Multiple sequence alignment - TraesCS7B01G422900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G422900 chr7B 100.000 2973 0 0 1 2973 692293258 692290286 0.000000e+00 5491.0
1 TraesCS7B01G422900 chr7B 87.983 466 53 1 981 1443 692291795 692291330 5.600000e-152 547.0
2 TraesCS7B01G422900 chr7B 87.983 466 53 1 1464 1929 692292278 692291816 5.600000e-152 547.0
3 TraesCS7B01G422900 chr7B 84.632 475 68 3 1464 1937 451486445 451485975 4.490000e-128 468.0
4 TraesCS7B01G422900 chr7B 86.378 323 37 5 3 324 176220780 176220464 2.190000e-91 346.0
5 TraesCS7B01G422900 chr7D 89.216 2652 182 43 369 2973 607204415 607207009 0.000000e+00 3217.0
6 TraesCS7B01G422900 chr7D 86.606 545 67 5 927 1470 434231920 434231381 5.480000e-167 597.0
7 TraesCS7B01G422900 chr7D 85.051 495 56 8 983 1468 607205530 607206015 3.440000e-134 488.0
8 TraesCS7B01G422900 chr7D 86.175 434 55 3 1497 1929 607205078 607205507 5.800000e-127 464.0
9 TraesCS7B01G422900 chr7A 87.859 766 75 11 1464 2218 699249786 699249028 0.000000e+00 883.0
10 TraesCS7B01G422900 chr7A 91.051 514 40 3 961 1468 699249806 699249293 0.000000e+00 689.0
11 TraesCS7B01G422900 chr7A 80.449 312 32 16 2634 2920 96392860 96392553 8.350000e-51 211.0
12 TraesCS7B01G422900 chr7A 96.875 32 1 0 887 918 699249837 699249806 1.000000e-03 54.7
13 TraesCS7B01G422900 chr6B 83.947 760 98 15 714 1451 159706534 159705777 0.000000e+00 706.0
14 TraesCS7B01G422900 chr6B 84.755 551 69 7 1465 2014 159706246 159705710 3.370000e-149 538.0
15 TraesCS7B01G422900 chr6D 85.094 530 66 8 927 1443 84088357 84087828 2.030000e-146 529.0
16 TraesCS7B01G422900 chr6D 84.381 557 66 10 1465 2014 84088295 84087753 7.300000e-146 527.0
17 TraesCS7B01G422900 chr6D 84.071 113 9 7 454 563 14233877 14233771 1.890000e-17 100.0
18 TraesCS7B01G422900 chr6D 95.000 40 1 1 2283 2321 445821441 445821402 8.900000e-06 62.1
19 TraesCS7B01G422900 chr6A 82.014 556 81 10 1465 2014 101363231 101362689 3.490000e-124 455.0
20 TraesCS7B01G422900 chr6A 81.170 547 87 8 1465 2005 101319354 101318818 2.740000e-115 425.0
21 TraesCS7B01G422900 chr6A 92.727 110 8 0 755 864 101363532 101363423 3.070000e-35 159.0
22 TraesCS7B01G422900 chr5B 86.420 324 32 10 3 323 635098319 635098633 7.890000e-91 344.0
23 TraesCS7B01G422900 chr5B 85.449 323 41 4 3 324 692448872 692449189 6.140000e-87 331.0
24 TraesCS7B01G422900 chr5B 78.594 313 44 13 2645 2937 445460423 445460114 5.060000e-43 185.0
25 TraesCS7B01G422900 chr5D 85.802 324 38 8 3 322 413676371 413676690 1.320000e-88 337.0
26 TraesCS7B01G422900 chr5D 79.392 296 40 10 2634 2912 373839666 373839375 3.910000e-44 189.0
27 TraesCS7B01G422900 chr3D 85.802 324 38 8 3 322 603318839 603319158 1.320000e-88 337.0
28 TraesCS7B01G422900 chr3D 85.538 325 39 8 3 323 522951510 522951830 1.710000e-87 333.0
29 TraesCS7B01G422900 chr3B 85.849 318 39 6 3 318 168701223 168701536 1.710000e-87 333.0
30 TraesCS7B01G422900 chr3B 100.000 36 0 0 2283 2318 79527543 79527508 1.910000e-07 67.6
31 TraesCS7B01G422900 chr3B 100.000 32 0 0 2287 2318 225296687 225296656 3.200000e-05 60.2
32 TraesCS7B01G422900 chr2D 85.538 325 39 8 3 323 102292111 102292431 1.710000e-87 333.0
33 TraesCS7B01G422900 chr2D 85.714 112 9 3 455 563 561882637 561882530 8.710000e-21 111.0
34 TraesCS7B01G422900 chr1B 85.185 324 40 8 3 323 47511712 47512030 2.860000e-85 326.0
35 TraesCS7B01G422900 chr1B 81.908 304 33 14 2635 2920 424998344 424998045 1.380000e-58 237.0
36 TraesCS7B01G422900 chr5A 80.592 304 38 11 2635 2920 449961549 449961249 6.450000e-52 215.0
37 TraesCS7B01G422900 chr4A 82.353 153 21 4 422 572 738387038 738386890 8.650000e-26 128.0
38 TraesCS7B01G422900 chr4A 100.000 36 0 0 2283 2318 570999276 570999311 1.910000e-07 67.6
39 TraesCS7B01G422900 chr1D 86.408 103 8 3 466 566 8256428 8256330 1.130000e-19 108.0
40 TraesCS7B01G422900 chr4D 97.222 36 1 0 2283 2318 59637377 59637342 8.900000e-06 62.1
41 TraesCS7B01G422900 chr2B 97.222 36 1 0 2283 2318 742076608 742076643 8.900000e-06 62.1
42 TraesCS7B01G422900 chr1A 97.222 36 1 0 2283 2318 488062969 488063004 8.900000e-06 62.1
43 TraesCS7B01G422900 chr3A 97.059 34 1 0 2626 2659 11469369 11469336 1.150000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G422900 chr7B 692290286 692293258 2972 True 2195.000000 5491 91.988667 1 2973 3 chr7B.!!$R3 2972
1 TraesCS7B01G422900 chr7D 607204415 607207009 2594 False 1389.666667 3217 86.814000 369 2973 3 chr7D.!!$F1 2604
2 TraesCS7B01G422900 chr7D 434231381 434231920 539 True 597.000000 597 86.606000 927 1470 1 chr7D.!!$R1 543
3 TraesCS7B01G422900 chr7A 699249028 699249837 809 True 542.233333 883 91.928333 887 2218 3 chr7A.!!$R2 1331
4 TraesCS7B01G422900 chr6B 159705710 159706534 824 True 622.000000 706 84.351000 714 2014 2 chr6B.!!$R1 1300
5 TraesCS7B01G422900 chr6D 84087753 84088357 604 True 528.000000 529 84.737500 927 2014 2 chr6D.!!$R3 1087
6 TraesCS7B01G422900 chr6A 101318818 101319354 536 True 425.000000 425 81.170000 1465 2005 1 chr6A.!!$R1 540
7 TraesCS7B01G422900 chr6A 101362689 101363532 843 True 307.000000 455 87.370500 755 2014 2 chr6A.!!$R2 1259

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 220 0.035725 TCTCTCTTACCGTCGGAGCA 60.036 55.0 20.51 0.0 0.00 4.26 F
272 273 0.103208 CGGTGGAGATCGGAGGAAAG 59.897 60.0 0.00 0.0 0.00 2.62 F
1323 1431 0.179084 ACAAGGCGTACCGGATCATG 60.179 55.0 9.46 0.0 42.76 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1328 1436 0.532862 CACGAGCCGCCTCCAATTAT 60.533 55.0 0.0 0.0 34.49 1.28 R
1802 1911 0.541392 CCACCGAGACCCAATGATCA 59.459 55.0 0.0 0.0 0.00 2.92 R
2178 2302 0.605589 ACCGAAGCAGCCAACTAACC 60.606 55.0 0.0 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.592485 ATCCTAACACTGCCGATCTAAG 57.408 45.455 0.00 0.00 0.00 2.18
22 23 2.693591 TCCTAACACTGCCGATCTAAGG 59.306 50.000 0.00 0.00 0.00 2.69
23 24 2.224066 CCTAACACTGCCGATCTAAGGG 60.224 54.545 0.00 0.00 0.00 3.95
24 25 1.568504 AACACTGCCGATCTAAGGGA 58.431 50.000 0.00 0.00 0.00 4.20
25 26 1.794714 ACACTGCCGATCTAAGGGAT 58.205 50.000 0.00 0.00 37.37 3.85
26 27 1.689273 ACACTGCCGATCTAAGGGATC 59.311 52.381 0.00 0.00 45.37 3.36
48 49 6.655078 TCGATAGAGACATGATTCCATCAA 57.345 37.500 0.00 0.00 41.36 2.57
49 50 6.450545 TCGATAGAGACATGATTCCATCAAC 58.549 40.000 0.00 0.00 41.36 3.18
50 51 6.266330 TCGATAGAGACATGATTCCATCAACT 59.734 38.462 0.00 0.00 41.36 3.16
51 52 6.585702 CGATAGAGACATGATTCCATCAACTC 59.414 42.308 0.00 0.00 40.33 3.01
52 53 5.954153 AGAGACATGATTCCATCAACTCT 57.046 39.130 0.00 11.93 43.50 3.24
53 54 5.672503 AGAGACATGATTCCATCAACTCTG 58.327 41.667 0.00 3.46 43.50 3.35
54 55 5.424573 AGAGACATGATTCCATCAACTCTGA 59.575 40.000 0.00 0.00 43.50 3.27
55 56 5.672503 AGACATGATTCCATCAACTCTGAG 58.327 41.667 0.00 2.45 43.50 3.35
56 57 5.424573 AGACATGATTCCATCAACTCTGAGA 59.575 40.000 12.44 0.00 43.50 3.27
57 58 6.058553 ACATGATTCCATCAACTCTGAGAA 57.941 37.500 12.44 0.00 43.50 2.87
58 59 6.114089 ACATGATTCCATCAACTCTGAGAAG 58.886 40.000 12.44 3.29 43.50 2.85
59 60 4.511527 TGATTCCATCAACTCTGAGAAGC 58.488 43.478 12.44 0.00 36.11 3.86
60 61 3.340814 TTCCATCAACTCTGAGAAGCC 57.659 47.619 12.44 0.00 34.23 4.35
61 62 1.205655 TCCATCAACTCTGAGAAGCCG 59.794 52.381 12.44 0.00 34.23 5.52
