG 58.662 30.769 26.20 17.83 46.57 3.28
331 350 7.338462 CAAAATCAAAAATTGCAACATTTGGC 58.662 30.769 26.20 0.00 34.39 4.52
332 351 5.769484 ATCAAAAATTGCAACATTTGGCA 57.231 30.435 26.20 15.62 38.46 4.92
373 395 3.625099 GCATTTCTGCCTGCCCAT 58.375 55.556 0.00 0.00 42.88 4.00
375 397 0.386838 GCATTTCTGCCTGCCCATAC 59.613 55.000 0.00 0.00 42.88 2.39
379 401 2.300956 TTCTGCCTGCCCATACAAAA 57.699 45.000 0.00 0.00 0.00 2.44
413 435 3.427098 GCCGTTTTCTTATTCCTTTCGGG 60.427 47.826 0.00 0.00 36.61 5.14
446 472 4.562552 GCTTTCTAGCCTGTTCTCTTCTGT 60.563 45.833 0.00 0.00 41.74 3.41
447 473 5.336849 GCTTTCTAGCCTGTTCTCTTCTGTA 60.337 44.000 0.00 0.00 41.74 2.74
448 474 6.629291 GCTTTCTAGCCTGTTCTCTTCTGTAT 60.629 42.308 0.00 0.00 41.74 2.29
449 475 5.843673 TCTAGCCTGTTCTCTTCTGTATG 57.156 43.478 0.00 0.00 0.00 2.39
450 476 5.510430 TCTAGCCTGTTCTCTTCTGTATGA 58.490 41.667 0.00 0.00 0.00 2.15
451 477 6.132658 TCTAGCCTGTTCTCTTCTGTATGAT 58.867 40.000 0.00 0.00 0.00 2.45
452 478 7.290813 TCTAGCCTGTTCTCTTCTGTATGATA 58.709 38.462 0.00 0.00 0.00 2.15
453 479 6.155475 AGCCTGTTCTCTTCTGTATGATAC 57.845 41.667 0.00 0.00 0.00 2.24
454 480 5.658634 AGCCTGTTCTCTTCTGTATGATACA 59.341 40.000 5.05 5.05 37.13 2.29
458 484 7.651304 CCTGTTCTCTTCTGTATGATACATGAC 59.349 40.741 5.65 0.00 38.15 3.06
466 492 4.287720 TGTATGATACATGACGAGAACGC 58.712 43.478 0.23 0.00 37.05 4.84
535 664 2.772287 ACCGAAAGAGAGAAAAGCCAG 58.228 47.619 0.00 0.00 0.00 4.85
539 668 4.938226 CCGAAAGAGAGAAAAGCCAGTAAT 59.062 41.667 0.00 0.00 0.00 1.89
545 674 3.624861 AGAGAAAAGCCAGTAATCATGCG 59.375 43.478 0.00 0.00 0.00 4.73
550 679 3.475566 AGCCAGTAATCATGCGTGTAT 57.524 42.857 5.68 0.00 0.00 2.29
554 683 6.697395 AGCCAGTAATCATGCGTGTATATAA 58.303 36.000 5.68 0.00 0.00 0.98
555 684 7.158697 AGCCAGTAATCATGCGTGTATATAAA 58.841 34.615 5.68 0.00 0.00 1.40
556 685 7.331934 AGCCAGTAATCATGCGTGTATATAAAG 59.668 37.037 5.68 0.00 0.00 1.85
567 696 6.978659 TGCGTGTATATAAAGAAAGTCTGAGG 59.021 38.462 0.00 0.00 0.00 3.86
568 697 6.074249 GCGTGTATATAAAGAAAGTCTGAGGC 60.074 42.308 0.00 0.00 0.00 4.70
569 698 6.978659 CGTGTATATAAAGAAAGTCTGAGGCA 59.021 38.462 0.00 0.00 0.00 4.75
570 699 7.168302 CGTGTATATAAAGAAAGTCTGAGGCAG 59.832 40.741 0.00 0.00 0.00 4.85
571 700 6.986817 TGTATATAAAGAAAGTCTGAGGCAGC 59.013 38.462 0.00 0.00 0.00 5.25
572 701 2.947127 AAAGAAAGTCTGAGGCAGCT 57.053 45.000 0.00 0.00 0.00 4.24
573 702 5.683876 ATAAAGAAAGTCTGAGGCAGCTA 57.316 39.130 0.00 0.00 0.00 3.32
