Multiple sequence alignment - TraesCS7B01G423200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G423200 chr7B 100.000 6681 0 0 1 6681 692611905 692605225 0.000000e+00 12338.0
1 TraesCS7B01G423200 chr7B 90.400 375 32 4 5068 5442 65329606 65329976 2.170000e-134 490.0
2 TraesCS7B01G423200 chr7B 77.908 765 125 35 4936 5674 676139758 676140504 2.860000e-118 436.0
3 TraesCS7B01G423200 chr7A 93.445 6026 210 90 421 6340 699302066 699296120 0.000000e+00 8769.0
4 TraesCS7B01G423200 chr7A 81.022 274 32 10 1281 1554 46266299 46266046 4.090000e-47 200.0
5 TraesCS7B01G423200 chr7A 76.639 244 36 13 6392 6634 122913246 122913023 1.520000e-21 115.0
6 TraesCS7B01G423200 chr7D 95.897 3705 85 17 853 4520 607037497 607041171 0.000000e+00 5938.0
7 TraesCS7B01G423200 chr7D 95.910 1247 30 11 5103 6340 607041725 607042959 0.000000e+00 2001.0
8 TraesCS7B01G423200 chr7D 78.121 745 116 36 4965 5680 598013946 598013220 4.790000e-116 429.0
9 TraesCS7B01G423200 chr7D 82.735 446 52 13 3703 4145 598026564 598026141 2.280000e-99 374.0
10 TraesCS7B01G423200 chr7D 94.444 234 10 2 421 652 607036901 607037133 2.290000e-94 357.0
11 TraesCS7B01G423200 chr7D 80.157 383 59 14 4274 4650 598026071 598025700 3.070000e-68 270.0
12 TraesCS7B01G423200 chr7D 88.776 196 12 8 1 195 607036319 607036505 1.450000e-56 231.0
13 TraesCS7B01G423200 chr7D 82.791 215 24 11 204 416 607036645 607036848 5.320000e-41 180.0
14 TraesCS7B01G423200 chr7D 92.553 94 7 0 6341 6434 607042990 607043083 1.170000e-27 135.0
15 TraesCS7B01G423200 chr1B 90.643 513 45 2 3749 4260 35653113 35652603 0.000000e+00 678.0
16 TraesCS7B01G423200 chr1B 88.529 401 40 6 5021 5421 35652589 35652195 1.300000e-131 481.0
17 TraesCS7B01G423200 chr1B 97.436 39 0 1 1241 1279 650488866 650488829 1.560000e-06 65.8
18 TraesCS7B01G423200 chr1B 100.000 34 0 0 1246 1279 526244194 526244161 5.590000e-06 63.9
19 TraesCS7B01G423200 chr3B 88.831 385 37 6 5060 5442 70847925 70848305 1.010000e-127 468.0
20 TraesCS7B01G423200 chr3B 85.714 112 14 2 1181 1292 741677789 741677898 4.230000e-22 117.0
21 TraesCS7B01G423200 chrUn 77.821 771 127 35 4936 5680 459007429 459006677 2.860000e-118 436.0
22 TraesCS7B01G423200 chr5B 88.750 160 16 2 1774 1932 418458428 418458270 1.900000e-45 195.0
23 TraesCS7B01G423200 chr5B 83.929 112 15 1 3797 3908 443274504 443274612 3.300000e-18 104.0
24 TraesCS7B01G423200 chr5A 77.255 255 37 12 6392 6646 422446912 422446679 5.440000e-26 130.0
25 TraesCS7B01G423200 chr6A 90.000 100 2 4 3694 3787 528933168 528933265 9.100000e-24 122.0
26 TraesCS7B01G423200 chr5D 83.929 112 15 1 3797 3908 373209292 373209400 3.300000e-18 104.0
27 TraesCS7B01G423200 chr6D 80.208 96 15 2 1323 1418 273042476 273042567 1.200000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G423200 chr7B 692605225 692611905 6680 True 12338.000000 12338 100.0000 1 6681 1 chr7B.!!$R1 6680
1 TraesCS7B01G423200 chr7B 676139758 676140504 746 False 436.000000 436 77.9080 4936 5674 1 chr7B.!!$F2 738
2 TraesCS7B01G423200 chr7A 699296120 699302066 5946 True 8769.000000 8769 93.4450 421 6340 1 chr7A.!!$R3 5919
3 TraesCS7B01G423200 chr7D 607036319 607043083 6764 False 1473.666667 5938 91.7285 1 6434 6 chr7D.!!$F1 6433
4 TraesCS7B01G423200 chr7D 598013220 598013946 726 True 429.000000 429 78.1210 4965 5680 1 chr7D.!!$R1 715
5 TraesCS7B01G423200 chr7D 598025700 598026564 864 True 322.000000 374 81.4460 3703 4650 2 chr7D.!!$R2 947
6 TraesCS7B01G423200 chr1B 35652195 35653113 918 True 579.500000 678 89.5860 3749 5421 2 chr1B.!!$R3 1672
7 TraesCS7B01G423200 chrUn 459006677 459007429 752 True 436.000000 436 77.8210 4936 5680 1 chrUn.!!$R1 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 1276 0.187606 GAGGTGAGGGGGTTTGGTTT 59.812 55.000 0.00 0.00 0.00 3.27 F
1701 2079 0.322816 TCTTCACCAATGCTGCTCCC 60.323 55.000 0.00 0.00 0.00 4.30 F
2847 3243 0.960364 CCAGTTATGTTGCCGCCACT 60.960 55.000 0.00 0.00 0.00 4.00 F
3204 3600 1.344114 TGCAAAGGGCCAGATTTGAAC 59.656 47.619 23.82 12.14 43.89 3.18 F
4959 5571 2.095212 GGCTTCCCTTTTAGTTCTTGCG 60.095 50.000 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2847 3243 0.969917 GCACACCCACATGCCCAATA 60.970 55.000 0.00 0.0 35.73 1.90 R
3573 3971 1.009829 GCTAACCTGCACATTCCTCG 58.990 55.000 0.00 0.0 0.00 4.63 R
4776 5226 0.246635 CCTTCCAGTGTCGACGGAAT 59.753 55.000 19.57 0.0 35.56 3.01 R
5000 5624 1.079405 GCCGGTCGATCCAGTTTGA 60.079 57.895 1.90 0.0 35.57 2.69 R
6468 7174 0.318120 TTACGAACCCAAGGGACGAC 59.682 55.000 25.71 9.7 39.81 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 6.633500 TTGCATGCAACCTAATTAGGATAC 57.367 37.500 33.60 19.54 46.63 2.24
145 146 0.817013 AAAATAGCCCATGCACCACG 59.183 50.000 0.00 0.00 41.13 4.94
152 153 1.666209 CCCATGCACCACGGGAAATC 61.666 60.000 6.50 0.00 43.21 2.17
166 167 4.104776 CGGGAAATCATTTGCATGTACAC 58.895 43.478 3.82 0.00 32.01 2.90
167 168 4.380339 CGGGAAATCATTTGCATGTACACA 60.380 41.667 3.82 0.00 32.01 3.72
195 196 9.800433 GATGTCACTATGATCCTATTGATGTAG 57.200 37.037 2.26 0.00 32.41 2.74
198 199 8.031864 GTCACTATGATCCTATTGATGTAGGTG 58.968 40.741 2.26 0.00 41.65 4.00
199 200 7.730332 TCACTATGATCCTATTGATGTAGGTGT 59.270 37.037 0.00 0.00 41.65 4.16
203 204 7.669089 TGATCCTATTGATGTAGGTGTACAA 57.331 36.000 0.00 0.00 42.54 2.41
206 207 9.561069 GATCCTATTGATGTAGGTGTACAAATT 57.439 33.333 0.00 0.00 42.54 1.82
207 208 9.920946 ATCCTATTGATGTAGGTGTACAAATTT 57.079 29.630 0.00 0.00 42.54 1.82
208 209 9.747898 TCCTATTGATGTAGGTGTACAAATTTT 57.252 29.630 0.00 0.00 42.54 1.82
209 210 9.787532 CCTATTGATGTAGGTGTACAAATTTTG 57.212 33.333 7.59 7.59 42.54 2.44
219 350 5.394322 GGTGTACAAATTTTGTTTCTCGACG 59.606 40.000 19.15 0.00 42.22 5.12
228 359 0.784778 GTTTCTCGACGCCTGTTCAG 59.215 55.000 0.00 0.00 0.00 3.02
244 375 1.136828 TCAGCACCAACCAACTACCT 58.863 50.000 0.00 0.00 0.00 3.08