62 63 1.005340 CATCAACTCTGAGAAGCCGC 58.995 55.000 12.44 0.00 34.23 6.53
63 64 0.107945 ATCAACTCTGAGAAGCCGCC 60.108 55.000 12.44 0.00 34.23 6.13
64 65 1.004560 CAACTCTGAGAAGCCGCCA 60.005 57.895 12.44 0.00 0.00 5.69
65 66 0.392193 CAACTCTGAGAAGCCGCCAT 60.392 55.000 12.44 0.00 0.00 4.40
66 67 0.392193 AACTCTGAGAAGCCGCCATG 60.392 55.000 12.44 0.00 0.00 3.66
67 68 1.260538 ACTCTGAGAAGCCGCCATGA 61.261 55.000 12.44 0.00 0.00 3.07
68 69 0.107993 CTCTGAGAAGCCGCCATGAA 60.108 55.000 0.00 0.00 0.00 2.57
69 70 0.107993 TCTGAGAAGCCGCCATGAAG 60.108 55.000 0.00 0.00 0.00 3.02
70 71 0.107993 CTGAGAAGCCGCCATGAAGA 60.108 55.000 0.00 0.00 0.00 2.87
71 72 0.107993 TGAGAAGCCGCCATGAAGAG 60.108 55.000 0.00 0.00 0.00 2.85
72 73 1.435408 GAGAAGCCGCCATGAAGAGC 61.435 60.000 0.00 0.00 0.00 4.09
73 74 1.746615 GAAGCCGCCATGAAGAGCA 60.747 57.895 0.00 0.00 0.00 4.26
74 75 1.986575 GAAGCCGCCATGAAGAGCAC 61.987 60.000 0.00 0.00 0.00 4.40
75 76 3.512516 GCCGCCATGAAGAGCACC 61.513 66.667 0.00 0.00 0.00 5.01
76 77 3.197790 CCGCCATGAAGAGCACCG 61.198 66.667 0.00 0.00 0.00 4.94
77 78 3.869272 CGCCATGAAGAGCACCGC 61.869 66.667 0.00 0.00 0.00 5.68
78 79 3.512516 GCCATGAAGAGCACCGCC 61.513 66.667 0.00 0.00 0.00 6.13
79 80 3.197790 CCATGAAGAGCACCGCCG 61.198 66.667 0.00 0.00 0.00 6.46
80 81 3.197790 CATGAAGAGCACCGCCGG 61.198 66.667 0.00 0.00 0.00 6.13
81 82 3.706373 ATGAAGAGCACCGCCGGT 61.706 61.111 1.02 1.02 35.62 5.28
90 91 2.282674 ACCGCCGGTGTCAGAGTA 60.283 61.111 8.62 0.00 32.98 2.59
91 92 2.341101 ACCGCCGGTGTCAGAGTAG 61.341 63.158 8.62 0.00 32.98 2.57
92 93 2.044555 CCGCCGGTGTCAGAGTAGA 61.045 63.158 15.14 0.00 0.00 2.59
93 94 1.429825 CGCCGGTGTCAGAGTAGAG 59.570 63.158 6.91 0.00 0.00 2.43
94 95 1.306642 CGCCGGTGTCAGAGTAGAGT 61.307 60.000 6.91 0.00 0.00 3.24
95 96 0.889306 GCCGGTGTCAGAGTAGAGTT 59.111 55.000 1.90 0.00 0.00 3.01
96 97 1.402984 GCCGGTGTCAGAGTAGAGTTG 60.403 57.143 1.90 0.00 0.00 3.16
97 98 2.160205 CCGGTGTCAGAGTAGAGTTGA 58.840 52.381 0.00 0.00 0.00 3.18
98 99 2.755655 CCGGTGTCAGAGTAGAGTTGAT 59.244 50.000 0.00 0.00 0.00 2.57
99 100 3.428180 CCGGTGTCAGAGTAGAGTTGATG 60.428 52.174 0.00 0.00 0.00 3.07
100 101 3.516615 GGTGTCAGAGTAGAGTTGATGC 58.483 50.000 0.00 0.00 0.00 3.91
101 102 3.056536 GGTGTCAGAGTAGAGTTGATGCA 60.057 47.826 0.00 0.00 0.00 3.96
102 103 4.172505 GTGTCAGAGTAGAGTTGATGCAG 58.827 47.826 0.00 0.00 0.00 4.41
103 104 3.829026 TGTCAGAGTAGAGTTGATGCAGT 59.171 43.478 0.00 0.00 0.00 4.40
104 105 4.281941 TGTCAGAGTAGAGTTGATGCAGTT 59.718 41.667 0.00 0.00 0.00 3.16
105 106 5.221521 TGTCAGAGTAGAGTTGATGCAGTTT 60.222 40.000 0.00 0.00 0.00 2.66
106 107 6.015434 TGTCAGAGTAGAGTTGATGCAGTTTA 60.015 38.462 0.00 0.00 0.00 2.01
107 108 7.038659 GTCAGAGTAGAGTTGATGCAGTTTAT 58.961 38.462 0.00 0.00 0.00 1.40
108 109 7.547370 GTCAGAGTAGAGTTGATGCAGTTTATT 59.453 37.037 0.00 0.00 0.00 1.40
109 110 7.761704 TCAGAGTAGAGTTGATGCAGTTTATTC 59.238 37.037 0.00 0.00 0.00 1.75
110 111 6.754209 AGAGTAGAGTTGATGCAGTTTATTCG 59.246 38.462 0.00 0.00 0.00 3.34
111 112 6.398918 AGTAGAGTTGATGCAGTTTATTCGT 58.601 36.000 0.00 0.00 0.00 3.85
112 113 5.786401 AGAGTTGATGCAGTTTATTCGTC 57.214 39.130 0.00 0.00 0.00 4.20
113 114 4.631813 AGAGTTGATGCAGTTTATTCGTCC 59.368 41.667 0.00 0.00 0.00 4.79
114 115 3.370978 AGTTGATGCAGTTTATTCGTCCG 59.629 43.478 0.00 0.00 0.00 4.79
115 116 2.276201 TGATGCAGTTTATTCGTCCGG 58.724 47.619 0.00 0.00 0.00 5.14
116 117 1.597663 GATGCAGTTTATTCGTCCGGG 59.402 52.381 0.00 0.00 0.00 5.73
117 118 1.022451 TGCAGTTTATTCGTCCGGGC 61.022 55.000 0.00 0.00 0.00 6.13
118 119 2.003672 CAGTTTATTCGTCCGGGCG 58.996 57.895 25.52 25.52 0.00 6.13
119 120 1.812507 AGTTTATTCGTCCGGGCGC 60.813 57.895 26.77 8.75 0.00 6.53
120 121 2.512057 TTTATTCGTCCGGGCGCC 60.512 61.111 26.77 21.18 0.00 6.53
136 137 4.263572 CCGCTCCCACCACCACAA 62.264 66.667 0.00 0.00 0.00 3.33
137 138 2.034066 CGCTCCCACCACCACAAT 59.966 61.111 0.00 0.00 0.00 2.71
138 139 1.298340 CGCTCCCACCACCACAATA 59.702 57.895 0.00 0.00 0.00 1.90
139 140 0.322098 CGCTCCCACCACCACAATAA 60.322 55.000 0.00 0.00 0.00 1.40
140 141 1.173913 GCTCCCACCACCACAATAAC 58.826 55.000 0.00 0.00 0.00 1.89
141 142 1.448985 CTCCCACCACCACAATAACG 58.551 55.000 0.00 0.00 0.00 3.18
142 143 0.606944 TCCCACCACCACAATAACGC 60.607 55.000 0.00 0.00 0.00 4.84
143 144 0.891449 CCCACCACCACAATAACGCA 60.891 55.000 0.00 0.00 0.00 5.24
144 145 0.239879 CCACCACCACAATAACGCAC 59.760 55.000 0.00 0.00 0.00 5.34
145 146 0.239879 CACCACCACAATAACGCACC 59.760 55.000 0.00 0.00 0.00 5.01
146 147 0.179015 ACCACCACAATAACGCACCA 60.179 50.000 0.00 0.00 0.00 4.17
147 148 1.173043 CCACCACAATAACGCACCAT 58.827 50.000 0.00 0.00 0.00 3.55
148 149 1.135431 CCACCACAATAACGCACCATG 60.135 52.381 0.00 0.00 0.00 3.66
149 150 1.809547 CACCACAATAACGCACCATGA 59.190 47.619 0.00 0.00 0.00 3.07
150 151 1.810151 ACCACAATAACGCACCATGAC 59.190 47.619 0.00 0.00 0.00 3.06
151 152 1.132262 CCACAATAACGCACCATGACC 59.868 52.381 0.00 0.00 0.00 4.02
152 153 2.083774 CACAATAACGCACCATGACCT 58.916 47.619 0.00 0.00 0.00 3.85
153 154 3.266636 CACAATAACGCACCATGACCTA 58.733 45.455 0.00 0.00 0.00 3.08
154 155 3.063452 CACAATAACGCACCATGACCTAC 59.937 47.826 0.00 0.00 0.00 3.18
155 156 3.266636 CAATAACGCACCATGACCTACA 58.733 45.455 0.00 0.00 0.00 2.74
156 157 3.620427 ATAACGCACCATGACCTACAA 57.380 42.857 0.00 0.00 0.00 2.41
157 158 2.264005 AACGCACCATGACCTACAAA 57.736 45.000 0.00 0.00 0.00 2.83
158 159 2.489938 ACGCACCATGACCTACAAAT 57.510 45.000 0.00 0.00 0.00 2.32
159 160 2.356135 ACGCACCATGACCTACAAATC 58.644 47.619 0.00 0.00 0.00 2.17
160 161 1.670811 CGCACCATGACCTACAAATCC 59.329 52.381 0.00 0.00 0.00 3.01
161 162 2.722094 GCACCATGACCTACAAATCCA 58.278 47.619 0.00 0.00 0.00 3.41
162 163 3.088532 GCACCATGACCTACAAATCCAA 58.911 45.455 0.00 0.00 0.00 3.53
163 164 3.509575 GCACCATGACCTACAAATCCAAA 59.490 43.478 0.00 0.00 0.00 3.28
164 165 4.021544 GCACCATGACCTACAAATCCAAAA 60.022 41.667 0.00 0.00 0.00 2.44
165 166 5.469479 CACCATGACCTACAAATCCAAAAC 58.531 41.667 0.00 0.00 0.00 2.43
166 167 4.526650 ACCATGACCTACAAATCCAAAACC 59.473 41.667 0.00 0.00 0.00 3.27
167 168 4.772100 CCATGACCTACAAATCCAAAACCT 59.228 41.667 0.00 0.00 0.00 3.50
168 169 5.949354 CCATGACCTACAAATCCAAAACCTA 59.051 40.000 0.00 0.00 0.00 3.08
169 170 6.435904 CCATGACCTACAAATCCAAAACCTAA 59.564 38.462 0.00 0.00 0.00 2.69
170 171 6.887626 TGACCTACAAATCCAAAACCTAAC 57.112 37.500 0.00 0.00 0.00 2.34
171 172 6.607019 TGACCTACAAATCCAAAACCTAACT 58.393 36.000 0.00 0.00 0.00 2.24
172 173 7.747690 TGACCTACAAATCCAAAACCTAACTA 58.252 34.615 0.00 0.00 0.00 2.24
173 174 7.662669 TGACCTACAAATCCAAAACCTAACTAC 59.337 37.037 0.00 0.00 0.00 2.73
174 175 6.944290 ACCTACAAATCCAAAACCTAACTACC 59.056 38.462 0.00 0.00 0.00 3.18
175 176 5.952526 ACAAATCCAAAACCTAACTACCG 57.047 39.130 0.00 0.00 0.00 4.02
176 177 5.623169 ACAAATCCAAAACCTAACTACCGA 58.377 37.500 0.00 0.00 0.00 4.69
177 178 5.704053 ACAAATCCAAAACCTAACTACCGAG 59.296 40.000 0.00 0.00 0.00 4.63
178 179 3.323751 TCCAAAACCTAACTACCGAGC 57.676 47.619 0.00 0.00 0.00 5.03
179 180 1.997606 CCAAAACCTAACTACCGAGCG 59.002 52.381 0.00 0.00 0.00 5.03
180 181 1.997606 CAAAACCTAACTACCGAGCGG 59.002 52.381 7.48 7.48 42.03 5.52