635 1831 4.284860 TGTGCGCACTCGACAGCT 62.285 61.111 37.59 0.00 38.10 4.24
669 1870 2.740826 CCGACCGTTGCCATCGTT 60.741 61.111 0.00 0.00 34.02 3.85
671 1872 2.867472 GACCGTTGCCATCGTTGG 59.133 61.111 8.23 8.23 46.66 3.77
743 1966 0.389391 AACACCCTCACGTCTGTCTG 59.611 55.000 0.00 0.00 0.00 3.51
746 1969 2.279069 CCCTCACGTCTGTCTGGCT 61.279 63.158 0.00 0.00 0.00 4.75
748 1971 0.888619 CCTCACGTCTGTCTGGCTAA 59.111 55.000 0.00 0.00 0.00 3.09
749 1972 1.402984 CCTCACGTCTGTCTGGCTAAC 60.403 57.143 0.00 0.00 0.00 2.34
751 1974 0.603569 CACGTCTGTCTGGCTAACCT 59.396 55.000 0.00 0.00 36.63 3.50
752 1975 1.816835 CACGTCTGTCTGGCTAACCTA 59.183 52.381 0.00 0.00 36.63 3.08
786 2014 2.429069 GGCTTTGCGTTGCTTCCG 60.429 61.111 0.00 0.00 0.00 4.30
930 2218 3.077556 CCCACCTCCACCTCCTCG 61.078 72.222 0.00 0.00 0.00 4.63
935 2248 2.043450 CTCCACCTCCTCGCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
937 2250 2.363018 CCACCTCCTCGCTCCTCA 60.363 66.667 0.00 0.00 0.00 3.86
941 2262 1.379176 CCTCCTCGCTCCTCACTCA 60.379 63.158 0.00 0.00 0.00 3.41
984 2439 3.006537 GCTCAACCACACTAGTACCAAGA 59.993 47.826 0.00 0.00 0.00 3.02
985 2440 4.810790 CTCAACCACACTAGTACCAAGAG 58.189 47.826 0.00 0.00 0.00 2.85
986 2441 3.006537 TCAACCACACTAGTACCAAGAGC 59.993 47.826 0.00 0.00 0.00 4.09
987 2442 2.605257 ACCACACTAGTACCAAGAGCA 58.395 47.619 0.00 0.00 0.00 4.26
988 2443 2.969950 ACCACACTAGTACCAAGAGCAA 59.030 45.455 0.00 0.00 0.00 3.91
989 2444 3.006967 ACCACACTAGTACCAAGAGCAAG 59.993 47.826 0.00 0.00 0.00 4.01
990 2445 2.996621 CACACTAGTACCAAGAGCAAGC 59.003 50.000 0.00 0.00 0.00 4.01
991 2446 2.028020 ACACTAGTACCAAGAGCAAGCC 60.028 50.000 0.00 0.00 0.00 4.35
992 2447 2.028112 CACTAGTACCAAGAGCAAGCCA 60.028 50.000 0.00 0.00 0.00 4.75
1032 3832 1.076923 GTCCTCCTCGCCCTACTCA 60.077 63.158 0.00 0.00 0.00 3.41
1326 4186 7.102847 AGCCTGAACTGAATTCTACTAGTAC 57.897 40.000 7.05 0.00 38.25 2.73
1328 4188 6.496571 CCTGAACTGAATTCTACTAGTACCG 58.503 44.000 7.05 0.00 38.25 4.02
1329 4189 6.318144 CCTGAACTGAATTCTACTAGTACCGA 59.682 42.308 7.05 0.00 38.25 4.69
1330 4190 7.013464 CCTGAACTGAATTCTACTAGTACCGAT 59.987 40.741 7.05 0.00 38.25 4.18
1341 4213 7.047891 TCTACTAGTACCGATCGTCCTTTTTA 58.952 38.462 15.09 0.00 0.00 1.52
1342 4214 6.515272 ACTAGTACCGATCGTCCTTTTTAA 57.485 37.500 15.09 0.00 0.00 1.52
1363 4241 8.462143 TTTAACTGTATGAACGAGACTGAATC 57.538 34.615 0.00 0.00 0.00 2.52
1364 4242 5.644977 ACTGTATGAACGAGACTGAATCA 57.355 39.130 0.00 0.00 0.00 2.57
