Multiple sequence alignment - TraesCS7B01G421400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G421400 chr7B 100.000 4853 0 0 1 4853 690415082 690419934 0.000000e+00 8962.0
1 TraesCS7B01G421400 chr7B 81.667 3191 507 41 885 4025 690249295 690252457 0.000000e+00 2580.0
2 TraesCS7B01G421400 chr7B 85.903 2121 264 26 1486 3589 690299990 690302092 0.000000e+00 2228.0
3 TraesCS7B01G421400 chr7B 84.000 900 126 14 3160 4050 690257313 690258203 0.000000e+00 848.0
4 TraesCS7B01G421400 chr7B 88.471 425 48 1 4048 4472 690258293 690258716 3.350000e-141 512.0
5 TraesCS7B01G421400 chr7B 86.124 418 48 6 3641 4050 690302090 690302505 4.460000e-120 442.0
6 TraesCS7B01G421400 chr7B 85.714 329 43 4 4048 4373 690302595 690302922 1.290000e-90 344.0
7 TraesCS7B01G421400 chr7B 85.921 277 35 4 2875 3149 690254201 690254475 4.750000e-75 292.0
8 TraesCS7B01G421400 chr7B 100.000 137 0 0 4717 4853 675833345 675833481 2.240000e-63 254.0
9 TraesCS7B01G421400 chr7B 100.000 137 0 0 4717 4853 675849991 675850127 2.240000e-63 254.0
10 TraesCS7B01G421400 chr7B 100.000 136 0 0 4718 4853 618450288 618450423 8.060000e-63 252.0
11 TraesCS7B01G421400 chr7B 100.000 135 0 0 4717 4851 691275944 691275810 2.900000e-62 250.0
12 TraesCS7B01G421400 chr7B 86.047 86 9 2 4563 4645 690258828 690258913 6.690000e-14 89.8
13 TraesCS7B01G421400 chr7D 87.301 3205 343 44 885 4050 606317622 606320801 0.000000e+00 3605.0
14 TraesCS7B01G421400 chr7D 83.060 2562 394 35 1509 4050 606339615 606342156 0.000000e+00 2290.0
15 TraesCS7B01G421400 chr7D 85.018 1088 147 14 2972 4049 606536518 606537599 0.000000e+00 1092.0
16 TraesCS7B01G421400 chr7D 86.122 526 58 4 4048 4569 606537690 606538204 1.970000e-153 553.0
17 TraesCS7B01G421400 chr7D 88.158 456 46 6 4048 4497 606320891 606321344 1.990000e-148 536.0
18 TraesCS7B01G421400 chr7D 88.941 425 47 0 4048 4472 606342246 606342670 4.300000e-145 525.0
19 TraesCS7B01G421400 chr7D 86.420 81 8 2 4568 4645 606342803 606342883 8.650000e-13 86.1
20 TraesCS7B01G421400 chr7D 83.562 73 8 4 4575 4645 606321434 606321504 1.130000e-06 65.8
21 TraesCS7B01G421400 chrUn 90.623 2538 209 18 523 3044 83330647 83333171 0.000000e+00 3341.0
22 TraesCS7B01G421400 chrUn 83.051 3251 485 42 838 4050 83314805 83318027 0.000000e+00 2891.0
23 TraesCS7B01G421400 chrUn 90.078 897 83 6 3038 3933 83338421 83339312 0.000000e+00 1158.0
24 TraesCS7B01G421400 chrUn 85.417 528 57 8 4048 4569 83318117 83318630 9.250000e-147 531.0
25 TraesCS7B01G421400 chrUn 74.677 1082 235 35 2302 3368 34146781 34145724 1.240000e-120 444.0
26 TraesCS7B01G421400 chrUn 74.677 1082 235 35 2302 3368 282031087 282030030 1.240000e-120 444.0
27 TraesCS7B01G421400 chrUn 85.849 424 47 5 4148 4569 83339302 83339714 5.770000e-119 438.0
28 TraesCS7B01G421400 chrUn 83.376 391 50 7 667 1049 83342297 83342680 1.000000e-91 348.0
29 TraesCS7B01G421400 chrUn 93.133 233 14 2 11 241 83328645 83328877 1.670000e-89 340.0
30 TraesCS7B01G421400 chrUn 92.000 50 4 0 4392 4441 324826382 324826333 2.420000e-08 71.3
31 TraesCS7B01G421400 chr7A 83.581 2558 373 36 1509 4035 698588942 698591483 0.000000e+00 2357.0
32 TraesCS7B01G421400 chr7A 84.411 526 61 11 4048 4569 698591594 698592102 9.380000e-137 497.0
33 TraesCS7B01G421400 chr5A 100.000 135 0 0 4717 4851 548626998 548627132 2.900000e-62 250.0
34 TraesCS7B01G421400 chr3A 100.000 135 0 0 4717 4851 740692108 740691974 2.900000e-62 250.0
35 TraesCS7B01G421400 chr3A 100.000 135 0 0 4717 4851 740723702 740723568 2.900000e-62 250.0
36 TraesCS7B01G421400 chr1B 99.270 137 1 0 4717 4853 34697320 34697184 1.040000e-61 248.0
37 TraesCS7B01G421400 chr1B 98.473 131 2 0 4721 4851 7989858 7989728 1.050000e-56 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G421400 chr7B 690415082 690419934 4852 False 8962.000000 8962 100.000000 1 4853 1 chr7B.!!$F4 4852
1 TraesCS7B01G421400 chr7B 690299990 690302922 2932 False 1004.666667 2228 85.913667 1486 4373 3 chr7B.!!$F6 2887
2 TraesCS7B01G421400 chr7B 690249295 690258913 9618 False 864.360000 2580 85.221200 885 4645 5 chr7B.!!$F5 3760
3 TraesCS7B01G421400 chr7D 606317622 606321504 3882 False 1402.266667 3605 86.340333 885 4645 3 chr7D.!!$F1 3760
4 TraesCS7B01G421400 chr7D 606339615 606342883 3268 False 967.033333 2290 86.140333 1509 4645 3 chr7D.!!$F2 3136
5 TraesCS7B01G421400 chr7D 606536518 606538204 1686 False 822.500000 1092 85.570000 2972 4569 2 chr7D.!!$F3 1597
6 TraesCS7B01G421400 chrUn 83328645 83333171 4526 False 1840.500000 3341 91.878000 11 3044 2 chrUn.!!$F2 3033
7 TraesCS7B01G421400 chrUn 83314805 83318630 3825 False 1711.000000 2891 84.234000 838 4569 2 chrUn.!!$F1 3731
8 TraesCS7B01G421400 chrUn 83338421 83342680 4259 False 648.000000 1158 86.434333 667 4569 3 chrUn.!!$F3 3902
9 TraesCS7B01G421400 chrUn 34145724 34146781 1057 True 444.000000 444 74.677000 2302 3368 1 chrUn.!!$R1 1066
10 TraesCS7B01G421400 chrUn 282030030 282031087 1057 True 444.000000 444 74.677000 2302 3368 1 chrUn.!!$R2 1066
11 TraesCS7B01G421400 chr7A 698588942 698592102 3160 False 1427.000000 2357 83.996000 1509 4569 2 chr7A.!!$F1 3060

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 2180 0.035458 CCAAACTGACGAAGAGGGCT 59.965 55.0 0.0 0.0 0.00 5.19 F
815 2335 0.401356 TTGATGCTCCAGCCTTGACA 59.599 50.0 0.0 0.0 41.18 3.58 F
1564 3136 0.331278 TGGAATCGGGGCATCTGTTT 59.669 50.0 0.0 0.0 0.00 2.83 F
3434 10758 0.321122 CGAGCTGGAACTGGCTTTCT 60.321 55.0 0.0 0.0 38.06 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1549 3121 0.625849 AGGAAAACAGATGCCCCGAT 59.374 50.000 0.00 0.0 0.0 4.18 R