181 182 1.549203 AAACCTAACTACCGAGCGGA 58.451 50.000 16.83 0.00 38.96 5.54
182 183 1.101331 AACCTAACTACCGAGCGGAG 58.899 55.000 16.83 10.80 38.96 4.63
183 184 0.750911 ACCTAACTACCGAGCGGAGG 60.751 60.000 16.83 13.36 38.96 4.30
184 185 0.465097 CCTAACTACCGAGCGGAGGA 60.465 60.000 16.83 0.00 38.96 3.71
185 186 1.386533 CTAACTACCGAGCGGAGGAA 58.613 55.000 16.83 0.00 38.96 3.36
186 187 1.065251 CTAACTACCGAGCGGAGGAAC 59.935 57.143 16.83 0.00 38.96 3.62
187 188 1.930908 AACTACCGAGCGGAGGAACG 61.931 60.000 16.83 0.00 38.96 3.95
192 193 4.144703 GAGCGGAGGAACGGGGTC 62.145 72.222 0.00 0.00 0.00 4.46
206 207 2.277404 GGTCCGCCCTCTCTCTCT 59.723 66.667 0.00 0.00 0.00 3.10
207 208 1.380650 GGTCCGCCCTCTCTCTCTT 60.381 63.158 0.00 0.00 0.00 2.85
208 209 0.106619 GGTCCGCCCTCTCTCTCTTA 60.107 60.000 0.00 0.00 0.00 2.10
209 210 1.026584 GTCCGCCCTCTCTCTCTTAC 58.973 60.000 0.00 0.00 0.00 2.34
210 211 0.106619 TCCGCCCTCTCTCTCTTACC 60.107 60.000 0.00 0.00 0.00 2.85
211 212 1.448922 CCGCCCTCTCTCTCTTACCG 61.449 65.000 0.00 0.00 0.00 4.02
212 213 0.748729 CGCCCTCTCTCTCTTACCGT 60.749 60.000 0.00 0.00 0.00 4.83
213 214 1.026584 GCCCTCTCTCTCTTACCGTC 58.973 60.000 0.00 0.00 0.00 4.79
214 215 1.301423 CCCTCTCTCTCTTACCGTCG 58.699 60.000 0.00 0.00 0.00 5.12
215 216 1.301423 CCTCTCTCTCTTACCGTCGG 58.699 60.000 10.48 10.48 0.00 4.79
216 217 1.134461 CCTCTCTCTCTTACCGTCGGA 60.134 57.143 20.51 0.00 0.00 4.55
217 218 2.206750 CTCTCTCTCTTACCGTCGGAG 58.793 57.143 20.51 5.89 0.00 4.63
218 219 0.658897 CTCTCTCTTACCGTCGGAGC 59.341 60.000 20.51 0.00 0.00 4.70
219 220 0.035725 TCTCTCTTACCGTCGGAGCA 60.036 55.000 20.51 0.00 0.00 4.26
220 221 0.378962 CTCTCTTACCGTCGGAGCAG 59.621 60.000 20.51 10.34 0.00 4.24
221 222 0.322277 TCTCTTACCGTCGGAGCAGT 60.322 55.000 20.51 0.00 0.00 4.40
222 223 0.179161 CTCTTACCGTCGGAGCAGTG 60.179 60.000 20.51 7.44 0.00 3.66
223 224 0.607217 TCTTACCGTCGGAGCAGTGA 60.607 55.000 20.51 4.33 0.00 3.41
224 225 0.456221 CTTACCGTCGGAGCAGTGAT 59.544 55.000 20.51 0.00 0.00 3.06
225 226 0.454600 TTACCGTCGGAGCAGTGATC 59.545 55.000 20.51 0.00 0.00 2.92
226 227 1.712018 TACCGTCGGAGCAGTGATCG 61.712 60.000 20.51 0.00 0.00 3.69
227 228 2.761195 CCGTCGGAGCAGTGATCGA 61.761 63.158 4.91 0.66 0.00 3.59
228 229 1.136774 CGTCGGAGCAGTGATCGAA 59.863 57.895 1.64 0.00 33.33 3.71
229 230 0.863538 CGTCGGAGCAGTGATCGAAG 60.864 60.000 1.64 2.51 33.33 3.79
230 231 0.526524 GTCGGAGCAGTGATCGAAGG 60.527 60.000 1.64 0.00 33.33 3.46
231 232 1.227089 CGGAGCAGTGATCGAAGGG 60.227 63.158 1.64 0.00 0.00 3.95
232 233 1.667154 CGGAGCAGTGATCGAAGGGA 61.667 60.000 1.64 0.00 0.00 4.20
233 234 0.103937 GGAGCAGTGATCGAAGGGAG 59.896 60.000 1.64 0.00 0.00 4.30
234 235 1.107114 GAGCAGTGATCGAAGGGAGA 58.893 55.000 0.00 0.00 0.00 3.71
235 236 1.066908 GAGCAGTGATCGAAGGGAGAG 59.933 57.143 0.00 0.00 0.00 3.20
236 237 0.103937 GCAGTGATCGAAGGGAGAGG 59.896 60.000 0.00 0.00 0.00 3.69
237 238 0.749649 CAGTGATCGAAGGGAGAGGG 59.250 60.000 0.00 0.00 0.00 4.30
238 239 0.397816 AGTGATCGAAGGGAGAGGGG 60.398 60.000 0.00 0.00 0.00 4.79
239 240 1.762460 TGATCGAAGGGAGAGGGGC 60.762 63.158 0.00 0.00 0.00 5.80
240 241 2.446802 ATCGAAGGGAGAGGGGCC 60.447 66.667 0.00 0.00 0.00 5.80
241 242 4.798682 TCGAAGGGAGAGGGGCCC 62.799 72.222 17.12 17.12 46.40 5.80
260 261 4.899239 GCGCCTCATCCGGTGGAG 62.899 72.222 15.36 15.36 34.05 3.86
261 262 3.147595 CGCCTCATCCGGTGGAGA 61.148 66.667 21.47 7.09 34.05 3.71
262 263 2.502492 CGCCTCATCCGGTGGAGAT 61.502 63.158 21.47 0.00 34.05 2.75
263 264 1.369321 GCCTCATCCGGTGGAGATC 59.631 63.158 21.47 11.82 34.05 2.75
264 265 1.662608 CCTCATCCGGTGGAGATCG 59.337 63.158 21.47 6.22 34.05 3.69
270 271 3.935024 CGGTGGAGATCGGAGGAA 58.065 61.111 0.00 0.00 0.00 3.36
271 272 2.199117 CGGTGGAGATCGGAGGAAA 58.801 57.895 0.00 0.00 0.00 3.13
272 273 0.103208 CGGTGGAGATCGGAGGAAAG 59.897 60.000 0.00 0.00 0.00 2.62
273 274 1.486211 GGTGGAGATCGGAGGAAAGA 58.514 55.000 0.00 0.00 0.00 2.52
274 275 1.410882 GGTGGAGATCGGAGGAAAGAG 59.589 57.143 0.00 0.00 0.00 2.85
275 276 2.379972 GTGGAGATCGGAGGAAAGAGA 58.620 52.381 0.00 0.00 0.00 3.10
276 277 2.962421 GTGGAGATCGGAGGAAAGAGAT 59.038 50.000 0.00 0.00 0.00 2.75
277 278 3.005367 GTGGAGATCGGAGGAAAGAGATC 59.995 52.174 0.00 0.00 39.64 2.75
278 279 2.227865 GGAGATCGGAGGAAAGAGATCG 59.772 54.545 0.00 0.00 42.94 3.69
279 280 1.611491 AGATCGGAGGAAAGAGATCGC 59.389 52.381 0.00 0.00 42.94 4.58
280 281 0.676736 ATCGGAGGAAAGAGATCGCC 59.323 55.000 0.00 0.00 0.00 5.54
281 282 1.068250 CGGAGGAAAGAGATCGCCC 59.932 63.158 0.00 0.00 0.00 6.13
282 283 1.448069 GGAGGAAAGAGATCGCCCC 59.552 63.158 0.00 0.00 0.00 5.80
283 284 1.448069 GAGGAAAGAGATCGCCCCC 59.552 63.158 0.00 0.00 0.00 5.40
298 299 3.854669 CCCCTAGTCGCCTGGCTG 61.855 72.222 17.92 10.52 0.00 4.85
299 300 3.854669 CCCTAGTCGCCTGGCTGG 61.855 72.222 17.92 5.98 39.35 4.85
300 301 3.077556 CCTAGTCGCCTGGCTGGT 61.078 66.667 17.92 2.89 38.35 4.00
301 302 1.756950 CCTAGTCGCCTGGCTGGTA 60.757 63.158 17.92 3.98 38.35 3.25
302 303 1.736586 CTAGTCGCCTGGCTGGTAG 59.263 63.158 17.92 10.00 38.35 3.18
303 304 2.356818 CTAGTCGCCTGGCTGGTAGC 62.357 65.000 17.92 2.67 41.46 3.58
308 309 4.473520 CCTGGCTGGTAGCGGTGG 62.474 72.222 1.62 0.00 43.62 4.61
319 320 3.625099 GCGGTGGCTAGGGTAGAA 58.375 61.111 0.00 0.00 35.83 2.10
320 321 1.902556 GCGGTGGCTAGGGTAGAAA 59.097 57.895 0.00 0.00 35.83 2.52
321 322 0.251073 GCGGTGGCTAGGGTAGAAAA 59.749 55.000 0.00 0.00 35.83 2.29
322 323 1.339342 GCGGTGGCTAGGGTAGAAAAA 60.339 52.381 0.00 0.00 35.83 1.94
339 340 2.875080 AAAACGATTACGCTGCAGTC 57.125 45.000 16.64 6.83 43.96 3.51
340 341 1.790755 AAACGATTACGCTGCAGTCA 58.209 45.000 16.64 0.00 43.96 3.41
341 342 1.790755 AACGATTACGCTGCAGTCAA 58.209 45.000 16.64 7.38 43.96 3.18
342 343 2.010145 ACGATTACGCTGCAGTCAAT 57.990 45.000 16.64 11.91 43.96 2.57
343 344 1.660607 ACGATTACGCTGCAGTCAATG 59.339 47.619 16.64 9.33 43.96 2.82
344 345 1.004610 CGATTACGCTGCAGTCAATGG 60.005 52.381 16.64 9.61 0.00 3.16
345 346 2.279741 GATTACGCTGCAGTCAATGGA 58.720 47.619 16.64 0.00 0.00 3.41
346 347 2.177394 TTACGCTGCAGTCAATGGAA 57.823 45.000 16.64 0.71 0.00 3.53
347 348 2.177394 TACGCTGCAGTCAATGGAAA 57.823 45.000 16.64 0.00 0.00 3.13
348 349 1.317613 ACGCTGCAGTCAATGGAAAA 58.682 45.000 16.64 0.00 0.00 2.29
349 350 1.001378 ACGCTGCAGTCAATGGAAAAC 60.001 47.619 16.64 0.00 0.00 2.43
350 351 1.001487 CGCTGCAGTCAATGGAAAACA 60.001 47.619 16.64 0.00 0.00 2.83
351 352 2.543445 CGCTGCAGTCAATGGAAAACAA 60.543 45.455 16.64 0.00 0.00 2.83
352 353 3.054878 GCTGCAGTCAATGGAAAACAAG 58.945 45.455 16.64 0.00 0.00 3.16
353 354 3.243501 GCTGCAGTCAATGGAAAACAAGA 60.244 43.478 16.64 0.00 0.00 3.02
354 355 4.293415 CTGCAGTCAATGGAAAACAAGAC 58.707 43.478 5.25 0.00 38.03 3.01
355 356 3.243035 TGCAGTCAATGGAAAACAAGACG 60.243 43.478 0.00 0.00 40.81 4.18
356 357 3.243068 GCAGTCAATGGAAAACAAGACGT 60.243 43.478 0.00 0.00 40.81 4.34
357 358 4.733523 GCAGTCAATGGAAAACAAGACGTT 60.734 41.667 0.00 0.00 40.81 3.99
358 359 4.970003 CAGTCAATGGAAAACAAGACGTTC 59.030 41.667 0.00 0.00 40.81 3.95
359 360 4.881850 AGTCAATGGAAAACAAGACGTTCT 59.118 37.500 0.00 0.00 40.81 3.01
360 361 5.007724 AGTCAATGGAAAACAAGACGTTCTC 59.992 40.000 0.00 0.00 40.81 2.87
