Multiple sequence alignment - TraesCS7B01G422200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G422200 chr7B 100.000 3092 0 0 1 3092 691457183 691460274 0.000000e+00 5710
1 TraesCS7B01G422200 chr7B 76.594 957 186 23 1052 1992 691197516 691196582 2.770000e-135 492
2 TraesCS7B01G422200 chr7B 76.640 869 165 19 1030 1882 691276790 691275944 2.190000e-121 446
3 TraesCS7B01G422200 chr7B 82.456 228 36 4 1892 2117 691275733 691275508 2.430000e-46 196
4 TraesCS7B01G422200 chr7A 90.652 1380 80 11 753 2114 699090586 699091934 0.000000e+00 1788
5 TraesCS7B01G422200 chr7A 86.780 590 35 16 132 718 699075159 699075708 4.380000e-173 617
6 TraesCS7B01G422200 chr7A 86.004 543 37 9 2466 2984 699094044 699094571 2.100000e-151 545
7 TraesCS7B01G422200 chr7A 91.860 258 17 1 2212 2465 699091934 699092191 1.050000e-94 357
8 TraesCS7B01G422200 chr7A 74.697 743 157 21 1419 2143 699066866 699067595 5.010000e-78 302
9 TraesCS7B01G422200 chr7A 76.147 436 81 17 1592 2023 10831404 10831820 1.120000e-49 207
10 TraesCS7B01G422200 chr5D 99.310 145 0 1 1 144 408196085 408195941 8.500000e-66 261
11 TraesCS7B01G422200 chr5A 100.000 141 0 0 1 141 324526946 324527086 8.500000e-66 261
12 TraesCS7B01G422200 chr5A 98.621 145 0 2 1 144 32694961 32695104 3.960000e-64 255
13 TraesCS7B01G422200 chr5A 95.455 154 7 0 1 154 635635012 635635165 2.380000e-61 246
14 TraesCS7B01G422200 chr5A 93.939 165 3 6 1 161 654380202 654380363 3.080000e-60 243
15 TraesCS7B01G422200 chr5A 91.860 172 6 6 1 171 686029558 686029722 1.850000e-57 233
16 TraesCS7B01G422200 chrUn 98.621 145 2 0 1 145 411590772 411590916 1.100000e-64 257
17 TraesCS7B01G422200 chr2B 92.571 175 8 5 1 174 543258889 543259059 2.380000e-61 246
18 TraesCS7B01G422200 chr2B 76.522 345 75 6 1703 2044 547096411 547096070 1.890000e-42 183
19 TraesCS7B01G422200 chr7D 82.353 289 42 4 175 455 607381613 607381326 3.080000e-60 243
20 TraesCS7B01G422200 chr1A 92.308 169 10 3 1 168 58149337 58149171 1.430000e-58 237
21 TraesCS7B01G422200 chr1A 73.185 496 114 14 1562 2049 97793328 97793812 8.870000e-36 161
22 TraesCS7B01G422200 chr4A 75.957 470 88 16 1580 2044 726576586 726576137 5.190000e-53 219
23 TraesCS7B01G422200 chr2D 73.357 563 136 12 1535 2093 469226601 469226049 2.430000e-46 196
24 TraesCS7B01G422200 chr1D 75.284 352 81 5 1701 2049 79116460 79116808 2.470000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G422200 chr7B 691457183 691460274 3091 False 5710.000000 5710 100.000000 1 3092 1 chr7B.!!$F1 3091
1 TraesCS7B01G422200 chr7B 691196582 691197516 934 True 492.000000 492 76.594000 1052 1992 1 chr7B.!!$R1 940
2 TraesCS7B01G422200 chr7B 691275508 691276790 1282 True 321.000000 446 79.548000 1030 2117 2 chr7B.!!$R2 1087
3 TraesCS7B01G422200 chr7A 699090586 699094571 3985 False 896.666667 1788 89.505333 753 2984 3 chr7A.!!$F4 2231
4 TraesCS7B01G422200 chr7A 699075159 699075708 549 False 617.000000 617 86.780000 132 718 1 chr7A.!!$F3 586
5 TraesCS7B01G422200 chr7A 699066866 699067595 729 False 302.000000 302 74.697000 1419 2143 1 chr7A.!!$F2 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 481 0.097674 CGCCATTACTCTGTTGCAGC 59.902 55.0 0.0 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2127 2367 0.668706 CTGCGGTCTCAGGTGAAGTG 60.669 60.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.977789 TGTTTGTCTATGTATTCACACATGT 57.022 32.000 0.00 0.00 39.46 3.21
26 27 9.665719 TGTTTGTCTATGTATTCACACATGTAT 57.334 29.630 0.00 0.00 39.46 2.29
36 37 8.608317 TGTATTCACACATGTATTATGTTTCCG 58.392 33.333 0.00 0.00 0.00 4.30
37 38 6.429791 TTCACACATGTATTATGTTTCCGG 57.570 37.500 0.00 0.00 0.00 5.14
38 39 5.492895 TCACACATGTATTATGTTTCCGGT 58.507 37.500 0.00 0.00 0.00 5.28
39 40 5.941058 TCACACATGTATTATGTTTCCGGTT 59.059 36.000 0.00 0.00 0.00 4.44
40 41 7.104290 TCACACATGTATTATGTTTCCGGTTA 58.896 34.615 0.00 0.00 0.00 2.85
41 42 7.606839 TCACACATGTATTATGTTTCCGGTTAA 59.393 33.333 0.00 0.00 0.00 2.01
42 43 8.402472 CACACATGTATTATGTTTCCGGTTAAT 58.598 33.333 0.00 1.95 0.00 1.40
43 44 9.616156 ACACATGTATTATGTTTCCGGTTAATA 57.384 29.630 0.00 0.00 0.00 0.98
44 45 9.872757 CACATGTATTATGTTTCCGGTTAATAC 57.127 33.333 0.00 12.47 37.73 1.89
45 46 9.616156 ACATGTATTATGTTTCCGGTTAATACA 57.384 29.630 22.83 22.83 44.85 2.29
53 54 7.311364 TGTTTCCGGTTAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
54 55 6.879993 TGTTTCCGGTTAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
55 56 7.554835 TGTTTCCGGTTAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
56 57 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
57 58 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
58 59 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
59 60 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
60 61 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
118 119 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
130 131 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
143 144 9.565213 GCATATTTCCTTCAAATATAGCATCAC 57.435 33.333 12.03 0.00 43.25 3.06
162 163 6.647067 GCATCACTTTAGCCGAGATAGTTTAT 59.353 38.462 0.00 0.00 0.00 1.40
172 173 5.051641 GCCGAGATAGTTTATCGTCAAAGTG 60.052 44.000 0.00 0.00 40.12 3.16
250 252 5.361857 CAGTGATGAAATAAAATCAGGGGCT 59.638 40.000 0.00 0.00 33.58 5.19
268 270 4.137543 GGGCTGTATTGTCCCAAAGATAG 58.862 47.826 0.00 0.00 39.82 2.08
308 310 8.248253 TGTAACTAGATTTAGCGAGACAATCAA 58.752 33.333 0.00 0.00 30.51 2.57
313 315 5.934625 AGATTTAGCGAGACAATCAACAACT 59.065 36.000 0.00 0.00 30.51 3.16
332 334 1.475682 CTTCATTTGCCTCCCTCTTGC 59.524 52.381 0.00 0.00 0.00 4.01
339 341 1.527433 GCCTCCCTCTTGCACAAACC 61.527 60.000 0.00 0.00 0.00 3.27
342 344 0.400213 TCCCTCTTGCACAAACCGAT 59.600 50.000 0.00 0.00 0.00 4.18
437 439 3.485394 TCAGCATTGTTAACTGCCTCAA 58.515 40.909 14.33 0.00 39.22 3.02
441 443 6.377996 TCAGCATTGTTAACTGCCTCAATAAT 59.622 34.615 14.33 0.00 39.22 1.28