1365 4243 5.645624 ACTGTATGAACGAGACTGAATCAG 58.354 41.667 8.98 8.98 37.52 2.90
1429 4351 1.468736 CGTACCGAGGAGTAGCAAACC 60.469 57.143 0.00 0.00 0.00 3.27
1516 7960 2.954989 TCAATGCAAGCCAACAGTACAA 59.045 40.909 0.00 0.00 0.00 2.41
1536 8008 9.588096 AGTACAAGGAGATAAAGAATTGGTTTT 57.412 29.630 0.00 0.00 0.00 2.43
1542 8014 7.447238 AGGAGATAAAGAATTGGTTTTGTTCGA 59.553 33.333 0.00 0.00 0.00 3.71
1683 11861 4.128643 CAAACAGTACGTGGGTAAAAGGA 58.871 43.478 0.00 0.00 0.00 3.36
1696 11874 1.831580 AAAAGGATGCTGCAGAGGAC 58.168 50.000 20.43 4.22 0.00 3.85
1741 11924 2.045561 ATCGAACCAACCACACACAA 57.954 45.000 0.00 0.00 0.00 3.33
1757 11947 4.035017 CACACAAACCAAACGAATCTGAC 58.965 43.478 0.00 0.00 0.00 3.51
1792 11982 1.014352 GCAGTTTGTCACGGTTCACT 58.986 50.000 0.00 0.00 0.00 3.41
1843 12033 2.555757 CCTCTGCACTTCCCTTTCTTTG 59.444 50.000 0.00 0.00 0.00 2.77
2200 16189 1.098129 GGCGGAGAAGAAAGGCCATC 61.098 60.000 5.01 2.29 43.23 3.51
2236 16226 7.789831 TGTAATCTTAGAACATAGGTGAGGGAT 59.210 37.037 0.00 0.00 0.00 3.85
2281 16271 4.934356 TGCAAACCCTATCTTGAATTCCT 58.066 39.130 2.27 0.00 0.00 3.36
2282 16272 4.949856 TGCAAACCCTATCTTGAATTCCTC 59.050 41.667 2.27 0.00 0.00 3.71
2283 16273 5.196695 GCAAACCCTATCTTGAATTCCTCT 58.803 41.667 2.27 0.00 0.00 3.69
2284 16274 5.067023 GCAAACCCTATCTTGAATTCCTCTG 59.933 44.000 2.27 0.00 0.00 3.35
2285 16275 6.418101 CAAACCCTATCTTGAATTCCTCTGA 58.582 40.000 2.27 0.00 0.00 3.27
2286 16276 6.642733 AACCCTATCTTGAATTCCTCTGAA 57.357 37.500 2.27 0.00 34.33 3.02
2287 16277 6.642733 ACCCTATCTTGAATTCCTCTGAAA 57.357 37.500 2.27 0.00 33.32 2.69
2288 16278 7.218314 ACCCTATCTTGAATTCCTCTGAAAT 57.782 36.000 2.27 0.00 33.32 2.17
2289 16279 7.059156 ACCCTATCTTGAATTCCTCTGAAATG 58.941 38.462 2.27 0.00 33.32 2.32
2290 16280 6.016443 CCCTATCTTGAATTCCTCTGAAATGC 60.016 42.308 2.27 0.00 33.32 3.56
2291 16281 6.544931 CCTATCTTGAATTCCTCTGAAATGCA 59.455 38.462 2.27 0.00 33.32 3.96
2292 16282 5.633830 TCTTGAATTCCTCTGAAATGCAC 57.366 39.130 2.27 0.00 33.32 4.57
2293 16283 5.319453 TCTTGAATTCCTCTGAAATGCACT 58.681 37.500 2.27 0.00 33.32 4.40
2295 16285 5.381174 TGAATTCCTCTGAAATGCACTTG 57.619 39.130 2.27 0.00 33.32 3.16
2296 16286 4.219070 TGAATTCCTCTGAAATGCACTTGG 59.781 41.667 2.27 0.00 33.32 3.61
2297 16287 2.957402 TCCTCTGAAATGCACTTGGT 57.043 45.000 0.00 0.00 0.00 3.67
2298 16288 2.507484 TCCTCTGAAATGCACTTGGTG 58.493 47.619 0.00 0.00 36.51 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.666880 GTTCCATGCGCACAATGCAA 60.667 50.000 14.90 0.00 46.87 4.08