361 362 4.274950 TCAATGGAAAACAAGACGTTCTCC 59.725 41.667 0.00 0.00 44.02 3.71
362 363 2.206750 TGGAAAACAAGACGTTCTCCG 58.793 47.619 0.00 0.00 46.34 4.63
363 364 1.529865 GGAAAACAAGACGTTCTCCGG 59.470 52.381 0.00 0.00 35.04 5.14
369 370 2.882876 GACGTTCTCCGGCTGCTA 59.117 61.111 0.00 0.00 43.06 3.49
370 371 1.226717 GACGTTCTCCGGCTGCTAG 60.227 63.158 0.00 0.00 43.06 3.42
371 372 1.935327 GACGTTCTCCGGCTGCTAGT 61.935 60.000 0.00 0.00 43.06 2.57
372 373 1.226717 CGTTCTCCGGCTGCTAGTC 60.227 63.158 0.00 0.00 0.00 2.59
373 374 1.658686 CGTTCTCCGGCTGCTAGTCT 61.659 60.000 0.00 0.00 0.00 3.24
374 375 0.533032 GTTCTCCGGCTGCTAGTCTT 59.467 55.000 0.00 0.00 0.00 3.01
416 417 1.792949 GTTGAGTTCGATTCACACGCT 59.207 47.619 0.07 0.00 0.00 5.07
450 451 1.067142 AGGGCGCCACATATATGTACG 60.067 52.381 30.85 25.14 39.39 3.67
451 452 1.337447 GGGCGCCACATATATGTACGT 60.337 52.381 30.85 0.00 39.39 3.57
458 459 3.176708 CACATATATGTACGTAGGCCGC 58.823 50.000 17.86 0.00 39.39 6.53
478 479 1.375551 GTATCGGCGTGGGTGAAAAT 58.624 50.000 6.85 0.00 0.00 1.82
488 489 5.512576 GGCGTGGGTGAAAATACTATCCTAT 60.513 44.000 0.00 0.00 0.00 2.57
509 511 8.930527 TCCTATCTTTTATTACGATGAAAGGGA 58.069 33.333 0.00 0.00 38.63 4.20
616 619 9.173939 CACACAATTGAGTTTAAACTGAAGATC 57.826 33.333 25.17 10.39 39.88 2.75
625 628 9.670719 GAGTTTAAACTGAAGATCTTTTCCAAG 57.329 33.333 25.17 5.62 39.88 3.61
632 635 5.694995 TGAAGATCTTTTCCAAGGACAGTT 58.305 37.500 9.87 0.00 0.00 3.16
654 664 5.791336 TGGATAGATAGACGTGCAAGATT 57.209 39.130 6.65 0.00 0.00 2.40
657 667 7.047891 TGGATAGATAGACGTGCAAGATTTTT 58.952 34.615 6.65 0.00 0.00 1.94
843 861 6.598503 TGCACAAGATCAATCTCCAGATAAT 58.401 36.000 0.00 0.00 35.76 1.28
844 862 7.058525 TGCACAAGATCAATCTCCAGATAATT 58.941 34.615 0.00 0.00 35.76 1.40
878 935 5.696724 ACAAAGATCTCTTTCCGTACAACAG 59.303 40.000 0.00 0.00 43.72 3.16
883 940 3.576982 TCTCTTTCCGTACAACAGACCAT 59.423 43.478 0.00 0.00 0.00 3.55
915 982 7.095774 CGTTCCTATACCATTTAAACGATCCTG 60.096 40.741 0.00 0.00 40.10 3.86
917 984 5.120208 CCTATACCATTTAAACGATCCTGCG 59.880 44.000 0.00 0.00 37.29 5.18
949 1041 1.102978 CATCCCAAATTCCACCGGTC 58.897 55.000 2.59 0.00 0.00 4.79
1015 1123 2.918248 CCATGGATTCCCGCTCCA 59.082 61.111 5.56 0.00 46.45 3.86
1110 1218 3.920817 TCCAGGGTGTTGGAGCAT 58.079 55.556 0.00 0.00 42.24 3.79
1113 1221 0.967380 CCAGGGTGTTGGAGCATTCC 60.967 60.000 0.00 0.00 44.31 3.01
1149 1257 0.250338 AGAACCGGTTGCTCTTCACC 60.250 55.000 27.87 6.67 0.00 4.02
1150 1258 0.534203 GAACCGGTTGCTCTTCACCA 60.534 55.000 27.87 0.00 0.00 4.17
1190 1298 2.812619 CCATCCCGGAGCTCTTCCC 61.813 68.421 14.64 0.00 43.63 3.97
1237 1345 1.009389 CCTGAACGCCGAGAACAGAC 61.009 60.000 0.00 0.00 0.00 3.51
1241 1349 0.241481 AACGCCGAGAACAGACTCTC 59.759 55.000 0.00 0.00 38.82 3.20
1284 1392 1.251527 GCCGTGAGAAGGAGGTGAGA 61.252 60.000 0.00 0.00 0.00 3.27
1288 1396 2.802719 GTGAGAAGGAGGTGAGACTCT 58.197 52.381 3.68 0.00 37.63 3.24
1289 1397 2.491693 GTGAGAAGGAGGTGAGACTCTG 59.508 54.545 3.68 0.00 37.63 3.35
1302 1410 2.088423 AGACTCTGCTACCTCAACTCG 58.912 52.381 0.00 0.00 0.00 4.18
1304 1412 2.488545 GACTCTGCTACCTCAACTCGAA 59.511 50.000 0.00 0.00 0.00 3.71
1310 1418 2.338500 CTACCTCAACTCGAACAAGGC 58.662 52.381 3.43 0.00 0.00 4.35
1318 1426 2.203972 CTCGAACAAGGCGTACCGGA 62.204 60.000 9.46 0.00 42.76 5.14
1323 1431 0.179084 ACAAGGCGTACCGGATCATG 60.179 55.000 9.46 0.00 42.76 3.07
1326 1434 2.030562 GCGTACCGGATCATGGGG 59.969 66.667 9.46 0.00 0.00 4.96
1328 1436 1.466025 GCGTACCGGATCATGGGGTA 61.466 60.000 9.46 4.55 35.28 3.69
1329 1437 1.263356 CGTACCGGATCATGGGGTAT 58.737 55.000 9.46 0.00 38.48 2.73
1330 1438 2.449464 CGTACCGGATCATGGGGTATA 58.551 52.381 9.46 0.00 38.48 1.47
1446 1554 1.973812 GTTCAGGAGCAAGGGTGGC 60.974 63.158 0.00 0.00 0.00 5.01
1590 1698 1.373748 GGCGCTGTCGAAGGTGTTA 60.374 57.895 7.64 0.00 38.10 2.41
1591 1699 0.947180 GGCGCTGTCGAAGGTGTTAA 60.947 55.000 7.64 0.00 38.10 2.01
1592 1700 1.076332 GCGCTGTCGAAGGTGTTAAT 58.924 50.000 0.00 0.00 38.10 1.40
1764 1872 1.954362 CTGAGGGCCGTGAGAAGGAG 61.954 65.000 5.96 0.00 0.00 3.69
1802 1911 0.606604 AACTCGAACATGGCGTACCT 59.393 50.000 9.55 0.00 36.63 3.08
1817 1926 2.543861 CGTACCTGATCATTGGGTCTCG 60.544 54.545 8.32 10.69 34.86 4.04
1932 2047 3.333219 TTCAGGAGCCAGGGCAGG 61.333 66.667 13.63 0.00 44.88 4.85
2021 2136 1.136252 CGTCGTCAATGGCAGTCAAAG 60.136 52.381 0.00 0.00 0.00 2.77
2032 2147 2.485814 GGCAGTCAAAGTGATCCAAGAC 59.514 50.000 0.00 0.00 0.00 3.01
2045 2160 0.609131 CCAAGACCCCGCTTGTGATT 60.609 55.000 0.00 0.00 42.84 2.57
2061 2176 5.017294 TGTGATTGTTCGAGGTATATGCA 57.983 39.130 0.00 0.00 0.00 3.96
2062 2177 5.049828 TGTGATTGTTCGAGGTATATGCAG 58.950 41.667 0.00 0.00 0.00 4.41
2086 2201 7.693951 CAGTTGATTGGTGAGATTAAATCGTTC 59.306 37.037 0.00 0.00 32.78 3.95
2089 2204 7.696755 TGATTGGTGAGATTAAATCGTTCATG 58.303 34.615 0.00 0.00 32.78 3.07
2111 2235 1.146452 TCAGGATAGGGAGAGGCGTA 58.854 55.000 0.00 0.00 0.00 4.42
2164 2288 5.205759 AGCCAAAAATTCTCCTTTGTCAG 57.794 39.130 0.94 0.00 31.84 3.51
2178 2302 7.120285 TCTCCTTTGTCAGAAAAATGCAGATAG 59.880 37.037 0.00 0.00 0.00 2.08
2184 2308 7.168219 TGTCAGAAAAATGCAGATAGGTTAGT 58.832 34.615 0.00 0.00 0.00 2.24
2196 2320 0.321653 AGGTTAGTTGGCTGCTTCGG 60.322 55.000 0.00 0.00 0.00 4.30
2218 2342 5.646360 CGGTTTTTCTGCCCTAAAATAGAGA 59.354 40.000 0.00 0.00 0.00 3.10
2219 2343 6.183360 CGGTTTTTCTGCCCTAAAATAGAGAG 60.183 42.308 0.00 0.00 0.00 3.20
2225 2349 3.454812 TGCCCTAAAATAGAGAGTGTCCC 59.545 47.826 0.00 0.00 0.00 4.46
2238 2362 5.359009 AGAGAGTGTCCCATGCATAATTTTG 59.641 40.000 0.00 0.00 0.00 2.44
2248 2374 8.370940 TCCCATGCATAATTTTGTTGAGTTTTA 58.629 29.630 0.00 0.00 0.00 1.52
2276 2402 5.462530 TGTCTTGTCAAGTATTTCCTCGA 57.537 39.130 12.30 0.00 0.00 4.04
2277 2403 6.037786 TGTCTTGTCAAGTATTTCCTCGAT 57.962 37.500 12.30 0.00 0.00 3.59
2278 2404 6.100004 TGTCTTGTCAAGTATTTCCTCGATC 58.900 40.000 12.30 0.00 0.00 3.69
2279 2405 5.230306 GTCTTGTCAAGTATTTCCTCGATCG 59.770 44.000 9.36 9.36 0.00 3.69
2284 2410 4.401519 TCAAGTATTTCCTCGATCGGTTCT 59.598 41.667 16.41 0.57 0.00 3.01
2293 2419 5.726397 TCCTCGATCGGTTCTCAAAATAAA 58.274 37.500 16.41 0.00 0.00 1.40
2296 2422 6.037172 CCTCGATCGGTTCTCAAAATAAATGT 59.963 38.462 16.41 0.00 0.00 2.71
2337 2463 8.658499 ACTTTACAACGGATGAATAAGTATCC 57.342 34.615 0.00 0.00 39.56 2.59
2338 2464 8.262227 ACTTTACAACGGATGAATAAGTATCCA 58.738 33.333 0.00 0.00 42.39 3.41
2339 2465 9.273016 CTTTACAACGGATGAATAAGTATCCAT 57.727 33.333 0.00 0.00 42.39 3.41
2340 2466 8.601845 TTACAACGGATGAATAAGTATCCATG 57.398 34.615 0.00 0.00 42.39 3.66
2341 2467 5.470098 ACAACGGATGAATAAGTATCCATGC 59.530 40.000 0.00 0.00 42.39 4.06
2342 2468 5.227569 ACGGATGAATAAGTATCCATGCA 57.772 39.130 0.00 0.00 42.39 3.96
2343 2469 5.809001 ACGGATGAATAAGTATCCATGCAT 58.191 37.500 0.00 0.00 42.39 3.96
2344 2470 5.645067 ACGGATGAATAAGTATCCATGCATG 59.355 40.000 20.19 20.19 42.39 4.06
2345 2471 5.876460 CGGATGAATAAGTATCCATGCATGA 59.124 40.000 28.31 14.16 42.39 3.07
2346 2472 6.541278 CGGATGAATAAGTATCCATGCATGAT 59.459 38.462 28.31 19.64 42.39 2.45
2347 2473 7.466860 CGGATGAATAAGTATCCATGCATGATG 60.467 40.741 28.31 12.34 42.39 3.07