1882 3454 1.949525 CCAAGGAACACCACAGTTGAG 59.050 52.381 0.00 0.0 0.0 3.02 R
3438 10762 0.179032 TGTTCTGGTCAATGCACGGT 60.179 50.000 0.00 0.0 0.0 4.83 R
4736 12254 0.032130 TCCGGCGCTAAGATGCTTAG 59.968 55.000 7.64 9.3 0.0 2.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 6.658816 ACCTGCTATGTGTGATGTCATTTTTA 59.341 34.615 0.00 0.00 0.00 1.52
93 95 7.676004 TGATATATATGTGACAACCGTGGAAT 58.324 34.615 0.00 0.00 0.00 3.01
99 101 2.031157 GTGACAACCGTGGAATTTCTGG 60.031 50.000 0.00 0.00 0.00 3.86
107 109 3.873952 CCGTGGAATTTCTGGAGAATCTC 59.126 47.826 0.71 0.71 33.54 2.75
108 110 4.507710 CGTGGAATTTCTGGAGAATCTCA 58.492 43.478 12.79 0.00 33.54 3.27
115 117 7.175641 GGAATTTCTGGAGAATCTCACTGAAAA 59.824 37.037 23.16 13.45 35.18 2.29
123 125 9.354673 TGGAGAATCTCACTGAAAATTTTAACT 57.645 29.630 12.79 0.00 33.73 2.24
195 198 3.623060 TGTAGCTTCTCGCCATCATTTTC 59.377 43.478 0.00 0.00 40.39 2.29
203 206 5.568482 TCTCGCCATCATTTTCGTTATTTG 58.432 37.500 0.00 0.00 0.00 2.32
210 213 6.808212 CCATCATTTTCGTTATTTGTGCTCTT 59.192 34.615 0.00 0.00 0.00 2.85
235 238 5.222631 GTTAAATGGGTGAGCTTTGAACAG 58.777 41.667 0.00 0.00 0.00 3.16
241 244 3.496160 GGGTGAGCTTTGAACAGGAACTA 60.496 47.826 0.00 0.00 36.02 2.24
242 245 4.134563 GGTGAGCTTTGAACAGGAACTAA 58.865 43.478 0.00 0.00 36.02 2.24
243 246 4.214332 GGTGAGCTTTGAACAGGAACTAAG 59.786 45.833 0.00 0.00 36.02 2.18
244 247 4.214332 GTGAGCTTTGAACAGGAACTAAGG 59.786 45.833 0.00 0.00 36.02 2.69
245 248 4.102524 TGAGCTTTGAACAGGAACTAAGGA 59.897 41.667 0.00 0.00 36.02 3.36
246 249 4.646572 AGCTTTGAACAGGAACTAAGGAG 58.353 43.478 0.00 0.00 36.02 3.69
247 250 3.189495 GCTTTGAACAGGAACTAAGGAGC 59.811 47.826 0.00 0.00 36.02 4.70
248 251 2.743636 TGAACAGGAACTAAGGAGCG 57.256 50.000 0.00 0.00 36.02 5.03
249 252 1.337823 TGAACAGGAACTAAGGAGCGC 60.338 52.381 0.00 0.00 36.02 5.92
250 253 0.685097 AACAGGAACTAAGGAGCGCA 59.315 50.000 11.47 0.00 36.02 6.09
251 254 0.685097 ACAGGAACTAAGGAGCGCAA 59.315 50.000 11.47 0.00 36.02 4.85
252 255 1.338200 ACAGGAACTAAGGAGCGCAAG 60.338 52.381 11.47 0.80 36.02 4.01
253 256 0.250513 AGGAACTAAGGAGCGCAAGG 59.749 55.000 11.47 0.00 36.02 3.61
254 257 0.249398 GGAACTAAGGAGCGCAAGGA 59.751 55.000 11.47 0.00 38.28 3.36
255 258 1.646189 GAACTAAGGAGCGCAAGGAG 58.354 55.000 11.47 2.15 38.28 3.69
256 259 1.204941 GAACTAAGGAGCGCAAGGAGA 59.795 52.381 11.47 0.00 38.28 3.71
257 260 0.820871 ACTAAGGAGCGCAAGGAGAG 59.179 55.000 11.47 1.55 38.28 3.20
258 261 1.107114 CTAAGGAGCGCAAGGAGAGA 58.893 55.000 11.47 0.00 38.28 3.10
259 262 1.066908 CTAAGGAGCGCAAGGAGAGAG 59.933 57.143 11.47 0.00 38.28 3.20
260 263 0.613292 AAGGAGCGCAAGGAGAGAGA 60.613 55.000 11.47 0.00 38.28 3.10
261 264 0.396974 AGGAGCGCAAGGAGAGAGAT 60.397 55.000 11.47 0.00 38.28 2.75
262 265 1.133637 AGGAGCGCAAGGAGAGAGATA 60.134 52.381 11.47 0.00 38.28 1.98
263 266 1.269448 GGAGCGCAAGGAGAGAGATAG 59.731 57.143 11.47 0.00 38.28 2.08
264 267 1.269448 GAGCGCAAGGAGAGAGATAGG 59.731 57.143 11.47 0.00 38.28 2.57
265 268 1.036707 GCGCAAGGAGAGAGATAGGT 58.963 55.000 0.30 0.00 38.28 3.08
286 289 3.443099 TCATGCCAGATTCTGACGTAG 57.557 47.619 15.36 0.00 32.44 3.51
301 304 6.869695 TCTGACGTAGGCATTTTAGATTGTA 58.130 36.000 0.00 0.00 0.00 2.41
308 311 7.165812 CGTAGGCATTTTAGATTGTAACATTGC 59.834 37.037 0.00 0.00 0.00 3.56
311 314 6.256321 GGCATTTTAGATTGTAACATTGCTGG 59.744 38.462 0.00 0.00 0.00 4.85
315 318 8.586570 TTTTAGATTGTAACATTGCTGGTTTG 57.413 30.769 0.00 0.00 0.00 2.93
316 319 5.138125 AGATTGTAACATTGCTGGTTTGG 57.862 39.130 0.00 0.00 0.00 3.28
320 323 6.656632 TTGTAACATTGCTGGTTTGGAATA 57.343 33.333 0.00 0.00 0.00 1.75
329 332 6.909550 TGCTGGTTTGGAATATACTTGTTT 57.090 33.333 0.00 0.00 0.00 2.83
337 340 8.799367 GTTTGGAATATACTTGTTTACCTTGGT 58.201 33.333 0.00 0.00 0.00 3.67
351 354 2.897969 ACCTTGGTATCGACTGTCTTGT 59.102 45.455 6.21 0.00 0.00 3.16
356 359 4.329392 TGGTATCGACTGTCTTGTCAGTA 58.671 43.478 6.21 0.00 46.81 2.74
372 406 5.359756 TGTCAGTAGCATCATTATGTGTCC 58.640 41.667 0.00 0.00 35.38 4.02
388 422 6.591750 ATGTGTCCGAGACTATATTAAGGG 57.408 41.667 0.00 0.00 33.15 3.95
399 433 4.536489 ACTATATTAAGGGCCTCATGGGTC 59.464 45.833 6.46 0.00 39.42 4.46
407 1803 1.212935 GGCCTCATGGGTCTGTTATGT 59.787 52.381 0.00 0.00 36.61 2.29
408 1804 2.357154 GGCCTCATGGGTCTGTTATGTT 60.357 50.000 0.00 0.00 36.61 2.71
423 1819 1.708341 ATGTTGCCCAATATGCCTCC 58.292 50.000 0.00 0.00 0.00 4.30
428 1824 0.475906 GCCCAATATGCCTCCTCTGT 59.524 55.000 0.00 0.00 0.00 3.41
429 1825 1.699634 GCCCAATATGCCTCCTCTGTA 59.300 52.381 0.00 0.00 0.00 2.74
435 1831 2.409948 ATGCCTCCTCTGTACTTTGC 57.590 50.000 0.00 0.00 0.00 3.68
436 1832 1.352083 TGCCTCCTCTGTACTTTGCT 58.648 50.000 0.00 0.00 0.00 3.91
455 1898 0.251742 TTTCCCAGTGGCCCAGATTG 60.252 55.000 2.61 0.00 0.00 2.67
472 1915 2.741211 GTCCGCCGGACCTGTTTC 60.741 66.667 25.64 0.00 46.19 2.78
473 1916 4.011517 TCCGCCGGACCTGTTTCC 62.012 66.667 5.05 0.00 0.00 3.13
516 1985 3.303990 CGTGTGTTACTTTGATGCTGCTT 60.304 43.478 0.00 0.00 0.00 3.91
586 2105 3.118038 AGTGTATGGGGATAACACGCAAT 60.118 43.478 0.00 0.00 46.33 3.56
661 2180 0.035458 CCAAACTGACGAAGAGGGCT 59.965 55.000 0.00 0.00 0.00 5.19
678 2197 2.038659 GGCTAACCTCTGCTCTGATCT 58.961 52.381 0.00 0.00 0.00 2.75
687 2206 2.159184 TCTGCTCTGATCTAAAGCCACG 60.159 50.000 10.64 0.00 35.12 4.94
689 2208 1.576356 CTCTGATCTAAAGCCACGGC 58.424 55.000 0.00 0.00 42.33 5.68
710 2229 4.088648 GCACGTCAAATACTTGAAATCGG 58.911 43.478 0.00 0.00 43.18 4.18
717 2236 7.039882 GTCAAATACTTGAAATCGGGTCTCTA 58.960 38.462 0.00 0.00 43.18 2.43
730 2249 3.131223 CGGGTCTCTATTTCTCAAGCTGA 59.869 47.826 0.00 0.00 0.00 4.26
741 2260 2.109774 CTCAAGCTGATCCTCCTGTCT 58.890 52.381 0.00 0.00 0.00 3.41