246 377 2.706723 TCAGCACCAACCAACTACCTTA 59.293 45.455 0.00 0.00 0.00 2.69
248 379 3.689649 CAGCACCAACCAACTACCTTATC 59.310 47.826 0.00 0.00 0.00 1.75
249 380 2.676342 GCACCAACCAACTACCTTATCG 59.324 50.000 0.00 0.00 0.00 2.92
250 381 3.867216 GCACCAACCAACTACCTTATCGT 60.867 47.826 0.00 0.00 0.00 3.73
251 382 3.682858 CACCAACCAACTACCTTATCGTG 59.317 47.826 0.00 0.00 0.00 4.35
252 383 3.325716 ACCAACCAACTACCTTATCGTGT 59.674 43.478 0.00 0.00 0.00 4.49
253 384 3.682858 CCAACCAACTACCTTATCGTGTG 59.317 47.826 0.00 0.00 0.00 3.82
254 385 2.968675 ACCAACTACCTTATCGTGTGC 58.031 47.619 0.00 0.00 0.00 4.57
256 387 3.244284 ACCAACTACCTTATCGTGTGCAA 60.244 43.478 0.00 0.00 0.00 4.08
257 388 3.938963 CCAACTACCTTATCGTGTGCAAT 59.061 43.478 0.00 0.00 0.00 3.56
258 389 4.394920 CCAACTACCTTATCGTGTGCAATT 59.605 41.667 0.00 0.00 0.00 2.32
259 390 5.583061 CCAACTACCTTATCGTGTGCAATTA 59.417 40.000 0.00 0.00 0.00 1.40
260 391 6.092944 CCAACTACCTTATCGTGTGCAATTAA 59.907 38.462 0.00 0.00 0.00 1.40
261 392 7.361371 CCAACTACCTTATCGTGTGCAATTAAA 60.361 37.037 0.00 0.00 0.00 1.52
262 393 7.859325 ACTACCTTATCGTGTGCAATTAAAT 57.141 32.000 0.00 0.00 0.00 1.40
291 422 8.771521 AATCATCATTGGATTCCTTCAATACA 57.228 30.769 3.95 0.00 32.93 2.29
292 423 7.572523 TCATCATTGGATTCCTTCAATACAC 57.427 36.000 3.95 0.00 34.75 2.90
293 424 7.348815 TCATCATTGGATTCCTTCAATACACT 58.651 34.615 3.95 0.00 34.75 3.55
294 425 7.835682 TCATCATTGGATTCCTTCAATACACTT 59.164 33.333 3.95 0.00 34.75 3.16
295 426 7.395190 TCATTGGATTCCTTCAATACACTTG 57.605 36.000 3.95 0.00 34.75 3.16
327 458 7.545965 ACGTTCCACATCAACAAAACAATTTTA 59.454 29.630 0.00 0.00 0.00 1.52
328 459 8.547069 CGTTCCACATCAACAAAACAATTTTAT 58.453 29.630 0.00 0.00 0.00 1.40
393 526 3.923864 TGGCGACGCAGGTGAACT 61.924 61.111 23.09 0.00 0.00 3.01
400 533 2.027625 CGCAGGTGAACTTCCGACC 61.028 63.158 0.00 0.00 0.00 4.79
403 536 2.222013 AGGTGAACTTCCGACCCCC 61.222 63.158 0.00 0.00 0.00 5.40
412 545 0.682209 TTCCGACCCCCTCTAGAACG 60.682 60.000 0.00 0.00 0.00 3.95
416 549 3.162154 CCCCCTCTAGAACGCCCC 61.162 72.222 0.00 0.00 0.00 5.80
417 550 3.162154 CCCCTCTAGAACGCCCCC 61.162 72.222 0.00 0.00 0.00 5.40
483 664 0.673644 AACACGAATGGCCTCTTCCG 60.674 55.000 3.32 3.09 0.00 4.30
501 682 0.798776 CGCAACAGACCCACAGATTC 59.201 55.000 0.00 0.00 0.00 2.52
510 691 2.962421 GACCCACAGATTCAAAACCCAA 59.038 45.455 0.00 0.00 0.00 4.12
562 745 2.650778 GCAAACAGAAAGGGGGCG 59.349 61.111 0.00 0.00 0.00 6.13
629 812 1.304962 ACGGGAAAATCCAAGGCCC 60.305 57.895 0.00 0.00 38.64 5.80
646 829 6.452242 CAAGGCCCGGAAAATATATAAAACC 58.548 40.000 0.73 0.00 0.00 3.27
652 835 4.378666 CGGAAAATATATAAAACCGGGGCG 60.379 45.833 6.32 0.00 36.08 6.13
679 871 2.025441 CCAACGCCAACACCAACG 59.975 61.111 0.00 0.00 0.00 4.10
684 876 4.025401 GCCAACACCAACGCCGAG 62.025 66.667 0.00 0.00 0.00 4.63
685 877 4.025401 CCAACACCAACGCCGAGC 62.025 66.667 0.00 0.00 0.00 5.03
686 878 4.025401 CAACACCAACGCCGAGCC 62.025 66.667 0.00 0.00 0.00 4.70
687 879 4.555709 AACACCAACGCCGAGCCA 62.556 61.111 0.00 0.00 0.00 4.75
688 880 4.988598 ACACCAACGCCGAGCCAG 62.989 66.667 0.00 0.00 0.00 4.85
800 995 4.825679 CTCCCCACTCCCCTCCCC 62.826 77.778 0.00 0.00 0.00 4.81
805 1000 4.733725 CACTCCCCTCCCCCGGAA 62.734 72.222 0.73 0.00 0.00 4.30
892 1258 2.457323 GGGTTCCTGGTGGTGTGGA 61.457 63.158 0.00 0.00 34.23 4.02
910 1276 0.187606 GAGGTGAGGGGGTTTGGTTT 59.812 55.000 0.00 0.00 0.00 3.27
952 1318 0.399519 GGGTTAGATCCGGGGAAGGA 60.400 60.000 0.00 0.00 45.54 3.36
1540 1918 2.581354 CCGTGCCTTCCTCTGGAG 59.419 66.667 0.00 0.00 31.21 3.86
1701 2079 0.322816 TCTTCACCAATGCTGCTCCC 60.323 55.000 0.00 0.00 0.00 4.30
1784 2168 4.856801 ACACCCGCATCCGCATCC 62.857 66.667 0.00 0.00 38.40 3.51
1785 2169 4.854924 CACCCGCATCCGCATCCA 62.855 66.667 0.00 0.00 38.40 3.41
1786 2170 4.856801 ACCCGCATCCGCATCCAC 62.857 66.667 0.00 0.00 38.40 4.02
1787 2171 4.854924 CCCGCATCCGCATCCACA 62.855 66.667 0.00 0.00 38.40 4.17
1788 2172 2.592574 CCGCATCCGCATCCACAT 60.593 61.111 0.00 0.00 38.40 3.21
1789 2173 2.610694 CCGCATCCGCATCCACATC 61.611 63.158 0.00 0.00 38.40 3.06
1933 2317 4.379813 GGTTTCAGGACTGCAATATGTGTG 60.380 45.833 0.00 0.00 0.00 3.82
2411 2807 1.972872 CATGGAATGGCTCAGTACCC 58.027 55.000 0.00 0.00 41.79 3.69
2415 2811 2.116238 GGAATGGCTCAGTACCCAGTA 58.884 52.381 0.00 0.00 34.01 2.74
2583 2979 3.576982 GGATGATGGATTCACTACGGGTA 59.423 47.826 0.00 0.00 37.11 3.69
2625 3021 2.238646 TCCCGAACAAAGGATGTATGCT 59.761 45.455 0.00 0.00 42.99 3.79
2652 3048 1.201414 GGTTTACCCCAGAATGCAACG 59.799 52.381 0.00 0.00 31.97 4.10
2709 3105 1.329906 GATGTCAGCGAGCCAAAGATG 59.670 52.381 0.00 0.00 0.00 2.90
2844 3240 2.414785 CCCCAGTTATGTTGCCGCC 61.415 63.158 0.00 0.00 0.00 6.13
2847 3243 0.960364 CCAGTTATGTTGCCGCCACT 60.960 55.000 0.00 0.00 0.00 4.00
2923 3319 5.777732 ACAAAAGCCACTATTAACCCAATGA 59.222 36.000 0.00 0.00 0.00 2.57
3204 3600 1.344114 TGCAAAGGGCCAGATTTGAAC 59.656 47.619 23.82 12.14 43.89 3.18
3276 3672 4.978580 GCTCAGTTTGTCAAAGGTTCAATC 59.021 41.667 0.00 0.00 0.00 2.67
3277 3673 5.450412 GCTCAGTTTGTCAAAGGTTCAATCA 60.450 40.000 0.00 0.00 0.00 2.57
3577 3975 7.765307 TCAGTACTTAATAACCTAACACGAGG 58.235 38.462 0.00 0.00 42.89 4.63
3682 4080 9.924650 GTTACAGTCAGGAACTCTTTATCTTTA 57.075 33.333 0.00 0.00 34.60 1.85
3802 4219 7.201821 GGAACTTTTGGAACTGTATATCATGGG 60.202 40.741 0.00 0.00 0.00 4.00
4293 4710 6.261826 ACTTATAATCCAACATGAAGCTGAGC 59.738 38.462 0.00 0.00 0.00 4.26
4309 4726 6.107901 AGCTGAGCCGATTAATATTCTCTT 57.892 37.500 0.00 0.00 0.00 2.85
4479 4896 5.105797 CCAATATGCAAGGTAAGAACTGCAA 60.106 40.000 0.00 0.00 35.86 4.08
4498 4915 9.893305 AACTGCAATTATTCTGTTTTGTACTAC 57.107 29.630 0.00 0.00 0.00 2.73
4542 4959 8.147058 TCATTGCTAGACTATTGATTCTTCTCC 58.853 37.037 0.00 0.00 0.00 3.71
4559 4976 8.668510 TTCTTCTCCTCTGTATCATATTTTGC 57.331 34.615 0.00 0.00 0.00 3.68