446 448 6.358118 TGTTAACTGCCTCAATAATAAGCG 57.642 37.500 7.22 0.00 0.00 4.68
453 455 3.185391 GCCTCAATAATAAGCGAGCTGTC 59.815 47.826 0.00 0.00 0.00 3.51
467 469 1.486310 AGCTGTCTGATTCCGCCATTA 59.514 47.619 0.00 0.00 0.00 1.90
468 470 1.599542 GCTGTCTGATTCCGCCATTAC 59.400 52.381 0.00 0.00 0.00 1.89
469 471 2.743183 GCTGTCTGATTCCGCCATTACT 60.743 50.000 0.00 0.00 0.00 2.24
470 472 3.126831 CTGTCTGATTCCGCCATTACTC 58.873 50.000 0.00 0.00 0.00 2.59
471 473 2.766263 TGTCTGATTCCGCCATTACTCT 59.234 45.455 0.00 0.00 0.00 3.24
473 475 2.766263 TCTGATTCCGCCATTACTCTGT 59.234 45.455 0.00 0.00 0.00 3.41
474 476 3.197766 TCTGATTCCGCCATTACTCTGTT 59.802 43.478 0.00 0.00 0.00 3.16
475 477 3.270027 TGATTCCGCCATTACTCTGTTG 58.730 45.455 0.00 0.00 0.00 3.33
476 478 1.448985 TTCCGCCATTACTCTGTTGC 58.551 50.000 0.00 0.00 0.00 4.17
477 479 0.323302 TCCGCCATTACTCTGTTGCA 59.677 50.000 0.00 0.00 0.00 4.08
478 480 0.729116 CCGCCATTACTCTGTTGCAG 59.271 55.000 0.00 0.00 0.00 4.41
479 481 0.097674 CGCCATTACTCTGTTGCAGC 59.902 55.000 0.00 0.00 0.00 5.25
480 482 0.453390 GCCATTACTCTGTTGCAGCC 59.547 55.000 0.00 0.00 0.00 4.85
481 483 1.098050 CCATTACTCTGTTGCAGCCC 58.902 55.000 0.00 0.00 0.00 5.19
482 484 1.614051 CCATTACTCTGTTGCAGCCCA 60.614 52.381 0.00 0.00 0.00 5.36
483 485 2.372264 CATTACTCTGTTGCAGCCCAT 58.628 47.619 0.00 0.00 0.00 4.00
484 486 3.544684 CATTACTCTGTTGCAGCCCATA 58.455 45.455 0.00 0.00 0.00 2.74
485 487 3.931907 TTACTCTGTTGCAGCCCATAT 57.068 42.857 0.00 0.00 0.00 1.78
486 488 2.048444 ACTCTGTTGCAGCCCATATG 57.952 50.000 0.00 0.00 0.00 1.78
487 489 1.315690 CTCTGTTGCAGCCCATATGG 58.684 55.000 15.41 15.41 37.09 2.74
488 490 0.625316 TCTGTTGCAGCCCATATGGT 59.375 50.000 20.46 0.00 36.04 3.55
522 524 1.675310 CATTGCGAAGGTGAGGGCA 60.675 57.895 0.00 0.00 0.00 5.36
523 525 1.033746 CATTGCGAAGGTGAGGGCAT 61.034 55.000 0.00 0.00 35.03 4.40
563 565 3.428725 GGCACAAAGTTGACATGTGTTGA 60.429 43.478 1.15 0.00 44.79 3.18
564 566 4.172505 GCACAAAGTTGACATGTGTTGAA 58.827 39.130 1.15 0.00 44.79 2.69
565 567 4.624882 GCACAAAGTTGACATGTGTTGAAA 59.375 37.500 1.15 0.00 44.79 2.69
566 568 5.119898 GCACAAAGTTGACATGTGTTGAAAA 59.880 36.000 1.15 0.00 44.79 2.29
567 569 6.347240 GCACAAAGTTGACATGTGTTGAAAAA 60.347 34.615 1.15 0.00 44.79 1.94
568 570 7.623925 GCACAAAGTTGACATGTGTTGAAAAAT 60.624 33.333 1.15 0.00 44.79 1.82
569 571 8.867935 CACAAAGTTGACATGTGTTGAAAAATA 58.132 29.630 1.15 0.00 39.60 1.40
570 572 9.086336 ACAAAGTTGACATGTGTTGAAAAATAG 57.914 29.630 1.15 0.00 0.00 1.73
571 573 9.299963 CAAAGTTGACATGTGTTGAAAAATAGA 57.700 29.630 1.15 0.00 0.00 1.98
572 574 9.868277 AAAGTTGACATGTGTTGAAAAATAGAA 57.132 25.926 1.15 0.00 0.00 2.10
573 575 9.868277 AAGTTGACATGTGTTGAAAAATAGAAA 57.132 25.926 1.15 0.00 0.00 2.52
574 576 9.868277 AGTTGACATGTGTTGAAAAATAGAAAA 57.132 25.926 1.15 0.00 0.00 2.29
577 579 9.092876 TGACATGTGTTGAAAAATAGAAAAACC 57.907 29.630 1.15 0.00 0.00 3.27
578 580 8.432110 ACATGTGTTGAAAAATAGAAAAACCC 57.568 30.769 0.00 0.00 0.00 4.11
579 581 7.497579 ACATGTGTTGAAAAATAGAAAAACCCC 59.502 33.333 0.00 0.00 0.00 4.95
580 582 6.947464 TGTGTTGAAAAATAGAAAAACCCCA 58.053 32.000 0.00 0.00 0.00 4.96
581 583 7.394816 TGTGTTGAAAAATAGAAAAACCCCAA 58.605 30.769 0.00 0.00 0.00 4.12
582 584 7.334671 TGTGTTGAAAAATAGAAAAACCCCAAC 59.665 33.333 0.00 0.00 0.00 3.77
583 585 6.824196 TGTTGAAAAATAGAAAAACCCCAACC 59.176 34.615 0.00 0.00 31.91 3.77
584 586 5.602628 TGAAAAATAGAAAAACCCCAACCG 58.397 37.500 0.00 0.00 0.00 4.44
585 587 3.671008 AAATAGAAAAACCCCAACCGC 57.329 42.857 0.00 0.00 0.00 5.68
586 588 1.170442 ATAGAAAAACCCCAACCGCG 58.830 50.000 0.00 0.00 0.00 6.46
587 589 0.108207 TAGAAAAACCCCAACCGCGA 59.892 50.000 8.23 0.00 0.00 5.87
617 619 5.891451 AGAAAACCAAGAAGAAAACCGAAG 58.109 37.500 0.00 0.00 0.00 3.79
714 717 7.247929 ACTAGAGAAAACGAAGGAAAACTTG 57.752 36.000 0.00 0.00 40.21 3.16
750 753 9.599866 AAAAGAAAGGAAAACTTATCCAAACAG 57.400 29.630 0.00 0.00 38.85 3.16
751 754 7.898014 AGAAAGGAAAACTTATCCAAACAGT 57.102 32.000 0.00 0.00 38.85 3.55
763 766 9.313118 ACTTATCCAAACAGTCAAATCAAAAAC 57.687 29.630 0.00 0.00 0.00 2.43
774 777 6.091577 AGTCAAATCAAAAACGGAAAAACACC 59.908 34.615 0.00 0.00 0.00 4.16
798 812 5.359194 AGAAAAGAATCCCGCAGAGAATA 57.641 39.130 0.00 0.00 0.00 1.75
800 814 5.129485 AGAAAAGAATCCCGCAGAGAATAGA 59.871 40.000 0.00 0.00 0.00 1.98
834 848 3.681835 GTGTCTGAGTCGGGCCGT 61.682 66.667 27.32 7.44 0.00 5.68
849 863 2.018544 CCGTTGCGTGGAGAAAACA 58.981 52.632 0.00 0.00 0.00 2.83
850 864 0.316689 CCGTTGCGTGGAGAAAACAC 60.317 55.000 0.00 0.00 35.55 3.32
851 865 0.375454 CGTTGCGTGGAGAAAACACA 59.625 50.000 0.00 0.00 38.74 3.72
852 866 1.594518 CGTTGCGTGGAGAAAACACAG 60.595 52.381 0.00 0.00 38.74 3.66
853 867 1.668751 GTTGCGTGGAGAAAACACAGA 59.331 47.619 0.00 0.00 38.74 3.41
854 868 1.581934 TGCGTGGAGAAAACACAGAG 58.418 50.000 0.00 0.00 38.74 3.35
855 869 1.138069 TGCGTGGAGAAAACACAGAGA 59.862 47.619 0.00 0.00 38.74 3.10
856 870 2.210116 GCGTGGAGAAAACACAGAGAA 58.790 47.619 0.00 0.00 38.74 2.87
857 871 2.612212 GCGTGGAGAAAACACAGAGAAA 59.388 45.455 0.00 0.00 38.74 2.52
858 872 3.064820 GCGTGGAGAAAACACAGAGAAAA 59.935 43.478 0.00 0.00 38.74 2.29
859 873 4.786609 GCGTGGAGAAAACACAGAGAAAAG 60.787 45.833 0.00 0.00 38.74 2.27
860 874 4.570772 CGTGGAGAAAACACAGAGAAAAGA 59.429 41.667 0.00 0.00 38.74 2.52
861 875 5.064707 CGTGGAGAAAACACAGAGAAAAGAA 59.935 40.000 0.00 0.00 38.74 2.52
862 876 6.403200 CGTGGAGAAAACACAGAGAAAAGAAA 60.403 38.462 0.00 0.00 38.74 2.52
863 877 6.747739 GTGGAGAAAACACAGAGAAAAGAAAC 59.252 38.462 0.00 0.00 38.67 2.78
882 896 0.676466 CCCTGCCAATAGTTGCGTGA 60.676 55.000 0.00 0.00 0.00 4.35
929 943 4.072088 GCCGTCGTGTTGCCTTCG 62.072 66.667 0.00 0.00 0.00 3.79
962 976 0.758734 CCCATACCAGAATCGCCTCA 59.241 55.000 0.00 0.00 0.00 3.86
977 991 0.528684 CCTCATCGTTCTCCTTCGCC 60.529 60.000 0.00 0.00 0.00 5.54
978 992 0.867753 CTCATCGTTCTCCTTCGCCG 60.868 60.000 0.00 0.00 0.00 6.46