794 2314 6.442513 AATAGTGGCATTTTGTTAGCTCTC 57.557 37.500 0.00 0.00 0.00 3.20
810 2330 1.209990 CTCTCTTTGATGCTCCAGCCT 59.790 52.381 0.00 0.00 41.18 4.58
815 2335 0.401356 TTGATGCTCCAGCCTTGACA 59.599 50.000 0.00 0.00 41.18 3.58
832 2352 5.280011 CCTTGACATTGTACCCTGTTCTAGT 60.280 44.000 0.00 0.00 0.00 2.57
914 2435 3.687102 TTGCTGTGCATGCAGGCC 61.687 61.111 30.25 18.19 41.71 5.19
935 2456 2.484065 CGTGGTTACAGAACTTCACCCA 60.484 50.000 0.00 0.00 35.74 4.51
939 2460 4.142038 GGTTACAGAACTTCACCCAATGT 58.858 43.478 0.00 0.00 35.74 2.71
986 2507 7.758528 GCTGCTTTTGTTTCTTGATCTTGATAT 59.241 33.333 0.00 0.00 0.00 1.63
1069 2596 8.753497 ATGAAATACTTACTCCTTTTCATCCC 57.247 34.615 3.95 0.00 40.96 3.85
1086 2613 6.825944 TCATCCCTCTAATTATGTCGAGAG 57.174 41.667 0.00 0.00 36.08 3.20
1274 2825 7.065803 CGGATATACACAAGGAAAGAAACATGT 59.934 37.037 0.00 0.00 0.00 3.21
1288 2839 8.682936 AAAGAAACATGTTAATCTCTCAGTGT 57.317 30.769 12.39 0.00 0.00 3.55
1296 2847 6.939622 TGTTAATCTCTCAGTGTCATGACAT 58.060 36.000 30.10 16.62 43.97 3.06
1308 2859 6.974622 CAGTGTCATGACATTAAATTAAGCCC 59.025 38.462 30.10 13.08 43.97 5.19
1310 2861 5.883115 TGTCATGACATTAAATTAAGCCCGA 59.117 36.000 24.56 0.00 36.21 5.14
1346 2904 4.326278 AGTTGTGTATAATTGACTGACGCG 59.674 41.667 3.53 3.53 0.00 6.01
1349 2907 4.103357 GTGTATAATTGACTGACGCGTCT 58.897 43.478 36.27 20.46 35.00 4.18
1353 2911 7.588854 GTGTATAATTGACTGACGCGTCTATTA 59.411 37.037 36.27 27.05 41.88 0.98
1360 2918 5.849604 TGACTGACGCGTCTATTATTTATCG 59.150 40.000 36.27 12.37 35.00 2.92
1430 2988 6.425210 TCTAGCAAGCATGGTCTAACATAT 57.575 37.500 0.00 0.00 38.46 1.78
1431 2989 6.226052 TCTAGCAAGCATGGTCTAACATATG 58.774 40.000 0.00 0.00 38.46 1.78
1460 3018 6.441924 TGGGTTTTAAATATCCAGATTGCCAA 59.558 34.615 0.00 0.00 0.00 4.52
1484 3042 6.239217 AGGTAGCACTATTGATGATCACAA 57.761 37.500 0.00 5.36 0.00 3.33
1549 3121 8.009513 TCATATATTTTCATGGTTGGGATGGAA 58.990 33.333 0.00 0.00 0.00 3.53
1564 3136 0.331278 TGGAATCGGGGCATCTGTTT 59.669 50.000 0.00 0.00 0.00 2.83
1604 3176 4.335315 AGAAGTGCTCTCATCTACGAGAAG 59.665 45.833 0.00 0.00 41.43 2.85
1608 3180 2.542824 GCTCTCATCTACGAGAAGCACC 60.543 54.545 0.00 0.00 41.43 5.01
1728 3300 7.707624 TGAAAGCTCAATAATGGATGTTCTT 57.292 32.000 0.00 0.00 0.00 2.52
1735 3307 8.295288 GCTCAATAATGGATGTTCTTGATAAGG 58.705 37.037 0.00 0.00 0.00 2.69
1756 3328 6.338591 AGGAGGATGAAGAGGATGATTTTT 57.661 37.500 0.00 0.00 0.00 1.94
1758 3330 7.286313 AGGAGGATGAAGAGGATGATTTTTAC 58.714 38.462 0.00 0.00 0.00 2.01
1782 3354 5.491982 GGAGTTGATGAAAGCTCTAGGAAA 58.508 41.667 0.00 0.00 0.00 3.13
1802 3374 7.931275 AGGAAAGAGATAAAAAGTGTGTCAAC 58.069 34.615 0.00 0.00 0.00 3.18
1870 3442 2.736721 CACAATGGTAGTGACAACGAGG 59.263 50.000 0.00 0.00 39.30 4.63
1901 3473 2.643551 ACTCAACTGTGGTGTTCCTTG 58.356 47.619 0.00 0.00 34.23 3.61
1939 3511 6.299141 AGTAACAATGTGATGATATGGACCC 58.701 40.000 0.00 0.00 0.00 4.46
1947 3519 5.192927 GTGATGATATGGACCCACAAAAGA 58.807 41.667 0.00 0.00 0.00 2.52
2095 3682 3.199508 AGAGGCTGACATCATAGTTGCTT 59.800 43.478 0.00 0.00 0.00 3.91
2126 3713 3.507233 TGCATCCAAGGAGTCAATCAAAC 59.493 43.478 0.00 0.00 0.00 2.93
2144 3740 6.900568 TCAAACAATGGTTGTCAATTGTTC 57.099 33.333 11.11 1.16 44.59 3.18
2173 3769 8.315482 TGTACAAACTATTCCTGCAATGTAGTA 58.685 33.333 0.00 0.00 0.00 1.82
2208 3807 5.999205 ATTCTAATTGGGTTGATGTTGCA 57.001 34.783 0.00 0.00 0.00 4.08
2278 3877 1.750206 AGACAAGTGTTGCATTGCACA 59.250 42.857 11.66 10.05 38.71 4.57
2295 3894 4.922206 TGCACAGAGAAATAACCTGGAAT 58.078 39.130 0.00 0.00 32.52 3.01
2322 3921 6.525628 GTGATGATAATGTGCTCACAAAGTTG 59.474 38.462 6.81 0.00 45.41 3.16
2327 3926 4.825546 ATGTGCTCACAAAGTTGAAGAG 57.174 40.909 6.81 6.07 45.41 2.85
2362 3961 6.431234 GCTTCCTTTCCTCATAGTGAAAGAAA 59.569 38.462 12.27 0.00 46.62 2.52
2632 4232 3.433031 CCTTGGTCTGGACAACTGTACAA 60.433 47.826 0.00 0.00 38.63 2.41
2816 4416 2.225727 GGCAGTACACAACTTGCTTACC 59.774 50.000 0.00 0.00 35.76 2.85
2881 4481 5.817816 CCTACAAGTGGACCAGATATTTCAC 59.182 44.000 0.00 0.00 0.00 3.18
3022 4622 4.665833 ATTCTGGATGGATGCAACAATG 57.334 40.909 0.00 0.00 0.00 2.82
3075 4675 3.496870 CCCAGTTGCTGAAGTCCTTTAGT 60.497 47.826 0.00 0.00 32.44 2.24
3084 4684 5.241728 GCTGAAGTCCTTTAGTTTTGATGGT 59.758 40.000 1.46 0.00 0.00 3.55
3105 4705 4.344865 GGGCCAGCTTTCCACCGA 62.345 66.667 4.39 0.00 0.00 4.69
3150 4753 1.981256 AACAAGAACGCCCATCAACT 58.019 45.000 0.00 0.00 0.00 3.16
3377 10701 5.010012 GTGCAATAATTTGGGACAGGGATAG 59.990 44.000 0.00 0.00 42.39 2.08
3434 10758 0.321122 CGAGCTGGAACTGGCTTTCT 60.321 55.000 0.00 0.00 38.06 2.52
3438 10762 1.878102 GCTGGAACTGGCTTTCTTCGA 60.878 52.381 0.00 0.00 0.00 3.71
3462 10786 3.236816 GTGCATTGACCAGAACAAATCG 58.763 45.455 0.00 0.00 0.00 3.34
3521 10845 3.454587 TTGCTCGGTCGTTGTGGCT 62.455 57.895 0.00 0.00 0.00 4.75
3621 10956 7.871973 CCAAATCAATCCAAAGTGACATACAAA 59.128 33.333 0.00 0.00 31.30 2.83
3715 11056 4.148079 TGTTCAAAGCATGGTTGGTGATA 58.852 39.130 11.56 2.42 32.86 2.15
3716 11057 4.771577 TGTTCAAAGCATGGTTGGTGATAT 59.228 37.500 11.56 0.00 32.86 1.63
3725 11066 1.148310 GTTGGTGATATCCCGATGCG 58.852 55.000 0.00 0.00 0.00 4.73
3765 11106 1.349688 ACTAACAACCTGGATCGGCAA 59.650 47.619 0.00 0.00 0.00 4.52
3775 11116 2.874701 CTGGATCGGCAAATCGAGATTT 59.125 45.455 5.32 5.32 42.69 2.17
3778 11119 4.202212 TGGATCGGCAAATCGAGATTTCTA 60.202 41.667 7.99 0.00 42.69 2.10
3809 11150 1.339438 ATGTCATGGACAGTGGACTGC 60.339 52.381 6.70 0.36 46.04 4.40
3824 11165 1.592081 GACTGCGAGATGTCATGAAGC 59.408 52.381 0.00 0.00 33.75 3.86
3864 11205 4.082625 GCATGTCCATGATGTCTCAACAAA 60.083 41.667 11.35 0.00 41.20 2.83