7 8 1.209898 CGTGTTCCATGCGCACAAT 59.790 52.632 14.90 0.00 33.70 2.71
33 34 1.264672 CAACACGCACGATCGATACA 58.735 50.000 24.34 0.00 0.00 2.29
36 37 2.452813 GGCAACACGCACGATCGAT 61.453 57.895 24.34 0.00 45.17 3.59
37 38 3.109547 GGCAACACGCACGATCGA 61.110 61.111 24.34 0.00 45.17 3.59
38 39 4.483683 CGGCAACACGCACGATCG 62.484 66.667 14.88 14.88 45.17 3.69
58 59 2.047844 TCCTGCTCTGCACGAAGC 60.048 61.111 4.43 4.43 45.96 3.86
61 62 3.292500 CTGCTCCTGCTCTGCACGA 62.293 63.158 0.00 0.00 40.48 4.35
63 64 2.436292 CCTGCTCCTGCTCTGCAC 60.436 66.667 0.00 0.00 40.48 4.57
69 70 1.719063 TTGGTTTCCCTGCTCCTGCT 61.719 55.000 0.00 0.00 40.48 4.24
70 71 0.827507 TTTGGTTTCCCTGCTCCTGC 60.828 55.000 0.00 0.00 40.20 4.85
71 72 0.961753 GTTTGGTTTCCCTGCTCCTG 59.038 55.000 0.00 0.00 0.00 3.86
72 73 0.178961 GGTTTGGTTTCCCTGCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
73 74 0.469144 TGGTTTGGTTTCCCTGCTCC 60.469 55.000 0.00 0.00 0.00 4.70
82 88 1.950973 AAGCGCCGTTGGTTTGGTTT 61.951 50.000 2.29 0.00 0.00 3.27
105 111 6.260936 AGAAAAATATCCTGCATCCGTACAAG 59.739 38.462 0.00 0.00 0.00 3.16
150 160 2.999739 GAACACTCGGCCCGGTCAAA 63.000 60.000 1.90 0.00 0.00 2.69
151 161 3.524648 GAACACTCGGCCCGGTCAA 62.525 63.158 1.90 0.00 0.00 3.18
152 162 3.998672 GAACACTCGGCCCGGTCA 61.999 66.667 1.90 0.00 0.00 4.02
153 163 3.998672 TGAACACTCGGCCCGGTC 61.999 66.667 1.90 0.00 0.00 4.79
154 164 4.309950 GTGAACACTCGGCCCGGT 62.310 66.667 1.90 0.00 0.00 5.28
155 165 3.934391 GAGTGAACACTCGGCCCGG 62.934 68.421 17.19 0.00 46.93 5.73
156 166 2.432628 GAGTGAACACTCGGCCCG 60.433 66.667 17.19 0.00 46.93 6.13
171 181 3.726631 GACGGCGACTCTGCTCGAG 62.727 68.421 16.62 8.45 45.56 4.04
192 202 4.014406 GGAGGTGTTTTAATTCCCGTGAT 58.986 43.478 0.00 0.00 0.00 3.06
208 225 2.923035 ACGGACAGGGTGGAGGTG 60.923 66.667 0.00 0.00 0.00 4.00
209 226 2.603776 GACGGACAGGGTGGAGGT 60.604 66.667 0.00 0.00 0.00 3.85
214 231 3.282745 CTGACGGACGGACAGGGTG 62.283 68.421 11.29 0.00 0.00 4.61
216 233 2.005960 GATCTGACGGACGGACAGGG 62.006 65.000 16.30 0.22 36.66 4.45
217 234 1.433879 GATCTGACGGACGGACAGG 59.566 63.158 16.30 4.12 36.66 4.00
240 257 4.081309 CCAGGTGAAAGGTTCCTATCGTAA 60.081 45.833 0.00 0.00 0.00 3.18
241 258 3.449737 CCAGGTGAAAGGTTCCTATCGTA 59.550 47.826 0.00 0.00 0.00 3.43
242 259 2.236395 CCAGGTGAAAGGTTCCTATCGT 59.764 50.000 0.00 0.00 0.00 3.73
243 260 2.906354 CCAGGTGAAAGGTTCCTATCG 58.094 52.381 0.00 0.00 0.00 2.92