4655 5073 6.043243 TCAATCTCCCCTCATACTTGGAATAC 59.957 42.308 0.00 0.00 0.00 1.89
4660 5078 4.130118 CCCTCATACTTGGAATACACAGC 58.870 47.826 0.00 0.00 0.00 4.40
4695 5135 7.012704 GTGATAATCATATGGACTGTTGCTTGT 59.987 37.037 2.13 0.00 0.00 3.16
4750 5192 6.542370 CACAATTGATTTAGATTAGTCCGGGT 59.458 38.462 13.59 0.00 0.00 5.28
4840 5292 7.679638 GCATGGCTACTAACAATAAACTCCTTG 60.680 40.741 0.00 0.00 0.00 3.61
4879 5487 6.998968 TTTGTTTGCCATCTGAATTTTGTT 57.001 29.167 0.00 0.00 0.00 2.83
4959 5571 2.095212 GGCTTCCCTTTTAGTTCTTGCG 60.095 50.000 0.00 0.00 0.00 4.85
5000 5624 7.121611 TGAAATATTGCTCATGTGAACTGTCAT 59.878 33.333 0.00 0.00 35.80 3.06
5268 5896 1.934589 TCATATTGCTTCCGTGTCCG 58.065 50.000 0.00 0.00 0.00 4.79
5449 6103 0.469917 ACAATCAGCCATACCCTCGG 59.530 55.000 0.00 0.00 0.00 4.63
5495 6149 3.194542 GGTCAGAGTCTGATGTAAGCTGT 59.805 47.826 25.17 0.00 42.73 4.40
5498 6152 4.281941 TCAGAGTCTGATGTAAGCTGTTGT 59.718 41.667 19.10 0.00 35.39 3.32
5563 6218 2.202797 CCTGACTCATGCGACCCG 60.203 66.667 0.00 0.00 0.00 5.28
5638 6293 1.811266 CTTCACCCAGATCGCCGTG 60.811 63.158 3.52 3.52 0.00 4.94
5726 6381 1.622132 TTCTGGGGCCATCCATCCA 60.622 57.895 4.39 0.00 36.05 3.41
5727 6382 1.000590 TTCTGGGGCCATCCATCCAT 61.001 55.000 4.39 0.00 36.05 3.41
5728 6383 1.076192 CTGGGGCCATCCATCCATC 59.924 63.158 4.39 0.00 36.05 3.51
5729 6384 2.436596 CTGGGGCCATCCATCCATCC 62.437 65.000 4.39 0.00 36.05 3.51
5746 6401 2.814280 TCCGTCTTGGACAAGTTCTC 57.186 50.000 11.44 1.99 43.74 2.87
5843 6503 4.720902 TGCGTCGGTCGGTCCCTA 62.721 66.667 0.00 0.00 40.26 3.53
5844 6504 3.885521 GCGTCGGTCGGTCCCTAG 61.886 72.222 0.00 0.00 40.26 3.02
5845 6505 3.207669 CGTCGGTCGGTCCCTAGG 61.208 72.222 0.06 0.06 35.71 3.02
5846 6506 2.832201 GTCGGTCGGTCCCTAGGG 60.832 72.222 23.22 23.22 0.00 3.53
5847 6507 3.341629 TCGGTCGGTCCCTAGGGT 61.342 66.667 27.58 0.00 36.47 4.34
5885 6547 7.838696 TGTTCATACCCCTTCATTGTTTCATAT 59.161 33.333 0.00 0.00 0.00 1.78
5920 6582 2.040043 ATGAGCCCTCCCTCCCAG 60.040 66.667 0.00 0.00 0.00 4.45
6018 6680 2.959071 GCTTAGAGGCGCGCTGAG 60.959 66.667 32.29 18.17 0.00 3.35
6180 6854 4.518590 TGGTGATGAACTGGTTGTGTAATG 59.481 41.667 0.00 0.00 0.00 1.90
6246 6921 6.260936 GTCCTATGTTGCTTGTATATGCTTGT 59.739 38.462 0.00 0.00 0.00 3.16
6377 7083 0.952497 TTCTGCCTGAAAGAGCTGCG 60.952 55.000 0.00 0.00 34.07 5.18
6379 7085 3.808656 GCCTGAAAGAGCTGCGGC 61.809 66.667 10.33 10.33 34.07 6.53
6390 7096 2.459442 GCTGCGGCTGCTCTACTTG 61.459 63.158 22.46 1.50 43.34 3.16
6402 7108 1.909302 CTCTACTTGGGGCTCCTTTGA 59.091 52.381 3.07 0.00 0.00 2.69
6437 7143 7.325725 TCCTATAGGGTATTTTTCTTAGGGC 57.674 40.000 18.97 0.00 36.25 5.19
6438 7144 7.086920 TCCTATAGGGTATTTTTCTTAGGGCT 58.913 38.462 18.97 0.00 36.25 5.19
6439 7145 7.237055 TCCTATAGGGTATTTTTCTTAGGGCTC 59.763 40.741 18.97 0.00 36.25 4.70
6440 7146 4.521536 AGGGTATTTTTCTTAGGGCTCC 57.478 45.455 0.00 0.00 0.00 4.70
6441 7147 4.119918 AGGGTATTTTTCTTAGGGCTCCT 58.880 43.478 0.00 0.00 37.71 3.69
6442 7148 4.544559 AGGGTATTTTTCTTAGGGCTCCTT 59.455 41.667 0.00 0.00 34.61 3.36
6443 7149 4.645136 GGGTATTTTTCTTAGGGCTCCTTG 59.355 45.833 0.00 0.00 34.61 3.61
6444 7150 4.645136 GGTATTTTTCTTAGGGCTCCTTGG 59.355 45.833 0.00 0.00 34.61 3.61
6445 7151 4.675063 ATTTTTCTTAGGGCTCCTTGGA 57.325 40.909 0.00 0.00 34.61 3.53
6446 7152 4.463050 TTTTTCTTAGGGCTCCTTGGAA 57.537 40.909 0.00 2.79 34.61 3.53
6447 7153 3.721087 TTTCTTAGGGCTCCTTGGAAG 57.279 47.619 0.00 0.00 34.61 3.46
6448 7154 2.344093 TCTTAGGGCTCCTTGGAAGT 57.656 50.000 0.00 0.00 34.61 3.01
6449 7155 2.188817 TCTTAGGGCTCCTTGGAAGTC 58.811 52.381 0.00 0.00 34.61 3.01
6450 7156 1.210722 CTTAGGGCTCCTTGGAAGTCC 59.789 57.143 0.00 0.00 38.88 3.85
6451 7157 1.162085 AGGGCTCCTTGGAAGTCCT 59.838 57.895 6.49 6.49 44.08 3.85
6452 7158 0.476611 AGGGCTCCTTGGAAGTCCTT 60.477 55.000 6.49 0.00 46.78 3.36
6453 7159 0.322906 GGGCTCCTTGGAAGTCCTTG 60.323 60.000 0.00 0.00 35.55 3.61
6454 7160 0.322906 GGCTCCTTGGAAGTCCTTGG 60.323 60.000 0.00 1.33 36.82 3.61
6455 7161 0.322906 GCTCCTTGGAAGTCCTTGGG 60.323 60.000 0.00 0.00 36.82 4.12
6456 7162 1.362224 CTCCTTGGAAGTCCTTGGGA 58.638 55.000 0.00 3.23 36.82 4.37
6457 7163 1.705186 CTCCTTGGAAGTCCTTGGGAA 59.295 52.381 0.00 0.00 36.82 3.97
6458 7164 2.310052 CTCCTTGGAAGTCCTTGGGAAT 59.690 50.000 0.00 0.00 36.82 3.01
6459 7165 2.721906 TCCTTGGAAGTCCTTGGGAATT 59.278 45.455 0.00 0.00 42.94 2.17
6460 7166 3.142028 TCCTTGGAAGTCCTTGGGAATTT 59.858 43.478 0.89 0.00 40.23 1.82
6461 7167 3.903714 CCTTGGAAGTCCTTGGGAATTTT 59.096 43.478 0.89 0.00 40.23 1.82
6462 7168 4.347876 CCTTGGAAGTCCTTGGGAATTTTT 59.652 41.667 0.89 0.00 40.23 1.94
6463 7169 5.511373 CCTTGGAAGTCCTTGGGAATTTTTC 60.511 44.000 0.89 0.00 40.23 2.29
6464 7170 4.814967 TGGAAGTCCTTGGGAATTTTTCT 58.185 39.130 0.89 0.00 40.23 2.52
6465 7171 5.215845 TGGAAGTCCTTGGGAATTTTTCTT 58.784 37.500 0.89 0.00 40.23 2.52
6466 7172 6.377912 TGGAAGTCCTTGGGAATTTTTCTTA 58.622 36.000 0.89 0.00 40.23 2.10
6467 7173 7.016296 TGGAAGTCCTTGGGAATTTTTCTTAT 58.984 34.615 0.89 0.00 40.23 1.73
6468 7174 7.039082 TGGAAGTCCTTGGGAATTTTTCTTATG 60.039 37.037 0.89 0.00 40.23 1.90
6469 7175 7.039011 GGAAGTCCTTGGGAATTTTTCTTATGT 60.039 37.037 0.89 0.00 40.23 2.29
6470 7176 7.468141 AGTCCTTGGGAATTTTTCTTATGTC 57.532 36.000 0.00 0.00 31.38 3.06
6471 7177 6.151144 AGTCCTTGGGAATTTTTCTTATGTCG 59.849 38.462 0.00 0.00 31.38 4.35
6472 7178 6.007703 TCCTTGGGAATTTTTCTTATGTCGT 58.992 36.000 0.00 0.00 0.00 4.34
6473 7179 6.150474 TCCTTGGGAATTTTTCTTATGTCGTC 59.850 38.462 0.00 0.00 0.00 4.20
6474 7180 5.890424 TGGGAATTTTTCTTATGTCGTCC 57.110 39.130 0.00 0.00 0.00 4.79
6475 7181 4.703093 TGGGAATTTTTCTTATGTCGTCCC 59.297 41.667 0.00 0.00 42.21 4.46
6476 7182 4.948004 GGGAATTTTTCTTATGTCGTCCCT 59.052 41.667 0.00 0.00 39.33 4.20
6477 7183 5.417894 GGGAATTTTTCTTATGTCGTCCCTT 59.582 40.000 0.00 0.00 39.33 3.95