979 993 2.202756 ATCGTTCTCCTTCGCCGC 60.203 61.111 0.00 0.00 0.00 6.53
980 994 2.711922 ATCGTTCTCCTTCGCCGCT 61.712 57.895 0.00 0.00 0.00 5.52
981 995 2.890847 ATCGTTCTCCTTCGCCGCTG 62.891 60.000 0.00 0.00 0.00 5.18
982 996 3.491652 GTTCTCCTTCGCCGCTGC 61.492 66.667 0.00 0.00 0.00 5.25
1005 1019 1.751927 CTCCAGTGGGGCAATGCTC 60.752 63.158 9.92 0.00 36.21 4.26
1012 1026 3.599704 GGGCAATGCTCGCATCCC 61.600 66.667 4.82 11.51 34.63 3.85
1013 1027 3.599704 GGCAATGCTCGCATCCCC 61.600 66.667 4.82 5.12 35.31 4.81
1014 1028 2.829914 GCAATGCTCGCATCCCCA 60.830 61.111 4.68 0.00 35.31 4.96
1017 1031 2.123428 AATGCTCGCATCCCCAAGC 61.123 57.895 4.68 0.00 35.31 4.01
1087 1101 2.918131 GCGCACTTGTTCAAGATCAACC 60.918 50.000 17.75 0.13 0.00 3.77
1172 1186 3.056458 CTACCACTGGTGCGTCCA 58.944 61.111 11.32 0.65 45.01 4.02
1192 1206 0.964358 CTTCTACCCCGACGGTCACT 60.964 60.000 13.94 0.00 43.58 3.41
1201 1215 1.978617 GACGGTCACTCGGGGGTAA 60.979 63.158 2.62 0.00 0.00 2.85
1303 1329 1.695893 CCGTCGCACACAGCCTTATG 61.696 60.000 0.00 0.00 41.38 1.90
1307 1333 0.248336 CGCACACAGCCTTATGCATG 60.248 55.000 10.16 0.00 44.83 4.06
1357 1383 5.127031 TCGGAGTTTGACTCATGTGATGATA 59.873 40.000 9.99 0.00 46.79 2.15
1358 1384 5.812127 CGGAGTTTGACTCATGTGATGATAA 59.188 40.000 9.99 0.00 46.79 1.75
1363 1389 4.936891 TGACTCATGTGATGATAACTCGG 58.063 43.478 0.94 0.00 38.85 4.63
1379 1405 2.116125 GGCCTGCTGTGGTTTCCT 59.884 61.111 0.00 0.00 0.00 3.36
1387 1413 1.128692 GCTGTGGTTTCCTCGATTTCG 59.871 52.381 0.00 0.00 41.45 3.46
1389 1415 2.806244 CTGTGGTTTCCTCGATTTCGTT 59.194 45.455 0.00 0.00 40.80 3.85
1390 1416 2.546368 TGTGGTTTCCTCGATTTCGTTG 59.454 45.455 0.00 0.00 40.80 4.10
1476 1502 8.193438 GCTGTTATCAAATTTAAGAAGGCAGAT 58.807 33.333 0.00 0.00 0.00 2.90
1551 1577 5.567423 GCTGGACAATCTTGGTAAATTGCTT 60.567 40.000 0.00 0.00 36.54 3.91
1616 1648 4.567747 GGAGGTTTTCCCAGCTCATAAGAA 60.568 45.833 2.60 0.00 42.18 2.52
1623 1655 3.782523 TCCCAGCTCATAAGAACATCCTT 59.217 43.478 0.00 0.00 0.00 3.36
1633 1665 3.641434 AGAACATCCTTGCTATGCAGT 57.359 42.857 0.00 0.00 40.61 4.40
1634 1666 3.276857 AGAACATCCTTGCTATGCAGTG 58.723 45.455 0.00 0.00 40.61 3.66
1635 1667 1.386533 ACATCCTTGCTATGCAGTGC 58.613 50.000 8.58 8.58 40.61 4.40
1638 1677 1.378911 CCTTGCTATGCAGTGCCCA 60.379 57.895 13.72 1.61 40.61 5.36
1688 1727 6.535150 CCGATGAAGAACAAGTCTAAGCATAA 59.465 38.462 0.00 0.00 34.56 1.90
1690 1729 8.060679 CGATGAAGAACAAGTCTAAGCATAATG 58.939 37.037 0.00 0.00 34.56 1.90
1751 1790 3.881688 GCATTGCTCCACTTCATCTACAT 59.118 43.478 0.16 0.00 0.00 2.29
1894 2134 2.177394 TTGTGATAGACTTTGCGCCA 57.823 45.000 4.18 0.00 0.00 5.69
1962 2202 1.065701 CAGCTCAAAGATGGCTGCATC 59.934 52.381 0.50 3.06 41.02 3.91
2097 2337 6.390987 AAGACTCGCAAAATTTAGTAGTCG 57.609 37.500 13.07 3.69 37.53 4.18
2114 2354 3.267483 AGTCGGACCGTGGATTAATTTG 58.733 45.455 14.79 0.00 0.00 2.32
2119 2359 3.065371 GGACCGTGGATTAATTTGAGCAG 59.935 47.826 0.00 0.00 0.00 4.24
2120 2360 3.938963 GACCGTGGATTAATTTGAGCAGA 59.061 43.478 0.00 0.00 0.00 4.26
2121 2361 4.526970 ACCGTGGATTAATTTGAGCAGAT 58.473 39.130 0.00 0.00 0.00 2.90
2122 2362 5.680619 ACCGTGGATTAATTTGAGCAGATA 58.319 37.500 0.00 0.00 0.00 1.98
2127 2367 8.651588 CGTGGATTAATTTGAGCAGATATAGTC 58.348 37.037 0.00 0.00 0.00 2.59
2134 2374 8.430801 AATTTGAGCAGATATAGTCACTTCAC 57.569 34.615 0.00 0.00 0.00 3.18
2135 2375 5.521906 TGAGCAGATATAGTCACTTCACC 57.478 43.478 0.00 0.00 0.00 4.02
2143 2383 0.962489 AGTCACTTCACCTGAGACCG 59.038 55.000 0.00 0.00 0.00 4.79
2144 2384 0.667792 GTCACTTCACCTGAGACCGC 60.668 60.000 0.00 0.00 0.00 5.68
2145 2385 1.112916 TCACTTCACCTGAGACCGCA 61.113 55.000 0.00 0.00 0.00 5.69
2146 2386 0.668706 CACTTCACCTGAGACCGCAG 60.669 60.000 0.00 0.00 35.66 5.18
2147 2387 1.739562 CTTCACCTGAGACCGCAGC 60.740 63.158 0.00 0.00 34.56 5.25
2148 2388 2.440385 CTTCACCTGAGACCGCAGCA 62.440 60.000 0.00 0.00 34.56 4.41
2149 2389 2.031012 CACCTGAGACCGCAGCAA 59.969 61.111 0.00 0.00 34.56 3.91
2150 2390 2.031163 ACCTGAGACCGCAGCAAC 59.969 61.111 0.00 0.00 34.56 4.17
2151 2391 2.743928 CCTGAGACCGCAGCAACC 60.744 66.667 0.00 0.00 34.56 3.77
2152 2392 2.031012 CTGAGACCGCAGCAACCA 59.969 61.111 0.00 0.00 0.00 3.67
2153 2393 2.031012 TGAGACCGCAGCAACCAG 59.969 61.111 0.00 0.00 0.00 4.00
2154 2394 3.426568 GAGACCGCAGCAACCAGC 61.427 66.667 0.00 0.00 46.19 4.85
2169 2409 6.054035 GCAACCAGCTGAGATAAGTTTATC 57.946 41.667 17.39 4.12 41.15 1.75
2170 2410 5.819901 GCAACCAGCTGAGATAAGTTTATCT 59.180 40.000 17.39 12.88 45.05 1.98
2171 2411 6.317391 GCAACCAGCTGAGATAAGTTTATCTT 59.683 38.462 17.39 0.00 43.80 2.40
2172 2412 7.148171 GCAACCAGCTGAGATAAGTTTATCTTT 60.148 37.037 17.39 2.62 43.80 2.52
2203 2443 8.610248 TTGTTGATAATTTGTAAGTTCTCCGA 57.390 30.769 0.00 0.00 0.00 4.55
2204 2444 8.251750 TGTTGATAATTTGTAAGTTCTCCGAG 57.748 34.615 0.00 0.00 0.00 4.63
2205 2445 8.092068 TGTTGATAATTTGTAAGTTCTCCGAGA 58.908 33.333 0.00 0.00 0.00 4.04
2206 2446 9.099454 GTTGATAATTTGTAAGTTCTCCGAGAT 57.901 33.333 0.00 0.00 0.00 2.75
2207 2447 8.873215 TGATAATTTGTAAGTTCTCCGAGATC 57.127 34.615 0.00 0.00 0.00 2.75
2208 2448 7.926555 TGATAATTTGTAAGTTCTCCGAGATCC 59.073 37.037 0.00 0.00 0.00 3.36
2209 2449 5.941555 ATTTGTAAGTTCTCCGAGATCCT 57.058 39.130 0.00 0.00 0.00 3.24
2210 2450 7.419711 AATTTGTAAGTTCTCCGAGATCCTA 57.580 36.000 0.00 0.00 0.00 2.94
2223 2463 4.512944 CCGAGATCCTATTGTGAAATGTGG 59.487 45.833 0.00 0.00 0.00 4.17
2240 2480 7.768120 TGAAATGTGGTGAAACTTTAGCAAATT 59.232 29.630 0.00 0.00 34.62 1.82
2247 2487 6.868339 GGTGAAACTTTAGCAAATTGCAGTAT 59.132 34.615 20.82 1.48 41.38 2.12
2287 2527 4.620589 AAATGATTGATTGGTGCCAACA 57.379 36.364 5.72 4.29 38.88 3.33
2300 2540 4.708909 TGGTGCCAACAATTTATGCTATGA 59.291 37.500 0.00 0.00 0.00 2.15
2335 2575 8.129211 GGTAATTATACAAAACCTGTGCAGATC 58.871 37.037 0.02 0.00 39.20 2.75
2337 2577 1.620822 ACAAAACCTGTGCAGATCCC 58.379 50.000 0.02 0.00 36.69 3.85
