Multiple sequence alignment - TraesCS7B01G421500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G421500 chr7B 100.000 2521 0 0 1 2521 690418125 690420645 0.000000e+00 4656.0
1 TraesCS7B01G421500 chr7B 84.000 900 126 14 117 1007 690257313 690258203 0.000000e+00 848.0
2 TraesCS7B01G421500 chr7B 91.597 595 28 2 1862 2434 690492629 690493223 0.000000e+00 802.0
3 TraesCS7B01G421500 chr7B 90.676 547 43 7 1 546 690301553 690302092 0.000000e+00 721.0
4 TraesCS7B01G421500 chr7B 88.471 425 48 1 1005 1429 690258293 690258716 1.730000e-141 512.0
5 TraesCS7B01G421500 chr7B 86.124 418 48 6 598 1007 690302090 690302505 2.300000e-120 442.0
6 TraesCS7B01G421500 chr7B 100.000 194 0 0 1674 1867 675833345 675833538 2.380000e-95 359.0
7 TraesCS7B01G421500 chr7B 100.000 194 0 0 1674 1867 675849991 675850184 2.380000e-95 359.0
8 TraesCS7B01G421500 chr7B 100.000 193 0 0 1675 1867 618450288 618450480 8.580000e-95 357.0
9 TraesCS7B01G421500 chr7B 98.969 194 2 0 1674 1867 691275944 691275751 5.160000e-92 348.0
10 TraesCS7B01G421500 chr7B 98.469 196 3 0 1674 1869 695947655 695947460 1.860000e-91 346.0
11 TraesCS7B01G421500 chr7B 98.469 196 3 0 1673 1868 697582840 697582645 1.860000e-91 346.0
12 TraesCS7B01G421500 chr7B 85.714 329 43 4 1005 1330 690302595 690302922 6.680000e-91 344.0
13 TraesCS7B01G421500 chr7B 95.506 89 3 1 2434 2521 657493849 657493761 9.400000e-30 141.0
14 TraesCS7B01G421500 chr7B 86.047 86 9 2 1520 1602 690258828 690258913 3.450000e-14 89.8
15 TraesCS7B01G421500 chr7D 89.261 1015 96 11 1 1007 606319792 606320801 0.000000e+00 1258.0
16 TraesCS7B01G421500 chr7D 85.419 1015 134 12 1 1006 606536590 606537599 0.000000e+00 1042.0
17 TraesCS7B01G421500 chr7D 85.108 1014 137 12 1 1007 606341150 606342156 0.000000e+00 1024.0
18 TraesCS7B01G421500 chr7D 86.122 526 58 4 1005 1526 606537690 606538204 1.020000e-153 553.0
19 TraesCS7B01G421500 chr7D 88.158 456 46 6 1005 1454 606320891 606321344 1.030000e-148 536.0
20 TraesCS7B01G421500 chr7D 88.941 425 47 0 1005 1429 606342246 606342670 2.220000e-145 525.0
21 TraesCS7B01G421500 chr7D 86.708 489 31 11 1862 2344 606538375 606538835 1.730000e-141 512.0
22 TraesCS7B01G421500 chr7D 93.590 78 5 0 2351 2428 606539989 606540066 1.580000e-22 117.0
23 TraesCS7B01G421500 chr7D 86.420 81 8 2 1525 1602 606342803 606342883 4.470000e-13 86.1
24 TraesCS7B01G421500 chr7D 83.562 73 8 4 1532 1602 606321434 606321504 5.820000e-07 65.8
25 TraesCS7B01G421500 chrUn 90.011 891 83 6 1 890 83338427 83339312 0.000000e+00 1147.0
26 TraesCS7B01G421500 chrUn 82.956 1015 154 10 1 1007 83317024 83318027 0.000000e+00 898.0
27 TraesCS7B01G421500 chrUn 91.047 592 31 2 1865 2434 245474633 245474042 0.000000e+00 780.0
28 TraesCS7B01G421500 chrUn 90.252 595 35 3 1862 2434 273206937 273207530 0.000000e+00 756.0
29 TraesCS7B01G421500 chrUn 92.025 489 33 3 1862 2344 83339885 83340373 0.000000e+00 682.0
30 TraesCS7B01G421500 chrUn 90.428 491 34 9 1872 2351 83318820 83319308 3.540000e-178 634.0
31 TraesCS7B01G421500 chrUn 85.417 528 57 8 1005 1526 83318117 83318630 4.770000e-147 531.0
32 TraesCS7B01G421500 chrUn 85.849 424 47 5 1105 1526 83339302 83339714 2.980000e-119 438.0
33 TraesCS7B01G421500 chrUn 92.308 78 6 0 2351 2428 391247856 391247933 7.370000e-21 111.0
34 TraesCS7B01G421500 chrUn 92.308 78 6 0 2351 2428 478397506 478397583 7.370000e-21 111.0
35 TraesCS7B01G421500 chrUn 92.000 50 4 0 1349 1398 324826382 324826333 1.250000e-08 71.3
36 TraesCS7B01G421500 chrUn 85.507 69 5 4 2365 2428 83319343 83319411 1.620000e-07 67.6
37 TraesCS7B01G421500 chr7A 85.344 1003 131 14 1 992 698590486 698591483 0.000000e+00 1024.0
38 TraesCS7B01G421500 chr7A 92.025 489 31 4 1862 2344 698592273 698592759 0.000000e+00 680.0
39 TraesCS7B01G421500 chr7A 84.411 526 61 11 1005 1526 698591594 698592102 4.840000e-137 497.0
40 TraesCS7B01G421500 chr7A 92.308 78 6 0 2351 2428 698593246 698593323 7.370000e-21 111.0
41 TraesCS7B01G421500 chr2B 98.469 196 3 0 1675 1870 49690529 49690724 1.860000e-91 346.0
42 TraesCS7B01G421500 chr1B 98.469 196 3 0 1674 1869 34697320 34697125 1.860000e-91 346.0
43 TraesCS7B01G421500 chr1B 98.469 196 3 0 1674 1869 588495261 588495066 1.860000e-91 346.0
44 TraesCS7B01G421500 chr1B 96.629 89 2 1 2434 2521 550427702 550427614 2.020000e-31 147.0
45 TraesCS7B01G421500 chr1B 92.079 101 5 3 2424 2521 627229084 627229184 3.380000e-29 139.0
46 TraesCS7B01G421500 chr6B 96.667 90 3 0 2432 2521 633871725 633871814 1.560000e-32 150.0
47 TraesCS7B01G421500 chr6B 93.750 96 5 1 2427 2521 689590820 689590725 2.610000e-30 143.0
48 TraesCS7B01G421500 chr5B 95.699 93 3 1 2430 2521 567743 567835 5.620000e-32 148.0
49 TraesCS7B01G421500 chr5B 91.919 99 6 2 2423 2521 547996063 547995967 1.220000e-28 137.0
50 TraesCS7B01G421500 chr4A 96.591 88 3 0 2434 2521 699571930 699572017 2.020000e-31 147.0
51 TraesCS7B01G421500 chr4A 97.647 85 2 0 2435 2519 716303576 716303660 2.020000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G421500 chr7B 690418125 690420645 2520 False 4656.000000 4656 100.000000 1 2521 1 chr7B.!!$F4 2520
1 TraesCS7B01G421500 chr7B 690492629 690493223 594 False 802.000000 802 91.597000 1862 2434 1 chr7B.!!$F5 572
2 TraesCS7B01G421500 chr7B 690301553 690302922 1369 False 502.333333 721 87.504667 1 1330 3 chr7B.!!$F7 1329
3 TraesCS7B01G421500 chr7B 690257313 690258913 1600 False 483.266667 848 86.172667 117 1602 3 chr7B.!!$F6 1485
4 TraesCS7B01G421500 chr7D 606319792 606321504 1712 False 619.933333 1258 86.993667 1 1602 3 chr7D.!!$F1 1601
5 TraesCS7B01G421500 chr7D 606536590 606540066 3476 False 556.000000 1042 87.959750 1 2428 4 chr7D.!!$F3 2427
6 TraesCS7B01G421500 chr7D 606341150 606342883 1733 False 545.033333 1024 86.823000 1 1602 3 chr7D.!!$F2 1601
7 TraesCS7B01G421500 chrUn 245474042 245474633 591 True 780.000000 780 91.047000 1865 2434 1 chrUn.!!$R1 569
8 TraesCS7B01G421500 chrUn 273206937 273207530 593 False 756.000000 756 90.252000 1862 2434 1 chrUn.!!$F1 572
9 TraesCS7B01G421500 chrUn 83338427 83340373 1946 False 755.666667 1147 89.295000 1 2344 3 chrUn.!!$F5 2343