6478 7184 6.322491 GGAATTTTTCTTATGTCGTCCCTTG 58.678 40.000 0.00 0.00 0.00 3.61
6479 7185 5.897377 ATTTTTCTTATGTCGTCCCTTGG 57.103 39.130 0.00 0.00 0.00 3.61
6480 7186 3.343941 TTTCTTATGTCGTCCCTTGGG 57.656 47.619 0.00 0.00 0.00 4.12
6481 7187 1.946984 TCTTATGTCGTCCCTTGGGT 58.053 50.000 5.51 0.00 0.00 4.51
6482 7188 2.262637 TCTTATGTCGTCCCTTGGGTT 58.737 47.619 5.51 0.00 0.00 4.11
6483 7189 2.235402 TCTTATGTCGTCCCTTGGGTTC 59.765 50.000 5.51 0.24 0.00 3.62
6484 7190 0.533491 TATGTCGTCCCTTGGGTTCG 59.467 55.000 5.51 11.57 0.00 3.95
6485 7191 1.477685 ATGTCGTCCCTTGGGTTCGT 61.478 55.000 18.53 4.80 0.00 3.85
6486 7192 0.827089 TGTCGTCCCTTGGGTTCGTA 60.827 55.000 18.53 10.90 0.00 3.43
6487 7193 0.318120 GTCGTCCCTTGGGTTCGTAA 59.682 55.000 18.53 5.30 0.00 3.18
6488 7194 1.066645 GTCGTCCCTTGGGTTCGTAAT 60.067 52.381 18.53 0.00 0.00 1.89
6489 7195 2.166254 GTCGTCCCTTGGGTTCGTAATA 59.834 50.000 18.53 4.55 0.00 0.98
6490 7196 2.428171 TCGTCCCTTGGGTTCGTAATAG 59.572 50.000 18.53 0.00 0.00 1.73
6491 7197 2.482490 CGTCCCTTGGGTTCGTAATAGG 60.482 54.545 5.51 0.00 0.00 2.57
6492 7198 2.767960 GTCCCTTGGGTTCGTAATAGGA 59.232 50.000 5.51 0.00 0.00 2.94
6493 7199 3.390311 GTCCCTTGGGTTCGTAATAGGAT 59.610 47.826 5.51 0.00 0.00 3.24
6494 7200 4.042174 TCCCTTGGGTTCGTAATAGGATT 58.958 43.478 5.51 0.00 0.00 3.01
6495 7201 4.134563 CCCTTGGGTTCGTAATAGGATTG 58.865 47.826 0.00 0.00 0.00 2.67
6496 7202 4.141574 CCCTTGGGTTCGTAATAGGATTGA 60.142 45.833 0.00 0.00 0.00 2.57
6497 7203 5.433526 CCTTGGGTTCGTAATAGGATTGAA 58.566 41.667 0.00 0.00 0.00 2.69
6498 7204 6.062095 CCTTGGGTTCGTAATAGGATTGAAT 58.938 40.000 0.00 0.00 0.00 2.57
6499 7205 6.546034 CCTTGGGTTCGTAATAGGATTGAATT 59.454 38.462 0.00 0.00 0.00 2.17
6500 7206 7.255139 CCTTGGGTTCGTAATAGGATTGAATTC 60.255 40.741 0.00 0.00 0.00 2.17
6501 7207 6.059484 TGGGTTCGTAATAGGATTGAATTCC 58.941 40.000 2.27 0.00 35.90 3.01
6502 7208 6.059484 GGGTTCGTAATAGGATTGAATTCCA 58.941 40.000 2.27 0.00 38.32 3.53
6503 7209 6.715264 GGGTTCGTAATAGGATTGAATTCCAT 59.285 38.462 2.27 0.00 38.32 3.41
6504 7210 7.881232 GGGTTCGTAATAGGATTGAATTCCATA 59.119 37.037 2.27 0.00 38.32 2.74
6505 7211 8.936864 GGTTCGTAATAGGATTGAATTCCATAG 58.063 37.037 2.27 0.00 38.32 2.23
6506 7212 8.936864 GTTCGTAATAGGATTGAATTCCATAGG 58.063 37.037 2.27 0.00 38.32 2.57
6507 7213 7.620880 TCGTAATAGGATTGAATTCCATAGGG 58.379 38.462 2.27 0.00 38.32 3.53
6508 7214 6.823689 CGTAATAGGATTGAATTCCATAGGGG 59.176 42.308 2.27 0.00 38.32 4.79
6509 7215 6.803587 AATAGGATTGAATTCCATAGGGGT 57.196 37.500 2.27 0.00 38.32 4.95
6510 7216 6.803587 ATAGGATTGAATTCCATAGGGGTT 57.196 37.500 2.27 0.00 38.32 4.11
6511 7217 5.487861 AGGATTGAATTCCATAGGGGTTT 57.512 39.130 2.27 0.00 38.32 3.27
6512 7218 5.853700 AGGATTGAATTCCATAGGGGTTTT 58.146 37.500 2.27 0.00 38.32 2.43
6513 7219 6.271537 AGGATTGAATTCCATAGGGGTTTTT 58.728 36.000 2.27 0.00 38.32 1.94
6514 7220 6.384015 AGGATTGAATTCCATAGGGGTTTTTC 59.616 38.462 2.27 0.00 38.32 2.29
6515 7221 6.156083 GGATTGAATTCCATAGGGGTTTTTCA 59.844 38.462 2.27 0.00 38.11 2.69
6516 7222 7.147497 GGATTGAATTCCATAGGGGTTTTTCAT 60.147 37.037 2.27 0.00 38.11 2.57
6517 7223 8.852671 ATTGAATTCCATAGGGGTTTTTCATA 57.147 30.769 2.27 0.00 38.11 2.15
6518 7224 8.852671 TTGAATTCCATAGGGGTTTTTCATAT 57.147 30.769 2.27 0.00 38.11 1.78
6519 7225 8.248904 TGAATTCCATAGGGGTTTTTCATATG 57.751 34.615 2.27 0.00 38.11 1.78
6520 7226 8.064389 TGAATTCCATAGGGGTTTTTCATATGA 58.936 33.333 0.00 0.00 38.11 2.15
6521 7227 8.852671 AATTCCATAGGGGTTTTTCATATGAA 57.147 30.769 14.23 14.23 38.11 2.57
6522 7228 8.852671 ATTCCATAGGGGTTTTTCATATGAAA 57.147 30.769 23.86 23.86 38.89 2.69
6523 7229 8.852671 TTCCATAGGGGTTTTTCATATGAAAT 57.147 30.769 27.11 15.81 39.65 2.17
6524 7230 9.944079 TTCCATAGGGGTTTTTCATATGAAATA 57.056 29.630 27.11 20.88 39.65 1.40
6568 7274 6.730960 TTCGTAGGAAATGTAAACATCCAC 57.269 37.500 5.73 2.25 35.10 4.02
6569 7275 6.045072 TCGTAGGAAATGTAAACATCCACT 57.955 37.500 5.73 3.20 35.10 4.00
6570 7276 6.103997 TCGTAGGAAATGTAAACATCCACTC 58.896 40.000 5.73 0.00 35.10 3.51
6571 7277 6.070995 TCGTAGGAAATGTAAACATCCACTCT 60.071 38.462 5.73 0.00 35.10 3.24
6572 7278 7.123098 TCGTAGGAAATGTAAACATCCACTCTA 59.877 37.037 5.73 0.00 35.10 2.43
6573 7279 7.762615 CGTAGGAAATGTAAACATCCACTCTAA 59.237 37.037 5.73 0.00 35.10 2.10
6574 7280 7.923414 AGGAAATGTAAACATCCACTCTAAC 57.077 36.000 5.73 0.00 35.10 2.34
6575 7281 6.884836 AGGAAATGTAAACATCCACTCTAACC 59.115 38.462 5.73 0.00 35.10 2.85
6576 7282 6.884836 GGAAATGTAAACATCCACTCTAACCT 59.115 38.462 0.00 0.00 35.10 3.50
6577 7283 7.393515 GGAAATGTAAACATCCACTCTAACCTT 59.606 37.037 0.00 0.00 35.10 3.50
6578 7284 7.923414 AATGTAAACATCCACTCTAACCTTC 57.077 36.000 0.00 0.00 35.10 3.46
6579 7285 6.681729 TGTAAACATCCACTCTAACCTTCT 57.318 37.500 0.00 0.00 0.00 2.85
6580 7286 7.786046 TGTAAACATCCACTCTAACCTTCTA 57.214 36.000 0.00 0.00 0.00 2.10
6581 7287 8.375493 TGTAAACATCCACTCTAACCTTCTAT 57.625 34.615 0.00 0.00 0.00 1.98
6582 7288 8.822805 TGTAAACATCCACTCTAACCTTCTATT 58.177 33.333 0.00 0.00 0.00 1.73
6585 7291 8.840200 AACATCCACTCTAACCTTCTATTAGA 57.160 34.615 0.00 0.00 36.52 2.10
6606 7312 6.382869 AGAGTTTCTTTGTCTTTCATGTGG 57.617 37.500 0.00 0.00 0.00 4.17
6607 7313 4.936891 AGTTTCTTTGTCTTTCATGTGGC 58.063 39.130 0.00 0.00 0.00 5.01
6608 7314 4.402155 AGTTTCTTTGTCTTTCATGTGGCA 59.598 37.500 0.00 0.00 0.00 4.92
6609 7315 5.069516 AGTTTCTTTGTCTTTCATGTGGCAT 59.930 36.000 0.00 0.00 0.00 4.40
6610 7316 4.771590 TCTTTGTCTTTCATGTGGCATC 57.228 40.909 0.00 0.00 0.00 3.91
6611 7317 4.143543 TCTTTGTCTTTCATGTGGCATCA 58.856 39.130 0.00 0.00 0.00 3.07
6612 7318 4.583907 TCTTTGTCTTTCATGTGGCATCAA 59.416 37.500 0.00 0.00 0.00 2.57
6613 7319 4.933505 TTGTCTTTCATGTGGCATCAAA 57.066 36.364 0.00 0.00 0.00 2.69
6614 7320 4.241590 TGTCTTTCATGTGGCATCAAAC 57.758 40.909 0.00 0.00 0.00 2.93