2340 2580 2.364970 CAAAACCTGTGCAGATCCCAAA 59.635 45.455 0.02 0.00 0.00 3.28
2375 2619 1.571460 CAGCCTCACTGTTCGTTGC 59.429 57.895 0.00 0.00 41.86 4.17
2400 2644 8.184848 GCTTTTCCTTATCAAGTAGGACAATTC 58.815 37.037 0.00 0.00 40.19 2.17
2458 2702 6.560253 ATTTCACTTGCTAAGTTGTTCGAT 57.440 33.333 0.00 0.00 40.46 3.59
2474 4570 4.202020 TGTTCGATAGCTAGTTAGTGCAGG 60.202 45.833 0.00 0.00 0.00 4.85
2480 4576 7.013942 TCGATAGCTAGTTAGTGCAGGAATTTA 59.986 37.037 0.00 0.00 0.00 1.40
2483 4579 6.109359 AGCTAGTTAGTGCAGGAATTTACTG 58.891 40.000 4.11 4.11 38.95 2.74
2497 4593 6.714810 AGGAATTTACTGCGAATATATTGGCA 59.285 34.615 26.99 26.99 46.72 4.92
2525 4621 4.393062 GTCTGCAAGCTAACAAGATGCTTA 59.607 41.667 5.93 0.00 44.04 3.09
2530 4626 5.335191 GCAAGCTAACAAGATGCTTAGTTGT 60.335 40.000 0.00 0.00 44.04 3.32
2531 4627 6.310197 CAAGCTAACAAGATGCTTAGTTGTC 58.690 40.000 0.00 0.00 44.04 3.18
2532 4628 5.799213 AGCTAACAAGATGCTTAGTTGTCT 58.201 37.500 0.00 0.00 33.25 3.41
2533 4629 5.872070 AGCTAACAAGATGCTTAGTTGTCTC 59.128 40.000 0.00 0.00 33.25 3.36
2534 4630 5.639506 GCTAACAAGATGCTTAGTTGTCTCA 59.360 40.000 0.00 0.00 33.25 3.27
2535 4631 6.183360 GCTAACAAGATGCTTAGTTGTCTCAG 60.183 42.308 0.00 2.10 33.25 3.35
2539 4635 3.450457 AGATGCTTAGTTGTCTCAGAGGG 59.550 47.826 0.00 0.00 0.00 4.30
2563 4659 3.641437 TTTACTTGGCACAGCAATGTC 57.359 42.857 0.00 0.00 42.39 3.06
2574 4670 3.442996 GCAATGTCGTGCTACTCCT 57.557 52.632 0.00 0.00 41.51 3.69
2581 4677 0.963962 TCGTGCTACTCCTTCGGTTT 59.036 50.000 0.00 0.00 0.00 3.27
2726 4842 2.894765 TCATGGTCAGGTTGTAGAACGA 59.105 45.455 0.00 0.00 32.28 3.85
2747 4863 4.856487 CGACATACGCATTTGGTTCAAATT 59.144 37.500 3.43 0.00 41.40 1.82
2754 4870 4.321156 CGCATTTGGTTCAAATTCCTCTCA 60.321 41.667 3.43 0.00 40.60 3.27
2756 4872 5.279156 GCATTTGGTTCAAATTCCTCTCACT 60.279 40.000 3.43 0.00 40.60 3.41
2766 4882 1.982660 TCCTCTCACTGTCTCACGTT 58.017 50.000 0.00 0.00 0.00 3.99
2768 4884 2.293677 TCCTCTCACTGTCTCACGTTTC 59.706 50.000 0.00 0.00 0.00 2.78
2772 4888 3.881089 TCTCACTGTCTCACGTTTCTGTA 59.119 43.478 0.00 0.00 0.00 2.74
2774 4890 4.357142 TCACTGTCTCACGTTTCTGTAAC 58.643 43.478 0.00 0.00 0.00 2.50
2779 4895 4.142116 TGTCTCACGTTTCTGTAACCTGAA 60.142 41.667 0.00 0.00 33.37 3.02
2789 4905 5.970317 TCTGTAACCTGAACTACGAATGA 57.030 39.130 0.00 0.00 0.00 2.57
2802 4918 5.262804 ACTACGAATGAGGAACCTTCTAGT 58.737 41.667 0.00 0.00 0.00 2.57
2804 4920 5.074584 ACGAATGAGGAACCTTCTAGTTC 57.925 43.478 0.00 0.00 44.45 3.01
2812 4932 6.954684 TGAGGAACCTTCTAGTTCTGTAGAAT 59.045 38.462 4.58 0.00 44.56 2.40
2817 4937 9.738832 GAACCTTCTAGTTCTGTAGAATCATAC 57.261 37.037 0.00 0.00 42.37 2.39
2847 4967 3.383505 GTGTGGCCTACAAAAAGAAAGGT 59.616 43.478 3.32 0.00 41.89 3.50
2856 4976 7.747799 GCCTACAAAAAGAAAGGTAAATACGAC 59.252 37.037 0.00 0.00 0.00 4.34
2857 4977 7.953710 CCTACAAAAAGAAAGGTAAATACGACG 59.046 37.037 0.00 0.00 0.00 5.12
2865 4985 6.707608 AGAAAGGTAAATACGACGAAAAACCT 59.292 34.615 0.00 4.90 37.71 3.50
2868 4988 5.636543 AGGTAAATACGACGAAAAACCTCAG 59.363 40.000 0.00 0.00 30.31 3.35
2869 4989 4.400036 AAATACGACGAAAAACCTCAGC 57.600 40.909 0.00 0.00 0.00 4.26
2927 5047 1.516386 CTGCGCCACTCGTTCGTAT 60.516 57.895 4.18 0.00 41.07 3.06
2928 5048 1.076533 CTGCGCCACTCGTTCGTATT 61.077 55.000 4.18 0.00 41.07 1.89
2929 5049 0.668096 TGCGCCACTCGTTCGTATTT 60.668 50.000 4.18 0.00 41.07 1.40
2930 5050 0.024619 GCGCCACTCGTTCGTATTTC 59.975 55.000 0.00 0.00 41.07 2.17
2931 5051 0.643820 CGCCACTCGTTCGTATTTCC 59.356 55.000 0.00 0.00 0.00 3.13
2932 5052 1.717194 GCCACTCGTTCGTATTTCCA 58.283 50.000 0.00 0.00 0.00 3.53
2933 5053 1.392510 GCCACTCGTTCGTATTTCCAC 59.607 52.381 0.00 0.00 0.00 4.02
2934 5054 1.652124 CCACTCGTTCGTATTTCCACG 59.348 52.381 0.00 0.00 43.28 4.94
2963 5083 4.033009 TGACATCCATGGTGTACTCTCAT 58.967 43.478 12.58 0.00 0.00 2.90
2965 5085 5.840693 TGACATCCATGGTGTACTCTCATAT 59.159 40.000 12.58 0.00 0.00 1.78
2991 5111 8.673711 TCAACAAATGAGTAACTGTATATTGGC 58.326 33.333 0.00 0.00 33.04 4.52
2992 5112 8.677300 CAACAAATGAGTAACTGTATATTGGCT 58.323 33.333 0.00 0.00 0.00 4.75
2993 5113 8.438676 ACAAATGAGTAACTGTATATTGGCTC 57.561 34.615 0.00 0.00 0.00 4.70
2994 5114 8.046708 ACAAATGAGTAACTGTATATTGGCTCA 58.953 33.333 0.00 0.00 36.39 4.26
2995 5115 8.892723 CAAATGAGTAACTGTATATTGGCTCAA 58.107 33.333 0.00 0.00 35.72 3.02
2996 5116 9.461312 AAATGAGTAACTGTATATTGGCTCAAA 57.539 29.630 0.00 0.00 35.72 2.69
2997 5117 9.461312 AATGAGTAACTGTATATTGGCTCAAAA 57.539 29.630 0.00 0.00 35.72 2.44
2998 5118 8.856153 TGAGTAACTGTATATTGGCTCAAAAA 57.144 30.769 0.00 0.00 0.00 1.94
3053 5173 8.697507 ATCAGTTTCCAAATAAAGAGTTCAGT 57.302 30.769 0.00 0.00 0.00 3.41
3054 5174 7.930217 TCAGTTTCCAAATAAAGAGTTCAGTG 58.070 34.615 0.00 0.00 0.00 3.66
3055 5175 7.773224 TCAGTTTCCAAATAAAGAGTTCAGTGA 59.227 33.333 0.00 0.00 0.00 3.41
3056 5176 8.571336 CAGTTTCCAAATAAAGAGTTCAGTGAT 58.429 33.333 0.00 0.00 0.00 3.06
3057 5177 9.136323 AGTTTCCAAATAAAGAGTTCAGTGATT 57.864 29.630 0.00 0.00 0.00 2.57
3076 5196 9.676195 CAGTGATTATATATCTCTAGCATTCGG 57.324 37.037 0.00 0.00 0.00 4.30
3077 5197 8.855110 AGTGATTATATATCTCTAGCATTCGGG 58.145 37.037 0.00 0.00 0.00 5.14
3078 5198 8.634444 GTGATTATATATCTCTAGCATTCGGGT 58.366 37.037 0.00 0.00 0.00 5.28
3079 5199 8.851145 TGATTATATATCTCTAGCATTCGGGTC 58.149 37.037 0.00 0.00 0.00 4.46
3080 5200 7.584122 TTATATATCTCTAGCATTCGGGTCC 57.416 40.000 0.00 0.00 0.00 4.46
3081 5201 1.343069 ATCTCTAGCATTCGGGTCCC 58.657 55.000 0.00 0.00 0.00 4.46
3082 5202 0.032515 TCTCTAGCATTCGGGTCCCA 60.033 55.000 9.12 0.00 0.00 4.37
3083 5203 0.830648 CTCTAGCATTCGGGTCCCAA 59.169 55.000 9.12 1.86 0.00 4.12
3084 5204 1.417890 CTCTAGCATTCGGGTCCCAAT 59.582 52.381 9.12 4.31 0.00 3.16
3085 5205 1.416401 TCTAGCATTCGGGTCCCAATC 59.584 52.381 9.12 2.59 0.00 2.67
3086 5206 1.140852 CTAGCATTCGGGTCCCAATCA 59.859 52.381 9.12 0.00 0.00 2.57
3087 5207 0.394352 AGCATTCGGGTCCCAATCAC 60.394 55.000 9.12 2.41 0.00 3.06