10 TraesCS7B01G421500 chrUn 83317024 83319411 2387 False 532.650000 898 86.077000 1 2428 4 chrUn.!!$F4 2427
11 TraesCS7B01G421500 chr7A 698590486 698593323 2837 False 578.000000 1024 88.522000 1 2428 4 chr7A.!!$F1 2427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 927 0.104672 TGGGTGAAGTCTTCCCCTCA 60.105 55.0 26.68 16.01 39.5 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2160 2406 0.036164 AAGCATAACAGGCACACGGA 59.964 50.0 0.0 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.496870 CCCAGTTGCTGAAGTCCTTTAGT 60.497 47.826 0.00 0.00 32.44 2.24
41 42 5.241728 GCTGAAGTCCTTTAGTTTTGATGGT 59.758 40.000 1.46 0.00 0.00 3.55
62 63 4.344865 GGGCCAGCTTTCCACCGA 62.345 66.667 4.39 0.00 0.00 4.69
107 108 1.981256 AACAAGAACGCCCATCAACT 58.019 45.000 0.00 0.00 0.00 3.16
115 116 1.033746 CGCCCATCAACTCCAGCAAT 61.034 55.000 0.00 0.00 0.00 3.56
334 335 5.010012 GTGCAATAATTTGGGACAGGGATAG 59.990 44.000 0.00 0.00 42.39 2.08
391 392 0.321122 CGAGCTGGAACTGGCTTTCT 60.321 55.000 0.00 0.00 38.06 2.52
395 396 1.878102 GCTGGAACTGGCTTTCTTCGA 60.878 52.381 0.00 0.00 0.00 3.71
419 420 3.236816 GTGCATTGACCAGAACAAATCG 58.763 45.455 0.00 0.00 0.00 3.34
478 479 3.454587 TTGCTCGGTCGTTGTGGCT 62.455 57.895 0.00 0.00 0.00 4.75
578 590 7.871973 CCAAATCAATCCAAAGTGACATACAAA 59.128 33.333 0.00 0.00 31.30 2.83
672 690 4.148079 TGTTCAAAGCATGGTTGGTGATA 58.852 39.130 11.56 2.42 32.86 2.15
673 691 4.771577 TGTTCAAAGCATGGTTGGTGATAT 59.228 37.500 11.56 0.00 32.86 1.63
682 700 1.148310 GTTGGTGATATCCCGATGCG 58.852 55.000 0.00 0.00 0.00 4.73
722 740 1.349688 ACTAACAACCTGGATCGGCAA 59.650 47.619 0.00 0.00 0.00 4.52
732 750 2.874701 CTGGATCGGCAAATCGAGATTT 59.125 45.455 5.32 5.32 42.69 2.17
738 756 6.238374 GGATCGGCAAATCGAGATTTCTAAAA 60.238 38.462 7.99 0.00 42.69 1.52
766 784 1.339438 ATGTCATGGACAGTGGACTGC 60.339 52.381 6.70 0.36 46.04 4.40
781 799 1.592081 GACTGCGAGATGTCATGAAGC 59.408 52.381 0.00 0.00 33.75 3.86
821 839 4.082625 GCATGTCCATGATGTCTCAACAAA 60.083 41.667 11.35 0.00 41.20 2.83
840 858 0.180406 ATGCTAGTTTGCCTACGGGG 59.820 55.000 0.00 0.00 38.36 5.73
843 864 1.415289 GCTAGTTTGCCTACGGGGTAT 59.585 52.381 0.00 0.00 37.43 2.73
844 865 2.805657 GCTAGTTTGCCTACGGGGTATG 60.806 54.545 0.00 0.00 37.43 2.39
885 906 1.616921 CATGGAGAGGTGCCCCAAT 59.383 57.895 0.00 0.00 33.15 3.16
906 927 0.104672 TGGGTGAAGTCTTCCCCTCA 60.105 55.000 26.68 16.01 39.50 3.86
946 968 1.674057 CTGGAGACCTTCTGGCGTT 59.326 57.895 0.00 0.00 36.63 4.84
1012 1132 1.938577 CAGCTTCAATGATGGAGACCG 59.061 52.381 0.00 0.00 33.56 4.79
1029 1149 0.250234 CCGTCCACATCATCCACTGT 59.750 55.000 0.00 0.00 0.00 3.55
1041 1161 0.108585 TCCACTGTGGAAACCTCAGC 59.891 55.000 26.54 0.00 45.00 4.26
1088 1211 4.351111 ATGGTACCCAGAGGAAATATCCAC 59.649 45.833 10.07 0.00 42.26 4.02
1153 1276 2.981909 TGCCAGAGTTGCAGCAGC 60.982 61.111 2.55 0.00 42.57 5.25
1191 1314 1.371558 GGCACCGAACCTCAAGACT 59.628 57.895 0.00 0.00 0.00 3.24
1248 1371 3.633116 GTGGTGGGTGCCCGTAGT 61.633 66.667 2.44 0.00 39.42 2.73
1305 1428 2.887889 CGTTTGGGACGCGCTTGAA 61.888 57.895 5.73 0.00 45.86 2.69
1398 1521 1.007721 AGGGTCTCTGTGCTCAGGTAT 59.992 52.381 15.39 0.00 41.59 2.73
1413 1536 5.278758 GCTCAGGTATTCTCTCCTACATGTC 60.279 48.000 0.00 0.00 32.88 3.06
1422 1545 4.115516 CTCTCCTACATGTCACAAATCCG 58.884 47.826 0.00 0.00 0.00 4.18
1458 1586 5.503927 ACTGCCAAGATCATACTCAATGTT 58.496 37.500 0.00 0.00 36.89 2.71
1459 1587 6.653020 ACTGCCAAGATCATACTCAATGTTA 58.347 36.000 0.00 0.00 36.89 2.41
1460 1588 6.765036 ACTGCCAAGATCATACTCAATGTTAG 59.235 38.462 0.00 0.00 36.89 2.34
1461 1589 5.528690 TGCCAAGATCATACTCAATGTTAGC 59.471 40.000 0.00 0.00 36.89 3.09
1462 1590 5.762218 GCCAAGATCATACTCAATGTTAGCT 59.238 40.000 0.00 0.00 36.89 3.32
1463 1591 6.931281 GCCAAGATCATACTCAATGTTAGCTA 59.069 38.462 0.00 0.00 36.89 3.32
1464 1592 7.095439 GCCAAGATCATACTCAATGTTAGCTAC 60.095 40.741 0.00 0.00 36.89 3.58
1465 1593 8.147058 CCAAGATCATACTCAATGTTAGCTACT 58.853 37.037 0.00 0.00 36.89 2.57
1469 1597 6.507900 TCATACTCAATGTTAGCTACTCAGC 58.492 40.000 0.00 0.00 41.26 4.26
1547 1732 2.501610 GGAGACCAGATGGACGCC 59.498 66.667 5.72 7.13 41.48 5.68
1555 1747 3.224324 GATGGACGCCCGCTCCTA 61.224 66.667 9.49 0.48 34.29 2.94
1562 1754 2.760385 GCCCGCTCCTACAGGTCT 60.760 66.667 0.00 0.00 36.34 3.85
1571 1763 3.357203 CTCCTACAGGTCTTGCTGTCTA 58.643 50.000 0.00 0.00 35.26 2.59
1603 1801 0.104120 GGTTTGTTGTGTGCTTCCCC 59.896 55.000 0.00 0.00 0.00 4.81
1612 1810 1.302993 GTGCTTCCCCGGTTGCTTA 60.303 57.895 0.00 0.00 0.00 3.09
1615 1813 0.526211 GCTTCCCCGGTTGCTTAAAG 59.474 55.000 0.00 0.00 0.00 1.85
1626 1824 4.237724 GGTTGCTTAAAGGAGATTTGCAC 58.762 43.478 0.00 0.00 31.59 4.57
1668 1870 2.820787 ACTCCTAGTGCTACTGTGTGTC 59.179 50.000 0.00 0.00 0.00 3.67
1669 1871 1.810755 TCCTAGTGCTACTGTGTGTCG 59.189 52.381 0.00 0.00 0.00 4.35
1670 1872 1.540267 CCTAGTGCTACTGTGTGTCGT 59.460 52.381 0.00 0.00 0.00 4.34
1671 1873 2.030185 CCTAGTGCTACTGTGTGTCGTT 60.030 50.000 0.00 0.00 0.00 3.85
1672 1874 1.852942 AGTGCTACTGTGTGTCGTTG 58.147 50.000 0.00 0.00 0.00 4.10
1673 1875 1.136305 AGTGCTACTGTGTGTCGTTGT 59.864 47.619 0.00 0.00 0.00 3.32
1674 1876 1.521423 GTGCTACTGTGTGTCGTTGTC 59.479 52.381 0.00 0.00 0.00 3.18
1675 1877 1.135333 TGCTACTGTGTGTCGTTGTCA 59.865 47.619 0.00 0.00 0.00 3.58
1676 1878 2.198406 GCTACTGTGTGTCGTTGTCAA 58.802 47.619 0.00 0.00 0.00 3.18
1677 1879 2.605818 GCTACTGTGTGTCGTTGTCAAA 59.394 45.455 0.00 0.00 0.00 2.69
1678 1880 3.302480 GCTACTGTGTGTCGTTGTCAAAG 60.302 47.826 0.00 0.00 0.00 2.77
1679 1881 2.695359 ACTGTGTGTCGTTGTCAAAGT 58.305 42.857 0.00 0.00 0.00 2.66
1680 1882 3.071479 ACTGTGTGTCGTTGTCAAAGTT 58.929 40.909 0.00 0.00 0.00 2.66
1681 1883 3.500680 ACTGTGTGTCGTTGTCAAAGTTT 59.499 39.130 0.00 0.00 0.00 2.66
1682 1884 4.023536 ACTGTGTGTCGTTGTCAAAGTTTT 60.024 37.500 0.00 0.00 0.00 2.43
1683 1885 5.179742 ACTGTGTGTCGTTGTCAAAGTTTTA 59.820 36.000 0.00 0.00 0.00 1.52
1684 1886 5.998553 TGTGTGTCGTTGTCAAAGTTTTAA 58.001 33.333 0.00 0.00 0.00 1.52