244 261 2.239907 AGCCAGGTGAAAGGTTCCTATC 59.760 50.000 0.00 0.00 0.00 2.08
245 262 2.239907 GAGCCAGGTGAAAGGTTCCTAT 59.760 50.000 0.00 0.00 0.00 2.57
246 263 1.628846 GAGCCAGGTGAAAGGTTCCTA 59.371 52.381 0.00 0.00 0.00 2.94
247 264 0.402121 GAGCCAGGTGAAAGGTTCCT 59.598 55.000 0.00 0.00 0.00 3.36
249 268 1.981256 TTGAGCCAGGTGAAAGGTTC 58.019 50.000 0.00 0.00 35.89 3.62
265 284 9.859427 CAAACCAATTATGCTCTAAATCTTTGA 57.141 29.630 0.00 0.00 0.00 2.69
266 285 8.598075 GCAAACCAATTATGCTCTAAATCTTTG 58.402 33.333 0.00 0.00 37.12 2.77
267 286 8.534496 AGCAAACCAATTATGCTCTAAATCTTT 58.466 29.630 0.00 0.00 46.98 2.52
271 290 9.135189 TGATAGCAAACCAATTATGCTCTAAAT 57.865 29.630 2.36 0.00 46.98 1.40
272 291 8.518430 TGATAGCAAACCAATTATGCTCTAAA 57.482 30.769 2.36 0.00 46.98 1.85
275 294 6.377996 TGTTGATAGCAAACCAATTATGCTCT 59.622 34.615 2.36 0.00 46.98 4.09
278 297 7.775397 AATGTTGATAGCAAACCAATTATGC 57.225 32.000 0.00 0.00 40.34 3.14
279 298 8.605746 CCAAATGTTGATAGCAAACCAATTATG 58.394 33.333 0.00 0.00 35.42 1.90
280 299 7.280652 GCCAAATGTTGATAGCAAACCAATTAT 59.719 33.333 0.00 0.00 35.42 1.28
281 300 6.593382 GCCAAATGTTGATAGCAAACCAATTA 59.407 34.615 0.00 0.00 35.42 1.40
282 301 5.412286 GCCAAATGTTGATAGCAAACCAATT 59.588 36.000 0.00 0.00 35.42 2.32
286 305 3.924144 TGCCAAATGTTGATAGCAAACC 58.076 40.909 0.00 0.00 35.42 3.27
288 307 6.709397 TGATTTTGCCAAATGTTGATAGCAAA 59.291 30.769 0.00 4.01 40.77 3.68
289 308 6.228995 TGATTTTGCCAAATGTTGATAGCAA 58.771 32.000 0.00 0.00 34.88 3.91
290 309 5.791666 TGATTTTGCCAAATGTTGATAGCA 58.208 33.333 0.00 0.00 32.35 3.49
294 313 9.250624 CAATTTTTGATTTTGCCAAATGTTGAT 57.749 25.926 0.00 0.00 34.17 2.57
296 315 7.010183 TGCAATTTTTGATTTTGCCAAATGTTG 59.990 29.630 0.00 3.96 43.91 3.33
297 316 7.039882 TGCAATTTTTGATTTTGCCAAATGTT 58.960 26.923 0.00 0.00 43.91 2.71
298 317 6.570692 TGCAATTTTTGATTTTGCCAAATGT 58.429 28.000 0.00 0.00 43.91 2.71
299 318 7.010183 TGTTGCAATTTTTGATTTTGCCAAATG 59.990 29.630 0.59 0.00 43.91 2.32
300 319 7.039882 TGTTGCAATTTTTGATTTTGCCAAAT 58.960 26.923 0.59 0.00 43.91 2.32
301 320 6.392354 TGTTGCAATTTTTGATTTTGCCAAA 58.608 28.000 0.59 0.00 43.91 3.28
302 321 5.957798 TGTTGCAATTTTTGATTTTGCCAA 58.042 29.167 0.59 0.00 43.91 4.52
303 322 5.571784 TGTTGCAATTTTTGATTTTGCCA 57.428 30.435 0.59 0.00 43.91 4.92
304 323 7.338462 CAAATGTTGCAATTTTTGATTTTGCC 58.662 30.769 22.66 0.34 43.91 4.52
305 324 7.338462 CCAAATGTTGCAATTTTTGATTTTGC 58.662 30.769 26.14 0.00 44.59 3.68
306 325 7.010183 TGCCAAATGTTGCAATTTTTGATTTTG 59.990 29.630 26.14 15.94 33.87 2.44