3088 5208 1.384222 GCATTCGGGTCCCAATCACC 61.384 60.000 9.12 0.00 0.00 4.02
3089 5209 0.255890 CATTCGGGTCCCAATCACCT 59.744 55.000 9.12 0.00 33.96 4.00
3090 5210 0.999712 ATTCGGGTCCCAATCACCTT 59.000 50.000 9.12 0.00 33.96 3.50
3091 5211 1.659022 TTCGGGTCCCAATCACCTTA 58.341 50.000 9.12 0.00 33.96 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
10 11 8.608317 CGGAAACATAATACATGTGTGAATACA 58.392 33.333 9.11 0.00 34.63 2.29
11 12 8.067784 CCGGAAACATAATACATGTGTGAATAC 58.932 37.037 9.11 0.00 31.80 1.89
12 13 7.771361 ACCGGAAACATAATACATGTGTGAATA 59.229 33.333 9.46 0.00 31.80 1.75
13 14 6.601613 ACCGGAAACATAATACATGTGTGAAT 59.398 34.615 9.46 0.00 31.80 2.57
14 15 5.941058 ACCGGAAACATAATACATGTGTGAA 59.059 36.000 9.46 0.00 31.80 3.18
15 16 5.492895 ACCGGAAACATAATACATGTGTGA 58.507 37.500 9.46 0.00 31.80 3.58
16 17 5.811399 ACCGGAAACATAATACATGTGTG 57.189 39.130 9.46 4.81 31.80 3.82
17 18 7.925043 TTAACCGGAAACATAATACATGTGT 57.075 32.000 9.46 0.00 31.80 3.72
18 19 9.872757 GTATTAACCGGAAACATAATACATGTG 57.127 33.333 9.46 0.00 39.40 3.21
19 20 9.616156 TGTATTAACCGGAAACATAATACATGT 57.384 29.630 22.31 2.69 42.13 3.21
27 28 9.048446 GCTAGAATTGTATTAACCGGAAACATA 57.952 33.333 9.46 0.00 0.00 2.29
28 29 7.554835 TGCTAGAATTGTATTAACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
29 30 6.879993 TGCTAGAATTGTATTAACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
30 31 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
31 32 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
32 33 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
33 34 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
34 35 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
108 109 7.199105 ATTTGAAGGAAATATGCCCTAGAGGC 61.199 42.308 13.60 13.60 46.62 4.70
109 110 4.982241 TGAAGGAAATATGCCCTAGAGG 57.018 45.455 0.00 0.00 39.47 3.69
112 113 8.897752 GCTATATTTGAAGGAAATATGCCCTAG 58.102 37.037 9.07 0.00 43.96 3.02
113 114 8.390143 TGCTATATTTGAAGGAAATATGCCCTA 58.610 33.333 9.07 0.00 43.96 3.53
114 115 7.240897 TGCTATATTTGAAGGAAATATGCCCT 58.759 34.615 9.07 0.00 43.96 5.19
115 116 7.466746 TGCTATATTTGAAGGAAATATGCCC 57.533 36.000 9.07 0.00 43.96 5.36
116 117 8.742777 TGATGCTATATTTGAAGGAAATATGCC 58.257 33.333 9.07 0.00 43.96 4.40
117 118 9.565213 GTGATGCTATATTTGAAGGAAATATGC 57.435 33.333 9.07 10.17 43.96 3.14
123 124 8.840321 GCTAAAGTGATGCTATATTTGAAGGAA 58.160 33.333 0.00 0.00 0.00 3.36
124 125 7.445402 GGCTAAAGTGATGCTATATTTGAAGGA 59.555 37.037 0.00 0.00 0.00 3.36
125 126 7.571983 CGGCTAAAGTGATGCTATATTTGAAGG 60.572 40.741 0.00 0.00 0.00 3.46
126 127 7.171508 TCGGCTAAAGTGATGCTATATTTGAAG 59.828 37.037 0.00 0.00 0.00 3.02
127 128 6.989759 TCGGCTAAAGTGATGCTATATTTGAA 59.010 34.615 0.00 0.00 0.00 2.69
128 129 6.521162 TCGGCTAAAGTGATGCTATATTTGA 58.479 36.000 0.00 0.00 0.00 2.69
129 130 6.646653 TCTCGGCTAAAGTGATGCTATATTTG 59.353 38.462 0.00 0.00 0.00 2.32
130 131 6.759272 TCTCGGCTAAAGTGATGCTATATTT 58.241 36.000 0.00 0.00 0.00 1.40
143 144 6.436261 TGACGATAAACTATCTCGGCTAAAG 58.564 40.000 0.00 0.00 41.02 1.85
187 189 8.533657 TGGCTGTCTTTTGATGAATAAAATCAT 58.466 29.630 0.00 0.00 42.62 2.45
244 246 4.599860 TGGGACAATACAGCCCCT 57.400 55.556 0.00 0.00 41.31 4.79
268 270 5.753716 TCTAGTTACAGTCCTAGAACTCCC 58.246 45.833 7.22 0.00 37.36 4.30
273 275 7.772292 TCGCTAAATCTAGTTACAGTCCTAGAA 59.228 37.037 11.90 0.00 42.05 2.10
279 281 6.783162 TGTCTCGCTAAATCTAGTTACAGTC 58.217 40.000 0.00 0.00 0.00 3.51
308 310 2.108952 AGAGGGAGGCAAATGAAGTTGT 59.891 45.455 0.00 0.00 0.00 3.32
313 315 1.203038 TGCAAGAGGGAGGCAAATGAA 60.203 47.619 0.00 0.00 34.05 2.57
339 341 9.690428 CAAAGGAGTTTGGGATGATCAACATCG 62.690 44.444 0.00 0.00 43.30 3.84
342 344 4.387026 AAGGAGTTTGGGATGATCAACA 57.613 40.909 0.00 0.00 0.00 3.33
437 439 5.233988 GGAATCAGACAGCTCGCTTATTAT 58.766 41.667 0.00 0.00 0.00 1.28
441 443 1.202302 CGGAATCAGACAGCTCGCTTA 60.202 52.381 0.00 0.00 0.00 3.09
446 448 0.179062 ATGGCGGAATCAGACAGCTC 60.179 55.000 0.00 0.00 0.00 4.09
453 455 3.185246 ACAGAGTAATGGCGGAATCAG 57.815 47.619 0.00 0.00 0.00 2.90
467 469 1.409241 CCATATGGGCTGCAACAGAGT 60.409 52.381 14.52 0.00 32.44 3.24
468 470 1.315690 CCATATGGGCTGCAACAGAG 58.684 55.000 14.52 0.00 32.44 3.35
469 471 0.625316 ACCATATGGGCTGCAACAGA 59.375 50.000 25.55 0.00 42.05 3.41
470 472 1.027357 GACCATATGGGCTGCAACAG 58.973 55.000 25.55 0.00 41.12 3.16
471 473 0.330941 TGACCATATGGGCTGCAACA 59.669 50.000 28.03 3.84 45.91 3.33
473 475 3.500331 CTGACCATATGGGCTGCAA 57.500 52.632 28.03 7.18 45.91 4.08
476 478 1.533219 TGGCTGACCATATGGGCTG 59.467 57.895 28.03 27.05 45.91 4.85
477 479 4.088164 TGGCTGACCATATGGGCT 57.912 55.556 28.03 6.88 45.91 5.19
486 488 4.500375 GCAATGGATTAATCTTGGCTGACC 60.500 45.833 14.95 0.00 0.00 4.02
487 489 4.614946 GCAATGGATTAATCTTGGCTGAC 58.385 43.478 14.95 0.00 0.00 3.51
488 490 3.316029 CGCAATGGATTAATCTTGGCTGA 59.684 43.478 14.95 0.00 0.00 4.26
495 497 4.780815 TCACCTTCGCAATGGATTAATCT 58.219 39.130 14.95 0.00 0.00 2.40
533 535 0.317269 CAACTTTGTGCCTGACGCTG 60.317 55.000 0.00 0.00 38.78 5.18
534 536 0.463654 TCAACTTTGTGCCTGACGCT 60.464 50.000 0.00 0.00 38.78 5.07
541 543 2.859538 CAACACATGTCAACTTTGTGCC 59.140 45.455 0.00 0.00 43.51 5.01
542 544 3.768406 TCAACACATGTCAACTTTGTGC 58.232 40.909 0.00 0.00 43.51 4.57
563 565 4.382291 GCGGTTGGGGTTTTTCTATTTTT 58.618 39.130 0.00 0.00 0.00 1.94
564 566 3.553302 CGCGGTTGGGGTTTTTCTATTTT 60.553 43.478 0.00 0.00 0.00 1.82
565 567 2.029739 CGCGGTTGGGGTTTTTCTATTT 60.030 45.455 0.00 0.00 0.00 1.40
566 568 1.542472 CGCGGTTGGGGTTTTTCTATT 59.458 47.619 0.00 0.00 0.00 1.73
567 569 1.170442 CGCGGTTGGGGTTTTTCTAT 58.830 50.000 0.00 0.00 0.00 1.98
568 570 0.108207 TCGCGGTTGGGGTTTTTCTA 59.892 50.000 6.13 0.00 0.00 2.10
569 571 0.752376 TTCGCGGTTGGGGTTTTTCT 60.752 50.000 6.13 0.00 0.00 2.52
570 572 0.102663 TTTCGCGGTTGGGGTTTTTC 59.897 50.000 6.13 0.00 0.00 2.29