1685 1887 6.436261 TGTGTGTCGTTGTCAAAGTTTTAAA 58.564 32.000 0.00 0.00 0.00 1.52
1686 1888 7.085116 TGTGTGTCGTTGTCAAAGTTTTAAAT 58.915 30.769 0.00 0.00 0.00 1.40
1687 1889 8.235226 TGTGTGTCGTTGTCAAAGTTTTAAATA 58.765 29.630 0.00 0.00 0.00 1.40
1688 1890 8.730427 GTGTGTCGTTGTCAAAGTTTTAAATAG 58.270 33.333 0.00 0.00 0.00 1.73
1689 1891 7.429920 TGTGTCGTTGTCAAAGTTTTAAATAGC 59.570 33.333 0.00 0.00 0.00 2.97
1690 1892 6.629649 TGTCGTTGTCAAAGTTTTAAATAGCG 59.370 34.615 0.00 0.00 0.00 4.26
1691 1893 5.622041 TCGTTGTCAAAGTTTTAAATAGCGC 59.378 36.000 0.00 0.00 0.00 5.92
1692 1894 5.439694 CGTTGTCAAAGTTTTAAATAGCGCG 60.440 40.000 0.00 0.00 0.00 6.86
1693 1895 3.909574 TGTCAAAGTTTTAAATAGCGCGC 59.090 39.130 26.66 26.66 0.00 6.86
1694 1896 4.156182 GTCAAAGTTTTAAATAGCGCGCT 58.844 39.130 38.01 38.01 0.00 5.92
1695 1897 5.107026 TGTCAAAGTTTTAAATAGCGCGCTA 60.107 36.000 39.72 39.72 0.00 4.26
1696 1898 5.791480 GTCAAAGTTTTAAATAGCGCGCTAA 59.209 36.000 40.90 26.03 31.73 3.09
1697 1899 6.019152 TCAAAGTTTTAAATAGCGCGCTAAG 58.981 36.000 40.90 16.07 31.73 2.18
1698 1900 3.936661 AGTTTTAAATAGCGCGCTAAGC 58.063 40.909 40.90 27.92 43.95 3.09
1710 1912 1.856012 GCTAAGCATCTTAGCGCCG 59.144 57.895 18.95 0.00 38.12 6.46
1711 1913 1.560860 GCTAAGCATCTTAGCGCCGG 61.561 60.000 18.95 0.00 38.12 6.13
1712 1914 0.032130 CTAAGCATCTTAGCGCCGGA 59.968 55.000 5.05 0.00 40.15 5.14
1713 1915 0.249322 TAAGCATCTTAGCGCCGGAC 60.249 55.000 5.05 0.00 40.15 4.79
1714 1916 2.925162 AAGCATCTTAGCGCCGGACC 62.925 60.000 5.05 0.00 40.15 4.46
1715 1917 2.815308 CATCTTAGCGCCGGACCT 59.185 61.111 5.05 1.80 0.00 3.85
1716 1918 1.300233 CATCTTAGCGCCGGACCTC 60.300 63.158 5.05 0.00 0.00 3.85
1717 1919 1.455959 ATCTTAGCGCCGGACCTCT 60.456 57.895 5.05 0.00 0.00 3.69
1718 1920 1.043673 ATCTTAGCGCCGGACCTCTT 61.044 55.000 5.05 0.00 0.00 2.85
1719 1921 1.218316 CTTAGCGCCGGACCTCTTT 59.782 57.895 5.05 0.00 0.00 2.52
1720 1922 0.806492 CTTAGCGCCGGACCTCTTTC 60.806 60.000 5.05 0.00 0.00 2.62
1721 1923 1.537814 TTAGCGCCGGACCTCTTTCA 61.538 55.000 5.05 0.00 0.00 2.69
1722 1924 1.537814 TAGCGCCGGACCTCTTTCAA 61.538 55.000 5.05 0.00 0.00 2.69
1723 1925 1.964373 GCGCCGGACCTCTTTCAAA 60.964 57.895 5.05 0.00 0.00 2.69
1724 1926 1.305930 GCGCCGGACCTCTTTCAAAT 61.306 55.000 5.05 0.00 0.00 2.32
1725 1927 0.447801 CGCCGGACCTCTTTCAAATG 59.552 55.000 5.05 0.00 0.00 2.32
1726 1928 0.171231 GCCGGACCTCTTTCAAATGC 59.829 55.000 5.05 0.00 0.00 3.56
1727 1929 1.826385 CCGGACCTCTTTCAAATGCT 58.174 50.000 0.00 0.00 0.00 3.79
1728 1930 2.939640 GCCGGACCTCTTTCAAATGCTA 60.940 50.000 5.05 0.00 0.00 3.49
1729 1931 3.545703 CCGGACCTCTTTCAAATGCTAT 58.454 45.455 0.00 0.00 0.00 2.97
1730 1932 4.703897 CCGGACCTCTTTCAAATGCTATA 58.296 43.478 0.00 0.00 0.00 1.31
1731 1933 4.752101 CCGGACCTCTTTCAAATGCTATAG 59.248 45.833 0.00 0.00 0.00 1.31
1732 1934 4.212214 CGGACCTCTTTCAAATGCTATAGC 59.788 45.833 18.18 18.18 42.50 2.97
1733 1935 4.212214 GGACCTCTTTCAAATGCTATAGCG 59.788 45.833 19.55 5.67 45.83 4.26
1734 1936 4.770795 ACCTCTTTCAAATGCTATAGCGT 58.229 39.130 19.55 16.84 45.83 5.07
1735 1937 4.572389 ACCTCTTTCAAATGCTATAGCGTG 59.428 41.667 20.02 16.47 45.83 5.34
1736 1938 4.521943 CTCTTTCAAATGCTATAGCGTGC 58.478 43.478 20.02 0.00 45.83 5.34
1737 1939 4.191544 TCTTTCAAATGCTATAGCGTGCT 58.808 39.130 20.02 7.98 45.83 4.40
1738 1940 5.356426 TCTTTCAAATGCTATAGCGTGCTA 58.644 37.500 20.02 3.73 45.83 3.49
1739 1941 5.991606 TCTTTCAAATGCTATAGCGTGCTAT 59.008 36.000 20.02 17.65 45.83 2.97
1740 1942 7.151976 TCTTTCAAATGCTATAGCGTGCTATA 58.848 34.615 20.02 17.96 45.83 1.31
1746 1948 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
1747 1949 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
1769 1971 5.618561 GCTATAGCGCGCTATTTAAAATGT 58.381 37.500 46.76 28.88 39.65 2.71
1770 1972 6.077838 GCTATAGCGCGCTATTTAAAATGTT 58.922 36.000 46.76 28.22 39.65 2.71
1771 1973 6.577427 GCTATAGCGCGCTATTTAAAATGTTT 59.423 34.615 46.76 27.75 39.65 2.83
1772 1974 6.732181 ATAGCGCGCTATTTAAAATGTTTG 57.268 33.333 40.32 0.00 35.92 2.93
1773 1975 4.481463 AGCGCGCTATTTAAAATGTTTGT 58.519 34.783 35.79 0.63 0.00 2.83
1774 1976 4.920927 AGCGCGCTATTTAAAATGTTTGTT 59.079 33.333 35.79 0.18 0.00 2.83
1775 1977 5.060446 AGCGCGCTATTTAAAATGTTTGTTC 59.940 36.000 35.79 0.00 0.00 3.18
1776 1978 5.164138 GCGCGCTATTTAAAATGTTTGTTCA 60.164 36.000 26.67 0.00 0.00 3.18
1777 1979 6.453659 GCGCGCTATTTAAAATGTTTGTTCAT 60.454 34.615 26.67 0.00 0.00 2.57
1778 1980 7.444245 CGCGCTATTTAAAATGTTTGTTCATT 58.556 30.769 5.56 0.00 39.35 2.57
1779 1981 7.949428 CGCGCTATTTAAAATGTTTGTTCATTT 59.051 29.630 5.56 0.00 45.94 2.32
1780 1982 9.039500 GCGCTATTTAAAATGTTTGTTCATTTG 57.961 29.630 0.00 0.00 44.10 2.32
1788 1990 6.676237 AATGTTTGTTCATTTGTTTGGACC 57.324 33.333 0.00 0.00 34.86 4.46
1789 1991 5.152623 TGTTTGTTCATTTGTTTGGACCA 57.847 34.783 0.00 0.00 0.00 4.02
1790 1992 5.551233 TGTTTGTTCATTTGTTTGGACCAA 58.449 33.333 1.69 1.69 0.00 3.67
1791 1993 5.997746 TGTTTGTTCATTTGTTTGGACCAAA 59.002 32.000 15.89 15.89 36.34 3.28
1792 1994 6.148480 TGTTTGTTCATTTGTTTGGACCAAAG 59.852 34.615 20.14 8.25 35.45 2.77
1793 1995 5.413309 TGTTCATTTGTTTGGACCAAAGT 57.587 34.783 20.14 4.29 35.45 2.66
1794 1996 5.415221 TGTTCATTTGTTTGGACCAAAGTC 58.585 37.500 20.14 10.01 42.73 3.01
1795 1997 5.186797 TGTTCATTTGTTTGGACCAAAGTCT 59.813 36.000 20.14 2.95 43.05 3.24
1796 1998 5.514274 TCATTTGTTTGGACCAAAGTCTC 57.486 39.130 20.14 8.94 43.05 3.36
1797 1999 5.200483 TCATTTGTTTGGACCAAAGTCTCT 58.800 37.500 20.14 1.91 43.05 3.10
1798 2000 5.656416 TCATTTGTTTGGACCAAAGTCTCTT 59.344 36.000 20.14 1.05 43.05 2.85
1799 2001 6.831353 TCATTTGTTTGGACCAAAGTCTCTTA 59.169 34.615 20.14 1.24 43.05 2.10
1800 2002 6.693315 TTTGTTTGGACCAAAGTCTCTTAG 57.307 37.500 20.14 0.00 43.05 2.18
1801 2003 4.134563 TGTTTGGACCAAAGTCTCTTAGC 58.865 43.478 20.14 5.76 43.05 3.09
1802 2004 2.743636 TGGACCAAAGTCTCTTAGCG 57.256 50.000 0.00 0.00 43.05 4.26
1803 2005 1.337823 TGGACCAAAGTCTCTTAGCGC 60.338 52.381 0.00 0.00 43.05 5.92
1804 2006 1.337823 GGACCAAAGTCTCTTAGCGCA 60.338 52.381 11.47 0.00 43.05 6.09
1805 2007 2.413837 GACCAAAGTCTCTTAGCGCAA 58.586 47.619 11.47 0.50 40.10 4.85