2348 2474 6.505044 TGAATAAGTATCCATGCATGATGC 57.495 37.500 28.31 20.02 45.29 3.91
2418 2544 7.426929 GAGAAACTGAAATTCTCTTACTGCA 57.573 36.000 8.61 0.00 45.96 4.41
2446 2572 3.313249 TCAGCAAATCAATACATGCGGAG 59.687 43.478 0.00 0.00 43.39 4.63
2451 2577 5.448496 GCAAATCAATACATGCGGAGTGTAA 60.448 40.000 0.00 0.00 35.84 2.41
2654 2780 9.178758 GTTGAATACTCCCTCTGTTCATTTATT 57.821 33.333 0.00 0.00 0.00 1.40
2681 2807 4.023536 GGTGTATTATTTACGGCATGGTGG 60.024 45.833 0.00 0.00 0.00 4.61
2703 2829 7.041098 GGTGGAAGGCACATAATTATAGTGAAG 60.041 40.741 21.88 5.00 35.33 3.02
2710 2836 9.726438 GGCACATAATTATAGTGAAGTTAGGAT 57.274 33.333 21.88 0.00 35.33 3.24
2724 2850 7.610305 GTGAAGTTAGGATGAAATTACCCTTGA 59.390 37.037 0.00 0.00 0.00 3.02
2728 2854 9.547279 AGTTAGGATGAAATTACCCTTGAAAAT 57.453 29.630 0.00 0.00 0.00 1.82
2732 2858 9.506018 AGGATGAAATTACCCTTGAAAATTTTG 57.494 29.630 8.47 0.00 33.99 2.44
2762 2888 5.865085 TGTGGCAAGTAAATCAGTTAGTCT 58.135 37.500 0.00 0.00 0.00 3.24
2764 2890 7.097192 TGTGGCAAGTAAATCAGTTAGTCTAG 58.903 38.462 0.00 0.00 0.00 2.43
2823 2949 9.706529 ATTTTTCTTCTTTTGCTATAGGGAGAT 57.293 29.630 1.04 0.00 0.00 2.75
2845 2971 9.855021 GAGATATAGAGAGATGCTAACCTTTTC 57.145 37.037 0.00 0.00 0.00 2.29
2855 2981 2.941860 GCTAACCTTTTCTCTGGAGGGC 60.942 54.545 0.00 0.00 34.81 5.19
2912 3038 9.669887 ATGCACCATACATTGTGAAATTTTATT 57.330 25.926 0.00 0.00 34.37 1.40
2914 3040 8.603181 GCACCATACATTGTGAAATTTTATTCC 58.397 33.333 0.00 0.00 34.37 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.322254 CCTTAGATCGGCAGTGTTAGGAT 59.678 47.826 0.00 0.00 0.00 3.24
1 2 2.693591 CCTTAGATCGGCAGTGTTAGGA 59.306 50.000 0.00 0.00 0.00 2.94
2 3 2.224066 CCCTTAGATCGGCAGTGTTAGG 60.224 54.545 0.00 0.00 0.00 2.69
3 4 2.693591 TCCCTTAGATCGGCAGTGTTAG 59.306 50.000 0.00 0.00 0.00 2.34
4 5 2.742348 TCCCTTAGATCGGCAGTGTTA 58.258 47.619 0.00 0.00 0.00 2.41
5 6 1.568504 TCCCTTAGATCGGCAGTGTT 58.431 50.000 0.00 0.00 0.00 3.32
6 7 1.689273 GATCCCTTAGATCGGCAGTGT 59.311 52.381 0.00 0.00 42.06 3.55
7 8 2.447244 GATCCCTTAGATCGGCAGTG 57.553 55.000 0.00 0.00 42.06 3.66
14 15 6.826231 TCATGTCTCTATCGATCCCTTAGATC 59.174 42.308 0.00 0.00 46.90 2.75
15 16 6.726379 TCATGTCTCTATCGATCCCTTAGAT 58.274 40.000 0.00 0.00 38.17 1.98
16 17 6.128138 TCATGTCTCTATCGATCCCTTAGA 57.872 41.667 0.00 0.00 0.00 2.10
17 18 7.403312 AATCATGTCTCTATCGATCCCTTAG 57.597 40.000 0.00 0.00 0.00 2.18
18 19 6.378564 GGAATCATGTCTCTATCGATCCCTTA 59.621 42.308 0.00 0.00 0.00 2.69
19 20 5.186797 GGAATCATGTCTCTATCGATCCCTT 59.813 44.000 0.00 0.00 0.00 3.95
20 21 4.709397 GGAATCATGTCTCTATCGATCCCT 59.291 45.833 0.00 0.00 0.00 4.20
21 22 4.464244 TGGAATCATGTCTCTATCGATCCC 59.536 45.833 0.00 0.00 0.00 3.85
22 23 5.651387 TGGAATCATGTCTCTATCGATCC 57.349 43.478 0.00 0.00 0.00 3.36
38 39 3.876320 GGCTTCTCAGAGTTGATGGAATC 59.124 47.826 0.00 0.00 45.83 2.52
39 40 3.681034 CGGCTTCTCAGAGTTGATGGAAT 60.681 47.826 0.00 0.00 31.68 3.01
40 41 2.354103 CGGCTTCTCAGAGTTGATGGAA 60.354 50.000 0.00 0.00 31.68 3.53
41 42 1.205655 CGGCTTCTCAGAGTTGATGGA 59.794 52.381 0.00 0.00 31.68 3.41
42 43 1.649664 CGGCTTCTCAGAGTTGATGG 58.350 55.000 0.00 0.00 31.68 3.51
43 44 1.005340 GCGGCTTCTCAGAGTTGATG 58.995 55.000 0.00 0.00 31.68 3.07
44 45 0.107945 GGCGGCTTCTCAGAGTTGAT 60.108 55.000 0.00 0.00 31.68 2.57
45 46 1.293498 GGCGGCTTCTCAGAGTTGA 59.707 57.895 0.00 0.00 0.00 3.18
46 47 0.392193 ATGGCGGCTTCTCAGAGTTG 60.392 55.000 11.43 0.00 0.00 3.16
47 48 0.392193 CATGGCGGCTTCTCAGAGTT 60.392 55.000 11.43 0.00 0.00 3.01
48 49 1.220206 CATGGCGGCTTCTCAGAGT 59.780 57.895 11.43 0.00 0.00 3.24
49 50 0.107993 TTCATGGCGGCTTCTCAGAG 60.108 55.000 11.43 0.00 0.00 3.35
50 51 0.107993 CTTCATGGCGGCTTCTCAGA 60.108 55.000 11.43 0.00 0.00 3.27
51 52 0.107993 TCTTCATGGCGGCTTCTCAG 60.108 55.000 11.43 0.00 0.00 3.35
52 53 0.107993 CTCTTCATGGCGGCTTCTCA 60.108 55.000 11.43 0.00 0.00 3.27
53 54 1.435408 GCTCTTCATGGCGGCTTCTC 61.435 60.000 11.43 0.00 0.00 2.87
54 55 1.451028 GCTCTTCATGGCGGCTTCT 60.451 57.895 11.43 0.00 0.00 2.85
55 56 1.746615 TGCTCTTCATGGCGGCTTC 60.747 57.895 11.43 0.00 0.00 3.86
56 57 2.042831 GTGCTCTTCATGGCGGCTT 61.043 57.895 11.43 0.00 0.00 4.35
57 58 2.437359 GTGCTCTTCATGGCGGCT 60.437 61.111 11.43 0.00 0.00 5.52
58 59 3.512516 GGTGCTCTTCATGGCGGC 61.513 66.667 0.00 0.00 0.00 6.53
59 60 3.197790 CGGTGCTCTTCATGGCGG 61.198 66.667 0.00 0.00 0.00 6.13
60 61 3.869272 GCGGTGCTCTTCATGGCG 61.869 66.667 0.00 0.00 0.00 5.69
61 62 3.512516 GGCGGTGCTCTTCATGGC 61.513 66.667 0.00 0.00 0.00 4.40
62 63 3.197790 CGGCGGTGCTCTTCATGG 61.198 66.667 0.00 0.00 0.00 3.66
63 64 3.197790 CCGGCGGTGCTCTTCATG 61.198 66.667 19.97 0.00 0.00 3.07
64 65 3.706373 ACCGGCGGTGCTCTTCAT 61.706 61.111 33.71 1.44 32.98 2.57
73 74 2.282674 TACTCTGACACCGGCGGT 60.283 61.111 28.83 28.83 35.62 5.68
74 75 1.994507 CTCTACTCTGACACCGGCGG 61.995 65.000 27.06 27.06 0.00 6.13
75 76 1.306642 ACTCTACTCTGACACCGGCG 61.307 60.000 0.00 0.00 0.00 6.46
76 77 0.889306 AACTCTACTCTGACACCGGC 59.111 55.000 0.00 0.00 0.00 6.13
77 78 2.160205 TCAACTCTACTCTGACACCGG 58.840 52.381 0.00 0.00 0.00 5.28
78 79 3.763902 CATCAACTCTACTCTGACACCG 58.236 50.000 0.00 0.00 0.00 4.94
79 80 3.056536 TGCATCAACTCTACTCTGACACC 60.057 47.826 0.00 0.00 0.00 4.16
80 81 4.172505 CTGCATCAACTCTACTCTGACAC 58.827 47.826 0.00 0.00 0.00 3.67
81 82 3.829026 ACTGCATCAACTCTACTCTGACA 59.171 43.478 0.00 0.00 0.00 3.58
82 83 4.448537 ACTGCATCAACTCTACTCTGAC 57.551 45.455 0.00 0.00 0.00 3.51
83 84 5.474578 AAACTGCATCAACTCTACTCTGA 57.525 39.130 0.00 0.00 0.00 3.27
84 85 7.253917 CGAATAAACTGCATCAACTCTACTCTG 60.254 40.741 0.00 0.00 0.00 3.35
85 86 6.754209 CGAATAAACTGCATCAACTCTACTCT 59.246 38.462 0.00 0.00 0.00 3.24
86 87 6.531948 ACGAATAAACTGCATCAACTCTACTC 59.468 38.462 0.00 0.00 0.00 2.59
87 88 6.398918 ACGAATAAACTGCATCAACTCTACT 58.601 36.000 0.00 0.00 0.00 2.57
88 89 6.237861 GGACGAATAAACTGCATCAACTCTAC 60.238 42.308 0.00 0.00 0.00 2.59
89 90 5.810587 GGACGAATAAACTGCATCAACTCTA 59.189 40.000 0.00 0.00 0.00 2.43
90 91 4.631813 GGACGAATAAACTGCATCAACTCT 59.368 41.667 0.00 0.00 0.00 3.24
91 92 4.492570 CGGACGAATAAACTGCATCAACTC 60.493 45.833 0.00 0.00 0.00 3.01
92 93 3.370978 CGGACGAATAAACTGCATCAACT 59.629 43.478 0.00 0.00 0.00 3.16
93 94 3.485216 CCGGACGAATAAACTGCATCAAC 60.485 47.826 0.00 0.00 0.00 3.18
94 95 2.675844 CCGGACGAATAAACTGCATCAA 59.324 45.455 0.00 0.00 0.00 2.57
95 96 2.276201 CCGGACGAATAAACTGCATCA 58.724 47.619 0.00 0.00 0.00 3.07
96 97 1.597663 CCCGGACGAATAAACTGCATC 59.402 52.381 0.73 0.00 0.00 3.91
97 98 1.663695 CCCGGACGAATAAACTGCAT 58.336 50.000 0.73 0.00 0.00 3.96
98 99 1.022451 GCCCGGACGAATAAACTGCA 61.022 55.000 0.73 0.00 0.00 4.41
99 100 1.719709 GCCCGGACGAATAAACTGC 59.280 57.895 0.73 0.00 0.00 4.40
100 101 2.003672 CGCCCGGACGAATAAACTG 58.996 57.895 3.12 0.00 34.06 3.16
101 102 1.812507 GCGCCCGGACGAATAAACT 60.813 57.895 16.59 0.00 34.06 2.66
102 103 2.705220 GCGCCCGGACGAATAAAC 59.295 61.111 16.59 0.00 34.06 2.01
103 104 2.512057 GGCGCCCGGACGAATAAA 60.512 61.111 16.59 0.00 34.06 1.40
119 120 2.191786 TATTGTGGTGGTGGGAGCGG 62.192 60.000 0.00 0.00 0.00 5.52
120 121 0.322098 TTATTGTGGTGGTGGGAGCG 60.322 55.000 0.00 0.00 0.00 5.03