571 573 0.535797 TTTTCGCGGTTGGGGTTTTT 59.464 45.000 6.13 0.00 0.00 1.94
572 574 0.535797 TTTTTCGCGGTTGGGGTTTT 59.464 45.000 6.13 0.00 0.00 2.43
573 575 2.200052 TTTTTCGCGGTTGGGGTTT 58.800 47.368 6.13 0.00 0.00 3.27
574 576 3.936535 TTTTTCGCGGTTGGGGTT 58.063 50.000 6.13 0.00 0.00 4.11
685 688 9.038803 GTTTTCCTTCGTTTTCTCTAGTTTCTA 57.961 33.333 0.00 0.00 0.00 2.10
686 689 7.769507 AGTTTTCCTTCGTTTTCTCTAGTTTCT 59.230 33.333 0.00 0.00 0.00 2.52
694 697 5.066117 AGGACAAGTTTTCCTTCGTTTTCTC 59.934 40.000 4.65 0.00 40.95 2.87
724 727 9.599866 CTGTTTGGATAAGTTTTCCTTTCTTTT 57.400 29.630 12.82 0.00 34.46 2.27
725 728 8.758829 ACTGTTTGGATAAGTTTTCCTTTCTTT 58.241 29.630 12.82 0.00 34.46 2.52
726 729 8.306313 ACTGTTTGGATAAGTTTTCCTTTCTT 57.694 30.769 12.82 0.00 34.46 2.52
727 730 7.559897 TGACTGTTTGGATAAGTTTTCCTTTCT 59.440 33.333 12.82 0.00 34.46 2.52
728 731 7.712797 TGACTGTTTGGATAAGTTTTCCTTTC 58.287 34.615 12.82 4.73 34.46 2.62
729 732 7.654022 TGACTGTTTGGATAAGTTTTCCTTT 57.346 32.000 12.82 0.00 34.46 3.11
730 733 7.654022 TTGACTGTTTGGATAAGTTTTCCTT 57.346 32.000 12.82 0.00 37.17 3.36
731 734 7.654022 TTTGACTGTTTGGATAAGTTTTCCT 57.346 32.000 12.82 0.00 34.17 3.36
732 735 8.141268 TGATTTGACTGTTTGGATAAGTTTTCC 58.859 33.333 5.47 5.47 0.00 3.13
733 736 9.528018 TTGATTTGACTGTTTGGATAAGTTTTC 57.472 29.630 0.00 0.00 0.00 2.29
734 737 9.883142 TTTGATTTGACTGTTTGGATAAGTTTT 57.117 25.926 0.00 0.00 0.00 2.43
735 738 9.883142 TTTTGATTTGACTGTTTGGATAAGTTT 57.117 25.926 0.00 0.00 0.00 2.66
736 739 9.883142 TTTTTGATTTGACTGTTTGGATAAGTT 57.117 25.926 0.00 0.00 0.00 2.66
737 740 9.313118 GTTTTTGATTTGACTGTTTGGATAAGT 57.687 29.630 0.00 0.00 0.00 2.24
738 741 8.479280 CGTTTTTGATTTGACTGTTTGGATAAG 58.521 33.333 0.00 0.00 0.00 1.73
739 742 7.436673 CCGTTTTTGATTTGACTGTTTGGATAA 59.563 33.333 0.00 0.00 0.00 1.75
740 743 6.920758 CCGTTTTTGATTTGACTGTTTGGATA 59.079 34.615 0.00 0.00 0.00 2.59
741 744 5.752955 CCGTTTTTGATTTGACTGTTTGGAT 59.247 36.000 0.00 0.00 0.00 3.41
742 745 5.105716 TCCGTTTTTGATTTGACTGTTTGGA 60.106 36.000 0.00 0.00 0.00 3.53
743 746 5.105752 TCCGTTTTTGATTTGACTGTTTGG 58.894 37.500 0.00 0.00 0.00 3.28
744 747 6.639671 TTCCGTTTTTGATTTGACTGTTTG 57.360 33.333 0.00 0.00 0.00 2.93
745 748 7.659652 TTTTCCGTTTTTGATTTGACTGTTT 57.340 28.000 0.00 0.00 0.00 2.83
746 749 7.171678 TGTTTTTCCGTTTTTGATTTGACTGTT 59.828 29.630 0.00 0.00 0.00 3.16
747 750 6.647067 TGTTTTTCCGTTTTTGATTTGACTGT 59.353 30.769 0.00 0.00 0.00 3.55
748 751 6.953189 GTGTTTTTCCGTTTTTGATTTGACTG 59.047 34.615 0.00 0.00 0.00 3.51
749 752 6.091577 GGTGTTTTTCCGTTTTTGATTTGACT 59.908 34.615 0.00 0.00 0.00 3.41
750 753 6.244999 GGTGTTTTTCCGTTTTTGATTTGAC 58.755 36.000 0.00 0.00 0.00 3.18
751 754 5.062308 CGGTGTTTTTCCGTTTTTGATTTGA 59.938 36.000 0.00 0.00 42.62 2.69
774 777 1.929836 CTCTGCGGGATTCTTTTCTCG 59.070 52.381 0.00 0.00 42.56 4.04
820 834 4.373116 GCAACGGCCCGACTCAGA 62.373 66.667 11.71 0.00 0.00 3.27
834 848 1.939934 CTCTGTGTTTTCTCCACGCAA 59.060 47.619 0.00 0.00 34.31 4.85
849 863 2.091885 TGGCAGGGTTTCTTTTCTCTGT 60.092 45.455 0.00 0.00 0.00 3.41
850 864 2.586425 TGGCAGGGTTTCTTTTCTCTG 58.414 47.619 0.00 0.00 0.00 3.35
851 865 3.312736 TTGGCAGGGTTTCTTTTCTCT 57.687 42.857 0.00 0.00 0.00 3.10
852 866 4.767409 ACTATTGGCAGGGTTTCTTTTCTC 59.233 41.667 0.00 0.00 0.00 2.87
853 867 4.740902 ACTATTGGCAGGGTTTCTTTTCT 58.259 39.130 0.00 0.00 0.00 2.52
854 868 5.230182 CAACTATTGGCAGGGTTTCTTTTC 58.770 41.667 0.00 0.00 0.00 2.29
855 869 4.503123 GCAACTATTGGCAGGGTTTCTTTT 60.503 41.667 0.00 0.00 0.00 2.27
856 870 3.006859 GCAACTATTGGCAGGGTTTCTTT 59.993 43.478 0.00 0.00 0.00 2.52
857 871 2.562738 GCAACTATTGGCAGGGTTTCTT 59.437 45.455 0.00 0.00 0.00 2.52
858 872 2.171003 GCAACTATTGGCAGGGTTTCT 58.829 47.619 0.00 0.00 0.00 2.52
859 873 1.135402 CGCAACTATTGGCAGGGTTTC 60.135 52.381 0.00 0.00 0.00 2.78
860 874 0.887933 CGCAACTATTGGCAGGGTTT 59.112 50.000 0.00 0.00 0.00 3.27
861 875 0.251165 ACGCAACTATTGGCAGGGTT 60.251 50.000 0.00 0.00 0.00 4.11
862 876 0.960364 CACGCAACTATTGGCAGGGT 60.960 55.000 0.00 0.00 0.00 4.34
863 877 0.676466 TCACGCAACTATTGGCAGGG 60.676 55.000 0.00 0.00 0.00 4.45
962 976 2.202756 GCGGCGAAGGAGAACGAT 60.203 61.111 12.98 0.00 0.00 3.73
983 997 3.951769 ATTGCCCCACTGGAGCAGC 62.952 63.158 4.24 0.00 38.51 5.25
984 998 2.050350 CATTGCCCCACTGGAGCAG 61.050 63.158 4.24 0.00 38.51 4.24
985 999 2.036098 CATTGCCCCACTGGAGCA 59.964 61.111 0.00 0.00 36.44 4.26
986 1000 3.455469 GCATTGCCCCACTGGAGC 61.455 66.667 0.00 0.00 35.39 4.70
987 1001 1.751927 GAGCATTGCCCCACTGGAG 60.752 63.158 4.70 0.00 35.39 3.86
988 1002 2.356278 GAGCATTGCCCCACTGGA 59.644 61.111 4.70 0.00 35.39 3.86
989 1003 3.136123 CGAGCATTGCCCCACTGG 61.136 66.667 4.70 0.00 37.09 4.00
990 1004 3.818787 GCGAGCATTGCCCCACTG 61.819 66.667 4.70 0.00 40.55 3.66
1012 1026 2.819595 CATCGTCCGTGGGCTTGG 60.820 66.667 0.00 0.00 0.00 3.61
1013 1027 2.100631 GTCATCGTCCGTGGGCTTG 61.101 63.158 0.00 0.00 0.00 4.01
1014 1028 2.264794 GTCATCGTCCGTGGGCTT 59.735 61.111 0.00 0.00 0.00 4.35
1192 1206 0.767446 TGGTCTTTGGTTACCCCCGA 60.767 55.000 0.00 0.00 34.69 5.14
1199 1213 6.783708 AAACTGAAACATGGTCTTTGGTTA 57.216 33.333 0.00 0.00 0.00 2.85
1201 1215 5.660460 GAAAACTGAAACATGGTCTTTGGT 58.340 37.500 0.00 0.00 0.00 3.67
1303 1329 2.774799 CGCTAGGGTTTGGCCATGC 61.775 63.158 6.09 1.64 39.65 4.06
1307 1333 0.756903 TATCTCGCTAGGGTTTGGCC 59.243 55.000 6.70 0.00 0.00 5.36
1357 1383 2.624674 AAACCACAGCAGGCCGAGTT 62.625 55.000 0.00 0.00 0.00 3.01
1358 1384 3.120086 AAACCACAGCAGGCCGAGT 62.120 57.895 0.00 0.00 0.00 4.18
1363 1389 2.328099 CGAGGAAACCACAGCAGGC 61.328 63.158 0.00 0.00 0.00 4.85
1379 1405 4.201589 GCTCGATTTTCTCAACGAAATCGA 60.202 41.667 23.77 23.77 42.41 3.59
1387 1413 5.597813 TCTTTGAGCTCGATTTTCTCAAC 57.402 39.130 9.64 0.00 43.86 3.18
1389 1415 6.873605 TGTAATCTTTGAGCTCGATTTTCTCA 59.126 34.615 17.08 10.69 35.30 3.27