3883 11224 0.180406 ATGCTAGTTTGCCTACGGGG 59.820 55.000 0.00 0.00 38.36 5.73
3886 11230 1.415289 GCTAGTTTGCCTACGGGGTAT 59.585 52.381 0.00 0.00 37.43 2.73
3887 11231 2.805657 GCTAGTTTGCCTACGGGGTATG 60.806 54.545 0.00 0.00 37.43 2.39
3928 11272 1.616921 CATGGAGAGGTGCCCCAAT 59.383 57.895 0.00 0.00 33.15 3.16
3949 11293 0.104672 TGGGTGAAGTCTTCCCCTCA 60.105 55.000 26.68 16.01 39.50 3.86
3989 11334 1.674057 CTGGAGACCTTCTGGCGTT 59.326 57.895 0.00 0.00 36.63 4.84
4055 11498 1.938577 CAGCTTCAATGATGGAGACCG 59.061 52.381 0.00 0.00 33.56 4.79
4072 11515 0.250234 CCGTCCACATCATCCACTGT 59.750 55.000 0.00 0.00 0.00 3.55
4084 11527 0.108585 TCCACTGTGGAAACCTCAGC 59.891 55.000 26.54 0.00 45.00 4.26
4131 11577 4.351111 ATGGTACCCAGAGGAAATATCCAC 59.649 45.833 10.07 0.00 42.26 4.02
4196 11642 2.981909 TGCCAGAGTTGCAGCAGC 60.982 61.111 2.55 0.00 42.57 5.25
4234 11680 1.371558 GGCACCGAACCTCAAGACT 59.628 57.895 0.00 0.00 0.00 3.24
4291 11737 3.633116 GTGGTGGGTGCCCGTAGT 61.633 66.667 2.44 0.00 39.42 2.73
4348 11794 2.887889 CGTTTGGGACGCGCTTGAA 61.888 57.895 5.73 0.00 45.86 2.69
4441 11887 1.007721 AGGGTCTCTGTGCTCAGGTAT 59.992 52.381 15.39 0.00 41.59 2.73
4456 11902 5.278758 GCTCAGGTATTCTCTCCTACATGTC 60.279 48.000 0.00 0.00 32.88 3.06
4465 11911 4.115516 CTCTCCTACATGTCACAAATCCG 58.884 47.826 0.00 0.00 0.00 4.18
4466 11912 3.513912 TCTCCTACATGTCACAAATCCGT 59.486 43.478 0.00 0.00 0.00 4.69
4467 11913 4.020573 TCTCCTACATGTCACAAATCCGTT 60.021 41.667 0.00 0.00 0.00 4.44
4468 11914 4.647611 TCCTACATGTCACAAATCCGTTT 58.352 39.130 0.00 0.00 0.00 3.60
4501 11955 5.503927 ACTGCCAAGATCATACTCAATGTT 58.496 37.500 0.00 0.00 36.89 2.71
4502 11956 6.653020 ACTGCCAAGATCATACTCAATGTTA 58.347 36.000 0.00 0.00 36.89 2.41
4503 11957 6.765036 ACTGCCAAGATCATACTCAATGTTAG 59.235 38.462 0.00 0.00 36.89 2.34
4504 11958 5.528690 TGCCAAGATCATACTCAATGTTAGC 59.471 40.000 0.00 0.00 36.89 3.09
4505 11959 5.762218 GCCAAGATCATACTCAATGTTAGCT 59.238 40.000 0.00 0.00 36.89 3.32
4506 11960 6.931281 GCCAAGATCATACTCAATGTTAGCTA 59.069 38.462 0.00 0.00 36.89 3.32
4507 11961 7.095439 GCCAAGATCATACTCAATGTTAGCTAC 60.095 40.741 0.00 0.00 36.89 3.58
4508 11962 8.147058 CCAAGATCATACTCAATGTTAGCTACT 58.853 37.037 0.00 0.00 36.89 2.57
4512 11966 6.507900 TCATACTCAATGTTAGCTACTCAGC 58.492 40.000 0.00 0.00 41.26 4.26
4590 12104 2.501610 GGAGACCAGATGGACGCC 59.498 66.667 5.72 7.13 41.48 5.68
4598 12112 3.224324 GATGGACGCCCGCTCCTA 61.224 66.667 9.49 0.48 34.29 2.94
4605 12119 2.760385 GCCCGCTCCTACAGGTCT 60.760 66.667 0.00 0.00 36.34 3.85
4614 12128 3.357203 CTCCTACAGGTCTTGCTGTCTA 58.643 50.000 0.00 0.00 35.26 2.59
4646 12160 0.104120 GGTTTGTTGTGTGCTTCCCC 59.896 55.000 0.00 0.00 0.00 4.81
4655 12169 1.302993 GTGCTTCCCCGGTTGCTTA 60.303 57.895 0.00 0.00 0.00 3.09
4658 12172 0.526211 GCTTCCCCGGTTGCTTAAAG 59.474 55.000 0.00 0.00 0.00 1.85
4668 12182 3.057596 CGGTTGCTTAAAGGAGATTTGCA 60.058 43.478 0.00 0.00 30.36 4.08
4669 12183 4.237724 GGTTGCTTAAAGGAGATTTGCAC 58.762 43.478 0.00 0.00 31.59 4.57
4682 12196 4.934942 TGCACGTGGTGTCGGTCG 62.935 66.667 18.88 0.00 35.75 4.79
4711 12229 2.820787 ACTCCTAGTGCTACTGTGTGTC 59.179 50.000 0.00 0.00 0.00 3.67
4717 12235 1.521423 GTGCTACTGTGTGTCGTTGTC 59.479 52.381 0.00 0.00 0.00 3.18
4718 12236 1.135333 TGCTACTGTGTGTCGTTGTCA 59.865 47.619 0.00 0.00 0.00 3.58
4719 12237 2.198406 GCTACTGTGTGTCGTTGTCAA 58.802 47.619 0.00 0.00 0.00 3.18
4722 12240 2.695359 ACTGTGTGTCGTTGTCAAAGT 58.305 42.857 0.00 0.00 0.00 2.66
4724 12242 3.500680 ACTGTGTGTCGTTGTCAAAGTTT 59.499 39.130 0.00 0.00 0.00 2.66
4726 12244 5.179742 ACTGTGTGTCGTTGTCAAAGTTTTA 59.820 36.000 0.00 0.00 0.00 1.52
4728 12246 6.436261 TGTGTGTCGTTGTCAAAGTTTTAAA 58.564 32.000 0.00 0.00 0.00 1.52
4729 12247 7.085116 TGTGTGTCGTTGTCAAAGTTTTAAAT 58.915 30.769 0.00 0.00 0.00 1.40
4730 12248 8.235226 TGTGTGTCGTTGTCAAAGTTTTAAATA 58.765 29.630 0.00 0.00 0.00 1.40
4731 12249 8.730427 GTGTGTCGTTGTCAAAGTTTTAAATAG 58.270 33.333 0.00 0.00 0.00 1.73
4732 12250 7.429920 TGTGTCGTTGTCAAAGTTTTAAATAGC 59.570 33.333 0.00 0.00 0.00 2.97
4733 12251 6.629649 TGTCGTTGTCAAAGTTTTAAATAGCG 59.370 34.615 0.00 0.00 0.00 4.26
4734 12252 5.622041 TCGTTGTCAAAGTTTTAAATAGCGC 59.378 36.000 0.00 0.00 0.00 5.92
4736 12254 3.909574 TGTCAAAGTTTTAAATAGCGCGC 59.090 39.130 26.66 26.66 0.00 6.86
4737 12255 4.156182 GTCAAAGTTTTAAATAGCGCGCT 58.844 39.130 38.01 38.01 0.00 5.92
4738 12256 5.107026 TGTCAAAGTTTTAAATAGCGCGCTA 60.107 36.000 39.72 39.72 0.00 4.26
4739 12257 5.791480 GTCAAAGTTTTAAATAGCGCGCTAA 59.209 36.000 40.90 26.03 31.73 3.09
4754 12272 1.560860 GCTAAGCATCTTAGCGCCGG 61.561 60.000 18.95 0.00 38.12 6.13
4755 12273 0.032130 CTAAGCATCTTAGCGCCGGA 59.968 55.000 5.05 0.00 40.15 5.14
4756 12274 0.249322 TAAGCATCTTAGCGCCGGAC 60.249 55.000 5.05 0.00 40.15 4.79
4757 12275 2.925162 AAGCATCTTAGCGCCGGACC 62.925 60.000 5.05 0.00 40.15 4.46
4758 12276 2.815308 CATCTTAGCGCCGGACCT 59.185 61.111 5.05 1.80 0.00 3.85
4759 12277 1.300233 CATCTTAGCGCCGGACCTC 60.300 63.158 5.05 0.00 0.00 3.85
4760 12278 1.455959 ATCTTAGCGCCGGACCTCT 60.456 57.895 5.05 0.00 0.00 3.69
4761 12279 1.043673 ATCTTAGCGCCGGACCTCTT 61.044 55.000 5.05 0.00 0.00 2.85
4763 12281 0.806492 CTTAGCGCCGGACCTCTTTC 60.806 60.000 5.05 0.00 0.00 2.62
4765 12283 1.537814 TAGCGCCGGACCTCTTTCAA 61.538 55.000 5.05 0.00 0.00 2.69
4767 12285 1.305930 GCGCCGGACCTCTTTCAAAT 61.306 55.000 5.05 0.00 0.00 2.32
4770 12288 1.826385 CCGGACCTCTTTCAAATGCT 58.174 50.000 0.00 0.00 0.00 3.79
4771 12289 2.939640 GCCGGACCTCTTTCAAATGCTA 60.940 50.000 5.05 0.00 0.00 3.49