6615 7321 3.635836 TGTCTTTCATGTGGCATCAAACA 59.364 39.130 0.00 0.00 0.00 2.83
6616 7322 3.983344 GTCTTTCATGTGGCATCAAACAC 59.017 43.478 0.00 0.00 38.08 3.32
6617 7323 3.890756 TCTTTCATGTGGCATCAAACACT 59.109 39.130 0.00 0.00 38.39 3.55
6618 7324 3.921119 TTCATGTGGCATCAAACACTC 57.079 42.857 0.00 0.00 38.39 3.51
6619 7325 3.144657 TCATGTGGCATCAAACACTCT 57.855 42.857 0.00 0.00 38.39 3.24
6620 7326 3.489355 TCATGTGGCATCAAACACTCTT 58.511 40.909 0.00 0.00 38.39 2.85
6621 7327 3.890756 TCATGTGGCATCAAACACTCTTT 59.109 39.130 0.00 0.00 38.39 2.52
6622 7328 5.069318 TCATGTGGCATCAAACACTCTTTA 58.931 37.500 0.00 0.00 38.39 1.85
6623 7329 4.829064 TGTGGCATCAAACACTCTTTAC 57.171 40.909 0.00 0.00 38.39 2.01
6624 7330 4.460263 TGTGGCATCAAACACTCTTTACT 58.540 39.130 0.00 0.00 38.39 2.24
6625 7331 5.616270 TGTGGCATCAAACACTCTTTACTA 58.384 37.500 0.00 0.00 38.39 1.82
6626 7332 6.058833 TGTGGCATCAAACACTCTTTACTAA 58.941 36.000 0.00 0.00 38.39 2.24
6627 7333 6.714810 TGTGGCATCAAACACTCTTTACTAAT 59.285 34.615 0.00 0.00 38.39 1.73
6628 7334 7.094805 TGTGGCATCAAACACTCTTTACTAATC 60.095 37.037 0.00 0.00 38.39 1.75
6629 7335 6.374333 TGGCATCAAACACTCTTTACTAATCC 59.626 38.462 0.00 0.00 0.00 3.01
6630 7336 6.599638 GGCATCAAACACTCTTTACTAATCCT 59.400 38.462 0.00 0.00 0.00 3.24
6631 7337 7.769044 GGCATCAAACACTCTTTACTAATCCTA 59.231 37.037 0.00 0.00 0.00 2.94
6632 7338 9.331282 GCATCAAACACTCTTTACTAATCCTAT 57.669 33.333 0.00 0.00 0.00 2.57
6660 7366 8.164057 AGGAATCAAGTACTTTTCCTATTCCT 57.836 34.615 28.67 26.03 44.70 3.36
6661 7367 8.049721 AGGAATCAAGTACTTTTCCTATTCCTG 58.950 37.037 28.67 7.84 45.99 3.86
6662 7368 7.201741 GGAATCAAGTACTTTTCCTATTCCTGC 60.202 40.741 23.42 7.23 38.59 4.85
6663 7369 6.121776 TCAAGTACTTTTCCTATTCCTGCA 57.878 37.500 5.07 0.00 0.00 4.41
6664 7370 6.721318 TCAAGTACTTTTCCTATTCCTGCAT 58.279 36.000 5.07 0.00 0.00 3.96
6665 7371 7.175104 TCAAGTACTTTTCCTATTCCTGCATT 58.825 34.615 5.07 0.00 0.00 3.56
6666 7372 7.669722 TCAAGTACTTTTCCTATTCCTGCATTT 59.330 33.333 5.07 0.00 0.00 2.32
6667 7373 8.306761 CAAGTACTTTTCCTATTCCTGCATTTT 58.693 33.333 5.07 0.00 0.00 1.82
6668 7374 8.056407 AGTACTTTTCCTATTCCTGCATTTTC 57.944 34.615 0.00 0.00 0.00 2.29
6669 7375 6.916360 ACTTTTCCTATTCCTGCATTTTCA 57.084 33.333 0.00 0.00 0.00 2.69
6670 7376 6.928520 ACTTTTCCTATTCCTGCATTTTCAG 58.071 36.000 0.00 0.00 0.00 3.02
6671 7377 6.721208 ACTTTTCCTATTCCTGCATTTTCAGA 59.279 34.615 0.00 0.00 36.19 3.27
6672 7378 7.233348 ACTTTTCCTATTCCTGCATTTTCAGAA 59.767 33.333 0.00 0.00 36.19 3.02
6673 7379 7.722949 TTTCCTATTCCTGCATTTTCAGAAT 57.277 32.000 0.00 0.00 36.19 2.40
6674 7380 6.949352 TCCTATTCCTGCATTTTCAGAATC 57.051 37.500 0.00 0.00 36.19 2.52
6675 7381 6.666678 TCCTATTCCTGCATTTTCAGAATCT 58.333 36.000 0.00 0.00 36.19 2.40
6676 7382 7.121382 TCCTATTCCTGCATTTTCAGAATCTT 58.879 34.615 0.00 0.00 36.19 2.40
6677 7383 8.274322 TCCTATTCCTGCATTTTCAGAATCTTA 58.726 33.333 0.00 0.00 36.19 2.10
6678 7384 9.075678 CCTATTCCTGCATTTTCAGAATCTTAT 57.924 33.333 0.00 0.00 36.19 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 1.105457 ATGATTTCCCGTGGTGCATG 58.895 50.000 0.00 0.00 0.00 4.06
137 138 1.271934 CAAATGATTTCCCGTGGTGCA 59.728 47.619 0.00 0.00 0.00 4.57
145 146 5.070770 TGTGTACATGCAAATGATTTCCC 57.929 39.130 0.00 0.00 0.00 3.97
166 167 9.099454 CATCAATAGGATCATAGTGACATCATG 57.901 37.037 18.48 9.71 33.07 3.07
167 168 8.823794 ACATCAATAGGATCATAGTGACATCAT 58.176 33.333 18.48 1.27 33.07 2.45
172 173 8.031864 CACCTACATCAATAGGATCATAGTGAC 58.968 40.741 18.48 0.00 44.12 3.67
173 174 7.730332 ACACCTACATCAATAGGATCATAGTGA 59.270 37.037 18.42 18.42 44.12 3.41
174 175 7.901029 ACACCTACATCAATAGGATCATAGTG 58.099 38.462 8.45 8.45 44.12 2.74
175 176 9.026121 GTACACCTACATCAATAGGATCATAGT 57.974 37.037 5.84 0.00 44.12 2.12
176 177 9.025041 TGTACACCTACATCAATAGGATCATAG 57.975 37.037 5.84 0.00 44.12 2.23
177 178 8.950007 TGTACACCTACATCAATAGGATCATA 57.050 34.615 5.84 0.00 44.12 2.15
178 179 7.855784 TGTACACCTACATCAATAGGATCAT 57.144 36.000 5.84 0.00 44.12 2.45
195 196 5.394322 CGTCGAGAAACAAAATTTGTACACC 59.606 40.000 12.11 2.31 44.59 4.16
198 199 4.377738 GGCGTCGAGAAACAAAATTTGTAC 59.622 41.667 12.11 9.38 44.59 2.90
199 200 4.273969 AGGCGTCGAGAAACAAAATTTGTA 59.726 37.500 12.11 0.00 44.59 2.41
203 204 2.616842 ACAGGCGTCGAGAAACAAAATT 59.383 40.909 0.00 0.00 0.00 1.82
206 207 1.595794 GAACAGGCGTCGAGAAACAAA 59.404 47.619 0.00 0.00 0.00 2.83
207 208 1.214367 GAACAGGCGTCGAGAAACAA 58.786 50.000 0.00 0.00 0.00 2.83
208 209 0.103390 TGAACAGGCGTCGAGAAACA 59.897 50.000 0.00 0.00 0.00 2.83
209 210 0.784778 CTGAACAGGCGTCGAGAAAC 59.215 55.000 0.00 0.00 0.00 2.78
210 211 0.944311 GCTGAACAGGCGTCGAGAAA 60.944 55.000 0.00 0.00 0.00 2.52
219 350 1.391157 TTGGTTGGTGCTGAACAGGC 61.391 55.000 3.99 0.00 0.00 4.85
228 359 2.676342 CGATAAGGTAGTTGGTTGGTGC 59.324 50.000 0.00 0.00 0.00 5.01
288 419 1.070914 TGGAACGTGATGGCAAGTGTA 59.929 47.619 0.00 0.00 36.83 2.90
291 422 0.179032 TGTGGAACGTGATGGCAAGT 60.179 50.000 0.00 0.00 42.39 3.16
292 423 1.131126 GATGTGGAACGTGATGGCAAG 59.869 52.381 0.00 0.00 42.39 4.01
293 424 1.164411 GATGTGGAACGTGATGGCAA 58.836 50.000 0.00 0.00 42.39 4.52
294 425 0.036022 TGATGTGGAACGTGATGGCA 59.964 50.000 0.00 0.00 42.39 4.92
295 426 1.135689 GTTGATGTGGAACGTGATGGC 60.136 52.381 0.00 0.00 42.39 4.40
345 476 9.785982 TCGATCCATCACAAATTTATGGTATTA 57.214 29.630 15.11 0.91 40.88 0.98
346 477 8.690203 TCGATCCATCACAAATTTATGGTATT 57.310 30.769 15.11 5.27 40.88 1.89
347 478 7.094634 GCTCGATCCATCACAAATTTATGGTAT 60.095 37.037 15.11 9.36 40.88 2.73
348 479 6.204688 GCTCGATCCATCACAAATTTATGGTA 59.795 38.462 15.11 5.98 40.88 3.25
349 480 5.009010 GCTCGATCCATCACAAATTTATGGT 59.991 40.000 15.11 0.00 40.88 3.55
350 481 5.455392 GCTCGATCCATCACAAATTTATGG 58.545 41.667 10.95 10.95 41.33 2.74