1390 1416 7.295952 TGTAATCTTTGAGCTCGATTTTCTC 57.704 36.000 17.08 8.97 0.00 2.87
1395 1421 5.757320 CAGGATGTAATCTTTGAGCTCGATT 59.243 40.000 16.38 16.38 44.71 3.34
1397 1423 4.442052 CCAGGATGTAATCTTTGAGCTCGA 60.442 45.833 9.64 3.88 44.71 4.04
1464 1490 2.355108 GGTCTGCACATCTGCCTTCTTA 60.355 50.000 0.00 0.00 43.51 2.10
1476 1502 1.227527 CGTCTTGGTGGTCTGCACA 60.228 57.895 0.00 0.00 0.00 4.57
1551 1577 1.152830 GGCCCCCTCTTGTGTTTCA 59.847 57.895 0.00 0.00 0.00 2.69
1616 1648 1.386533 GCACTGCATAGCAAGGATGT 58.613 50.000 5.71 0.00 38.41 3.06
1623 1655 1.078214 GACTGGGCACTGCATAGCA 60.078 57.895 11.92 0.00 36.92 3.49
1634 1666 0.676151 CTCTGCCTTGAAGACTGGGC 60.676 60.000 0.00 0.00 44.31 5.36
1635 1667 0.689623 ACTCTGCCTTGAAGACTGGG 59.310 55.000 0.00 0.00 0.00 4.45
1638 1677 3.057174 CGTAGAACTCTGCCTTGAAGACT 60.057 47.826 0.00 0.00 0.00 3.24
1688 1727 9.903682 GCTGCATATCTTCAATAATGTTTACAT 57.096 29.630 0.00 0.00 38.41 2.29
1690 1729 8.571336 AGGCTGCATATCTTCAATAATGTTTAC 58.429 33.333 0.50 0.00 0.00 2.01
1694 1733 5.048224 GCAGGCTGCATATCTTCAATAATGT 60.048 40.000 33.33 0.00 44.26 2.71
1956 2196 7.244166 AGAAGAGTTGATAAATTCGATGCAG 57.756 36.000 0.00 0.00 0.00 4.41
2097 2337 3.013921 TGCTCAAATTAATCCACGGTCC 58.986 45.455 0.00 0.00 0.00 4.46
2114 2354 5.300539 TCAGGTGAAGTGACTATATCTGCTC 59.699 44.000 4.86 0.00 0.00 4.26
2119 2359 5.278071 CGGTCTCAGGTGAAGTGACTATATC 60.278 48.000 0.00 0.00 31.94 1.63
2120 2360 4.580995 CGGTCTCAGGTGAAGTGACTATAT 59.419 45.833 0.00 0.00 31.94 0.86
2121 2361 3.945921 CGGTCTCAGGTGAAGTGACTATA 59.054 47.826 0.00 0.00 31.94 1.31
2122 2362 2.755655 CGGTCTCAGGTGAAGTGACTAT 59.244 50.000 0.00 0.00 31.94 2.12
2127 2367 0.668706 CTGCGGTCTCAGGTGAAGTG 60.669 60.000 0.00 0.00 0.00 3.16
2134 2374 2.743928 GGTTGCTGCGGTCTCAGG 60.744 66.667 0.00 0.00 34.74 3.86
2135 2375 2.031012 TGGTTGCTGCGGTCTCAG 59.969 61.111 0.00 0.00 37.15 3.35
2143 2383 9.523755 GATAAACTTATCTCAGCTGGTTGCTGC 62.524 44.444 15.13 0.00 46.39 5.25
2145 2385 5.819901 GATAAACTTATCTCAGCTGGTTGCT 59.180 40.000 15.13 0.25 43.20 3.91
2146 2386 5.819901 AGATAAACTTATCTCAGCTGGTTGC 59.180 40.000 15.13 3.04 44.93 4.17
2147 2387 7.856145 AAGATAAACTTATCTCAGCTGGTTG 57.144 36.000 15.13 4.92 46.80 3.77
2149 2389 9.771534 GATAAAGATAAACTTATCTCAGCTGGT 57.228 33.333 15.13 0.00 46.80 4.00
2150 2390 9.995003 AGATAAAGATAAACTTATCTCAGCTGG 57.005 33.333 15.13 4.77 46.80 4.85
2177 2417 9.226606 TCGGAGAACTTACAAATTATCAACAAT 57.773 29.630 0.00 0.00 0.00 2.71
2178 2418 8.610248 TCGGAGAACTTACAAATTATCAACAA 57.390 30.769 0.00 0.00 0.00 2.83
2179 2419 8.092068 TCTCGGAGAACTTACAAATTATCAACA 58.908 33.333 4.96 0.00 34.09 3.33
2180 2420 8.475331 TCTCGGAGAACTTACAAATTATCAAC 57.525 34.615 4.96 0.00 34.09 3.18
2181 2421 9.314321 GATCTCGGAGAACTTACAAATTATCAA 57.686 33.333 12.40 0.00 34.09 2.57
2182 2422 7.926555 GGATCTCGGAGAACTTACAAATTATCA 59.073 37.037 12.40 0.00 34.09 2.15
2183 2423 8.145122 AGGATCTCGGAGAACTTACAAATTATC 58.855 37.037 12.40 0.08 34.09 1.75
2184 2424 8.024145 AGGATCTCGGAGAACTTACAAATTAT 57.976 34.615 12.40 0.00 34.09 1.28
2185 2425 7.419711 AGGATCTCGGAGAACTTACAAATTA 57.580 36.000 12.40 0.00 34.09 1.40
2186 2426 6.301169 AGGATCTCGGAGAACTTACAAATT 57.699 37.500 12.40 0.00 34.09 1.82
2187 2427 5.941555 AGGATCTCGGAGAACTTACAAAT 57.058 39.130 12.40 0.00 34.09 2.32
2188 2428 7.093465 ACAATAGGATCTCGGAGAACTTACAAA 60.093 37.037 12.40 0.00 34.09 2.83
2189 2429 6.380274 ACAATAGGATCTCGGAGAACTTACAA 59.620 38.462 12.40 0.00 34.09 2.41
2190 2430 5.892119 ACAATAGGATCTCGGAGAACTTACA 59.108 40.000 12.40 0.00 34.09 2.41
2191 2431 6.039493 TCACAATAGGATCTCGGAGAACTTAC 59.961 42.308 12.40 0.00 34.09 2.34
2192 2432 6.127101 TCACAATAGGATCTCGGAGAACTTA 58.873 40.000 12.40 10.48 34.09 2.24
2193 2433 4.956700 TCACAATAGGATCTCGGAGAACTT 59.043 41.667 12.40 8.44 34.09 2.66
2194 2434 4.537751 TCACAATAGGATCTCGGAGAACT 58.462 43.478 12.40 14.92 34.09 3.01
2195 2435 4.920640 TCACAATAGGATCTCGGAGAAC 57.079 45.455 12.40 9.34 34.09 3.01
2196 2436 5.932619 TTTCACAATAGGATCTCGGAGAA 57.067 39.130 12.40 0.00 34.09 2.87
2197 2437 5.363868 ACATTTCACAATAGGATCTCGGAGA 59.636 40.000 10.62 10.62 0.00 3.71
2198 2438 5.464722 CACATTTCACAATAGGATCTCGGAG 59.535 44.000 0.00 0.00 0.00 4.63
2199 2439 5.359756 CACATTTCACAATAGGATCTCGGA 58.640 41.667 0.00 0.00 0.00 4.55
2200 2440 4.512944 CCACATTTCACAATAGGATCTCGG 59.487 45.833 0.00 0.00 0.00 4.63
2201 2441 5.007039 CACCACATTTCACAATAGGATCTCG 59.993 44.000 0.00 0.00 0.00 4.04
2202 2442 6.115446 TCACCACATTTCACAATAGGATCTC 58.885 40.000 0.00 0.00 0.00 2.75
2203 2443 6.065976 TCACCACATTTCACAATAGGATCT 57.934 37.500 0.00 0.00 0.00 2.75
2204 2444 6.757897 TTCACCACATTTCACAATAGGATC 57.242 37.500 0.00 0.00 0.00 3.36
2205 2445 6.721208 AGTTTCACCACATTTCACAATAGGAT 59.279 34.615 0.00 0.00 0.00 3.24
2206 2446 6.068010 AGTTTCACCACATTTCACAATAGGA 58.932 36.000 0.00 0.00 0.00 2.94
2207 2447 6.331369 AGTTTCACCACATTTCACAATAGG 57.669 37.500 0.00 0.00 0.00 2.57
2208 2448 9.398170 CTAAAGTTTCACCACATTTCACAATAG 57.602 33.333 0.00 0.00 0.00 1.73
2209 2449 7.865385 GCTAAAGTTTCACCACATTTCACAATA 59.135 33.333 0.00 0.00 0.00 1.90
2210 2450 6.701400 GCTAAAGTTTCACCACATTTCACAAT 59.299 34.615 0.00 0.00 0.00 2.71
2223 2463 7.873739 ATACTGCAATTTGCTAAAGTTTCAC 57.126 32.000 21.19 0.00 45.31 3.18
2240 2480 9.665719 TTTCAGAATAACTTGACATATACTGCA 57.334 29.630 0.00 0.00 0.00 4.41
2325 2565 1.542915 CTGGTTTTGGGATCTGCACAG 59.457 52.381 0.00 0.00 0.00 3.66
2340 2580 4.278310 AGGCTGACTAAACAAAACTGGTT 58.722 39.130 0.00 0.00 0.00 3.67
2371 2615 6.430000 TGTCCTACTTGATAAGGAAAAGCAAC 59.570 38.462 0.00 0.00 43.44 4.17
2375 2619 9.454859 AGAATTGTCCTACTTGATAAGGAAAAG 57.545 33.333 0.90 0.00 41.39 2.27
2400 2644 9.142515 TGTACGTTGTTTGGTCTAACAATATAG 57.857 33.333 12.21 8.21 46.29 1.31
2403 2647 7.208777 TCTGTACGTTGTTTGGTCTAACAATA 58.791 34.615 12.21 2.19 46.29 1.90
2404 2648 6.050432 TCTGTACGTTGTTTGGTCTAACAAT 58.950 36.000 12.21 2.95 46.29 2.71