4772 12290 3.545703 CCGGACCTCTTTCAAATGCTAT 58.454 45.455 0.00 0.00 0.00 2.97
4774 12292 4.752101 CCGGACCTCTTTCAAATGCTATAG 59.248 45.833 0.00 0.00 0.00 1.31
4775 12293 4.212214 CGGACCTCTTTCAAATGCTATAGC 59.788 45.833 18.18 18.18 42.50 2.97
4778 12296 4.572389 ACCTCTTTCAAATGCTATAGCGTG 59.428 41.667 20.02 16.47 45.83 5.34
4781 12299 5.356426 TCTTTCAAATGCTATAGCGTGCTA 58.644 37.500 20.02 3.73 45.83 3.49
4782 12300 5.991606 TCTTTCAAATGCTATAGCGTGCTAT 59.008 36.000 20.02 17.65 45.83 2.97
4783 12301 7.151976 TCTTTCAAATGCTATAGCGTGCTATA 58.848 34.615 20.02 17.96 45.83 1.31
4789 12331 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
4790 12332 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
4812 12354 5.618561 GCTATAGCGCGCTATTTAAAATGT 58.381 37.500 46.76 28.88 39.65 2.71
4813 12355 6.077838 GCTATAGCGCGCTATTTAAAATGTT 58.922 36.000 46.76 28.22 39.65 2.71
4816 12358 4.481463 AGCGCGCTATTTAAAATGTTTGT 58.519 34.783 35.79 0.63 0.00 2.83
4818 12360 5.060446 AGCGCGCTATTTAAAATGTTTGTTC 59.940 36.000 35.79 0.00 0.00 3.18
4820 12362 6.453659 GCGCGCTATTTAAAATGTTTGTTCAT 60.454 34.615 26.67 0.00 0.00 2.57
4822 12364 7.949428 CGCGCTATTTAAAATGTTTGTTCATTT 59.051 29.630 5.56 0.00 45.94 2.32
4823 12365 9.039500 GCGCTATTTAAAATGTTTGTTCATTTG 57.961 29.630 0.00 0.00 44.10 2.32
4832 12374 5.152623 TGTTTGTTCATTTGTTTGGACCA 57.847 34.783 0.00 0.00 0.00 4.02
4833 12375 5.551233 TGTTTGTTCATTTGTTTGGACCAA 58.449 33.333 1.69 1.69 0.00 3.67
4834 12376 5.997746 TGTTTGTTCATTTGTTTGGACCAAA 59.002 32.000 15.89 15.89 36.34 3.28
4835 12377 6.148480 TGTTTGTTCATTTGTTTGGACCAAAG 59.852 34.615 20.14 8.25 35.45 2.77
4837 12379 5.415221 TGTTCATTTGTTTGGACCAAAGTC 58.585 37.500 20.14 10.01 42.73 3.01
4838 12380 5.186797 TGTTCATTTGTTTGGACCAAAGTCT 59.813 36.000 20.14 2.95 43.05 3.24
4839 12381 5.514274 TCATTTGTTTGGACCAAAGTCTC 57.486 39.130 20.14 8.94 43.05 3.36
4841 12383 5.656416 TCATTTGTTTGGACCAAAGTCTCTT 59.344 36.000 20.14 1.05 43.05 2.85
4842 12384 6.831353 TCATTTGTTTGGACCAAAGTCTCTTA 59.169 34.615 20.14 1.24 43.05 2.10
4844 12386 4.134563 TGTTTGGACCAAAGTCTCTTAGC 58.865 43.478 20.14 5.76 43.05 3.09
4845 12387 2.743636 TGGACCAAAGTCTCTTAGCG 57.256 50.000 0.00 0.00 43.05 4.26
4847 12389 1.337823 GGACCAAAGTCTCTTAGCGCA 60.338 52.381 11.47 0.00 43.05 6.09
4848 12390 2.413837 GACCAAAGTCTCTTAGCGCAA 58.586 47.619 11.47 0.50 40.10 4.85
4850 12392 2.037251 ACCAAAGTCTCTTAGCGCAAGA 59.963 45.455 11.47 15.40 41.10 3.02
4851 12393 3.265791 CCAAAGTCTCTTAGCGCAAGAT 58.734 45.455 11.47 0.00 42.44 2.40
4852 12394 3.308323 CCAAAGTCTCTTAGCGCAAGATC 59.692 47.826 11.47 12.04 42.44 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.127980 TGTTCCATGACAACACGAACTAAAAA 60.128 34.615 6.19 0.00 38.42 1.94
2 3 4.876679 TGTTCCATGACAACACGAACTAAA 59.123 37.500 6.19 0.00 38.42 1.85
3 4 4.443621 TGTTCCATGACAACACGAACTAA 58.556 39.130 6.19 0.00 38.42 2.24
4 5 4.061357 TGTTCCATGACAACACGAACTA 57.939 40.909 6.19 0.00 38.42 2.24
5 6 2.912771 TGTTCCATGACAACACGAACT 58.087 42.857 6.19 0.00 38.42 3.01
6 7 3.896648 ATGTTCCATGACAACACGAAC 57.103 42.857 11.18 6.97 36.59 3.95
7 8 6.567687 AATAATGTTCCATGACAACACGAA 57.432 33.333 11.18 2.91 36.59 3.85
8 9 7.550906 TCATAATAATGTTCCATGACAACACGA 59.449 33.333 11.18 4.68 36.59 4.35
9 10 7.693020 TCATAATAATGTTCCATGACAACACG 58.307 34.615 11.18 0.00 36.59 4.49
34 35 4.397420 TCACACATAGCAGGTTTGAACAT 58.603 39.130 0.00 0.00 0.00 2.71
67 68 7.239763 TCCACGGTTGTCACATATATATCAT 57.760 36.000 0.00 0.00 0.00 2.45
93 95 8.469309 AAATTTTCAGTGAGATTCTCCAGAAA 57.531 30.769 11.12 13.80 37.61 2.52
139 142 3.550437 ATCAGTCAGAGCCATACCAAC 57.450 47.619 0.00 0.00 0.00 3.77
144 147 4.558226 ACAACAATCAGTCAGAGCCATA 57.442 40.909 0.00 0.00 0.00 2.74
195 198 6.307800 CCATTTAACCAAGAGCACAAATAACG 59.692 38.462 0.00 0.00 0.00 3.18
203 206 3.153919 TCACCCATTTAACCAAGAGCAC 58.846 45.455 0.00 0.00 0.00 4.40
210 213 3.838565 TCAAAGCTCACCCATTTAACCA 58.161 40.909 0.00 0.00 0.00 3.67
235 238 0.249398 TCCTTGCGCTCCTTAGTTCC 59.751 55.000 9.73 0.00 0.00 3.62
241 244 0.613292 TCTCTCTCCTTGCGCTCCTT 60.613 55.000 9.73 0.00 0.00 3.36
242 245 0.396974 ATCTCTCTCCTTGCGCTCCT 60.397 55.000 9.73 0.00 0.00 3.69
243 246 1.269448 CTATCTCTCTCCTTGCGCTCC 59.731 57.143 9.73 0.00 0.00 4.70
244 247 1.269448 CCTATCTCTCTCCTTGCGCTC 59.731 57.143 9.73 0.00 0.00 5.03
245 248 1.327303 CCTATCTCTCTCCTTGCGCT 58.673 55.000 9.73 0.00 0.00 5.92
246 249 1.036707 ACCTATCTCTCTCCTTGCGC 58.963 55.000 0.00 0.00 0.00 6.09
247 250 2.690497 TGAACCTATCTCTCTCCTTGCG 59.310 50.000 0.00 0.00 0.00 4.85
248 251 4.630111 CATGAACCTATCTCTCTCCTTGC 58.370 47.826 0.00 0.00 0.00 4.01
249 252 4.502950 GGCATGAACCTATCTCTCTCCTTG 60.503 50.000 0.00 0.00 0.00 3.61
250 253 3.645687 GGCATGAACCTATCTCTCTCCTT 59.354 47.826 0.00 0.00 0.00 3.36
251 254 3.238597 GGCATGAACCTATCTCTCTCCT 58.761 50.000 0.00 0.00 0.00 3.69
252 255 2.968574 TGGCATGAACCTATCTCTCTCC 59.031 50.000 0.00 0.00 0.00 3.71
253 256 3.894427 TCTGGCATGAACCTATCTCTCTC 59.106 47.826 0.00 0.00 0.00 3.20
254 257 3.921104 TCTGGCATGAACCTATCTCTCT 58.079 45.455 0.00 0.00 0.00 3.10
255 258 4.888326 ATCTGGCATGAACCTATCTCTC 57.112 45.455 0.00 0.00 0.00 3.20
256 259 4.906664 AGAATCTGGCATGAACCTATCTCT 59.093 41.667 0.00 0.00 0.00 3.10
257 260 4.996122 CAGAATCTGGCATGAACCTATCTC 59.004 45.833 1.53 0.00 0.00 2.75
258 261 4.657504 TCAGAATCTGGCATGAACCTATCT 59.342 41.667 10.71 0.00 31.51 1.98
259 262 4.754114 GTCAGAATCTGGCATGAACCTATC 59.246 45.833 10.35 0.00 35.96 2.08
260 263 4.712476 GTCAGAATCTGGCATGAACCTAT 58.288 43.478 10.35 0.00 35.96 2.57
261 264 3.430790 CGTCAGAATCTGGCATGAACCTA 60.431 47.826 15.64 0.00 35.60 3.08