121 122 1.173913 GTTATTGTGGTGGTGGGAGC 58.826 55.000 0.00 0.00 0.00 4.70
122 123 1.448985 CGTTATTGTGGTGGTGGGAG 58.551 55.000 0.00 0.00 0.00 4.30
123 124 0.606944 GCGTTATTGTGGTGGTGGGA 60.607 55.000 0.00 0.00 0.00 4.37
124 125 0.891449 TGCGTTATTGTGGTGGTGGG 60.891 55.000 0.00 0.00 0.00 4.61
125 126 0.239879 GTGCGTTATTGTGGTGGTGG 59.760 55.000 0.00 0.00 0.00 4.61
126 127 0.239879 GGTGCGTTATTGTGGTGGTG 59.760 55.000 0.00 0.00 0.00 4.17
127 128 0.179015 TGGTGCGTTATTGTGGTGGT 60.179 50.000 0.00 0.00 0.00 4.16
128 129 1.135431 CATGGTGCGTTATTGTGGTGG 60.135 52.381 0.00 0.00 0.00 4.61
129 130 1.809547 TCATGGTGCGTTATTGTGGTG 59.190 47.619 0.00 0.00 0.00 4.17
130 131 1.810151 GTCATGGTGCGTTATTGTGGT 59.190 47.619 0.00 0.00 0.00 4.16
131 132 1.132262 GGTCATGGTGCGTTATTGTGG 59.868 52.381 0.00 0.00 0.00 4.17
132 133 2.083774 AGGTCATGGTGCGTTATTGTG 58.916 47.619 0.00 0.00 0.00 3.33
133 134 2.489938 AGGTCATGGTGCGTTATTGT 57.510 45.000 0.00 0.00 0.00 2.71
134 135 3.266636 TGTAGGTCATGGTGCGTTATTG 58.733 45.455 0.00 0.00 0.00 1.90
135 136 3.620427 TGTAGGTCATGGTGCGTTATT 57.380 42.857 0.00 0.00 0.00 1.40
136 137 3.620427 TTGTAGGTCATGGTGCGTTAT 57.380 42.857 0.00 0.00 0.00 1.89
137 138 3.404224 TTTGTAGGTCATGGTGCGTTA 57.596 42.857 0.00 0.00 0.00 3.18
138 139 2.264005 TTTGTAGGTCATGGTGCGTT 57.736 45.000 0.00 0.00 0.00 4.84
139 140 2.356135 GATTTGTAGGTCATGGTGCGT 58.644 47.619 0.00 0.00 0.00 5.24
140 141 1.670811 GGATTTGTAGGTCATGGTGCG 59.329 52.381 0.00 0.00 0.00 5.34
141 142 2.722094 TGGATTTGTAGGTCATGGTGC 58.278 47.619 0.00 0.00 0.00 5.01
142 143 5.469479 GTTTTGGATTTGTAGGTCATGGTG 58.531 41.667 0.00 0.00 0.00 4.17
143 144 4.526650 GGTTTTGGATTTGTAGGTCATGGT 59.473 41.667 0.00 0.00 0.00 3.55
144 145 4.772100 AGGTTTTGGATTTGTAGGTCATGG 59.228 41.667 0.00 0.00 0.00 3.66
145 146 5.982890 AGGTTTTGGATTTGTAGGTCATG 57.017 39.130 0.00 0.00 0.00 3.07
146 147 7.238710 AGTTAGGTTTTGGATTTGTAGGTCAT 58.761 34.615 0.00 0.00 0.00 3.06
147 148 6.607019 AGTTAGGTTTTGGATTTGTAGGTCA 58.393 36.000 0.00 0.00 0.00 4.02
148 149 7.120285 GGTAGTTAGGTTTTGGATTTGTAGGTC 59.880 40.741 0.00 0.00 0.00 3.85
149 150 6.944290 GGTAGTTAGGTTTTGGATTTGTAGGT 59.056 38.462 0.00 0.00 0.00 3.08
150 151 6.093082 CGGTAGTTAGGTTTTGGATTTGTAGG 59.907 42.308 0.00 0.00 0.00 3.18
151 152 6.875195 TCGGTAGTTAGGTTTTGGATTTGTAG 59.125 38.462 0.00 0.00 0.00 2.74
152 153 6.767456 TCGGTAGTTAGGTTTTGGATTTGTA 58.233 36.000 0.00 0.00 0.00 2.41
153 154 5.623169 TCGGTAGTTAGGTTTTGGATTTGT 58.377 37.500 0.00 0.00 0.00 2.83
154 155 5.391629 GCTCGGTAGTTAGGTTTTGGATTTG 60.392 44.000 0.00 0.00 0.00 2.32
155 156 4.698780 GCTCGGTAGTTAGGTTTTGGATTT 59.301 41.667 0.00 0.00 0.00 2.17
156 157 4.259356 GCTCGGTAGTTAGGTTTTGGATT 58.741 43.478 0.00 0.00 0.00 3.01
157 158 3.677976 CGCTCGGTAGTTAGGTTTTGGAT 60.678 47.826 0.00 0.00 0.00 3.41
158 159 2.353011 CGCTCGGTAGTTAGGTTTTGGA 60.353 50.000 0.00 0.00 0.00 3.53
159 160 1.997606 CGCTCGGTAGTTAGGTTTTGG 59.002 52.381 0.00 0.00 0.00 3.28
160 161 1.997606 CCGCTCGGTAGTTAGGTTTTG 59.002 52.381 0.00 0.00 0.00 2.44
161 162 1.895131 TCCGCTCGGTAGTTAGGTTTT 59.105 47.619 8.28 0.00 36.47 2.43
162 163 1.475682 CTCCGCTCGGTAGTTAGGTTT 59.524 52.381 8.28 0.00 36.47 3.27
163 164 1.101331 CTCCGCTCGGTAGTTAGGTT 58.899 55.000 8.28 0.00 36.47 3.50
164 165 0.750911 CCTCCGCTCGGTAGTTAGGT 60.751 60.000 8.28 0.00 36.47 3.08
165 166 0.465097 TCCTCCGCTCGGTAGTTAGG 60.465 60.000 8.28 7.36 36.47 2.69
166 167 1.065251 GTTCCTCCGCTCGGTAGTTAG 59.935 57.143 8.28 0.00 36.47 2.34
167 168 1.098050 GTTCCTCCGCTCGGTAGTTA 58.902 55.000 8.28 0.00 36.47 2.24
168 169 1.888736 GTTCCTCCGCTCGGTAGTT 59.111 57.895 8.28 0.00 36.47 2.24
169 170 2.404995 CGTTCCTCCGCTCGGTAGT 61.405 63.158 8.28 0.00 36.47 2.73
170 171 2.408022 CGTTCCTCCGCTCGGTAG 59.592 66.667 8.28 4.78 36.47 3.18
171 172 3.136123 CCGTTCCTCCGCTCGGTA 61.136 66.667 8.28 0.00 38.45 4.02
175 176 4.144703 GACCCCGTTCCTCCGCTC 62.145 72.222 0.00 0.00 0.00 5.03
189 190 0.106619 TAAGAGAGAGAGGGCGGACC 60.107 60.000 0.00 0.00 40.67 4.46
190 191 1.026584 GTAAGAGAGAGAGGGCGGAC 58.973 60.000 0.00 0.00 0.00 4.79
191 192 0.106619 GGTAAGAGAGAGAGGGCGGA 60.107 60.000 0.00 0.00 0.00 5.54
192 193 1.448922 CGGTAAGAGAGAGAGGGCGG 61.449 65.000 0.00 0.00 0.00 6.13
193 194 0.748729 ACGGTAAGAGAGAGAGGGCG 60.749 60.000 0.00 0.00 0.00 6.13
194 195 1.026584 GACGGTAAGAGAGAGAGGGC 58.973 60.000 0.00 0.00 0.00 5.19
195 196 1.301423 CGACGGTAAGAGAGAGAGGG 58.699 60.000 0.00 0.00 0.00 4.30
196 197 1.134461 TCCGACGGTAAGAGAGAGAGG 60.134 57.143 14.79 0.00 0.00 3.69
197 198 2.206750 CTCCGACGGTAAGAGAGAGAG 58.793 57.143 14.79 0.00 0.00 3.20
198 199 1.743091 GCTCCGACGGTAAGAGAGAGA 60.743 57.143 14.79 0.00 0.00 3.10
199 200 0.658897 GCTCCGACGGTAAGAGAGAG 59.341 60.000 14.79 1.97 0.00 3.20
200 201 0.035725 TGCTCCGACGGTAAGAGAGA 60.036 55.000 14.79 0.00 0.00 3.10
201 202 0.378962 CTGCTCCGACGGTAAGAGAG 59.621 60.000 14.79 3.56 0.00 3.20
202 203 0.322277 ACTGCTCCGACGGTAAGAGA 60.322 55.000 14.79 0.00 0.00 3.10
203 204 0.179161 CACTGCTCCGACGGTAAGAG 60.179 60.000 14.79 4.76 0.00 2.85
204 205 0.607217 TCACTGCTCCGACGGTAAGA 60.607 55.000 14.79 2.21 0.00 2.10
205 206 0.456221 ATCACTGCTCCGACGGTAAG 59.544 55.000 14.79 12.10 0.00 2.34
206 207 0.454600 GATCACTGCTCCGACGGTAA 59.545 55.000 14.79 0.00 0.00 2.85
207 208 1.712018 CGATCACTGCTCCGACGGTA 61.712 60.000 14.79 0.00 0.00 4.02
208 209 2.885861 GATCACTGCTCCGACGGT 59.114 61.111 14.79 0.00 0.00 4.83
209 210 2.266376 TTCGATCACTGCTCCGACGG 62.266 60.000 7.84 7.84 0.00 4.79
210 211 0.863538 CTTCGATCACTGCTCCGACG 60.864 60.000 0.00 0.00 0.00 5.12
211 212 0.526524 CCTTCGATCACTGCTCCGAC 60.527 60.000 0.00 0.00 0.00 4.79
212 213 1.667154 CCCTTCGATCACTGCTCCGA 61.667 60.000 0.00 0.00 0.00 4.55
213 214 1.227089 CCCTTCGATCACTGCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
214 215 0.103937 CTCCCTTCGATCACTGCTCC 59.896 60.000 0.00 0.00 0.00 4.70
215 216 1.066908 CTCTCCCTTCGATCACTGCTC 59.933 57.143 0.00 0.00 0.00 4.26
216 217 1.110442 CTCTCCCTTCGATCACTGCT 58.890 55.000 0.00 0.00 0.00 4.24
217 218 0.103937 CCTCTCCCTTCGATCACTGC 59.896 60.000 0.00 0.00 0.00 4.40
218 219 0.749649 CCCTCTCCCTTCGATCACTG 59.250 60.000 0.00 0.00 0.00 3.66
219 220 0.397816 CCCCTCTCCCTTCGATCACT 60.398 60.000 0.00 0.00 0.00 3.41
220 221 2.034048 GCCCCTCTCCCTTCGATCAC 62.034 65.000 0.00 0.00 0.00 3.06
221 222 1.762460 GCCCCTCTCCCTTCGATCA 60.762 63.158 0.00 0.00 0.00 2.92
222 223 2.512355 GGCCCCTCTCCCTTCGATC 61.512 68.421 0.00 0.00 0.00 3.69
223 224 2.446802 GGCCCCTCTCCCTTCGAT 60.447 66.667 0.00 0.00 0.00 3.59
224 225 4.798682 GGGCCCCTCTCCCTTCGA 62.799 72.222 12.23 0.00 40.66 3.71
226 227 3.093172 CTGGGCCCCTCTCCCTTC 61.093 72.222 22.27 0.00 44.23 3.46
243 244 4.899239 CTCCACCGGATGAGGCGC 62.899 72.222 9.46 0.00 33.69 6.53
244 245 2.427540 GATCTCCACCGGATGAGGCG 62.428 65.000 9.46 0.00 33.69 5.52
245 246 1.369321 GATCTCCACCGGATGAGGC 59.631 63.158 9.46 5.81 33.69 4.70
246 247 1.662608 CGATCTCCACCGGATGAGG 59.337 63.158 9.46 4.34 37.30 3.86
252 253 1.327690 TTTCCTCCGATCTCCACCGG 61.328 60.000 0.00 0.00 46.57 5.28
253 254 0.103208 CTTTCCTCCGATCTCCACCG 59.897 60.000 0.00 0.00 0.00 4.94
254 255 1.410882 CTCTTTCCTCCGATCTCCACC 59.589 57.143 0.00 0.00 0.00 4.61