351 482 5.142265 CGCTCGATCCATCACAAATTTATG 58.858 41.667 0.00 0.00 0.00 1.90
352 483 4.214119 CCGCTCGATCCATCACAAATTTAT 59.786 41.667 0.00 0.00 0.00 1.40
353 484 3.559655 CCGCTCGATCCATCACAAATTTA 59.440 43.478 0.00 0.00 0.00 1.40
355 486 1.942657 CCGCTCGATCCATCACAAATT 59.057 47.619 0.00 0.00 0.00 1.82
357 488 0.249120 ACCGCTCGATCCATCACAAA 59.751 50.000 0.00 0.00 0.00 2.83
358 489 0.460109 CACCGCTCGATCCATCACAA 60.460 55.000 0.00 0.00 0.00 3.33
381 514 1.300697 GTCGGAAGTTCACCTGCGT 60.301 57.895 5.01 0.00 0.00 5.24
383 516 1.671379 GGGTCGGAAGTTCACCTGC 60.671 63.158 11.14 0.00 0.00 4.85
393 526 0.682209 CGTTCTAGAGGGGGTCGGAA 60.682 60.000 0.00 0.00 0.00 4.30
400 533 3.162154 GGGGGCGTTCTAGAGGGG 61.162 72.222 0.00 0.00 0.00 4.79
416 549 2.866351 TCCGGTTTGTTAGAAAAGGGG 58.134 47.619 0.00 0.00 0.00 4.79
417 550 3.254903 CCTTCCGGTTTGTTAGAAAAGGG 59.745 47.826 0.00 0.00 0.00 3.95
418 551 3.887110 ACCTTCCGGTTTGTTAGAAAAGG 59.113 43.478 0.00 5.47 42.13 3.11
419 552 4.261447 CCACCTTCCGGTTTGTTAGAAAAG 60.261 45.833 0.00 0.00 42.13 2.27
483 664 1.896220 TGAATCTGTGGGTCTGTTGC 58.104 50.000 0.00 0.00 0.00 4.17
510 691 1.476652 GCATTGGCAAAACCTTGGGTT 60.477 47.619 3.01 0.00 43.59 4.11
629 812 4.378666 CGCCCCGGTTTTATATATTTTCCG 60.379 45.833 0.00 1.45 36.85 4.30
652 835 4.717313 GGCGTTGGTGTCCCCCTC 62.717 72.222 0.00 0.00 0.00 4.30
659 851 1.679305 TTGGTGTTGGCGTTGGTGT 60.679 52.632 0.00 0.00 0.00 4.16
660 852 1.226831 GTTGGTGTTGGCGTTGGTG 60.227 57.895 0.00 0.00 0.00 4.17
667 859 4.025401 CTCGGCGTTGGTGTTGGC 62.025 66.667 6.85 0.00 0.00 4.52
722 914 1.515521 AAAAACCCTTGGCTCGCTCG 61.516 55.000 0.00 0.00 0.00 5.03
892 1258 0.105709 CAAACCAAACCCCCTCACCT 60.106 55.000 0.00 0.00 0.00 4.00
1038 1404 2.366167 AGCTTCATCCGCTCCCCT 60.366 61.111 0.00 0.00 30.49 4.79
1533 1908 2.285180 CCTCCCCCTCCTCCAGAG 59.715 72.222 0.00 0.00 42.83 3.35
1784 2168 2.046023 TTGCTGCCTCCGGATGTG 60.046 61.111 3.57 0.82 0.00 3.21
1785 2169 2.270205 CTTGCTGCCTCCGGATGT 59.730 61.111 3.57 0.00 0.00 3.06
1786 2170 1.971505 TACCTTGCTGCCTCCGGATG 61.972 60.000 3.57 2.55 0.00 3.51
1787 2171 1.689233 TACCTTGCTGCCTCCGGAT 60.689 57.895 3.57 0.00 0.00 4.18
1788 2172 2.284331 TACCTTGCTGCCTCCGGA 60.284 61.111 2.93 2.93 0.00 5.14
1789 2173 2.125106 GTACCTTGCTGCCTCCGG 60.125 66.667 0.00 0.00 0.00 5.14
1953 2337 1.114627 TCATGACTGGATCGGAGTGG 58.885 55.000 0.00 0.00 0.00 4.00
2239 2623 2.154798 AATTGCTGCTGCTGGTGCTG 62.155 55.000 17.00 0.00 40.48 4.41
2240 2624 1.906824 AATTGCTGCTGCTGGTGCT 60.907 52.632 17.00 0.00 40.48 4.40
2241 2625 1.736645 CAATTGCTGCTGCTGGTGC 60.737 57.895 17.00 4.87 40.48 5.01
2411 2807 7.639113 TTATTGGGATTAGTTTGCCTTACTG 57.361 36.000 0.00 0.00 0.00 2.74
2415 2811 5.301805 CGGATTATTGGGATTAGTTTGCCTT 59.698 40.000 0.00 0.00 0.00 4.35
2583 2979 2.666812 CGGGGCTCGTTAGGGTTT 59.333 61.111 0.00 0.00 0.00 3.27
2589 2985 2.205152 GGGATAGCGGGGCTCGTTA 61.205 63.158 9.26 7.37 40.44 3.18
2625 3021 4.599041 CATTCTGGGGTAAACCATTCTCA 58.401 43.478 0.81 0.00 42.91 3.27
2652 3048 4.387256 GTGTTGCTCTGAGAGTATTGTGAC 59.613 45.833 11.64 2.01 31.39 3.67
2709 3105 1.851304 TTGATTCAGTTGGATGGGCC 58.149 50.000 0.00 0.00 37.10 5.80
2844 3240 1.105457 CACCCACATGCCCAATAGTG 58.895 55.000 0.00 0.00 0.00 2.74
2847 3243 0.969917 GCACACCCACATGCCCAATA 60.970 55.000 0.00 0.00 35.73 1.90
2923 3319 2.831333 CATAACATCCTTCTGCTCGCT 58.169 47.619 0.00 0.00 0.00 4.93
3075 3471 2.653726 ACATTGCTGAACTGTTGACCA 58.346 42.857 0.00 0.00 0.00 4.02
3204 3600 3.035173 TTGCTCCTCAGCCGGGATG 62.035 63.158 5.79 5.79 46.26 3.51
3573 3971 1.009829 GCTAACCTGCACATTCCTCG 58.990 55.000 0.00 0.00 0.00 4.63
3577 3975 1.474077 CCCTTGCTAACCTGCACATTC 59.526 52.381 0.00 0.00 43.20 2.67
3802 4219 1.213926 ACATCAGAGCCCCTCCATTTC 59.786 52.381 0.00 0.00 0.00 2.17
4293 4710 7.360691 CCTGCACATGAAGAGAATATTAATCGG 60.361 40.741 0.00 0.00 0.00 4.18
4309 4726 1.276859 ATCCAGGCTCCTGCACATGA 61.277 55.000 10.37 2.73 42.35 3.07
4479 4896 7.148239 GCCAGCAGTAGTACAAAACAGAATAAT 60.148 37.037 2.52 0.00 0.00 1.28
4498 4915 0.318445 GAAGTGCAACAAGCCAGCAG 60.318 55.000 0.00 0.00 44.83 4.24
4542 4959 9.961265 ATCAAACATGCAAAATATGATACAGAG 57.039 29.630 0.00 0.00 0.00 3.35
4559 4976 8.455903 AGACAGATTACCCAATATCAAACATG 57.544 34.615 0.00 0.00 0.00 3.21
4635 5053 4.408921 TGTGTATTCCAAGTATGAGGGGAG 59.591 45.833 0.00 0.00 0.00 4.30
4655 5073 2.967459 TATCACAACAAAGCGCTGTG 57.033 45.000 26.10 26.10 41.47 3.66
4660 5078 6.852853 GTCCATATGATTATCACAACAAAGCG 59.147 38.462 3.65 0.00 0.00 4.68
4706 5146 6.701145 TTGTGTCTATTTTAAGGTGCAACA 57.299 33.333 3.64 0.00 39.98 3.33
4776 5226 0.246635 CCTTCCAGTGTCGACGGAAT 59.753 55.000 19.57 0.00 35.56 3.01
4840 5292 7.816995 TGGCAAACAAATGATTCTTTGGTATAC 59.183 33.333 9.17 0.00 39.83 1.47
4846 5454 6.647481 TCAGATGGCAAACAAATGATTCTTTG 59.353 34.615 0.00 4.67 41.02 2.77
4856 5464 6.998968 AACAAAATTCAGATGGCAAACAAA 57.001 29.167 0.00 0.00 0.00 2.83
4959 5571 2.617250 TTTCATTCGCATGTGACAGC 57.383 45.000 8.86 0.00 0.00 4.40
5000 5624 1.079405 GCCGGTCGATCCAGTTTGA 60.079 57.895 1.90 0.00 35.57 2.69
5017 5641 1.455030 TGCAAAATTGTTCGCATTCGC 59.545 42.857 0.00 0.00 35.26 4.70
5019 5643 5.520022 AAGATGCAAAATTGTTCGCATTC 57.480 34.783 0.00 0.00 44.77 2.67
5449 6103 6.403636 CCATCCACTGCACAAGTAATTTCTAC 60.404 42.308 0.00 0.00 36.83 2.59
5495 6149 3.357203 TGCCACCTGACAGTTAAAACAA 58.643 40.909 0.93 0.00 0.00 2.83
5498 6152 3.957497 ACAATGCCACCTGACAGTTAAAA 59.043 39.130 0.93 0.00 0.00 1.52
5563 6218 1.142748 CATCAGCGACCTCCACTCC 59.857 63.158 0.00 0.00 0.00 3.85
5693 6348 2.808543 CCCAGAAGTTTTCTCAAGACCG 59.191 50.000 0.00 0.00 38.11 4.79
5726 6381 5.786938 AAGGAGAACTTGTCCAAGACGGAT 61.787 45.833 13.69 0.00 37.90 4.18
5727 6382 1.343465 GGAGAACTTGTCCAAGACGGA 59.657 52.381 13.69 0.00 43.61 4.69
5728 6383 1.344763 AGGAGAACTTGTCCAAGACGG 59.655 52.381 13.69 0.00 40.79 4.79