262 265 2.679059 CGTCAGAATCTGGCATGAACCT 60.679 50.000 15.64 0.00 35.60 3.50
263 266 1.667724 CGTCAGAATCTGGCATGAACC 59.332 52.381 15.64 0.00 35.60 3.62
264 267 2.350522 ACGTCAGAATCTGGCATGAAC 58.649 47.619 15.64 1.76 35.60 3.18
265 268 2.768253 ACGTCAGAATCTGGCATGAA 57.232 45.000 15.64 0.00 35.60 2.57
286 289 6.256321 CCAGCAATGTTACAATCTAAAATGCC 59.744 38.462 0.00 0.00 0.00 4.40
301 304 7.039082 ACAAGTATATTCCAAACCAGCAATGTT 60.039 33.333 0.00 0.00 0.00 2.71
308 311 8.575649 AGGTAAACAAGTATATTCCAAACCAG 57.424 34.615 0.00 0.00 0.00 4.00
311 314 8.799367 ACCAAGGTAAACAAGTATATTCCAAAC 58.201 33.333 0.00 0.00 0.00 2.93
315 318 8.985805 CGATACCAAGGTAAACAAGTATATTCC 58.014 37.037 2.62 0.00 33.99 3.01
316 319 9.754382 TCGATACCAAGGTAAACAAGTATATTC 57.246 33.333 2.62 0.00 33.99 1.75
320 323 7.039882 CAGTCGATACCAAGGTAAACAAGTAT 58.960 38.462 2.62 0.00 33.99 2.12
329 332 4.084287 ACAAGACAGTCGATACCAAGGTA 58.916 43.478 0.73 0.73 34.87 3.08
337 340 4.007659 TGCTACTGACAAGACAGTCGATA 58.992 43.478 8.37 0.00 46.36 2.92
351 354 4.340950 TCGGACACATAATGATGCTACTGA 59.659 41.667 0.00 0.00 36.43 3.41
356 359 3.386078 AGTCTCGGACACATAATGATGCT 59.614 43.478 6.78 0.00 36.43 3.79
372 406 5.394663 CCATGAGGCCCTTAATATAGTCTCG 60.395 48.000 0.00 0.00 0.00 4.04
384 418 1.142688 AACAGACCCATGAGGCCCTT 61.143 55.000 0.00 0.00 40.58 3.95
388 422 2.684881 CAACATAACAGACCCATGAGGC 59.315 50.000 0.00 0.00 40.58 4.70
399 433 3.638160 AGGCATATTGGGCAACATAACAG 59.362 43.478 0.00 0.00 39.74 3.16
407 1803 1.133699 CAGAGGAGGCATATTGGGCAA 60.134 52.381 0.00 0.00 35.46 4.52
408 1804 0.475475 CAGAGGAGGCATATTGGGCA 59.525 55.000 0.00 0.00 35.46 5.36
423 1819 3.499918 CACTGGGAAAGCAAAGTACAGAG 59.500 47.826 0.00 0.00 0.00 3.35
428 1824 1.616159 GCCACTGGGAAAGCAAAGTA 58.384 50.000 0.00 0.00 35.59 2.24
429 1825 1.115326 GGCCACTGGGAAAGCAAAGT 61.115 55.000 0.00 0.00 35.59 2.66
435 1831 0.040204 AATCTGGGCCACTGGGAAAG 59.960 55.000 0.00 0.00 35.59 2.62
436 1832 0.251742 CAATCTGGGCCACTGGGAAA 60.252 55.000 0.00 0.00 35.59 3.13
493 1962 2.665519 GCAGCATCAAAGTAACACACGG 60.666 50.000 0.00 0.00 0.00 4.94
496 1965 4.136796 AGAAGCAGCATCAAAGTAACACA 58.863 39.130 0.00 0.00 0.00 3.72
508 1977 3.128242 GCAGTGATGTAAAGAAGCAGCAT 59.872 43.478 0.00 0.00 33.50 3.79
516 1985 3.937079 CAGAGCATGCAGTGATGTAAAGA 59.063 43.478 21.98 0.00 0.00 2.52
600 2119 7.016153 TCAGCCCTTCATTCTCTAAACTAAA 57.984 36.000 0.00 0.00 0.00 1.85
618 2137 4.038402 CCTATGAAACATGGAAATCAGCCC 59.962 45.833 0.00 0.00 0.00 5.19
661 2180 4.100189 GGCTTTAGATCAGAGCAGAGGTTA 59.900 45.833 14.34 0.00 38.14 2.85
667 2186 2.200067 CGTGGCTTTAGATCAGAGCAG 58.800 52.381 14.34 4.54 38.14 4.24
678 2197 0.814410 TTTGACGTGCCGTGGCTTTA 60.814 50.000 12.84 0.00 41.37 1.85
687 2206 4.088648 CGATTTCAAGTATTTGACGTGCC 58.911 43.478 0.00 0.00 42.79 5.01
689 2208 4.153475 ACCCGATTTCAAGTATTTGACGTG 59.847 41.667 0.00 0.00 42.79 4.49
710 2229 5.070313 AGGATCAGCTTGAGAAATAGAGACC 59.930 44.000 0.00 0.00 0.00 3.85
717 2236 3.522750 ACAGGAGGATCAGCTTGAGAAAT 59.477 43.478 0.00 0.00 36.25 2.17
730 2249 3.245803 ACCTTGACAGTAGACAGGAGGAT 60.246 47.826 0.00 0.00 0.00 3.24
741 2260 3.760151 AGTATGTGCGTACCTTGACAGTA 59.240 43.478 0.00 0.00 0.00 2.74
794 2314 1.471684 GTCAAGGCTGGAGCATCAAAG 59.528 52.381 0.00 0.00 44.36 2.77
810 2330 5.305902 TCACTAGAACAGGGTACAATGTCAA 59.694 40.000 0.00 0.00 0.00 3.18
815 2335 7.553044 GCTATTTTCACTAGAACAGGGTACAAT 59.447 37.037 0.00 0.00 32.39 2.71
832 2352 2.279935 AACACCCCGTGCTATTTTCA 57.720 45.000 0.00 0.00 36.98 2.69
914 2435 2.140717 GGGTGAAGTTCTGTAACCACG 58.859 52.381 11.15 0.00 36.15 4.94
935 2456 5.126061 GGCAGATGAACCAATCTAACACATT 59.874 40.000 0.00 0.00 35.09 2.71
939 2460 3.270027 CGGCAGATGAACCAATCTAACA 58.730 45.455 0.00 0.00 35.09 2.41
986 2507 9.128404 CAGGAATCCTCATGATGAAATTCTTTA 57.872 33.333 20.47 0.00 35.30 1.85
987 2508 7.618512 ACAGGAATCCTCATGATGAAATTCTTT 59.381 33.333 20.47 12.08 36.83 2.52
988 2509 7.124052 ACAGGAATCCTCATGATGAAATTCTT 58.876 34.615 20.47 14.75 36.83 2.52
1004 2525 7.288158 ACAAGAGTATTACCTCTACAGGAATCC 59.712 40.741 0.00 0.00 43.65 3.01
1059 2586 8.144478 TCTCGACATAATTAGAGGGATGAAAAG 58.856 37.037 0.00 0.00 0.00 2.27
1069 2596 7.923344 ACCATGAAACTCTCGACATAATTAGAG 59.077 37.037 0.00 0.00 41.03 2.43
1184 2721 7.742963 ACGTAGTTGTGTTTTCGCATTTATAAG 59.257 33.333 0.00 0.00 37.78 1.73
1219 2757 6.839134 TCCCAGACTTATAGAGCATTCTAACA 59.161 38.462 0.00 0.00 39.29 2.41
1274 2825 9.942850 TTTAATGTCATGACACTGAGAGATTAA 57.057 29.630 30.09 22.21 45.05 1.40
1288 2839 6.260050 GTCTCGGGCTTAATTTAATGTCATGA 59.740 38.462 0.00 0.00 0.00 3.07
1296 2847 4.824289 ACTTCGTCTCGGGCTTAATTTAA 58.176 39.130 0.00 0.00 0.00 1.52
1305 2856 1.134560 ACTCAATACTTCGTCTCGGGC 59.865 52.381 0.00 0.00 0.00 6.13
1308 2859 4.227538 ACACAACTCAATACTTCGTCTCG 58.772 43.478 0.00 0.00 0.00 4.04
1310 2861 9.871238 AATTATACACAACTCAATACTTCGTCT 57.129 29.630 0.00 0.00 0.00 4.18
1320 2871 6.128661 GCGTCAGTCAATTATACACAACTCAA 60.129 38.462 0.00 0.00 0.00 3.02
1326 2877 3.840468 ACGCGTCAGTCAATTATACACA 58.160 40.909 5.58 0.00 0.00 3.72
1337 2890 6.075918 TCGATAAATAATAGACGCGTCAGTC 58.924 40.000 37.85 19.73 41.23 3.51
1353 2911 8.873830 CAAAACTCTGAGTACACATCGATAAAT 58.126 33.333 11.30 0.00 0.00 1.40
1360 2918 5.107453 CGAACCAAAACTCTGAGTACACATC 60.107 44.000 11.30 5.27 0.00 3.06
1378 2936 6.693466 TCACTAATCTAATTCACACGAACCA 58.307 36.000 0.00 0.00 32.81 3.67
1415 2973 6.003950 ACCCATAACATATGTTAGACCATGC 58.996 40.000 27.40 0.00 42.94 4.06
1431 2989 9.476202 GCAATCTGGATATTTAAAACCCATAAC 57.524 33.333 6.93 0.00 0.00 1.89
1445 3003 4.141181 TGCTACCTTTGGCAATCTGGATAT 60.141 41.667 17.38 2.74 35.40 1.63