255 256 2.379972 TCTCTTTCCTCCGATCTCCAC 58.620 52.381 0.00 0.00 0.00 4.02
256 257 2.828661 TCTCTTTCCTCCGATCTCCA 57.171 50.000 0.00 0.00 0.00 3.86
257 258 2.227865 CGATCTCTTTCCTCCGATCTCC 59.772 54.545 0.00 0.00 32.22 3.71
258 259 2.351350 GCGATCTCTTTCCTCCGATCTC 60.351 54.545 0.00 0.00 32.22 2.75
259 260 1.611491 GCGATCTCTTTCCTCCGATCT 59.389 52.381 0.00 0.00 32.22 2.75
260 261 1.336424 GGCGATCTCTTTCCTCCGATC 60.336 57.143 0.00 0.00 0.00 3.69
261 262 0.676736 GGCGATCTCTTTCCTCCGAT 59.323 55.000 0.00 0.00 0.00 4.18
262 263 1.392710 GGGCGATCTCTTTCCTCCGA 61.393 60.000 0.00 0.00 0.00 4.55
263 264 1.068250 GGGCGATCTCTTTCCTCCG 59.932 63.158 0.00 0.00 0.00 4.63
264 265 1.448069 GGGGCGATCTCTTTCCTCC 59.552 63.158 0.00 0.00 0.00 4.30
265 266 1.448069 GGGGGCGATCTCTTTCCTC 59.552 63.158 0.00 0.00 0.00 3.71
266 267 3.648694 GGGGGCGATCTCTTTCCT 58.351 61.111 0.00 0.00 0.00 3.36
281 282 3.854669 CAGCCAGGCGACTAGGGG 61.855 72.222 5.55 0.00 40.21 4.79
282 283 3.854669 CCAGCCAGGCGACTAGGG 61.855 72.222 5.55 0.00 40.21 3.53
283 284 1.739338 CTACCAGCCAGGCGACTAGG 61.739 65.000 5.55 7.06 43.14 3.02
284 285 1.736586 CTACCAGCCAGGCGACTAG 59.263 63.158 5.55 1.88 43.14 2.57
285 286 2.423898 GCTACCAGCCAGGCGACTA 61.424 63.158 5.55 0.00 43.14 2.59
286 287 3.775654 GCTACCAGCCAGGCGACT 61.776 66.667 5.55 0.00 43.14 4.18
291 292 4.473520 CCACCGCTACCAGCCAGG 62.474 72.222 0.00 0.00 38.18 4.45
294 295 3.447025 CTAGCCACCGCTACCAGCC 62.447 68.421 0.00 0.00 46.08 4.85
295 296 2.107141 CTAGCCACCGCTACCAGC 59.893 66.667 0.00 0.00 46.08 4.85
296 297 2.797278 CCCTAGCCACCGCTACCAG 61.797 68.421 0.00 0.00 46.08 4.00
297 298 2.227494 TACCCTAGCCACCGCTACCA 62.227 60.000 0.00 0.00 46.08 3.25
298 299 1.456331 TACCCTAGCCACCGCTACC 60.456 63.158 0.00 0.00 46.08 3.18
299 300 0.466922 TCTACCCTAGCCACCGCTAC 60.467 60.000 0.00 0.00 46.08 3.58
300 301 0.259647 TTCTACCCTAGCCACCGCTA 59.740 55.000 0.00 0.00 46.08 4.26
302 303 0.251073 TTTTCTACCCTAGCCACCGC 59.749 55.000 0.00 0.00 0.00 5.68
303 304 2.773993 TTTTTCTACCCTAGCCACCG 57.226 50.000 0.00 0.00 0.00 4.94
319 320 2.546368 TGACTGCAGCGTAATCGTTTTT 59.454 40.909 15.27 0.00 39.49 1.94
320 321 2.139917 TGACTGCAGCGTAATCGTTTT 58.860 42.857 15.27 0.00 39.49 2.43
321 322 1.790755 TGACTGCAGCGTAATCGTTT 58.209 45.000 15.27 0.00 39.49 3.60
322 323 1.790755 TTGACTGCAGCGTAATCGTT 58.209 45.000 15.27 0.00 39.49 3.85
323 324 1.660607 CATTGACTGCAGCGTAATCGT 59.339 47.619 15.27 0.00 39.49 3.73
324 325 1.004610 CCATTGACTGCAGCGTAATCG 60.005 52.381 15.27 1.15 40.37 3.34
325 326 2.279741 TCCATTGACTGCAGCGTAATC 58.720 47.619 15.27 3.72 0.00 1.75
326 327 2.401583 TCCATTGACTGCAGCGTAAT 57.598 45.000 15.27 9.17 0.00 1.89
327 328 2.177394 TTCCATTGACTGCAGCGTAA 57.823 45.000 15.27 7.00 0.00 3.18
328 329 2.177394 TTTCCATTGACTGCAGCGTA 57.823 45.000 15.27 0.00 0.00 4.42
329 330 1.001378 GTTTTCCATTGACTGCAGCGT 60.001 47.619 15.27 0.00 0.00 5.07
330 331 1.001487 TGTTTTCCATTGACTGCAGCG 60.001 47.619 15.27 0.00 0.00 5.18
331 332 2.798976 TGTTTTCCATTGACTGCAGC 57.201 45.000 15.27 7.45 0.00 5.25
332 333 4.293415 GTCTTGTTTTCCATTGACTGCAG 58.707 43.478 13.48 13.48 0.00 4.41
333 334 3.243035 CGTCTTGTTTTCCATTGACTGCA 60.243 43.478 0.00 0.00 0.00 4.41
334 335 3.243068 ACGTCTTGTTTTCCATTGACTGC 60.243 43.478 0.00 0.00 0.00 4.40
335 336 4.552166 ACGTCTTGTTTTCCATTGACTG 57.448 40.909 0.00 0.00 0.00 3.51
336 337 4.881850 AGAACGTCTTGTTTTCCATTGACT 59.118 37.500 0.00 0.00 42.09 3.41
337 338 5.169836 AGAACGTCTTGTTTTCCATTGAC 57.830 39.130 0.00 0.00 42.09 3.18
338 339 5.418310 GAGAACGTCTTGTTTTCCATTGA 57.582 39.130 0.00 0.00 42.09 2.57
344 345 1.070108 GCCGGAGAACGTCTTGTTTTC 60.070 52.381 5.05 0.00 42.09 2.29
345 346 0.942252 GCCGGAGAACGTCTTGTTTT 59.058 50.000 5.05 0.00 42.09 2.43
346 347 0.106149 AGCCGGAGAACGTCTTGTTT 59.894 50.000 5.05 0.00 42.09 2.83
347 348 0.600255 CAGCCGGAGAACGTCTTGTT 60.600 55.000 5.05 0.00 45.61 2.83
348 349 1.006102 CAGCCGGAGAACGTCTTGT 60.006 57.895 5.05 0.00 42.24 3.16
349 350 2.383527 GCAGCCGGAGAACGTCTTG 61.384 63.158 5.05 0.00 42.24 3.02
350 351 1.248785 TAGCAGCCGGAGAACGTCTT 61.249 55.000 5.05 0.00 42.24 3.01
351 352 1.658686 CTAGCAGCCGGAGAACGTCT 61.659 60.000 5.05 0.00 42.24 4.18
352 353 1.226717 CTAGCAGCCGGAGAACGTC 60.227 63.158 5.05 0.00 42.24 4.34
353 354 1.935327 GACTAGCAGCCGGAGAACGT 61.935 60.000 5.05 0.00 42.24 3.99
354 355 1.226717 GACTAGCAGCCGGAGAACG 60.227 63.158 5.05 0.00 43.80 3.95
355 356 0.533032 AAGACTAGCAGCCGGAGAAC 59.467 55.000 5.05 0.00 0.00 3.01
356 357 0.532573 CAAGACTAGCAGCCGGAGAA 59.467 55.000 5.05 0.00 0.00 2.87
357 358 0.612174 ACAAGACTAGCAGCCGGAGA 60.612 55.000 5.05 0.00 0.00 3.71
358 359 0.179124 GACAAGACTAGCAGCCGGAG 60.179 60.000 5.05 0.00 0.00 4.63
359 360 1.605058 GGACAAGACTAGCAGCCGGA 61.605 60.000 5.05 0.00 0.00 5.14
360 361 1.153549 GGACAAGACTAGCAGCCGG 60.154 63.158 0.00 0.00 0.00 6.13
361 362 0.247736 AAGGACAAGACTAGCAGCCG 59.752 55.000 0.00 0.00 0.00 5.52
362 363 1.552792 AGAAGGACAAGACTAGCAGCC 59.447 52.381 0.00 0.00 0.00 4.85
363 364 3.326836 AAGAAGGACAAGACTAGCAGC 57.673 47.619 0.00 0.00 0.00 5.25
364 365 5.393678 GGTCTAAGAAGGACAAGACTAGCAG 60.394 48.000 0.00 0.00 38.69 4.24
365 366 4.463186 GGTCTAAGAAGGACAAGACTAGCA 59.537 45.833 0.00 0.00 38.69 3.49
366 367 4.463186 TGGTCTAAGAAGGACAAGACTAGC 59.537 45.833 0.00 0.00 38.69 3.42
367 368 6.434652 TCTTGGTCTAAGAAGGACAAGACTAG 59.565 42.308 0.00 0.00 42.31 2.57
368 369 6.312529 TCTTGGTCTAAGAAGGACAAGACTA 58.687 40.000 0.00 0.00 42.31 2.59
369 370 5.148502 TCTTGGTCTAAGAAGGACAAGACT 58.851 41.667 0.00 0.00 42.31 3.24
370 371 5.470047 TCTTGGTCTAAGAAGGACAAGAC 57.530 43.478 0.00 0.00 42.31 3.01
371 372 4.528596 CCTCTTGGTCTAAGAAGGACAAGA 59.471 45.833 0.00 0.00 44.47 3.02
372 373 4.284746 ACCTCTTGGTCTAAGAAGGACAAG 59.715 45.833 16.15 0.00 44.78 3.16
373 374 4.040461 CACCTCTTGGTCTAAGAAGGACAA 59.960 45.833 16.15 0.00 46.60 3.18
374 375 3.578716 CACCTCTTGGTCTAAGAAGGACA 59.421 47.826 16.15 0.00 46.60 4.02
431 432 1.337447 ACGTACATATATGTGGCGCCC 60.337 52.381 28.51 16.24 41.89 6.13
437 438 3.176708 GCGGCCTACGTACATATATGTG 58.823 50.000 25.48 13.83 46.52 3.21
438 439 2.159476 CGCGGCCTACGTACATATATGT 60.159 50.000 21.57 21.57 46.52 2.29
439 440 2.159476 ACGCGGCCTACGTACATATATG 60.159 50.000 17.89 11.29 46.52 1.78
440 441 2.086869 ACGCGGCCTACGTACATATAT 58.913 47.619 17.89 0.00 46.52 0.86
458 459 1.015085 TTTTCACCCACGCCGATACG 61.015 55.000 0.00 0.00 39.50 3.06
494 495 9.707957 ATCTCTCTATATCCCTTTCATCGTAAT 57.292 33.333 0.00 0.00 0.00 1.89
496 497 8.553153 AGATCTCTCTATATCCCTTTCATCGTA 58.447 37.037 0.00 0.00 0.00 3.43
497 498 7.410174 AGATCTCTCTATATCCCTTTCATCGT 58.590 38.462 0.00 0.00 0.00 3.73
498 499 7.555914 TGAGATCTCTCTATATCCCTTTCATCG 59.444 40.741 22.95 0.00 43.25 3.84
499 500 8.821686 TGAGATCTCTCTATATCCCTTTCATC 57.178 38.462 22.95 0.00 43.25 2.92
500 501 7.342799 GCTGAGATCTCTCTATATCCCTTTCAT 59.657 40.741 22.95 0.00 43.25 2.57
501 502 6.663093 GCTGAGATCTCTCTATATCCCTTTCA 59.337 42.308 22.95 0.00 43.25 2.69
502 503 6.096846 GGCTGAGATCTCTCTATATCCCTTTC 59.903 46.154 22.95 0.00 43.25 2.62
503 504 5.957774 GGCTGAGATCTCTCTATATCCCTTT 59.042 44.000 22.95 0.00 43.25 3.11