5729 6384 2.821991 AGGAGAACTTGTCCAAGACG 57.178 50.000 13.69 0.00 40.79 4.18
5841 6501 8.952278 GTATGAACAGATAGATAGACACCCTAG 58.048 40.741 0.00 0.00 0.00 3.02
5843 6503 6.722129 GGTATGAACAGATAGATAGACACCCT 59.278 42.308 0.00 0.00 0.00 4.34
5844 6504 6.071278 GGGTATGAACAGATAGATAGACACCC 60.071 46.154 0.00 0.00 33.18 4.61
5845 6505 6.071278 GGGGTATGAACAGATAGATAGACACC 60.071 46.154 0.00 0.00 0.00 4.16
5846 6506 6.722129 AGGGGTATGAACAGATAGATAGACAC 59.278 42.308 0.00 0.00 0.00 3.67
5847 6507 6.864421 AGGGGTATGAACAGATAGATAGACA 58.136 40.000 0.00 0.00 0.00 3.41
5885 6547 8.000709 AGGGCTCATGATTTTATGATTACAAGA 58.999 33.333 0.00 0.00 36.55 3.02
5920 6582 0.971447 ACTTCTAGACACGGGGAGGC 60.971 60.000 0.00 0.00 0.00 4.70
6018 6680 9.250624 CTATAACTGACAATAAGACTGGCTTAC 57.749 37.037 4.83 0.00 41.64 2.34
6180 6854 3.428413 ACTTGTATTACCACCACCCAC 57.572 47.619 0.00 0.00 0.00 4.61
6246 6921 4.799678 ACATCACAAACACACGAAAAACA 58.200 34.783 0.00 0.00 0.00 2.83
6290 6965 4.513406 ACAACTGGACCCTTTTTACAGA 57.487 40.909 0.00 0.00 33.57 3.41
6377 7083 2.124529 GCCCCAAGTAGAGCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
6379 7085 0.980231 AGGAGCCCCAAGTAGAGCAG 60.980 60.000 0.00 0.00 33.88 4.24
6382 7088 1.909302 TCAAAGGAGCCCCAAGTAGAG 59.091 52.381 0.00 0.00 33.88 2.43
6384 7090 3.282885 GAATCAAAGGAGCCCCAAGTAG 58.717 50.000 0.00 0.00 33.88 2.57
6422 7128 5.506708 TCCAAGGAGCCCTAAGAAAAATAC 58.493 41.667 0.00 0.00 31.13 1.89
6434 7140 0.322906 CAAGGACTTCCAAGGAGCCC 60.323 60.000 0.00 0.00 38.89 5.19
6435 7141 0.322906 CCAAGGACTTCCAAGGAGCC 60.323 60.000 0.00 0.00 38.89 4.70
6436 7142 0.322906 CCCAAGGACTTCCAAGGAGC 60.323 60.000 7.41 0.00 38.89 4.70
6437 7143 1.362224 TCCCAAGGACTTCCAAGGAG 58.638 55.000 7.41 0.03 38.89 3.69
6438 7144 1.827792 TTCCCAAGGACTTCCAAGGA 58.172 50.000 7.41 2.94 38.89 3.36
6439 7145 2.907458 ATTCCCAAGGACTTCCAAGG 57.093 50.000 0.00 0.00 38.89 3.61
6440 7146 5.305386 AGAAAAATTCCCAAGGACTTCCAAG 59.695 40.000 0.00 0.00 38.89 3.61
6441 7147 5.215845 AGAAAAATTCCCAAGGACTTCCAA 58.784 37.500 0.00 0.00 38.89 3.53
6442 7148 4.814967 AGAAAAATTCCCAAGGACTTCCA 58.185 39.130 0.00 0.00 38.89 3.53
6443 7149 5.808366 AAGAAAAATTCCCAAGGACTTCC 57.192 39.130 0.00 0.00 0.00 3.46
6444 7150 7.896811 ACATAAGAAAAATTCCCAAGGACTTC 58.103 34.615 0.00 0.00 0.00 3.01
6445 7151 7.309194 CGACATAAGAAAAATTCCCAAGGACTT 60.309 37.037 0.00 0.00 0.00 3.01
6446 7152 6.151144 CGACATAAGAAAAATTCCCAAGGACT 59.849 38.462 0.00 0.00 0.00 3.85
6447 7153 6.072119 ACGACATAAGAAAAATTCCCAAGGAC 60.072 38.462 0.00 0.00 0.00 3.85
6448 7154 6.007703 ACGACATAAGAAAAATTCCCAAGGA 58.992 36.000 0.00 0.00 0.00 3.36
6449 7155 6.267496 ACGACATAAGAAAAATTCCCAAGG 57.733 37.500 0.00 0.00 0.00 3.61
6450 7156 6.322491 GGACGACATAAGAAAAATTCCCAAG 58.678 40.000 0.00 0.00 0.00 3.61
6451 7157 5.184287 GGGACGACATAAGAAAAATTCCCAA 59.816 40.000 0.00 0.00 40.09 4.12
6452 7158 4.703093 GGGACGACATAAGAAAAATTCCCA 59.297 41.667 0.00 0.00 40.09 4.37
6453 7159 4.948004 AGGGACGACATAAGAAAAATTCCC 59.052 41.667 0.00 0.00 40.57 3.97
6454 7160 6.322491 CAAGGGACGACATAAGAAAAATTCC 58.678 40.000 0.00 0.00 0.00 3.01
6455 7161 6.322491 CCAAGGGACGACATAAGAAAAATTC 58.678 40.000 0.00 0.00 0.00 2.17
6456 7162 5.185056 CCCAAGGGACGACATAAGAAAAATT 59.815 40.000 0.00 0.00 37.50 1.82
6457 7163 4.705023 CCCAAGGGACGACATAAGAAAAAT 59.295 41.667 0.00 0.00 37.50 1.82
6458 7164 4.076394 CCCAAGGGACGACATAAGAAAAA 58.924 43.478 0.00 0.00 37.50 1.94
6459 7165 3.073356 ACCCAAGGGACGACATAAGAAAA 59.927 43.478 13.15 0.00 38.96 2.29
6460 7166 2.640826 ACCCAAGGGACGACATAAGAAA 59.359 45.455 13.15 0.00 38.96 2.52
6461 7167 2.262637 ACCCAAGGGACGACATAAGAA 58.737 47.619 13.15 0.00 38.96 2.52
6462 7168 1.946984 ACCCAAGGGACGACATAAGA 58.053 50.000 13.15 0.00 38.96 2.10
6463 7169 2.629051 GAACCCAAGGGACGACATAAG 58.371 52.381 13.15 0.00 38.96 1.73
6464 7170 1.066716 CGAACCCAAGGGACGACATAA 60.067 52.381 13.15 0.00 39.32 1.90
6465 7171 0.533491 CGAACCCAAGGGACGACATA 59.467 55.000 13.15 0.00 39.32 2.29
6466 7172 1.295423 CGAACCCAAGGGACGACAT 59.705 57.895 13.15 0.00 39.32 3.06
6467 7173 0.827089 TACGAACCCAAGGGACGACA 60.827 55.000 25.71 15.18 39.81 4.35
6468 7174 0.318120 TTACGAACCCAAGGGACGAC 59.682 55.000 25.71 9.70 39.81 4.34
6469 7175 1.269012 ATTACGAACCCAAGGGACGA 58.731 50.000 25.71 12.18 39.81 4.20
6470 7176 2.482490 CCTATTACGAACCCAAGGGACG 60.482 54.545 13.15 17.91 41.18 4.79
6471 7177 2.767960 TCCTATTACGAACCCAAGGGAC 59.232 50.000 13.15 4.68 38.96 4.46
6472 7178 3.119009 TCCTATTACGAACCCAAGGGA 57.881 47.619 13.15 0.00 38.96 4.20
6473 7179 4.134563 CAATCCTATTACGAACCCAAGGG 58.865 47.826 2.91 2.91 42.03 3.95
6474 7180 5.031066 TCAATCCTATTACGAACCCAAGG 57.969 43.478 0.00 0.00 0.00 3.61
6475 7181 7.255139 GGAATTCAATCCTATTACGAACCCAAG 60.255 40.741 7.93 0.00 36.50 3.61
6476 7182 6.544564 GGAATTCAATCCTATTACGAACCCAA 59.455 38.462 7.93 0.00 36.50 4.12
6477 7183 6.059484 GGAATTCAATCCTATTACGAACCCA 58.941 40.000 7.93 0.00 36.50 4.51
6478 7184 6.059484 TGGAATTCAATCCTATTACGAACCC 58.941 40.000 7.93 0.00 40.35 4.11
6479 7185 7.745620 ATGGAATTCAATCCTATTACGAACC 57.254 36.000 7.93 0.00 40.35 3.62
6480 7186 8.936864 CCTATGGAATTCAATCCTATTACGAAC 58.063 37.037 7.93 0.00 40.35 3.95
6481 7187 8.100791 CCCTATGGAATTCAATCCTATTACGAA 58.899 37.037 7.93 0.00 40.35 3.85
6482 7188 7.311046 CCCCTATGGAATTCAATCCTATTACGA 60.311 40.741 7.93 0.00 40.35 3.43
6483 7189 6.823689 CCCCTATGGAATTCAATCCTATTACG 59.176 42.308 7.93 0.00 40.35 3.18
6484 7190 7.699878 ACCCCTATGGAATTCAATCCTATTAC 58.300 38.462 7.93 0.00 40.35 1.89
6485 7191 7.905144 ACCCCTATGGAATTCAATCCTATTA 57.095 36.000 7.93 0.00 40.35 0.98
6486 7192 6.803587 ACCCCTATGGAATTCAATCCTATT 57.196 37.500 7.93 0.00 40.35 1.73
6487 7193 6.803587 AACCCCTATGGAATTCAATCCTAT 57.196 37.500 7.93 0.00 40.35 2.57