1806 2008 2.413453 GACCAAAGTCTCTTAGCGCAAG 59.587 50.000 11.47 11.67 40.10 4.01
1807 2009 2.037251 ACCAAAGTCTCTTAGCGCAAGA 59.963 45.455 11.47 15.40 41.10 3.02
1808 2010 3.265791 CCAAAGTCTCTTAGCGCAAGAT 58.734 45.455 11.47 0.00 42.44 2.40
1809 2011 3.308323 CCAAAGTCTCTTAGCGCAAGATC 59.692 47.826 11.47 12.04 42.44 2.75
1810 2012 4.180057 CAAAGTCTCTTAGCGCAAGATCT 58.820 43.478 11.47 13.81 42.44 2.75
1811 2013 4.464069 AAGTCTCTTAGCGCAAGATCTT 57.536 40.909 11.47 17.90 42.44 2.40
1812 2014 4.464069 AGTCTCTTAGCGCAAGATCTTT 57.536 40.909 11.47 0.00 42.44 2.52
1813 2015 4.826556 AGTCTCTTAGCGCAAGATCTTTT 58.173 39.130 11.47 0.00 42.44 2.27
1814 2016 4.629200 AGTCTCTTAGCGCAAGATCTTTTG 59.371 41.667 11.47 2.14 42.44 2.44
1815 2017 4.390297 GTCTCTTAGCGCAAGATCTTTTGT 59.610 41.667 11.47 0.00 42.44 2.83
1816 2018 5.577164 GTCTCTTAGCGCAAGATCTTTTGTA 59.423 40.000 11.47 0.00 42.44 2.41
1817 2019 6.090898 GTCTCTTAGCGCAAGATCTTTTGTAA 59.909 38.462 11.47 1.29 42.44 2.41
1818 2020 6.649141 TCTCTTAGCGCAAGATCTTTTGTAAA 59.351 34.615 11.47 0.00 42.44 2.01
1819 2021 6.599437 TCTTAGCGCAAGATCTTTTGTAAAC 58.401 36.000 11.47 0.00 38.39 2.01
1820 2022 3.810373 AGCGCAAGATCTTTTGTAAACG 58.190 40.909 11.47 2.85 43.02 3.60
1821 2023 2.338520 GCGCAAGATCTTTTGTAAACGC 59.661 45.455 4.86 8.83 43.02 4.84
1822 2024 3.810373 CGCAAGATCTTTTGTAAACGCT 58.190 40.909 4.86 0.00 43.02 5.07
1823 2025 4.668177 GCGCAAGATCTTTTGTAAACGCTA 60.668 41.667 4.86 0.00 43.02 4.26
1824 2026 5.560148 CGCAAGATCTTTTGTAAACGCTAT 58.440 37.500 4.86 0.00 43.02 2.97
1825 2027 6.701937 CGCAAGATCTTTTGTAAACGCTATA 58.298 36.000 4.86 0.00 43.02 1.31
1826 2028 6.841286 CGCAAGATCTTTTGTAAACGCTATAG 59.159 38.462 4.86 0.00 43.02 1.31
1827 2029 6.629252 GCAAGATCTTTTGTAAACGCTATAGC 59.371 38.462 15.09 15.09 37.78 2.97
1841 2043 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
1842 2044 1.535833 ATAGCGTGCTATAGCGGAGT 58.464 50.000 19.55 7.38 45.83 3.85
1843 2045 1.315690 TAGCGTGCTATAGCGGAGTT 58.684 50.000 19.55 12.95 45.83 3.01
1844 2046 1.315690 AGCGTGCTATAGCGGAGTTA 58.684 50.000 19.55 0.00 45.83 2.24
1845 2047 1.887198 AGCGTGCTATAGCGGAGTTAT 59.113 47.619 19.55 0.00 45.83 1.89
1846 2048 3.079578 AGCGTGCTATAGCGGAGTTATA 58.920 45.455 19.55 0.00 45.83 0.98
1851 2053 3.694535 CTATAGCGGAGTTATAGCGGG 57.305 52.381 0.00 0.00 44.72 6.13
1852 2054 0.531200 ATAGCGGAGTTATAGCGGGC 59.469 55.000 0.00 0.00 30.45 6.13
1853 2055 0.538977 TAGCGGAGTTATAGCGGGCT 60.539 55.000 0.00 0.00 35.78 5.19
1854 2056 0.538977 AGCGGAGTTATAGCGGGCTA 60.539 55.000 2.42 2.42 35.78 3.93
1855 2057 0.531200 GCGGAGTTATAGCGGGCTAT 59.469 55.000 16.61 16.61 41.58 2.97
1856 2058 1.067071 GCGGAGTTATAGCGGGCTATT 60.067 52.381 17.49 1.04 39.65 1.73
1857 2059 2.612221 GCGGAGTTATAGCGGGCTATTT 60.612 50.000 17.49 5.36 39.65 1.40
1858 2060 2.993899 CGGAGTTATAGCGGGCTATTTG 59.006 50.000 17.49 0.33 39.65 2.32
1859 2061 3.305813 CGGAGTTATAGCGGGCTATTTGA 60.306 47.826 17.49 3.37 39.65 2.69
1860 2062 4.638304 GGAGTTATAGCGGGCTATTTGAA 58.362 43.478 17.49 4.65 39.65 2.69
1861 2063 5.061179 GGAGTTATAGCGGGCTATTTGAAA 58.939 41.667 17.49 4.32 39.65 2.69
1862 2064 5.049612 GGAGTTATAGCGGGCTATTTGAAAC 60.050 44.000 17.49 14.73 39.65 2.78
1863 2065 5.433526 AGTTATAGCGGGCTATTTGAAACA 58.566 37.500 17.49 0.00 39.65 2.83
1864 2066 5.527582 AGTTATAGCGGGCTATTTGAAACAG 59.472 40.000 17.49 0.00 39.65 3.16
1865 2067 2.200373 AGCGGGCTATTTGAAACAGT 57.800 45.000 0.00 0.00 0.00 3.55
1866 2068 1.812571 AGCGGGCTATTTGAAACAGTG 59.187 47.619 0.00 0.00 0.00 3.66
1867 2069 1.135402 GCGGGCTATTTGAAACAGTGG 60.135 52.381 0.00 0.00 0.00 4.00
1868 2070 2.159382 CGGGCTATTTGAAACAGTGGT 58.841 47.619 0.00 0.00 0.00 4.16
1869 2071 2.161609 CGGGCTATTTGAAACAGTGGTC 59.838 50.000 0.00 0.00 0.00 4.02
1882 2084 0.539986 AGTGGTCGTTGTGTCAGGTT 59.460 50.000 0.00 0.00 0.00 3.50
1993 2200 2.719739 CTTGTGATTGGAGATGCCTGT 58.280 47.619 0.00 0.00 37.63 4.00
2160 2406 3.813443 CTTGCACTGGACCTGCTATTAT 58.187 45.455 7.20 0.00 35.53 1.28
2161 2407 3.475566 TGCACTGGACCTGCTATTATC 57.524 47.619 7.20 0.00 35.53 1.75
2162 2408 2.104792 TGCACTGGACCTGCTATTATCC 59.895 50.000 7.20 0.00 35.53 2.59
2163 2409 2.868044 GCACTGGACCTGCTATTATCCG 60.868 54.545 0.00 0.00 33.63 4.18
2164 2410 2.365617 CACTGGACCTGCTATTATCCGT 59.634 50.000 0.00 0.00 33.63 4.69
2165 2411 2.365617 ACTGGACCTGCTATTATCCGTG 59.634 50.000 0.00 0.00 33.63 4.94
2166 2412 2.365617 CTGGACCTGCTATTATCCGTGT 59.634 50.000 0.00 0.00 33.63 4.49
2167 2413 2.102420 TGGACCTGCTATTATCCGTGTG 59.898 50.000 0.00 0.00 33.63 3.82
2168 2414 2.135933 GACCTGCTATTATCCGTGTGC 58.864 52.381 0.00 0.00 0.00 4.57
2169 2415 1.202651 ACCTGCTATTATCCGTGTGCC 60.203 52.381 0.00 0.00 0.00 5.01
2170 2416 1.070758 CCTGCTATTATCCGTGTGCCT 59.929 52.381 0.00 0.00 0.00 4.75
2171 2417 2.138320 CTGCTATTATCCGTGTGCCTG 58.862 52.381 0.00 0.00 0.00 4.85
2172 2418 1.484653 TGCTATTATCCGTGTGCCTGT 59.515 47.619 0.00 0.00 0.00 4.00
2173 2419 2.093181 TGCTATTATCCGTGTGCCTGTT 60.093 45.455 0.00 0.00 0.00 3.16
2174 2420 3.133183 TGCTATTATCCGTGTGCCTGTTA 59.867 43.478 0.00 0.00 0.00 2.41
2175 2421 4.202315 TGCTATTATCCGTGTGCCTGTTAT 60.202 41.667 0.00 0.00 0.00 1.89
2176 2422 4.152402 GCTATTATCCGTGTGCCTGTTATG 59.848 45.833 0.00 0.00 0.00 1.90
2177 2423 1.948104 TATCCGTGTGCCTGTTATGC 58.052 50.000 0.00 0.00 0.00 3.14
2178 2424 0.253044 ATCCGTGTGCCTGTTATGCT 59.747 50.000 0.00 0.00 0.00 3.79
2179 2425 0.036164 TCCGTGTGCCTGTTATGCTT 59.964 50.000 0.00 0.00 0.00 3.91
2180 2426 0.168788 CCGTGTGCCTGTTATGCTTG 59.831 55.000 0.00 0.00 0.00 4.01
2181 2427 0.874390 CGTGTGCCTGTTATGCTTGT 59.126 50.000 0.00 0.00 0.00 3.16
2182 2428 1.400113 CGTGTGCCTGTTATGCTTGTG 60.400 52.381 0.00 0.00 0.00 3.33
2183 2429 1.068333 GTGTGCCTGTTATGCTTGTGG 60.068 52.381 0.00 0.00 0.00 4.17
2184 2430 1.202867 TGTGCCTGTTATGCTTGTGGA 60.203 47.619 0.00 0.00 0.00 4.02
2185 2431 1.885887 GTGCCTGTTATGCTTGTGGAA 59.114 47.619 0.00 0.00 0.00 3.53
2186 2432 2.493278 GTGCCTGTTATGCTTGTGGAAT 59.507 45.455 0.00 0.00 0.00 3.01