509 511 5.172687 TGACGGCTGAGATCTCTCTATAT 57.827 43.478 22.95 5.13 43.25 0.86
586 589 9.562583 TTCAGTTTAAACTCAATTGTGTGTTAC 57.437 29.630 18.00 9.81 39.84 2.50
587 590 9.781834 CTTCAGTTTAAACTCAATTGTGTGTTA 57.218 29.630 18.00 10.94 39.84 2.41
608 611 5.312079 ACTGTCCTTGGAAAAGATCTTCAG 58.688 41.667 8.78 10.45 0.00 3.02
625 628 4.793353 GCACGTCTATCTATCCAACTGTCC 60.793 50.000 0.00 0.00 0.00 4.02
632 635 5.791336 AATCTTGCACGTCTATCTATCCA 57.209 39.130 0.00 0.00 0.00 3.41
665 675 6.209986 TGGAAAAGATCTTACACGTCTCCTTA 59.790 38.462 8.75 0.00 0.00 2.69
666 676 5.011738 TGGAAAAGATCTTACACGTCTCCTT 59.988 40.000 8.75 0.00 0.00 3.36
724 734 1.153784 CGCATGCATGGGTGGAAAC 60.154 57.895 30.01 10.50 36.16 2.78
737 755 2.031682 GGAAAGCCTATAACTGCGCATG 60.032 50.000 12.24 8.04 0.00 4.06
773 791 2.807967 TCTGTTCAAAGTCTGCGGAATG 59.192 45.455 0.00 0.00 0.00 2.67
843 861 7.201821 GGAAAGAGATCTTTGTTCTTGTTGGAA 60.202 37.037 12.38 0.00 45.37 3.53
844 862 6.263168 GGAAAGAGATCTTTGTTCTTGTTGGA 59.737 38.462 12.38 0.00 45.37 3.53
878 935 1.349067 ATAGGAACGCCCCTATGGTC 58.651 55.000 13.53 0.00 45.30 4.02
883 940 2.708037 ATGGTATAGGAACGCCCCTA 57.292 50.000 5.95 5.95 42.51 3.53
917 984 1.153429 GGGATGCCACAGTCGGTAC 60.153 63.158 0.00 0.00 0.00 3.34
949 1041 6.074516 GGAGATCGATCTATCTTCGTCTATCG 60.075 46.154 27.36 0.00 36.33 2.92
957 1049 3.130340 GCAGGGGAGATCGATCTATCTTC 59.870 52.174 27.36 14.63 36.33 2.87
1172 1280 2.812619 GGGAAGAGCTCCGGGATGG 61.813 68.421 10.93 0.00 46.51 3.51
1183 1291 2.430610 CCTCCAGCTCCGGGAAGAG 61.431 68.421 0.00 1.13 33.11 2.85
1237 1345 0.677098 TCGAGGACCTTGACCGAGAG 60.677 60.000 7.42 0.00 0.00 3.20
1241 1349 2.178521 CGTCGAGGACCTTGACCG 59.821 66.667 29.04 21.60 40.69 4.79
1284 1392 2.201921 TCGAGTTGAGGTAGCAGAGT 57.798 50.000 0.00 0.00 0.00 3.24
1288 1396 2.288825 CCTTGTTCGAGTTGAGGTAGCA 60.289 50.000 0.00 0.00 0.00 3.49
1289 1397 2.338500 CCTTGTTCGAGTTGAGGTAGC 58.662 52.381 0.00 0.00 0.00 3.58
1318 1426 3.308402 CGCCTCCAATTATACCCCATGAT 60.308 47.826 0.00 0.00 0.00 2.45
1323 1431 0.608308 GCCGCCTCCAATTATACCCC 60.608 60.000 0.00 0.00 0.00 4.95
1326 1434 1.270147 ACGAGCCGCCTCCAATTATAC 60.270 52.381 0.00 0.00 34.49 1.47
1328 1436 0.532862 CACGAGCCGCCTCCAATTAT 60.533 55.000 0.00 0.00 34.49 1.28
1329 1437 1.153449 CACGAGCCGCCTCCAATTA 60.153 57.895 0.00 0.00 34.49 1.40
1330 1438 2.436646 CACGAGCCGCCTCCAATT 60.437 61.111 0.00 0.00 34.49 2.32
1348 1456 3.857854 GCACATGCGGCTCTCGTG 61.858 66.667 0.00 4.55 41.72 4.35
1350 1458 3.092192 CTTGCACATGCGGCTCTCG 62.092 63.158 10.82 0.00 45.83 4.04
1355 1463 3.818787 CTCCCTTGCACATGCGGC 61.819 66.667 3.13 3.13 45.83 6.53
1377 1485 1.920574 CTGCACGTGTAGAAATCGAGG 59.079 52.381 27.20 0.00 0.00 4.63
1446 1554 4.514577 CACCAGGAGCTACCGCCG 62.515 72.222 0.00 0.00 44.74 6.46
1590 1698 1.079819 CTGGACGTCGGACTGCATT 60.080 57.895 9.92 0.00 0.00 3.56
1591 1699 2.573869 CTGGACGTCGGACTGCAT 59.426 61.111 9.92 0.00 0.00 3.96
1592 1700 3.680786 CCTGGACGTCGGACTGCA 61.681 66.667 9.92 0.00 0.00 4.41
1658 1766 2.110006 GGAAGAGCTCCGGGATGC 59.890 66.667 10.93 4.03 33.37 3.91
1718 1826 0.954449 GACCGTGACCGAGACTCTGA 60.954 60.000 0.35 0.00 35.63 3.27
1802 1911 0.541392 CCACCGAGACCCAATGATCA 59.459 55.000 0.00 0.00 0.00 2.92
1898 2007 2.797156 CTGAACAAGAAGAGACACCGTG 59.203 50.000 0.00 0.00 0.00 4.94
1949 2064 1.598130 ACAAGACTGTTGCTCCGGC 60.598 57.895 0.00 0.00 39.26 6.13
2012 2127 2.485814 GGTCTTGGATCACTTTGACTGC 59.514 50.000 0.00 0.00 0.00 4.40
2021 2136 1.026718 CAAGCGGGGTCTTGGATCAC 61.027 60.000 0.00 0.00 39.68 3.06
2032 2147 0.953471 TCGAACAATCACAAGCGGGG 60.953 55.000 0.00 0.00 0.00 5.73
2045 2160 4.729227 TCAACTGCATATACCTCGAACA 57.271 40.909 0.00 0.00 0.00 3.18
2061 2176 7.390440 TGAACGATTTAATCTCACCAATCAACT 59.610 33.333 3.34 0.00 0.00 3.16
2062 2177 7.526608 TGAACGATTTAATCTCACCAATCAAC 58.473 34.615 3.34 0.00 0.00 3.18
2086 2201 2.632028 CCTCTCCCTATCCTGACACATG 59.368 54.545 0.00 0.00 0.00 3.21
2089 2204 1.044611 GCCTCTCCCTATCCTGACAC 58.955 60.000 0.00 0.00 0.00 3.67
2111 2235 4.033709 ACATGGCTAGTCCTATTCTGTGT 58.966 43.478 0.00 0.00 35.26 3.72
2164 2288 6.036470 GCCAACTAACCTATCTGCATTTTTC 58.964 40.000 0.00 0.00 0.00 2.29
2178 2302 0.605589 ACCGAAGCAGCCAACTAACC 60.606 55.000 0.00 0.00 0.00 2.85
2184 2308 1.066908 CAGAAAAACCGAAGCAGCCAA 59.933 47.619 0.00 0.00 0.00 4.52
2196 2320 7.175119 ACACTCTCTATTTTAGGGCAGAAAAAC 59.825 37.037 0.68 0.00 30.03 2.43
2255 2381 5.230306 CGATCGAGGAAATACTTGACAAGAC 59.770 44.000 21.95 7.22 33.85 3.01
2268 2394 3.671008 TTTGAGAACCGATCGAGGAAA 57.329 42.857 18.66 3.87 34.73 3.13
2276 2402 7.921786 TGAGACATTTATTTTGAGAACCGAT 57.078 32.000 0.00 0.00 0.00 4.18
2277 2403 7.444183 AGTTGAGACATTTATTTTGAGAACCGA 59.556 33.333 0.00 0.00 0.00 4.69
2278 2404 7.584987 AGTTGAGACATTTATTTTGAGAACCG 58.415 34.615 0.00 0.00 0.00 4.44
2279 2405 9.750125 AAAGTTGAGACATTTATTTTGAGAACC 57.250 29.630 0.00 0.00 0.00 3.62
2313 2439 8.657074 TGGATACTTATTCATCCGTTGTAAAG 57.343 34.615 0.00 0.00 43.18 1.85
2316 2442 6.649141 GCATGGATACTTATTCATCCGTTGTA 59.351 38.462 0.00 0.00 43.18 2.41
2325 2451 6.505044 GCATCATGCATGGATACTTATTCA 57.495 37.500 25.97 2.76 44.26 2.57
2340 2466 1.947456 TCTTCAGCAGATGCATCATGC 59.053 47.619 28.79 28.79 45.16 4.06
2341 2467 4.632538 TTTCTTCAGCAGATGCATCATG 57.367 40.909 27.81 21.30 45.16 3.07
2342 2468 4.705507 ACTTTTCTTCAGCAGATGCATCAT 59.294 37.500 27.81 11.07 45.16 2.45
2343 2469 4.077108 ACTTTTCTTCAGCAGATGCATCA 58.923 39.130 27.81 4.42 45.16 3.07
2344 2470 4.082895 ACACTTTTCTTCAGCAGATGCATC 60.083 41.667 19.37 19.37 45.16 3.91
2345 2471 3.825014 ACACTTTTCTTCAGCAGATGCAT 59.175 39.130 0.00 0.00 45.16 3.96
2346 2472 3.216800 ACACTTTTCTTCAGCAGATGCA 58.783 40.909 7.68 0.00 45.16 3.96
2347 2473 3.911661 ACACTTTTCTTCAGCAGATGC 57.088 42.857 0.00 0.00 42.49 3.91
2348 2474 6.145535 GGTTTACACTTTTCTTCAGCAGATG 58.854 40.000 0.00 0.00 0.00 2.90
2418 2544 6.859508 CGCATGTATTGATTTGCTGAATGTAT 59.140 34.615 0.00 0.00 32.97 2.29
2446 2572 9.640963 AGTGATCTTGTAGAGTTGTAATTACAC 57.359 33.333 17.85 12.66 35.64 2.90
2551 2677 6.479660 TCTTTTCATTTGCCTGATTGTCAAAC 59.520 34.615 0.00 0.00 33.24 2.93
2654 2780 7.012515 CACCATGCCGTAAATAATACACCTTAA 59.987 37.037 0.00 0.00 0.00 1.85
2671 2797 3.443045 GTGCCTTCCACCATGCCG 61.443 66.667 0.00 0.00 38.55 5.69
2724 2850 6.743110 ACTTGCCACAAACAAACAAAATTTT 58.257 28.000 0.00 0.00 0.00 1.82
2728 2854 6.861065 TTTACTTGCCACAAACAAACAAAA 57.139 29.167 0.00 0.00 0.00 2.44
2731 2857 5.724328 TGATTTACTTGCCACAAACAAACA 58.276 33.333 0.00 0.00 0.00 2.83
2732 2858 5.810074 ACTGATTTACTTGCCACAAACAAAC 59.190 36.000 0.00 0.00 0.00 2.93
2734 2860 5.590530 ACTGATTTACTTGCCACAAACAA 57.409 34.783 0.00 0.00 0.00 2.83
2735 2861 5.590530 AACTGATTTACTTGCCACAAACA 57.409 34.783 0.00 0.00 0.00 2.83
2762 2888 9.639563 TCATTGCATGTATCCCTTATTTTTCTA 57.360 29.630 0.00 0.00 0.00 2.10
2764 2890 9.252962 CTTCATTGCATGTATCCCTTATTTTTC 57.747 33.333 0.00 0.00 0.00 2.29
2774 2900 8.789825 AATATCTCTCTTCATTGCATGTATCC 57.210 34.615 0.00 0.00 0.00 2.59
2823 2949 8.855110 CAGAGAAAAGGTTAGCATCTCTCTATA 58.145 37.037 10.06 0.00 43.66 1.31
2845 2971 6.596309 AATTTTCTTTTTAGCCCTCCAGAG 57.404 37.500 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.