2411 2655 3.244579 GTGTCTCTGTACGTTGTTTGGTC 59.755 47.826 0.00 0.00 0.00 4.02
2425 2669 6.870965 ACTTAGCAAGTGAAATAGTGTCTCTG 59.129 38.462 1.44 0.00 41.01 3.35
2458 2702 7.265673 CAGTAAATTCCTGCACTAACTAGCTA 58.734 38.462 0.00 0.00 0.00 3.32
2474 4570 8.853345 CAATGCCAATATATTCGCAGTAAATTC 58.147 33.333 20.12 0.00 37.32 2.17
2480 4576 5.065914 ACTCAATGCCAATATATTCGCAGT 58.934 37.500 20.12 16.02 37.32 4.40
2483 4579 5.625251 CAGACTCAATGCCAATATATTCGC 58.375 41.667 7.99 7.99 0.00 4.70
2484 4580 5.179929 TGCAGACTCAATGCCAATATATTCG 59.820 40.000 0.00 0.00 43.18 3.34
2489 4585 3.067742 GCTTGCAGACTCAATGCCAATAT 59.932 43.478 0.00 0.00 43.18 1.28
2497 4593 4.645535 TCTTGTTAGCTTGCAGACTCAAT 58.354 39.130 0.00 0.00 0.00 2.57
2531 4627 3.198635 TGCCAAGTAAATCTCCCTCTGAG 59.801 47.826 0.00 0.00 42.90 3.35
2532 4628 3.055094 GTGCCAAGTAAATCTCCCTCTGA 60.055 47.826 0.00 0.00 0.00 3.27
2533 4629 3.274288 GTGCCAAGTAAATCTCCCTCTG 58.726 50.000 0.00 0.00 0.00 3.35
2534 4630 2.912956 TGTGCCAAGTAAATCTCCCTCT 59.087 45.455 0.00 0.00 0.00 3.69
2535 4631 3.274288 CTGTGCCAAGTAAATCTCCCTC 58.726 50.000 0.00 0.00 0.00 4.30
2539 4635 4.082571 ACATTGCTGTGCCAAGTAAATCTC 60.083 41.667 0.00 0.00 33.22 2.75
2574 4670 4.657436 AAAAGTGCAACCATAAACCGAA 57.343 36.364 0.00 0.00 37.80 4.30
2581 4677 5.241949 ACGGAATACAAAAAGTGCAACCATA 59.758 36.000 0.00 0.00 37.80 2.74
2726 4842 5.047377 AGGAATTTGAACCAAATGCGTATGT 60.047 36.000 5.78 0.00 42.32 2.29
2732 4848 4.925646 GTGAGAGGAATTTGAACCAAATGC 59.074 41.667 5.78 4.11 42.32 3.56
2747 4863 1.982660 AACGTGAGACAGTGAGAGGA 58.017 50.000 0.00 0.00 0.00 3.71
2754 4870 3.383825 AGGTTACAGAAACGTGAGACAGT 59.616 43.478 0.00 0.00 39.13 3.55
2766 4882 6.335471 TCATTCGTAGTTCAGGTTACAGAA 57.665 37.500 0.00 0.00 0.00 3.02
2768 4884 5.103000 CCTCATTCGTAGTTCAGGTTACAG 58.897 45.833 0.00 0.00 0.00 2.74
2772 4888 4.562963 GGTTCCTCATTCGTAGTTCAGGTT 60.563 45.833 0.00 0.00 0.00 3.50
2774 4890 3.195825 AGGTTCCTCATTCGTAGTTCAGG 59.804 47.826 0.00 0.00 0.00 3.86
2779 4895 5.262804 ACTAGAAGGTTCCTCATTCGTAGT 58.737 41.667 0.00 0.00 41.08 2.73
2789 4905 6.954684 TGATTCTACAGAACTAGAAGGTTCCT 59.045 38.462 0.00 0.00 44.56 3.36
2822 4942 4.647424 TTCTTTTTGTAGGCCACACTTG 57.353 40.909 5.01 0.00 36.69 3.16
2847 4967 4.090354 CGCTGAGGTTTTTCGTCGTATTTA 59.910 41.667 0.00 0.00 34.12 1.40
2868 4988 1.792006 ACTGTAAACACAGCTACCGC 58.208 50.000 4.73 0.00 41.19 5.68
2869 4989 3.128349 ACAACTGTAAACACAGCTACCG 58.872 45.455 4.73 0.00 41.19 4.02
2875 4995 4.447724 ACATAGCGACAACTGTAAACACAG 59.552 41.667 3.30 3.30 43.03 3.66
2884 5004 5.597813 AAGAGAAAACATAGCGACAACTG 57.402 39.130 0.00 0.00 0.00 3.16
2886 5006 5.179555 AGGAAAGAGAAAACATAGCGACAAC 59.820 40.000 0.00 0.00 0.00 3.32
2927 5047 6.183360 CCATGGATGTCATAATTTCGTGGAAA 60.183 38.462 5.56 0.00 33.73 3.13
2928 5048 5.299028 CCATGGATGTCATAATTTCGTGGAA 59.701 40.000 5.56 0.00 34.12 3.53
2929 5049 4.821260 CCATGGATGTCATAATTTCGTGGA 59.179 41.667 5.56 0.00 34.12 4.02
2930 5050 4.580167 ACCATGGATGTCATAATTTCGTGG 59.420 41.667 21.47 0.00 34.12 4.94
2931 5051 5.066375 ACACCATGGATGTCATAATTTCGTG 59.934 40.000 21.47 2.26 34.12 4.35
2932 5052 5.192927 ACACCATGGATGTCATAATTTCGT 58.807 37.500 21.47 0.00 34.12 3.85
2933 5053 5.756195 ACACCATGGATGTCATAATTTCG 57.244 39.130 21.47 0.00 34.12 3.46
2934 5054 7.716998 AGAGTACACCATGGATGTCATAATTTC 59.283 37.037 21.47 9.22 34.12 2.17
2935 5055 7.577303 AGAGTACACCATGGATGTCATAATTT 58.423 34.615 21.47 0.00 34.12 1.82
2965 5085 8.673711 GCCAATATACAGTTACTCATTTGTTGA 58.326 33.333 0.00 0.00 0.00 3.18
3027 5147 9.793259 ACTGAACTCTTTATTTGGAAACTGATA 57.207 29.630 0.00 0.00 0.00 2.15
3028 5148 8.571336 CACTGAACTCTTTATTTGGAAACTGAT 58.429 33.333 0.00 0.00 0.00 2.90
3029 5149 7.773224 TCACTGAACTCTTTATTTGGAAACTGA 59.227 33.333 0.00 0.00 0.00 3.41
3030 5150 7.930217 TCACTGAACTCTTTATTTGGAAACTG 58.070 34.615 0.00 0.00 0.00 3.16
3031 5151 8.697507 ATCACTGAACTCTTTATTTGGAAACT 57.302 30.769 0.00 0.00 0.00 2.66
3050 5170 9.676195 CCGAATGCTAGAGATATATAATCACTG 57.324 37.037 0.00 0.00 0.00 3.66
3051 5171 8.855110 CCCGAATGCTAGAGATATATAATCACT 58.145 37.037 0.00 0.00 0.00 3.41
3052 5172 8.634444 ACCCGAATGCTAGAGATATATAATCAC 58.366 37.037 0.00 0.00 0.00 3.06
3053 5173 8.768501 ACCCGAATGCTAGAGATATATAATCA 57.231 34.615 0.00 0.00 0.00 2.57
3054 5174 8.301002 GGACCCGAATGCTAGAGATATATAATC 58.699 40.741 0.00 0.00 0.00 1.75
3055 5175 7.233757 GGGACCCGAATGCTAGAGATATATAAT 59.766 40.741 0.00 0.00 0.00 1.28
3056 5176 6.550108 GGGACCCGAATGCTAGAGATATATAA 59.450 42.308 0.00 0.00 0.00 0.98
3057 5177 6.069331 GGGACCCGAATGCTAGAGATATATA 58.931 44.000 0.00 0.00 0.00 0.86
3058 5178 4.896482 GGGACCCGAATGCTAGAGATATAT 59.104 45.833 0.00 0.00 0.00 0.86
3059 5179 4.264217 TGGGACCCGAATGCTAGAGATATA 60.264 45.833 5.91 0.00 0.00 0.86
3060 5180 3.100671 GGGACCCGAATGCTAGAGATAT 58.899 50.000 0.00 0.00 0.00 1.63
3061 5181 2.158370 TGGGACCCGAATGCTAGAGATA 60.158 50.000 5.91 0.00 0.00 1.98
3062 5182 1.343069 GGGACCCGAATGCTAGAGAT 58.657 55.000 0.00 0.00 0.00 2.75
3063 5183 0.032515 TGGGACCCGAATGCTAGAGA 60.033 55.000 5.91 0.00 0.00 3.10
3064 5184 0.830648 TTGGGACCCGAATGCTAGAG 59.169 55.000 5.91 0.00 0.00 2.43
3065 5185 1.416401 GATTGGGACCCGAATGCTAGA 59.584 52.381 3.96 0.00 0.00 2.43
3066 5186 1.140852 TGATTGGGACCCGAATGCTAG 59.859 52.381 3.96 0.00 0.00 3.42
3067 5187 1.134220 GTGATTGGGACCCGAATGCTA 60.134 52.381 3.96 0.00 0.00 3.49
3068 5188 0.394352 GTGATTGGGACCCGAATGCT 60.394 55.000 3.96 0.00 0.00 3.79
3069 5189 1.384222 GGTGATTGGGACCCGAATGC 61.384 60.000 3.96 0.00 0.00 3.56
3070 5190 0.255890 AGGTGATTGGGACCCGAATG 59.744 55.000 3.96 0.00 33.51 2.67
3071 5191 0.999712 AAGGTGATTGGGACCCGAAT 59.000 50.000 3.96 6.23 33.51 3.34
3072 5192 1.659022 TAAGGTGATTGGGACCCGAA 58.341 50.000 3.96 0.91 33.51 4.30
3073 5193 3.402833 TAAGGTGATTGGGACCCGA 57.597 52.632 1.80 1.80 33.51 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.