2187 2433 3.694072 GTGCCTGTTATGCTTGTGGAATA 59.306 43.478 0.00 0.00 0.00 1.75
2289 2536 7.439955 TCGTATGTAAGATGTGTCAGTTTTGTT 59.560 33.333 0.00 0.00 0.00 2.83
2382 3797 8.212995 TGATTGATTGTTATTCTGGCTCATAGA 58.787 33.333 0.00 0.00 0.00 1.98
2421 3841 6.446318 TGGTTATTTGTGCTCTCAATTTGTC 58.554 36.000 0.00 0.00 0.00 3.18
2434 3854 3.433274 TCAATTTGTCGAGCTGATCACAC 59.567 43.478 0.00 0.00 0.00 3.82
2435 3855 2.524569 TTTGTCGAGCTGATCACACA 57.475 45.000 0.00 0.00 0.00 3.72
2436 3856 1.783284 TTGTCGAGCTGATCACACAC 58.217 50.000 0.00 0.00 0.00 3.82
2437 3857 0.961753 TGTCGAGCTGATCACACACT 59.038 50.000 0.00 0.00 0.00 3.55
2438 3858 2.159382 TGTCGAGCTGATCACACACTA 58.841 47.619 0.00 0.00 0.00 2.74
2439 3859 2.162408 TGTCGAGCTGATCACACACTAG 59.838 50.000 0.00 0.00 0.00 2.57
2440 3860 2.162608 GTCGAGCTGATCACACACTAGT 59.837 50.000 0.00 0.00 0.00 2.57
2441 3861 3.374367 GTCGAGCTGATCACACACTAGTA 59.626 47.826 0.00 0.00 0.00 1.82
2442 3862 3.623510 TCGAGCTGATCACACACTAGTAG 59.376 47.826 0.00 0.00 0.00 2.57
2443 3863 3.623510 CGAGCTGATCACACACTAGTAGA 59.376 47.826 3.59 0.00 0.00 2.59
2444 3864 4.095036 CGAGCTGATCACACACTAGTAGAA 59.905 45.833 3.59 0.00 0.00 2.10
2445 3865 5.392057 CGAGCTGATCACACACTAGTAGAAA 60.392 44.000 3.59 0.00 0.00 2.52
2446 3866 6.346477 AGCTGATCACACACTAGTAGAAAA 57.654 37.500 3.59 0.00 0.00 2.29
2447 3867 6.159988 AGCTGATCACACACTAGTAGAAAAC 58.840 40.000 3.59 0.00 0.00 2.43
2448 3868 5.926542 GCTGATCACACACTAGTAGAAAACA 59.073 40.000 3.59 0.00 0.00 2.83
2449 3869 6.090088 GCTGATCACACACTAGTAGAAAACAG 59.910 42.308 3.59 2.28 0.00 3.16
2450 3870 6.455647 TGATCACACACTAGTAGAAAACAGG 58.544 40.000 3.59 0.00 0.00 4.00
2451 3871 5.209818 TCACACACTAGTAGAAAACAGGG 57.790 43.478 3.59 0.00 0.00 4.45
2452 3872 3.746492 CACACACTAGTAGAAAACAGGGC 59.254 47.826 3.59 0.00 0.00 5.19
2453 3873 3.646637 ACACACTAGTAGAAAACAGGGCT 59.353 43.478 3.59 0.00 0.00 5.19
2454 3874 4.836736 ACACACTAGTAGAAAACAGGGCTA 59.163 41.667 3.59 0.00 0.00 3.93
2455 3875 5.306160 ACACACTAGTAGAAAACAGGGCTAA 59.694 40.000 3.59 0.00 0.00 3.09
2456 3876 5.869888 CACACTAGTAGAAAACAGGGCTAAG 59.130 44.000 3.59 0.00 0.00 2.18
2457 3877 5.046520 ACACTAGTAGAAAACAGGGCTAAGG 60.047 44.000 3.59 0.00 0.00 2.69
2458 3878 5.046520 CACTAGTAGAAAACAGGGCTAAGGT 60.047 44.000 3.59 0.00 0.00 3.50
2459 3879 4.995624 AGTAGAAAACAGGGCTAAGGTT 57.004 40.909 0.00 0.00 0.00 3.50
2460 3880 4.907809 AGTAGAAAACAGGGCTAAGGTTC 58.092 43.478 0.00 0.00 0.00 3.62
2461 3881 2.779506 AGAAAACAGGGCTAAGGTTCG 58.220 47.619 0.00 0.00 0.00 3.95
2462 3882 1.810755 GAAAACAGGGCTAAGGTTCGG 59.189 52.381 0.00 0.00 0.00 4.30
2463 3883 0.037734 AAACAGGGCTAAGGTTCGGG 59.962 55.000 0.00 0.00 0.00 5.14
2464 3884 2.124695 CAGGGCTAAGGTTCGGGC 60.125 66.667 0.00 0.00 0.00 6.13
2465 3885 3.408853 AGGGCTAAGGTTCGGGCC 61.409 66.667 0.00 0.00 44.57 5.80
2466 3886 3.408853 GGGCTAAGGTTCGGGCCT 61.409 66.667 0.84 0.00 43.62 5.19
2467 3887 2.124695 GGCTAAGGTTCGGGCCTG 60.125 66.667 4.71 4.71 41.20 4.85
2468 3888 2.124695 GCTAAGGTTCGGGCCTGG 60.125 66.667 12.87 0.00 39.17 4.45
2469 3889 2.124695 CTAAGGTTCGGGCCTGGC 60.125 66.667 12.87 11.05 39.17 4.85
2480 3900 2.520260 GCCTGGCCAGCCCATTAG 60.520 66.667 28.39 12.86 44.33 1.73
2481 3901 3.010144 CCTGGCCAGCCCATTAGT 58.990 61.111 28.39 0.00 44.33 2.24
2482 3902 1.152881 CCTGGCCAGCCCATTAGTC 60.153 63.158 28.39 0.00 44.33 2.59
2483 3903 1.152881 CTGGCCAGCCCATTAGTCC 60.153 63.158 22.33 0.00 44.33 3.85
2484 3904 2.195956 GGCCAGCCCATTAGTCCC 59.804 66.667 0.00 0.00 0.00 4.46
2485 3905 2.203209 GCCAGCCCATTAGTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
2486 3906 2.510906 CCAGCCCATTAGTCCCGG 59.489 66.667 0.00 0.00 0.00 5.73
2487 3907 2.375345 CCAGCCCATTAGTCCCGGT 61.375 63.158 0.00 0.00 0.00 5.28
2488 3908 1.607612 CAGCCCATTAGTCCCGGTT 59.392 57.895 0.00 0.00 0.00 4.44
2489 3909 0.463833 CAGCCCATTAGTCCCGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
2490 3910 0.620700 AGCCCATTAGTCCCGGTTCT 60.621 55.000 0.00 0.15 0.00 3.01
2491 3911 0.255033 GCCCATTAGTCCCGGTTCTT 59.745 55.000 0.00 0.00 0.00 2.52
2492 3912 1.340697 GCCCATTAGTCCCGGTTCTTT 60.341 52.381 0.00 0.00 0.00 2.52
2493 3913 2.092807 GCCCATTAGTCCCGGTTCTTTA 60.093 50.000 0.00 0.00 0.00 1.85
2494 3914 3.622953 GCCCATTAGTCCCGGTTCTTTAA 60.623 47.826 0.00 0.00 0.00 1.52
2495 3915 4.196971 CCCATTAGTCCCGGTTCTTTAAG 58.803 47.826 0.00 0.00 0.00 1.85
2496 3916 4.080751 CCCATTAGTCCCGGTTCTTTAAGA 60.081 45.833 0.00 0.00 0.00 2.10
2497 3917 5.493809 CCATTAGTCCCGGTTCTTTAAGAA 58.506 41.667 2.94 2.94 0.00 2.52
2506 3926 2.430465 GTTCTTTAAGAACCGGGACCC 58.570 52.381 23.03 0.00 46.68 4.46
2507 3927 1.732117 TCTTTAAGAACCGGGACCCA 58.268 50.000 12.15 0.00 0.00 4.51
2508 3928 2.271777 TCTTTAAGAACCGGGACCCAT 58.728 47.619 12.15 0.00 0.00 4.00
2509 3929 2.026636 TCTTTAAGAACCGGGACCCATG 60.027 50.000 12.15 3.12 0.00 3.66
2510 3930 0.621609 TTAAGAACCGGGACCCATGG 59.378 55.000 12.15 4.14 0.00 3.66
2511 3931 1.276140 TAAGAACCGGGACCCATGGG 61.276 60.000 30.23 30.23 42.03 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.830477 GCTGGCCCATAACCATCAAAA 59.170 47.619 0.00 0.00 36.36 2.44
41 42 0.324275 GGTGGAAAGCTGGCCCATAA 60.324 55.000 0.00 0.00 31.94 1.90
62 63 1.743394 GGTAGCTTAACAATTGGCGCT 59.257 47.619 7.64 13.07 0.00 5.92
107 108 1.340991 GCACCCTCCTTAATTGCTGGA 60.341 52.381 0.00 0.00 0.00 3.86
115 116 3.097614 GAGACACTAGCACCCTCCTTAA 58.902 50.000 0.00 0.00 0.00 1.85
334 335 5.699839 ACAATTTCAAACGGAAGCTATCAC 58.300 37.500 0.00 0.00 36.72 3.06
391 392 0.948623 CTGGTCAATGCACGGTCGAA 60.949 55.000 0.00 0.00 0.00 3.71
395 396 0.179032 TGTTCTGGTCAATGCACGGT 60.179 50.000 0.00 0.00 0.00 4.83
419 420 1.845809 CGTGCACCTCCAGCTGAAAC 61.846 60.000 17.39 1.57 0.00 2.78
578 590 9.599056 TCTCCATATATGTCAATCTTCTTCTCT 57.401 33.333 11.73 0.00 0.00 3.10
596 608 3.244491 GCAGGCTGACTTGATCTCCATAT 60.244 47.826 20.86 0.00 0.00 1.78
639 657 5.356190 CCATGCTTTGAACATCACTGTATCT 59.644 40.000 0.00 0.00 33.36 1.98
641 659 5.012239 ACCATGCTTTGAACATCACTGTAT 58.988 37.500 0.00 0.00 33.36 2.29
722 740 4.640647 GCCACCCTTTTAGAAATCTCGATT 59.359 41.667 0.00 0.00 0.00 3.34