307 326 7.039882 TGCCAAATGTTGCAATTTTTGATTTT 58.960 26.923 26.14 8.45 33.87 1.82
308 327 6.570692 TGCCAAATGTTGCAATTTTTGATTT 58.429 28.000 26.14 12.77 33.87 2.17
309 328 6.145338 TGCCAAATGTTGCAATTTTTGATT 57.855 29.167 26.14 8.80 33.87 2.57
310 329 5.769484 TGCCAAATGTTGCAATTTTTGAT 57.231 30.435 26.14 4.25 33.87 2.57
311 330 5.571784 TTGCCAAATGTTGCAATTTTTGA 57.428 30.435 26.14 12.97 42.19 2.69
319 338 1.070289 TGCAGATTGCCAAATGTTGCA 59.930 42.857 0.00 4.96 44.23 4.08
320 339 1.798283 TGCAGATTGCCAAATGTTGC 58.202 45.000 0.00 0.00 44.23 4.17
321 340 2.933906 GGATGCAGATTGCCAAATGTTG 59.066 45.455 0.00 0.00 44.23 3.33
322 341 2.568062 TGGATGCAGATTGCCAAATGTT 59.432 40.909 0.00 0.00 44.23 2.71
323 342 2.181125 TGGATGCAGATTGCCAAATGT 58.819 42.857 0.00 0.00 44.23 2.71
324 343 2.971660 TGGATGCAGATTGCCAAATG 57.028 45.000 0.00 0.00 44.23 2.32
325 344 2.035449 CGATGGATGCAGATTGCCAAAT 59.965 45.455 0.00 0.00 44.23 2.32
326 345 1.406180 CGATGGATGCAGATTGCCAAA 59.594 47.619 0.00 0.00 44.23 3.28
327 346 1.026584 CGATGGATGCAGATTGCCAA 58.973 50.000 0.00 0.00 44.23 4.52
328 347 0.820482 CCGATGGATGCAGATTGCCA 60.820 55.000 0.00 0.00 44.23 4.92
329 348 0.820891 ACCGATGGATGCAGATTGCC 60.821 55.000 0.00 0.00 44.23 4.52
330 349 1.027357 AACCGATGGATGCAGATTGC 58.973 50.000 0.00 0.00 45.29 3.56
331 350 2.947652 AGAAACCGATGGATGCAGATTG 59.052 45.455 0.00 0.00 0.00 2.67
332 351 3.287867 AGAAACCGATGGATGCAGATT 57.712 42.857 0.00 0.00 0.00 2.40
333 352 3.118112 AGAAGAAACCGATGGATGCAGAT 60.118 43.478 0.00 0.00 0.00 2.90
334 353 2.237143 AGAAGAAACCGATGGATGCAGA 59.763 45.455 0.00 0.00 0.00 4.26
335 354 2.353889 CAGAAGAAACCGATGGATGCAG 59.646 50.000 0.00 0.00 0.00 4.41
336 355 2.358957 CAGAAGAAACCGATGGATGCA 58.641 47.619 0.00 0.00 0.00 3.96
347 369 3.572584 CAGGCAGAAATGCAGAAGAAAC 58.427 45.455 2.29 0.00 36.33 2.78
387 409 3.000684 AGGAATAAGAAAACGGCCTCC 57.999 47.619 0.00 0.00 0.00 4.30
388 410 4.436986 CGAAAGGAATAAGAAAACGGCCTC 60.437 45.833 0.00 0.00 0.00 4.70
389 411 3.439129 CGAAAGGAATAAGAAAACGGCCT 59.561 43.478 0.00 0.00 0.00 5.19
390 412 3.754955 CGAAAGGAATAAGAAAACGGCC 58.245 45.455 0.00 0.00 0.00 6.13
435 461 7.418408 TCGTCATGTATCATACAGAAGAGAAC 58.582 38.462 3.38 0.00 42.77 3.01
446 472 4.561735 TGCGTTCTCGTCATGTATCATA 57.438 40.909 0.00 0.00 39.49 2.15
447 473 3.436700 TGCGTTCTCGTCATGTATCAT 57.563 42.857 0.00 0.00 39.49 2.45
448 474 2.931512 TGCGTTCTCGTCATGTATCA 57.068 45.000 0.00 0.00 39.49 2.15