6488 7194 6.606241 AAACCCCTATGGAATTCAATCCTA 57.394 37.500 7.93 0.00 40.35 2.94
6489 7195 5.487861 AAACCCCTATGGAATTCAATCCT 57.512 39.130 7.93 0.00 40.35 3.24
6490 7196 6.156083 TGAAAAACCCCTATGGAATTCAATCC 59.844 38.462 7.93 0.00 40.10 3.01
6491 7197 7.181569 TGAAAAACCCCTATGGAATTCAATC 57.818 36.000 7.93 0.00 38.00 2.67
6492 7198 7.754091 ATGAAAAACCCCTATGGAATTCAAT 57.246 32.000 7.93 3.89 37.19 2.57
6493 7199 8.703743 CATATGAAAAACCCCTATGGAATTCAA 58.296 33.333 7.93 0.00 37.19 2.69
6494 7200 8.064389 TCATATGAAAAACCCCTATGGAATTCA 58.936 33.333 7.93 0.00 37.64 2.57
6495 7201 8.477419 TCATATGAAAAACCCCTATGGAATTC 57.523 34.615 1.98 0.00 38.00 2.17
6496 7202 8.852671 TTCATATGAAAAACCCCTATGGAATT 57.147 30.769 15.82 0.00 38.00 2.17
6497 7203 8.852671 TTTCATATGAAAAACCCCTATGGAAT 57.147 30.769 25.11 0.00 40.68 3.01
6498 7204 8.852671 ATTTCATATGAAAAACCCCTATGGAA 57.147 30.769 29.42 7.01 45.81 3.53
6544 7250 6.938030 AGTGGATGTTTACATTTCCTACGAAA 59.062 34.615 0.00 0.00 42.10 3.46
6545 7251 6.469410 AGTGGATGTTTACATTTCCTACGAA 58.531 36.000 0.00 0.00 36.57 3.85
6546 7252 6.045072 AGTGGATGTTTACATTTCCTACGA 57.955 37.500 0.00 0.00 36.57 3.43
6547 7253 6.106673 AGAGTGGATGTTTACATTTCCTACG 58.893 40.000 0.00 0.00 36.57 3.51
6548 7254 8.880750 GTTAGAGTGGATGTTTACATTTCCTAC 58.119 37.037 0.00 0.00 36.57 3.18
6549 7255 8.044908 GGTTAGAGTGGATGTTTACATTTCCTA 58.955 37.037 0.00 0.00 36.57 2.94
6550 7256 6.884836 GGTTAGAGTGGATGTTTACATTTCCT 59.115 38.462 0.00 0.00 36.57 3.36
6551 7257 6.884836 AGGTTAGAGTGGATGTTTACATTTCC 59.115 38.462 0.00 0.00 36.57 3.13
6552 7258 7.923414 AGGTTAGAGTGGATGTTTACATTTC 57.077 36.000 0.00 0.00 36.57 2.17
6553 7259 8.164070 AGAAGGTTAGAGTGGATGTTTACATTT 58.836 33.333 0.00 0.00 36.57 2.32
6554 7260 7.690256 AGAAGGTTAGAGTGGATGTTTACATT 58.310 34.615 0.00 0.00 36.57 2.71
6555 7261 7.259088 AGAAGGTTAGAGTGGATGTTTACAT 57.741 36.000 0.00 0.00 39.70 2.29
6556 7262 6.681729 AGAAGGTTAGAGTGGATGTTTACA 57.318 37.500 0.00 0.00 0.00 2.41
6559 7265 9.268282 TCTAATAGAAGGTTAGAGTGGATGTTT 57.732 33.333 0.00 0.00 34.24 2.83
6560 7266 8.840200 TCTAATAGAAGGTTAGAGTGGATGTT 57.160 34.615 0.00 0.00 34.24 2.71
6561 7267 8.472007 CTCTAATAGAAGGTTAGAGTGGATGT 57.528 38.462 12.48 0.00 45.07 3.06
6580 7286 8.571336 CCACATGAAAGACAAAGAAACTCTAAT 58.429 33.333 0.00 0.00 0.00 1.73
6581 7287 7.468631 GCCACATGAAAGACAAAGAAACTCTAA 60.469 37.037 0.00 0.00 0.00 2.10
6582 7288 6.017109 GCCACATGAAAGACAAAGAAACTCTA 60.017 38.462 0.00 0.00 0.00 2.43
6583 7289 5.221126 GCCACATGAAAGACAAAGAAACTCT 60.221 40.000 0.00 0.00 0.00 3.24
6584 7290 4.978580 GCCACATGAAAGACAAAGAAACTC 59.021 41.667 0.00 0.00 0.00 3.01
6585 7291 4.402155 TGCCACATGAAAGACAAAGAAACT 59.598 37.500 0.00 0.00 0.00 2.66
6586 7292 4.681744 TGCCACATGAAAGACAAAGAAAC 58.318 39.130 0.00 0.00 0.00 2.78
6587 7293 4.998671 TGCCACATGAAAGACAAAGAAA 57.001 36.364 0.00 0.00 0.00 2.52
6588 7294 4.583907 TGATGCCACATGAAAGACAAAGAA 59.416 37.500 0.00 0.00 0.00 2.52
6589 7295 4.143543 TGATGCCACATGAAAGACAAAGA 58.856 39.130 0.00 0.00 0.00 2.52
6590 7296 4.508461 TGATGCCACATGAAAGACAAAG 57.492 40.909 0.00 0.00 0.00 2.77
6591 7297 4.933505 TTGATGCCACATGAAAGACAAA 57.066 36.364 0.00 0.00 0.00 2.83
6592 7298 4.099113 TGTTTGATGCCACATGAAAGACAA 59.901 37.500 0.00 0.00 0.00 3.18
6593 7299 3.635836 TGTTTGATGCCACATGAAAGACA 59.364 39.130 0.00 0.00 0.00 3.41
6594 7300 3.983344 GTGTTTGATGCCACATGAAAGAC 59.017 43.478 0.00 4.57 0.00 3.01
6595 7301 3.890756 AGTGTTTGATGCCACATGAAAGA 59.109 39.130 0.00 0.00 33.99 2.52
6596 7302 4.022589 AGAGTGTTTGATGCCACATGAAAG 60.023 41.667 0.00 0.00 33.99 2.62
6597 7303 3.890756 AGAGTGTTTGATGCCACATGAAA 59.109 39.130 0.00 0.00 33.99 2.69
6598 7304 3.489355 AGAGTGTTTGATGCCACATGAA 58.511 40.909 0.00 0.00 33.99 2.57
6599 7305 3.144657 AGAGTGTTTGATGCCACATGA 57.855 42.857 0.00 0.00 33.99 3.07
6600 7306 3.928727 AAGAGTGTTTGATGCCACATG 57.071 42.857 0.00 0.00 33.99 3.21
6601 7307 5.072741 AGTAAAGAGTGTTTGATGCCACAT 58.927 37.500 0.00 0.00 33.99 3.21
6602 7308 4.460263 AGTAAAGAGTGTTTGATGCCACA 58.540 39.130 0.00 0.00 33.99 4.17
6603 7309 6.554334 TTAGTAAAGAGTGTTTGATGCCAC 57.446 37.500 0.00 0.00 0.00 5.01
6604 7310 6.374333 GGATTAGTAAAGAGTGTTTGATGCCA 59.626 38.462 0.00 0.00 0.00 4.92
6605 7311 6.599638 AGGATTAGTAAAGAGTGTTTGATGCC 59.400 38.462 0.00 0.00 0.00 4.40
6606 7312 7.617041 AGGATTAGTAAAGAGTGTTTGATGC 57.383 36.000 0.00 0.00 0.00 3.91
6636 7342 7.201741 GCAGGAATAGGAAAAGTACTTGATTCC 60.202 40.741 23.32 23.32 40.84 3.01
6637 7343 7.336931 TGCAGGAATAGGAAAAGTACTTGATTC 59.663 37.037 9.34 9.98 0.00 2.52
6638 7344 7.175104 TGCAGGAATAGGAAAAGTACTTGATT 58.825 34.615 9.34 0.00 0.00 2.57
6639 7345 6.721318 TGCAGGAATAGGAAAAGTACTTGAT 58.279 36.000 9.34 0.95 0.00 2.57
6640 7346 6.121776 TGCAGGAATAGGAAAAGTACTTGA 57.878 37.500 9.34 0.00 0.00 3.02
6641 7347 7.396540 AATGCAGGAATAGGAAAAGTACTTG 57.603 36.000 9.34 0.00 0.00 3.16
6642 7348 8.422577 AAAATGCAGGAATAGGAAAAGTACTT 57.577 30.769 1.12 1.12 0.00 2.24
6643 7349 7.669722 TGAAAATGCAGGAATAGGAAAAGTACT 59.330 33.333 0.00 0.00 0.00 2.73
6644 7350 7.826690 TGAAAATGCAGGAATAGGAAAAGTAC 58.173 34.615 0.00 0.00 0.00 2.73
6645 7351 7.888021 TCTGAAAATGCAGGAATAGGAAAAGTA 59.112 33.333 0.00 0.00 36.55 2.24
6646 7352 6.721208 TCTGAAAATGCAGGAATAGGAAAAGT 59.279 34.615 0.00 0.00 36.55 2.66
6647 7353 7.161773 TCTGAAAATGCAGGAATAGGAAAAG 57.838 36.000 0.00 0.00 36.55 2.27
6648 7354 7.537596 TTCTGAAAATGCAGGAATAGGAAAA 57.462 32.000 0.00 0.00 36.55 2.29
6649 7355 7.616935 AGATTCTGAAAATGCAGGAATAGGAAA 59.383 33.333 0.00 0.00 36.55 3.13
6650 7356 7.121382 AGATTCTGAAAATGCAGGAATAGGAA 58.879 34.615 0.00 0.00 36.55 3.36
6651 7357 6.666678 AGATTCTGAAAATGCAGGAATAGGA 58.333 36.000 0.00 0.00 36.55 2.94
6652 7358 6.956202 AGATTCTGAAAATGCAGGAATAGG 57.044 37.500 0.00 0.00 36.55 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.