732 750 3.355378 CATGACATGCCACCCTTTTAGA 58.645 45.455 1.71 0.00 0.00 2.10
738 756 1.304282 GTCCATGACATGCCACCCT 59.696 57.895 10.10 0.00 32.09 4.34
766 784 1.645034 AACCGCTTCATGACATCTCG 58.355 50.000 0.00 0.00 0.00 4.04
840 858 0.464554 GCCTGAGCAACCTCCCATAC 60.465 60.000 0.00 0.00 39.53 2.39
906 927 8.055181 TCCAGCTCCTTAAATTCATATGTTTCT 58.945 33.333 1.90 0.00 0.00 2.52
946 968 2.191513 CGGGCCGTTAGGAGATCGA 61.192 63.158 19.97 0.00 41.02 3.59
1029 1149 3.620488 GAATACATGGCTGAGGTTTCCA 58.380 45.455 0.00 0.00 0.00 3.53
1033 1153 2.632377 CACGAATACATGGCTGAGGTT 58.368 47.619 0.00 0.00 0.00 3.50
1142 1265 1.078918 TCGCATAGCTGCTGCAACT 60.079 52.632 18.42 10.72 46.65 3.16
1153 1276 2.868583 CCACCATCTTGAACTCGCATAG 59.131 50.000 0.00 0.00 0.00 2.23
1191 1314 4.349048 CCCCAACATCCTCTGATCTTGATA 59.651 45.833 0.00 0.00 30.84 2.15
1248 1371 1.078214 CGGCTTCTTCATGCCTCCA 60.078 57.895 0.00 0.00 46.42 3.86
1290 1413 2.331893 CCATTCAAGCGCGTCCCAA 61.332 57.895 8.43 0.00 0.00 4.12
1302 1425 1.264749 CCACCTCCTCGTCCCATTCA 61.265 60.000 0.00 0.00 0.00 2.57
1305 1428 3.083997 GCCACCTCCTCGTCCCAT 61.084 66.667 0.00 0.00 0.00 4.00
1355 1478 6.436532 CCTGGGTAGTTTCTTCTTGTAGTAGA 59.563 42.308 0.00 0.00 0.00 2.59
1398 1521 5.624509 CGGATTTGTGACATGTAGGAGAGAA 60.625 44.000 0.00 0.00 0.00 2.87
1428 1555 7.394016 TGAGTATGATCTTGGCAGTTTAGAAA 58.606 34.615 0.00 0.00 0.00 2.52
1430 1557 6.544928 TGAGTATGATCTTGGCAGTTTAGA 57.455 37.500 0.00 0.00 0.00 2.10
1461 1589 4.021016 AGGGTGAGTAACAAAGCTGAGTAG 60.021 45.833 0.00 0.00 0.00 2.57
1462 1590 3.901844 AGGGTGAGTAACAAAGCTGAGTA 59.098 43.478 0.00 0.00 0.00 2.59
1463 1591 2.706190 AGGGTGAGTAACAAAGCTGAGT 59.294 45.455 0.00 0.00 0.00 3.41
1464 1592 3.409026 AGGGTGAGTAACAAAGCTGAG 57.591 47.619 0.00 0.00 0.00 3.35
1465 1593 3.857157 AAGGGTGAGTAACAAAGCTGA 57.143 42.857 0.00 0.00 0.00 4.26
1547 1732 1.153549 GCAAGACCTGTAGGAGCGG 60.154 63.158 4.64 0.00 38.94 5.52
1562 1754 4.548494 CAAACACATGCAATAGACAGCAA 58.452 39.130 0.00 0.00 44.88 3.91
1571 1763 4.094590 CACAACAAACCAAACACATGCAAT 59.905 37.500 0.00 0.00 0.00 3.56
1603 1801 3.057596 TGCAAATCTCCTTTAAGCAACCG 60.058 43.478 0.00 0.00 0.00 4.44
1612 1810 1.608590 CACCACGTGCAAATCTCCTTT 59.391 47.619 10.91 0.00 0.00 3.11
1615 1813 0.517316 GACACCACGTGCAAATCTCC 59.483 55.000 10.91 0.00 36.98 3.71
1626 1824 4.016629 TCGACGACCGACACCACG 62.017 66.667 0.00 0.00 43.23 4.94
1654 1856 1.521423 GACAACGACACACAGTAGCAC 59.479 52.381 0.00 0.00 0.00 4.40
1668 1870 5.439694 CGCGCTATTTAAAACTTTGACAACG 60.440 40.000 5.56 0.00 0.00 4.10
1669 1871 5.662099 GCGCGCTATTTAAAACTTTGACAAC 60.662 40.000 26.67 0.00 0.00 3.32
1670 1872 4.380382 GCGCGCTATTTAAAACTTTGACAA 59.620 37.500 26.67 0.00 0.00 3.18
1671 1873 3.909574 GCGCGCTATTTAAAACTTTGACA 59.090 39.130 26.67 0.00 0.00 3.58
1672 1874 4.156182 AGCGCGCTATTTAAAACTTTGAC 58.844 39.130 35.79 0.00 0.00 3.18
1673 1875 4.413495 AGCGCGCTATTTAAAACTTTGA 57.587 36.364 35.79 0.00 0.00 2.69
1674 1876 5.275280 GCTTAGCGCGCTATTTAAAACTTTG 60.275 40.000 38.51 15.49 0.00 2.77
1675 1877 4.791676 GCTTAGCGCGCTATTTAAAACTTT 59.208 37.500 38.51 13.72 0.00 2.66
1676 1878 4.142773 TGCTTAGCGCGCTATTTAAAACTT 60.143 37.500 38.51 13.94 43.27 2.66
1677 1879 3.372822 TGCTTAGCGCGCTATTTAAAACT 59.627 39.130 38.51 14.50 43.27 2.66
1678 1880 3.676540 TGCTTAGCGCGCTATTTAAAAC 58.323 40.909 38.51 22.00 43.27 2.43
1679 1881 4.272504 AGATGCTTAGCGCGCTATTTAAAA 59.727 37.500 38.51 24.43 43.27 1.52
1680 1882 3.807622 AGATGCTTAGCGCGCTATTTAAA 59.192 39.130 38.51 25.16 43.27 1.52
1681 1883 3.390135 AGATGCTTAGCGCGCTATTTAA 58.610 40.909 38.51 25.53 43.27 1.52
1682 1884 3.026630 AGATGCTTAGCGCGCTATTTA 57.973 42.857 38.51 26.65 43.27 1.40
1683 1885 1.871080 AGATGCTTAGCGCGCTATTT 58.129 45.000 38.51 23.54 43.27 1.40
1684 1886 1.871080 AAGATGCTTAGCGCGCTATT 58.129 45.000 38.51 26.01 43.27 1.73
1685 1887 2.600731 CTAAGATGCTTAGCGCGCTAT 58.399 47.619 38.51 26.50 43.27 2.97
1686 1888 1.930817 GCTAAGATGCTTAGCGCGCTA 60.931 52.381 35.48 35.48 43.27 4.26
1687 1889 1.218230 GCTAAGATGCTTAGCGCGCT 61.218 55.000 38.01 38.01 43.27 5.92
1688 1890 1.202816 GCTAAGATGCTTAGCGCGC 59.797 57.895 26.66 26.66 43.27 6.86
1692 1894 1.560860 CCGGCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
1693 1895 0.032130 TCCGGCGCTAAGATGCTTAG 59.968 55.000 7.64 9.30 0.00 2.18
1694 1896 0.249322 GTCCGGCGCTAAGATGCTTA 60.249 55.000 7.64 0.00 0.00 3.09
1695 1897 1.521681 GTCCGGCGCTAAGATGCTT 60.522 57.895 7.64 0.00 0.00 3.91
1696 1898 2.107141 GTCCGGCGCTAAGATGCT 59.893 61.111 7.64 0.00 0.00 3.79
1697 1899 2.967615 GGTCCGGCGCTAAGATGC 60.968 66.667 7.64 0.00 0.00 3.91
1698 1900 1.300233 GAGGTCCGGCGCTAAGATG 60.300 63.158 7.64 0.00 0.00 2.90
1699 1901 1.043673 AAGAGGTCCGGCGCTAAGAT 61.044 55.000 7.64 0.00 0.00 2.40
1700 1902 1.255667 AAAGAGGTCCGGCGCTAAGA 61.256 55.000 7.64 0.00 0.00 2.10
1701 1903 0.806492 GAAAGAGGTCCGGCGCTAAG 60.806 60.000 7.64 0.00 0.00 2.18
1702 1904 1.217244 GAAAGAGGTCCGGCGCTAA 59.783 57.895 7.64 0.00 0.00 3.09
1703 1905 1.537814 TTGAAAGAGGTCCGGCGCTA 61.538 55.000 7.64 0.00 0.00 4.26
1704 1906 2.391724 TTTGAAAGAGGTCCGGCGCT 62.392 55.000 7.64 0.00 0.00 5.92
1705 1907 1.305930 ATTTGAAAGAGGTCCGGCGC 61.306 55.000 0.00 0.00 0.00 6.53
1706 1908 0.447801 CATTTGAAAGAGGTCCGGCG 59.552 55.000 0.00 0.00 0.00 6.46
1707 1909 0.171231 GCATTTGAAAGAGGTCCGGC 59.829 55.000 0.00 0.00 0.00 6.13
1708 1910 1.826385 AGCATTTGAAAGAGGTCCGG 58.174 50.000 0.00 0.00 0.00 5.14
1709 1911 4.212214 GCTATAGCATTTGAAAGAGGTCCG 59.788 45.833 20.01 0.00 41.59 4.79
1710 1912 4.212214 CGCTATAGCATTTGAAAGAGGTCC 59.788 45.833 23.99 0.00 42.21 4.46
1711 1913 4.811557 ACGCTATAGCATTTGAAAGAGGTC 59.188 41.667 23.99 0.00 42.21 3.85
1712 1914 4.572389 CACGCTATAGCATTTGAAAGAGGT 59.428 41.667 23.99 6.60 42.21 3.85
1713 1915 4.553547 GCACGCTATAGCATTTGAAAGAGG 60.554 45.833 23.99 5.98 42.21 3.69
1714 1916 4.272018 AGCACGCTATAGCATTTGAAAGAG 59.728 41.667 23.99 6.48 42.21 2.85
1715 1917 4.191544 AGCACGCTATAGCATTTGAAAGA 58.808 39.130 23.99 0.00 42.21 2.52