449 475 4.267690 TCAATTGCGTTCTCGTCATGTATC 59.732 41.667 0.00 0.00 39.49 2.24
450 476 4.180817 TCAATTGCGTTCTCGTCATGTAT 58.819 39.130 0.00 0.00 39.49 2.29
451 477 3.580731 TCAATTGCGTTCTCGTCATGTA 58.419 40.909 0.00 0.00 39.49 2.29
452 478 2.412870 TCAATTGCGTTCTCGTCATGT 58.587 42.857 0.00 0.00 39.49 3.21
453 479 2.785681 GCTCAATTGCGTTCTCGTCATG 60.786 50.000 0.00 0.00 39.49 3.07
454 480 1.394917 GCTCAATTGCGTTCTCGTCAT 59.605 47.619 0.00 0.00 39.49 3.06
458 484 2.668457 ACTTAGCTCAATTGCGTTCTCG 59.332 45.455 0.00 0.00 38.13 4.04
466 492 5.742453 ACGTACGACATACTTAGCTCAATTG 59.258 40.000 24.41 0.00 0.00 2.32
500 541 6.758416 TCTCTTTCGGTATCAAACATCTGATG 59.242 38.462 15.83 15.83 36.69 3.07
501 542 6.878317 TCTCTTTCGGTATCAAACATCTGAT 58.122 36.000 0.00 0.00 39.41 2.90
511 553 4.020573 TGGCTTTTCTCTCTTTCGGTATCA 60.021 41.667 0.00 0.00 0.00 2.15
515 557 2.104963 ACTGGCTTTTCTCTCTTTCGGT 59.895 45.455 0.00 0.00 0.00 4.69
539 668 8.194769 TCAGACTTTCTTTATATACACGCATGA 58.805 33.333 0.00 0.00 0.00 3.07
545 674 7.042389 GCTGCCTCAGACTTTCTTTATATACAC 60.042 40.741 0.00 0.00 32.44 2.90
550 679 5.683876 AGCTGCCTCAGACTTTCTTTATA 57.316 39.130 0.00 0.00 32.44 0.98
554 683 3.867984 GCTTAGCTGCCTCAGACTTTCTT 60.868 47.826 0.00 0.00 32.44 2.52
555 684 2.354604 GCTTAGCTGCCTCAGACTTTCT 60.355 50.000 0.00 0.00 32.44 2.52
556 685 2.006169 GCTTAGCTGCCTCAGACTTTC 58.994 52.381 0.00 0.00 32.44 2.62
559 688 2.151502 TAGCTTAGCTGCCTCAGACT 57.848 50.000 17.97 0.00 40.10 3.24
560 689 2.820330 CTTAGCTTAGCTGCCTCAGAC 58.180 52.381 17.97 0.00 40.10 3.51
567 696 0.460284 TGGTCGCTTAGCTTAGCTGC 60.460 55.000 21.35 11.66 40.10 5.25
568 697 1.134965 AGTGGTCGCTTAGCTTAGCTG 60.135 52.381 21.35 14.82 40.10 4.24
569 698 1.134965 CAGTGGTCGCTTAGCTTAGCT 60.135 52.381 21.35 12.67 43.41 3.32
570 699 1.281899 CAGTGGTCGCTTAGCTTAGC 58.718 55.000 14.69 14.69 37.80 3.09
571 700 2.656560 ACAGTGGTCGCTTAGCTTAG 57.343 50.000 1.76 0.00 0.00 2.18
572 701 2.036733 ACAACAGTGGTCGCTTAGCTTA 59.963 45.455 1.76 0.00 0.00 3.09
573 702 1.202651 ACAACAGTGGTCGCTTAGCTT 60.203 47.619 1.76 0.00 0.00 3.74
635 1831 1.301716 GGTCCTCGTGCAAGCTGAA 60.302 57.895 0.00 0.00 0.00 3.02
671 1872 3.327404 TTGGAACGGGAGGAGGGC 61.327 66.667 0.00 0.00 0.00 5.19
829 2077 4.162509 AGAAGAGAAAAGGACGGATAAGGG 59.837 45.833 0.00 0.00 0.00 3.95
930 2218 0.037790 GAGGTGTGTGAGTGAGGAGC 60.038 60.000 0.00 0.00 0.00 4.70
935 2248 1.748403 GCTGGAGGTGTGTGAGTGA 59.252 57.895 0.00 0.00 0.00 3.41