1446 3004 3.201930 TGCTACCTTTGGCAATCTGGATA 59.798 43.478 17.38 8.14 35.40 2.59
1460 3018 6.239217 TGTGATCATCAATAGTGCTACCTT 57.761 37.500 0.00 0.00 0.00 3.50
1484 3042 7.997803 CCTGAAGAATTTGGAATATCTCCTCTT 59.002 37.037 5.79 6.00 45.64 2.85
1549 3121 0.625849 AGGAAAACAGATGCCCCGAT 59.374 50.000 0.00 0.00 0.00 4.18
1564 3136 5.453903 GCACTTCTGCTATGGATCTAAGGAA 60.454 44.000 0.00 0.00 40.63 3.36
1591 3163 1.112113 GGGGTGCTTCTCGTAGATGA 58.888 55.000 0.00 0.00 33.89 2.92
1598 3170 1.601419 TAGTTCCGGGGTGCTTCTCG 61.601 60.000 0.00 0.00 0.00 4.04
1604 3176 0.679960 AAAGCATAGTTCCGGGGTGC 60.680 55.000 0.00 5.47 36.11 5.01
1608 3180 4.336889 TCTATCAAAGCATAGTTCCGGG 57.663 45.455 0.00 0.00 0.00 5.73
1728 3300 5.720162 TCATCCTCTTCATCCTCCTTATCA 58.280 41.667 0.00 0.00 0.00 2.15
1735 3307 6.203723 CCGTAAAAATCATCCTCTTCATCCTC 59.796 42.308 0.00 0.00 0.00 3.71
1756 3328 4.098044 CCTAGAGCTTTCATCAACTCCGTA 59.902 45.833 0.00 0.00 0.00 4.02
1758 3330 3.131223 TCCTAGAGCTTTCATCAACTCCG 59.869 47.826 0.00 0.00 0.00 4.63
1782 3354 7.500992 TCTCTGTTGACACACTTTTTATCTCT 58.499 34.615 0.00 0.00 0.00 3.10
1790 3362 8.627208 ATTATTGATCTCTGTTGACACACTTT 57.373 30.769 0.00 0.00 0.00 2.66
1838 3410 7.866898 TGTCACTACCATTGTGAAAAATCAATG 59.133 33.333 9.88 9.88 44.63 2.82
1839 3411 7.950512 TGTCACTACCATTGTGAAAAATCAAT 58.049 30.769 0.00 0.00 44.63 2.57
1851 3423 3.040147 ACCTCGTTGTCACTACCATTG 57.960 47.619 0.00 0.00 0.00 2.82
1870 3442 2.802816 CACAGTTGAGTAGGTCAGCAAC 59.197 50.000 0.00 0.00 38.83 4.17
1882 3454 1.949525 CCAAGGAACACCACAGTTGAG 59.050 52.381 0.00 0.00 0.00 3.02
1939 3511 4.916983 TGGTCAACATCCTTCTTTTGTG 57.083 40.909 0.00 0.00 0.00 3.33
2016 3588 8.972127 GCTAGATACTCCATCCTATCATAAACA 58.028 37.037 0.00 0.00 33.75 2.83
2112 3699 4.895297 ACAACCATTGTTTGATTGACTCCT 59.105 37.500 0.51 0.00 42.22 3.69
2126 3713 6.907206 ACAAAGAACAATTGACAACCATTG 57.093 33.333 13.59 9.76 0.00 2.82
2137 3733 9.965824 CAGGAATAGTTTGTACAAAGAACAATT 57.034 29.630 21.12 14.76 36.75 2.32
2144 3740 7.370383 ACATTGCAGGAATAGTTTGTACAAAG 58.630 34.615 21.12 8.24 0.00 2.77
2267 3866 4.523943 AGGTTATTTCTCTGTGCAATGCAA 59.476 37.500 10.44 0.00 41.47 4.08
2278 3877 7.405292 TCATCACAATTCCAGGTTATTTCTCT 58.595 34.615 0.00 0.00 0.00 3.10
2322 3921 3.855858 AGGAAGCTCGAAATGTCTCTTC 58.144 45.455 0.00 0.00 0.00 2.87
2327 3926 3.339141 AGGAAAGGAAGCTCGAAATGTC 58.661 45.455 0.00 0.00 0.00 3.06
2632 4232 5.163416 CCTTTCCTTCACCTGTTTTGTCATT 60.163 40.000 0.00 0.00 0.00 2.57
2816 4416 1.136500 GAAGGTTAGGTAGTCGCCCTG 59.864 57.143 0.00 0.00 33.35 4.45
2863 4463 4.080863 GTCTGGTGAAATATCTGGTCCACT 60.081 45.833 0.00 0.00 0.00 4.00
2881 4481 0.957395 AAGGAGTTGCATGCGTCTGG 60.957 55.000 14.09 0.00 0.00 3.86
3022 4622 5.195001 TCAGGCACAAGGACATTTTTAAC 57.805 39.130 0.00 0.00 0.00 2.01
3075 4675 1.830477 GCTGGCCCATAACCATCAAAA 59.170 47.619 0.00 0.00 36.36 2.44
3084 4684 0.324275 GGTGGAAAGCTGGCCCATAA 60.324 55.000 0.00 0.00 31.94 1.90
3105 4705 1.743394 GGTAGCTTAACAATTGGCGCT 59.257 47.619 7.64 13.07 0.00 5.92
3150 4753 1.340991 GCACCCTCCTTAATTGCTGGA 60.341 52.381 0.00 0.00 0.00 3.86
3377 10701 5.699839 ACAATTTCAAACGGAAGCTATCAC 58.300 37.500 0.00 0.00 36.72 3.06
3434 10758 0.948623 CTGGTCAATGCACGGTCGAA 60.949 55.000 0.00 0.00 0.00 3.71
3438 10762 0.179032 TGTTCTGGTCAATGCACGGT 60.179 50.000 0.00 0.00 0.00 4.83
3462 10786 1.845809 CGTGCACCTCCAGCTGAAAC 61.846 60.000 17.39 1.57 0.00 2.78
3621 10956 9.599056 TCTCCATATATGTCAATCTTCTTCTCT 57.401 33.333 11.73 0.00 0.00 3.10
3639 10974 3.244491 GCAGGCTGACTTGATCTCCATAT 60.244 47.826 20.86 0.00 0.00 1.78
3682 11023 5.356190 CCATGCTTTGAACATCACTGTATCT 59.644 40.000 0.00 0.00 33.36 1.98
3684 11025 5.012239 ACCATGCTTTGAACATCACTGTAT 58.988 37.500 0.00 0.00 33.36 2.29
3765 11106 4.640647 GCCACCCTTTTAGAAATCTCGATT 59.359 41.667 0.00 0.00 0.00 3.34
3775 11116 3.355378 CATGACATGCCACCCTTTTAGA 58.645 45.455 1.71 0.00 0.00 2.10
3778 11119 1.203162 TCCATGACATGCCACCCTTTT 60.203 47.619 10.10 0.00 0.00 2.27
3809 11150 1.645034 AACCGCTTCATGACATCTCG 58.355 50.000 0.00 0.00 0.00 4.04
3883 11224 0.464554 GCCTGAGCAACCTCCCATAC 60.465 60.000 0.00 0.00 39.53 2.39
3949 11293 8.055181 TCCAGCTCCTTAAATTCATATGTTTCT 58.945 33.333 1.90 0.00 0.00 2.52
3989 11334 2.191513 CGGGCCGTTAGGAGATCGA 61.192 63.158 19.97 0.00 41.02 3.59
4072 11515 3.620488 GAATACATGGCTGAGGTTTCCA 58.380 45.455 0.00 0.00 0.00 3.53
4076 11519 2.632377 CACGAATACATGGCTGAGGTT 58.368 47.619 0.00 0.00 0.00 3.50
4185 11631 1.078918 TCGCATAGCTGCTGCAACT 60.079 52.632 18.42 10.72 46.65 3.16
4196 11642 2.868583 CCACCATCTTGAACTCGCATAG 59.131 50.000 0.00 0.00 0.00 2.23
4234 11680 4.349048 CCCCAACATCCTCTGATCTTGATA 59.651 45.833 0.00 0.00 30.84 2.15
4291 11737 1.078214 CGGCTTCTTCATGCCTCCA 60.078 57.895 0.00 0.00 46.42 3.86
4333 11779 2.331893 CCATTCAAGCGCGTCCCAA 61.332 57.895 8.43 0.00 0.00 4.12
4345 11791 1.264749 CCACCTCCTCGTCCCATTCA 61.265 60.000 0.00 0.00 0.00 2.57
4348 11794 3.083997 GCCACCTCCTCGTCCCAT 61.084 66.667 0.00 0.00 0.00 4.00
4398 11844 6.436532 CCTGGGTAGTTTCTTCTTGTAGTAGA 59.563 42.308 0.00 0.00 0.00 2.59
4441 11887 5.624509 CGGATTTGTGACATGTAGGAGAGAA 60.625 44.000 0.00 0.00 0.00 2.87
4474 11920 7.281774 ACATTGAGTATGATCTTGGCAGTTTAG 59.718 37.037 0.00 0.00 37.69 1.85
4504 11958 4.021016 AGGGTGAGTAACAAAGCTGAGTAG 60.021 45.833 0.00 0.00 0.00 2.57
4505 11959 3.901844 AGGGTGAGTAACAAAGCTGAGTA 59.098 43.478 0.00 0.00 0.00 2.59
4506 11960 2.706190 AGGGTGAGTAACAAAGCTGAGT 59.294 45.455 0.00 0.00 0.00 3.41
4507 11961 3.409026 AGGGTGAGTAACAAAGCTGAG 57.591 47.619 0.00 0.00 0.00 3.35