1716 1918 4.542662 AGCACGCTATAGCATTTGAAAG 57.457 40.909 23.99 7.87 42.21 2.62
1717 1919 7.351414 CTATAGCACGCTATAGCATTTGAAA 57.649 36.000 25.42 9.51 46.26 2.69
1718 1920 6.951256 CTATAGCACGCTATAGCATTTGAA 57.049 37.500 25.42 9.81 46.26 2.69
1727 1929 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
1728 1930 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
1729 1931 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
1730 1932 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
1731 1933 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
1739 1941 2.868196 CGCGCTATAGCTCCGCTA 59.132 61.111 21.98 0.00 45.55 4.26
1742 1944 0.179161 AATAGCGCGCTATAGCTCCG 60.179 55.000 43.81 22.32 43.44 4.63
1743 1945 1.997669 AAATAGCGCGCTATAGCTCC 58.002 50.000 43.81 10.26 43.44 4.70
1744 1946 5.511088 TTTTAAATAGCGCGCTATAGCTC 57.489 39.130 43.81 13.77 43.44 4.09
1745 1947 5.408604 ACATTTTAAATAGCGCGCTATAGCT 59.591 36.000 43.81 33.17 46.53 3.32
1746 1948 5.618561 ACATTTTAAATAGCGCGCTATAGC 58.381 37.500 43.81 15.09 38.20 2.97
1747 1949 7.586300 ACAAACATTTTAAATAGCGCGCTATAG 59.414 33.333 43.81 29.40 38.20 1.31
1748 1950 7.411274 ACAAACATTTTAAATAGCGCGCTATA 58.589 30.769 43.81 31.73 38.20 1.31
1749 1951 6.262601 ACAAACATTTTAAATAGCGCGCTAT 58.737 32.000 40.32 40.32 40.63 2.97
1750 1952 5.632959 ACAAACATTTTAAATAGCGCGCTA 58.367 33.333 39.72 39.72 0.00 4.26
1751 1953 4.481463 ACAAACATTTTAAATAGCGCGCT 58.519 34.783 38.01 38.01 0.00 5.92
1752 1954 4.816277 ACAAACATTTTAAATAGCGCGC 57.184 36.364 26.66 26.66 0.00 6.86
1753 1955 6.369326 TGAACAAACATTTTAAATAGCGCG 57.631 33.333 0.00 0.00 0.00 6.86
1754 1956 9.039500 CAAATGAACAAACATTTTAAATAGCGC 57.961 29.630 0.00 0.00 44.63 5.92
1762 1964 8.669243 GGTCCAAACAAATGAACAAACATTTTA 58.331 29.630 0.00 0.00 44.63 1.52
1763 1965 7.175641 TGGTCCAAACAAATGAACAAACATTTT 59.824 29.630 0.00 0.00 44.63 1.82
1764 1966 6.656693 TGGTCCAAACAAATGAACAAACATTT 59.343 30.769 0.00 0.00 46.85 2.32
1765 1967 6.176183 TGGTCCAAACAAATGAACAAACATT 58.824 32.000 0.00 0.00 41.43 2.71
1766 1968 5.738909 TGGTCCAAACAAATGAACAAACAT 58.261 33.333 0.00 0.00 0.00 2.71
1767 1969 5.152623 TGGTCCAAACAAATGAACAAACA 57.847 34.783 0.00 0.00 0.00 2.83
1768 1970 6.148645 ACTTTGGTCCAAACAAATGAACAAAC 59.851 34.615 13.26 0.00 39.91 2.93
1769 1971 6.234177 ACTTTGGTCCAAACAAATGAACAAA 58.766 32.000 13.26 0.00 41.86 2.83
1770 1972 5.799213 ACTTTGGTCCAAACAAATGAACAA 58.201 33.333 13.26 0.00 37.22 2.83
1771 1973 5.186797 AGACTTTGGTCCAAACAAATGAACA 59.813 36.000 13.26 0.00 43.05 3.18
1772 1974 5.660460 AGACTTTGGTCCAAACAAATGAAC 58.340 37.500 13.26 4.31 43.05 3.18
1773 1975 5.656416 AGAGACTTTGGTCCAAACAAATGAA 59.344 36.000 13.26 0.00 43.05 2.57
1774 1976 5.200483 AGAGACTTTGGTCCAAACAAATGA 58.800 37.500 13.26 0.00 43.05 2.57
1775 1977 5.520376 AGAGACTTTGGTCCAAACAAATG 57.480 39.130 13.26 6.01 43.05 2.32
1776 1978 6.239036 GCTAAGAGACTTTGGTCCAAACAAAT 60.239 38.462 13.26 0.00 43.05 2.32
1777 1979 5.067283 GCTAAGAGACTTTGGTCCAAACAAA 59.933 40.000 13.26 0.00 43.05 2.83
1778 1980 4.578928 GCTAAGAGACTTTGGTCCAAACAA 59.421 41.667 13.26 0.00 43.05 2.83
1779 1981 4.134563 GCTAAGAGACTTTGGTCCAAACA 58.865 43.478 13.26 0.00 43.05 2.83
1780 1982 3.186613 CGCTAAGAGACTTTGGTCCAAAC 59.813 47.826 13.26 4.96 43.05 2.93
1781 1983 3.399330 CGCTAAGAGACTTTGGTCCAAA 58.601 45.455 16.26 16.26 43.05 3.28
1782 1984 2.870435 GCGCTAAGAGACTTTGGTCCAA 60.870 50.000 0.00 0.00 43.05 3.53
1783 1985 1.337823 GCGCTAAGAGACTTTGGTCCA 60.338 52.381 0.00 0.00 43.05 4.02
1784 1986 1.337823 TGCGCTAAGAGACTTTGGTCC 60.338 52.381 9.73 0.00 43.05 4.46
1785 1987 2.080286 TGCGCTAAGAGACTTTGGTC 57.920 50.000 9.73 0.00 42.41 4.02
1786 1988 2.037251 TCTTGCGCTAAGAGACTTTGGT 59.963 45.455 9.73 0.00 40.43 3.67
1787 1989 2.688507 TCTTGCGCTAAGAGACTTTGG 58.311 47.619 9.73 0.00 40.43 3.28
1796 1998 5.504755 CGTTTACAAAAGATCTTGCGCTAAG 59.495 40.000 9.17 11.02 37.76 2.18
1797 1999 5.379003 CGTTTACAAAAGATCTTGCGCTAA 58.621 37.500 9.17 0.00 0.00 3.09
1798 2000 4.668177 GCGTTTACAAAAGATCTTGCGCTA 60.668 41.667 9.17 0.00 33.83 4.26
1799 2001 3.810373 CGTTTACAAAAGATCTTGCGCT 58.190 40.909 9.17 0.00 0.00 5.92
1800 2002 2.338520 GCGTTTACAAAAGATCTTGCGC 59.661 45.455 9.17 12.13 30.74 6.09
1801 2003 3.810373 AGCGTTTACAAAAGATCTTGCG 58.190 40.909 9.17 5.79 0.00 4.85
1802 2004 6.629252 GCTATAGCGTTTACAAAAGATCTTGC 59.371 38.462 9.17 5.39 0.00 4.01
1822 2024 2.708051 ACTCCGCTATAGCACGCTATA 58.292 47.619 23.99 15.99 42.21 1.31
1823 2025 1.535833 ACTCCGCTATAGCACGCTAT 58.464 50.000 23.99 15.45 42.21 2.97
1824 2026 1.315690 AACTCCGCTATAGCACGCTA 58.684 50.000 23.99 0.39 42.21 4.26
1825 2027 1.315690 TAACTCCGCTATAGCACGCT 58.684 50.000 23.99 7.00 42.21 5.07
1826 2028 2.349297 ATAACTCCGCTATAGCACGC 57.651 50.000 23.99 0.00 42.21 5.34
1830 2032 2.223525 CCCGCTATAACTCCGCTATAGC 60.224 54.545 15.09 15.09 45.71 2.97
1831 2033 2.223525 GCCCGCTATAACTCCGCTATAG 60.224 54.545 0.00 0.00 33.99 1.31
1832 2034 1.747355 GCCCGCTATAACTCCGCTATA 59.253 52.381 0.00 0.00 0.00 1.31
1833 2035 0.531200 GCCCGCTATAACTCCGCTAT 59.469 55.000 0.00 0.00 0.00 2.97
1834 2036 0.538977 AGCCCGCTATAACTCCGCTA 60.539 55.000 0.00 0.00 0.00 4.26
1835 2037 0.538977 TAGCCCGCTATAACTCCGCT 60.539 55.000 0.00 0.00 0.00 5.52
1836 2038 0.531200 ATAGCCCGCTATAACTCCGC 59.469 55.000 7.44 0.00 37.47 5.54
1837 2039 2.993899 CAAATAGCCCGCTATAACTCCG 59.006 50.000 9.56 0.00 38.20 4.63
1838 2040 4.267349 TCAAATAGCCCGCTATAACTCC 57.733 45.455 9.56 0.00 38.20 3.85
1839 2041 5.526111 TGTTTCAAATAGCCCGCTATAACTC 59.474 40.000 9.56 1.16 38.20 3.01
1840 2042 5.433526 TGTTTCAAATAGCCCGCTATAACT 58.566 37.500 9.56 0.00 38.20 2.24
1841 2043 5.296035 ACTGTTTCAAATAGCCCGCTATAAC 59.704 40.000 9.56 10.37 38.20 1.89
1842 2044 5.295787 CACTGTTTCAAATAGCCCGCTATAA 59.704 40.000 9.56 0.00 38.20 0.98
1843 2045 4.814234 CACTGTTTCAAATAGCCCGCTATA 59.186 41.667 9.56 0.00 38.20 1.31
1844 2046 3.627577 CACTGTTTCAAATAGCCCGCTAT 59.372 43.478 3.31 3.31 40.63 2.97
1845 2047 3.006940 CACTGTTTCAAATAGCCCGCTA 58.993 45.455 0.00 0.00 0.00 4.26
1846 2048 1.812571 CACTGTTTCAAATAGCCCGCT 59.187 47.619 0.00 0.00 0.00 5.52