937 2250 2.520536 GGGCTGGAGGTGTGTGAGT 61.521 63.158 0.00 0.00 0.00 3.41
941 2262 2.930562 GAGGGGCTGGAGGTGTGT 60.931 66.667 0.00 0.00 0.00 3.72
984 2439 3.261250 CATGGAGACTTGGCTTGCT 57.739 52.632 0.00 0.00 32.13 3.91
991 2446 1.811266 CCGCGTCCATGGAGACTTG 60.811 63.158 16.81 4.09 34.46 3.16
992 2447 2.283529 ACCGCGTCCATGGAGACTT 61.284 57.895 16.81 0.00 34.46 3.01
1074 3874 4.162690 GACGGGGAGCCGAAGCAT 62.163 66.667 0.00 0.00 43.56 3.79
1326 4186 5.808540 TCATACAGTTAAAAAGGACGATCGG 59.191 40.000 20.98 1.23 0.00 4.18
1328 4188 7.062605 TCGTTCATACAGTTAAAAAGGACGATC 59.937 37.037 0.00 0.00 0.00 3.69
1329 4189 6.869913 TCGTTCATACAGTTAAAAAGGACGAT 59.130 34.615 0.00 0.00 0.00 3.73
1330 4190 6.215121 TCGTTCATACAGTTAAAAAGGACGA 58.785 36.000 0.00 0.00 0.00 4.20
1341 4213 6.025749 TGATTCAGTCTCGTTCATACAGTT 57.974 37.500 0.00 0.00 0.00 3.16
1342 4214 5.184096 ACTGATTCAGTCTCGTTCATACAGT 59.816 40.000 13.61 0.00 41.21 3.55
1363 4241 5.928839 ACTGCTTTTACAGATGTAGTCACTG 59.071 40.000 0.00 0.00 40.25 3.66
1364 4242 6.102897 ACTGCTTTTACAGATGTAGTCACT 57.897 37.500 0.00 0.00 40.25 3.41
1365 4243 6.787085 AACTGCTTTTACAGATGTAGTCAC 57.213 37.500 0.00 0.00 40.25 3.67
1429 4351 6.128309 TGTGTAAGTACATGTTGCTATTGCTG 60.128 38.462 2.30 0.00 38.63 4.41
1516 7960 7.447238 TCGAACAAAACCAATTCTTTATCTCCT 59.553 33.333 0.00 0.00 0.00 3.69
1542 8014 7.757526 TGACGGTTCATCATCGAAAAATATTT 58.242 30.769 0.00 0.00 0.00 1.40
1552 8024 1.624487 TCGTTGACGGTTCATCATCG 58.376 50.000 3.48 0.00 39.51 3.84
1582 8066 4.579384 ACCCACACCACCAAGCCG 62.579 66.667 0.00 0.00 0.00 5.52
1683 11861 1.039785 TCGCTAGTCCTCTGCAGCAT 61.040 55.000 9.47 0.00 33.55 3.79
1696 11874 1.397343 TGACTGTTCGCTACTCGCTAG 59.603 52.381 0.00 0.00 38.27 3.42
1741 11924 3.724374 TCTTCGTCAGATTCGTTTGGTT 58.276 40.909 0.00 0.00 0.00 3.67
1757 11947 0.508641 CTGCACGAGTTGGTTCTTCG 59.491 55.000 0.00 0.00 0.00 3.79
1809 11999 5.702349 AGTGCAGAGGAAGATTTTTCTTG 57.298 39.130 0.00 0.00 0.00 3.02
1909 12495 5.063204 GGGGTGAATATGAAACATGATCGA 58.937 41.667 0.00 0.00 0.00 3.59
1910 12496 4.821260 TGGGGTGAATATGAAACATGATCG 59.179 41.667 0.00 0.00 0.00 3.69
1911 12497 6.322201 ACTTGGGGTGAATATGAAACATGATC 59.678 38.462 0.00 0.00 0.00 2.92
1912 12498 6.197168 ACTTGGGGTGAATATGAAACATGAT 58.803 36.000 0.00 0.00 0.00 2.45
2200 16189 2.100252 TCTAAGATTACAAGCCGACCGG 59.900 50.000 0.00 0.00 38.57 5.28
2236 16226 2.061848 TCAGAGGAATTCCACCCAACA 58.938 47.619 26.22 0.59 38.89 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.