4508 11962 3.857157 AAGGGTGAGTAACAAAGCTGA 57.143 42.857 0.00 0.00 0.00 4.26
4590 12104 1.153549 GCAAGACCTGTAGGAGCGG 60.154 63.158 4.64 0.00 38.94 5.52
4605 12119 4.548494 CAAACACATGCAATAGACAGCAA 58.452 39.130 0.00 0.00 44.88 3.91
4614 12128 4.094590 CACAACAAACCAAACACATGCAAT 59.905 37.500 0.00 0.00 0.00 3.56
4646 12160 3.057596 TGCAAATCTCCTTTAAGCAACCG 60.058 43.478 0.00 0.00 0.00 4.44
4655 12169 1.608590 CACCACGTGCAAATCTCCTTT 59.391 47.619 10.91 0.00 0.00 3.11
4658 12172 0.517316 GACACCACGTGCAAATCTCC 59.483 55.000 10.91 0.00 36.98 3.71
4668 12182 4.318021 CGACGACCGACACCACGT 62.318 66.667 0.00 0.00 41.76 4.49
4669 12183 4.016629 TCGACGACCGACACCACG 62.017 66.667 0.00 0.00 43.23 4.94
4682 12196 1.301423 AGCACTAGGAGTCGATCGAC 58.699 55.000 35.26 35.26 44.86 4.20
4690 12208 2.820787 GACACACAGTAGCACTAGGAGT 59.179 50.000 0.00 0.00 0.00 3.85
4697 12215 1.521423 GACAACGACACACAGTAGCAC 59.479 52.381 0.00 0.00 0.00 4.40
4711 12229 5.439694 CGCGCTATTTAAAACTTTGACAACG 60.440 40.000 5.56 0.00 0.00 4.10
4717 12235 5.275280 GCTTAGCGCGCTATTTAAAACTTTG 60.275 40.000 38.51 15.49 0.00 2.77
4718 12236 4.791676 GCTTAGCGCGCTATTTAAAACTTT 59.208 37.500 38.51 13.72 0.00 2.66
4719 12237 4.142773 TGCTTAGCGCGCTATTTAAAACTT 60.143 37.500 38.51 13.94 43.27 2.66
4722 12240 4.272504 AGATGCTTAGCGCGCTATTTAAAA 59.727 37.500 38.51 24.43 43.27 1.52
4724 12242 3.390135 AGATGCTTAGCGCGCTATTTAA 58.610 40.909 38.51 25.53 43.27 1.52
4726 12244 1.871080 AGATGCTTAGCGCGCTATTT 58.129 45.000 38.51 23.54 43.27 1.40
4728 12246 2.600731 CTAAGATGCTTAGCGCGCTAT 58.399 47.619 38.51 26.50 43.27 2.97
4729 12247 1.930817 GCTAAGATGCTTAGCGCGCTA 60.931 52.381 35.48 35.48 43.27 4.26
4730 12248 1.218230 GCTAAGATGCTTAGCGCGCT 61.218 55.000 38.01 38.01 43.27 5.92
4731 12249 1.202816 GCTAAGATGCTTAGCGCGC 59.797 57.895 26.66 26.66 43.27 6.86
4736 12254 0.032130 TCCGGCGCTAAGATGCTTAG 59.968 55.000 7.64 9.30 0.00 2.18
4737 12255 0.249322 GTCCGGCGCTAAGATGCTTA 60.249 55.000 7.64 0.00 0.00 3.09
4738 12256 1.521681 GTCCGGCGCTAAGATGCTT 60.522 57.895 7.64 0.00 0.00 3.91
4739 12257 2.107141 GTCCGGCGCTAAGATGCT 59.893 61.111 7.64 0.00 0.00 3.79
4742 12260 1.043673 AAGAGGTCCGGCGCTAAGAT 61.044 55.000 7.64 0.00 0.00 2.40
4743 12261 1.255667 AAAGAGGTCCGGCGCTAAGA 61.256 55.000 7.64 0.00 0.00 2.10
4744 12262 0.806492 GAAAGAGGTCCGGCGCTAAG 60.806 60.000 7.64 0.00 0.00 2.18
4745 12263 1.217244 GAAAGAGGTCCGGCGCTAA 59.783 57.895 7.64 0.00 0.00 3.09
4746 12264 1.537814 TTGAAAGAGGTCCGGCGCTA 61.538 55.000 7.64 0.00 0.00 4.26
4747 12265 2.391724 TTTGAAAGAGGTCCGGCGCT 62.392 55.000 7.64 0.00 0.00 5.92
4748 12266 1.305930 ATTTGAAAGAGGTCCGGCGC 61.306 55.000 0.00 0.00 0.00 6.53
4749 12267 0.447801 CATTTGAAAGAGGTCCGGCG 59.552 55.000 0.00 0.00 0.00 6.46
4751 12269 1.826385 AGCATTTGAAAGAGGTCCGG 58.174 50.000 0.00 0.00 0.00 5.14
4752 12270 4.212214 GCTATAGCATTTGAAAGAGGTCCG 59.788 45.833 20.01 0.00 41.59 4.79
4754 12272 4.811557 ACGCTATAGCATTTGAAAGAGGTC 59.188 41.667 23.99 0.00 42.21 3.85
4755 12273 4.572389 CACGCTATAGCATTTGAAAGAGGT 59.428 41.667 23.99 6.60 42.21 3.85
4756 12274 4.553547 GCACGCTATAGCATTTGAAAGAGG 60.554 45.833 23.99 5.98 42.21 3.69
4757 12275 4.272018 AGCACGCTATAGCATTTGAAAGAG 59.728 41.667 23.99 6.48 42.21 2.85
4758 12276 4.191544 AGCACGCTATAGCATTTGAAAGA 58.808 39.130 23.99 0.00 42.21 2.52
4759 12277 4.542662 AGCACGCTATAGCATTTGAAAG 57.457 40.909 23.99 7.87 42.21 2.62
4760 12278 7.351414 CTATAGCACGCTATAGCATTTGAAA 57.649 36.000 25.42 9.51 46.26 2.69
4761 12279 6.951256 CTATAGCACGCTATAGCATTTGAA 57.049 37.500 25.42 9.81 46.26 2.69
4770 12288 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
4771 12289 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
4772 12290 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
4774 12292 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
4782 12300 2.868196 CGCGCTATAGCTCCGCTA 59.132 61.111 21.98 0.00 45.55 4.26
4789 12331 5.618561 ACATTTTAAATAGCGCGCTATAGC 58.381 37.500 43.81 15.09 38.20 2.97
4790 12332 7.586300 ACAAACATTTTAAATAGCGCGCTATAG 59.414 33.333 43.81 29.40 38.20 1.31
4794 12336 4.481463 ACAAACATTTTAAATAGCGCGCT 58.519 34.783 38.01 38.01 0.00 5.92
4797 12339 9.039500 CAAATGAACAAACATTTTAAATAGCGC 57.961 29.630 0.00 0.00 44.63 5.92
4805 12347 8.669243 GGTCCAAACAAATGAACAAACATTTTA 58.331 29.630 0.00 0.00 44.63 1.52
4807 12349 6.656693 TGGTCCAAACAAATGAACAAACATTT 59.343 30.769 0.00 0.00 46.85 2.32
4808 12350 6.176183 TGGTCCAAACAAATGAACAAACATT 58.824 32.000 0.00 0.00 41.43 2.71
4812 12354 6.234177 ACTTTGGTCCAAACAAATGAACAAA 58.766 32.000 13.26 0.00 41.86 2.83
4813 12355 5.799213 ACTTTGGTCCAAACAAATGAACAA 58.201 33.333 13.26 0.00 37.22 2.83
4816 12358 5.656416 AGAGACTTTGGTCCAAACAAATGAA 59.344 36.000 13.26 0.00 43.05 2.57
4818 12360 5.520376 AGAGACTTTGGTCCAAACAAATG 57.480 39.130 13.26 6.01 43.05 2.32
4820 12362 5.067283 GCTAAGAGACTTTGGTCCAAACAAA 59.933 40.000 13.26 0.00 43.05 2.83
4822 12364 4.134563 GCTAAGAGACTTTGGTCCAAACA 58.865 43.478 13.26 0.00 43.05 2.83
4823 12365 3.186613 CGCTAAGAGACTTTGGTCCAAAC 59.813 47.826 13.26 4.96 43.05 2.93
4824 12366 3.399330 CGCTAAGAGACTTTGGTCCAAA 58.601 45.455 16.26 16.26 43.05 3.28
4826 12368 1.337823 GCGCTAAGAGACTTTGGTCCA 60.338 52.381 0.00 0.00 43.05 4.02
4827 12369 1.337823 TGCGCTAAGAGACTTTGGTCC 60.338 52.381 9.73 0.00 43.05 4.46
4828 12370 2.080286 TGCGCTAAGAGACTTTGGTC 57.920 50.000 9.73 0.00 42.41 4.02
4829 12371 2.037251 TCTTGCGCTAAGAGACTTTGGT 59.963 45.455 9.73 0.00 40.43 3.67
4830 12372 2.688507 TCTTGCGCTAAGAGACTTTGG 58.311 47.619 9.73 0.00 40.43 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.