1847 2049 1.135402 CCACTGTTTCAAATAGCCCGC 60.135 52.381 0.00 0.00 0.00 6.13
1848 2050 2.159382 ACCACTGTTTCAAATAGCCCG 58.841 47.619 0.00 0.00 0.00 6.13
1849 2051 2.161609 CGACCACTGTTTCAAATAGCCC 59.838 50.000 0.00 0.00 0.00 5.19
1850 2052 2.812011 ACGACCACTGTTTCAAATAGCC 59.188 45.455 0.00 0.00 0.00 3.93
1851 2053 4.219033 CAACGACCACTGTTTCAAATAGC 58.781 43.478 0.00 0.00 0.00 2.97
1852 2054 5.204833 CACAACGACCACTGTTTCAAATAG 58.795 41.667 0.00 0.00 0.00 1.73
1853 2055 4.636648 ACACAACGACCACTGTTTCAAATA 59.363 37.500 0.00 0.00 0.00 1.40
1854 2056 3.442273 ACACAACGACCACTGTTTCAAAT 59.558 39.130 0.00 0.00 0.00 2.32
1855 2057 2.814919 ACACAACGACCACTGTTTCAAA 59.185 40.909 0.00 0.00 0.00 2.69
1856 2058 2.417239 GACACAACGACCACTGTTTCAA 59.583 45.455 0.00 0.00 0.00 2.69
1857 2059 2.004017 GACACAACGACCACTGTTTCA 58.996 47.619 0.00 0.00 0.00 2.69
1858 2060 2.004017 TGACACAACGACCACTGTTTC 58.996 47.619 0.00 0.00 0.00 2.78
1859 2061 2.006888 CTGACACAACGACCACTGTTT 58.993 47.619 0.00 0.00 0.00 2.83
1860 2062 1.651987 CTGACACAACGACCACTGTT 58.348 50.000 0.00 0.00 0.00 3.16
1861 2063 0.179084 CCTGACACAACGACCACTGT 60.179 55.000 0.00 0.00 0.00 3.55
1862 2064 0.179084 ACCTGACACAACGACCACTG 60.179 55.000 0.00 0.00 0.00 3.66
1863 2065 0.539986 AACCTGACACAACGACCACT 59.460 50.000 0.00 0.00 0.00 4.00
1864 2066 1.063469 CAAACCTGACACAACGACCAC 59.937 52.381 0.00 0.00 0.00 4.16
1865 2067 1.066071 TCAAACCTGACACAACGACCA 60.066 47.619 0.00 0.00 0.00 4.02
1866 2068 1.597663 CTCAAACCTGACACAACGACC 59.402 52.381 0.00 0.00 0.00 4.79
1867 2069 1.003866 GCTCAAACCTGACACAACGAC 60.004 52.381 0.00 0.00 0.00 4.34
1868 2070 1.134521 AGCTCAAACCTGACACAACGA 60.135 47.619 0.00 0.00 0.00 3.85
1869 2071 1.299541 AGCTCAAACCTGACACAACG 58.700 50.000 0.00 0.00 0.00 4.10
2010 2217 8.314021 TCAATCACTACAAGTTCATACTCATGT 58.686 33.333 0.00 0.00 31.99 3.21
2160 2406 0.036164 AAGCATAACAGGCACACGGA 59.964 50.000 0.00 0.00 0.00 4.69
2161 2407 0.168788 CAAGCATAACAGGCACACGG 59.831 55.000 0.00 0.00 0.00 4.94
2162 2408 0.874390 ACAAGCATAACAGGCACACG 59.126 50.000 0.00 0.00 0.00 4.49
2163 2409 1.068333 CCACAAGCATAACAGGCACAC 60.068 52.381 0.00 0.00 0.00 3.82
2164 2410 1.202867 TCCACAAGCATAACAGGCACA 60.203 47.619 0.00 0.00 0.00 4.57
2165 2411 1.533625 TCCACAAGCATAACAGGCAC 58.466 50.000 0.00 0.00 0.00 5.01
2166 2412 2.284754 TTCCACAAGCATAACAGGCA 57.715 45.000 0.00 0.00 0.00 4.75
2167 2413 4.981806 TTATTCCACAAGCATAACAGGC 57.018 40.909 0.00 0.00 0.00 4.85
2168 2414 7.601856 TCTTTTTATTCCACAAGCATAACAGG 58.398 34.615 0.00 0.00 0.00 4.00
2169 2415 9.643693 AATCTTTTTATTCCACAAGCATAACAG 57.356 29.630 0.00 0.00 0.00 3.16
2170 2416 9.421806 CAATCTTTTTATTCCACAAGCATAACA 57.578 29.630 0.00 0.00 0.00 2.41
2171 2417 9.423061 ACAATCTTTTTATTCCACAAGCATAAC 57.577 29.630 0.00 0.00 0.00 1.89
2187 2433 9.379791 CCGTTCTCCTAGTATTACAATCTTTTT 57.620 33.333 0.00 0.00 0.00 1.94
2421 3841 2.929531 ACTAGTGTGTGATCAGCTCG 57.070 50.000 0.00 0.00 0.00 5.03
2434 3854 5.046520 ACCTTAGCCCTGTTTTCTACTAGTG 60.047 44.000 5.39 0.00 0.00 2.74
2435 3855 5.092259 ACCTTAGCCCTGTTTTCTACTAGT 58.908 41.667 0.00 0.00 0.00 2.57
2436 3856 5.678955 ACCTTAGCCCTGTTTTCTACTAG 57.321 43.478 0.00 0.00 0.00 2.57
2437 3857 5.337009 CGAACCTTAGCCCTGTTTTCTACTA 60.337 44.000 0.00 0.00 0.00 1.82
2438 3858 4.562963 CGAACCTTAGCCCTGTTTTCTACT 60.563 45.833 0.00 0.00 0.00 2.57
2439 3859 3.683340 CGAACCTTAGCCCTGTTTTCTAC 59.317 47.826 0.00 0.00 0.00 2.59
2440 3860 3.307199 CCGAACCTTAGCCCTGTTTTCTA 60.307 47.826 0.00 0.00 0.00 2.10
2441 3861 2.552373 CCGAACCTTAGCCCTGTTTTCT 60.552 50.000 0.00 0.00 0.00 2.52
2442 3862 1.810755 CCGAACCTTAGCCCTGTTTTC 59.189 52.381 0.00 0.00 0.00 2.29
2443 3863 1.546998 CCCGAACCTTAGCCCTGTTTT 60.547 52.381 0.00 0.00 0.00 2.43
2444 3864 0.037734 CCCGAACCTTAGCCCTGTTT 59.962 55.000 0.00 0.00 0.00 2.83
2445 3865 1.683441 CCCGAACCTTAGCCCTGTT 59.317 57.895 0.00 0.00 0.00 3.16
2446 3866 2.967946 GCCCGAACCTTAGCCCTGT 61.968 63.158 0.00 0.00 0.00 4.00
2447 3867 2.124695 GCCCGAACCTTAGCCCTG 60.125 66.667 0.00 0.00 0.00 4.45
2448 3868 3.408853 GGCCCGAACCTTAGCCCT 61.409 66.667 0.00 0.00 39.60 5.19
2450 3870 2.124695 CAGGCCCGAACCTTAGCC 60.125 66.667 0.00 0.00 46.13 3.93
2451 3871 2.124695 CCAGGCCCGAACCTTAGC 60.125 66.667 0.00 0.00 38.26 3.09
2452 3872 2.124695 GCCAGGCCCGAACCTTAG 60.125 66.667 0.00 0.00 38.26 2.18
2453 3873 3.723922 GGCCAGGCCCGAACCTTA 61.724 66.667 21.62 0.00 44.06 2.69
2464 3884 1.152881 GACTAATGGGCTGGCCAGG 60.153 63.158 33.46 20.55 37.98 4.45
2465 3885 1.152881 GGACTAATGGGCTGGCCAG 60.153 63.158 29.34 29.34 37.98 4.85
2466 3886 2.689691 GGGACTAATGGGCTGGCCA 61.690 63.158 26.08 26.08 37.98 5.36
2467 3887 2.195956 GGGACTAATGGGCTGGCC 59.804 66.667 14.23 14.23 0.00 5.36
2468 3888 2.203209 CGGGACTAATGGGCTGGC 60.203 66.667 0.00 0.00 0.00 4.85
2469 3889 1.921869 AACCGGGACTAATGGGCTGG 61.922 60.000 6.32 0.00 0.00 4.85
2470 3890 0.463833 GAACCGGGACTAATGGGCTG 60.464 60.000 6.32 0.00 0.00 4.85
2471 3891 0.620700 AGAACCGGGACTAATGGGCT 60.621 55.000 6.32 0.00 0.00 5.19
2472 3892 0.255033 AAGAACCGGGACTAATGGGC 59.745 55.000 6.32 0.00 0.00 5.36
2473 3893 2.801077 AAAGAACCGGGACTAATGGG 57.199 50.000 6.32 0.00 0.00 4.00
2474 3894 5.093849 TCTTAAAGAACCGGGACTAATGG 57.906 43.478 6.32 0.00 0.00 3.16
2475 3895 6.418585 GTTCTTAAAGAACCGGGACTAATG 57.581 41.667 6.32 0.12 46.68 1.90
2487 3907 2.056359 TGGGTCCCGGTTCTTAAAGAA 58.944 47.619 2.65 0.00 0.00 2.52
2488 3908 1.732117 TGGGTCCCGGTTCTTAAAGA 58.268 50.000 2.65 0.00 0.00 2.52
2489 3909 2.365582 CATGGGTCCCGGTTCTTAAAG 58.634 52.381 2.65 0.00 0.00 1.85
2490 3910 1.004979 CCATGGGTCCCGGTTCTTAAA 59.995 52.381 2.85 0.00 0.00 1.52
2491 3911 0.621609 CCATGGGTCCCGGTTCTTAA 59.378 55.000 2.85 0.00 0.00 1.85
2492 3912 1.276140 CCCATGGGTCCCGGTTCTTA 61.276 60.000 23.93 0.00 0.00 2.10
2493 3913 2.612493 CCCATGGGTCCCGGTTCTT 61.612 63.158 23.93 0.00 0.00 2.52
2494 3914 3.015145 CCCATGGGTCCCGGTTCT 61.015 66.667 23.93 0.00 0.00 3.01
2495 3915 4.123545 CCCCATGGGTCCCGGTTC 62.124 72.222 29.33 0.00 38.25 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.