Multiple sequence alignment - TraesCS7B01G420800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G420800 chr7B 100.000 1967 0 0 1 1967 690029230 690031196 0.000000e+00 3633.0
1 TraesCS7B01G420800 chr7B 96.688 1087 31 1 881 1967 690094234 690095315 0.000000e+00 1803.0
2 TraesCS7B01G420800 chr7B 96.044 1087 38 1 881 1967 690119695 690120776 0.000000e+00 1764.0
3 TraesCS7B01G420800 chr7B 80.247 1053 150 30 930 1961 677961315 677962330 0.000000e+00 739.0
4 TraesCS7B01G420800 chr7B 100.000 192 0 0 2236 2427 690031465 690031656 2.970000e-94 355.0
5 TraesCS7B01G420800 chr7B 89.734 263 23 4 409 669 690119200 690119460 1.390000e-87 333.0
6 TraesCS7B01G420800 chr7B 95.631 206 9 0 210 415 211370897 211370692 5.000000e-87 331.0
7 TraesCS7B01G420800 chr7B 89.695 262 24 3 409 669 690093740 690093999 5.000000e-87 331.0
8 TraesCS7B01G420800 chr7B 95.215 209 8 2 210 418 42843916 42843710 1.800000e-86 329.0
9 TraesCS7B01G420800 chr7B 89.883 257 14 6 413 669 690198901 690199145 1.080000e-83 320.0
10 TraesCS7B01G420800 chr7B 96.392 194 5 1 2236 2427 690120811 690121004 3.890000e-83 318.0
11 TraesCS7B01G420800 chr7B 95.876 194 6 1 2236 2427 690081558 690081751 1.810000e-81 313.0
12 TraesCS7B01G420800 chr7B 95.361 194 7 1 2236 2427 690095350 690095543 8.430000e-80 307.0
13 TraesCS7B01G420800 chr7B 91.327 196 13 1 2236 2427 690200624 690200819 5.150000e-67 265.0
14 TraesCS7B01G420800 chr7B 89.189 185 17 2 1 183 690092255 690092438 6.750000e-56 228.0
15 TraesCS7B01G420800 chr7B 87.027 185 19 3 488 669 690915200 690915382 1.140000e-48 204.0
16 TraesCS7B01G420800 chr7D 93.459 1116 54 9 852 1967 605947250 605948346 0.000000e+00 1639.0
17 TraesCS7B01G420800 chr7D 91.887 1097 70 10 881 1967 606010719 606011806 0.000000e+00 1515.0
18 TraesCS7B01G420800 chr7D 92.929 792 46 3 1180 1967 606181448 606182233 0.000000e+00 1144.0
19 TraesCS7B01G420800 chr7D 92.317 794 49 4 1180 1967 606107122 606107909 0.000000e+00 1118.0
20 TraesCS7B01G420800 chr7D 90.881 329 22 3 852 1173 606106736 606107063 3.710000e-118 435.0
21 TraesCS7B01G420800 chr7D 84.697 379 30 10 409 781 605946683 605947039 1.070000e-93 353.0
22 TraesCS7B01G420800 chr7D 91.154 260 18 5 413 669 606180369 606180626 4.970000e-92 348.0
23 TraesCS7B01G420800 chr7D 94.271 192 11 0 2236 2427 606107943 606108134 6.560000e-76 294.0
24 TraesCS7B01G420800 chr7D 93.750 192 12 0 2236 2427 606011839 606012030 3.050000e-74 289.0
25 TraesCS7B01G420800 chr7D 90.952 210 18 1 1 209 606300997 606301206 5.110000e-72 281.0
26 TraesCS7B01G420800 chr7D 93.373 166 11 0 2238 2403 606182268 606182433 1.860000e-61 246.0
27 TraesCS7B01G420800 chr7D 90.104 192 13 4 2236 2427 606302769 606302954 6.700000e-61 244.0
28 TraesCS7B01G420800 chr7D 86.730 211 24 4 1 209 605970353 605970561 5.220000e-57 231.0
29 TraesCS7B01G420800 chr7D 93.023 129 9 0 2236 2364 605948380 605948508 3.190000e-44 189.0
30 TraesCS7B01G420800 chr7D 98.058 103 2 0 755 857 605946992 605947094 1.920000e-41 180.0
31 TraesCS7B01G420800 chr7D 97.468 79 1 1 776 854 606106519 606106596 1.510000e-27 134.0
32 TraesCS7B01G420800 chr7D 96.203 79 3 0 776 854 606180845 606180923 1.960000e-26 130.0
33 TraesCS7B01G420800 chr7D 93.056 72 5 0 2356 2427 605957465 605957536 3.300000e-19 106.0
34 TraesCS7B01G420800 chr7D 98.113 53 1 0 705 757 606106490 606106542 2.570000e-15 93.5
35 TraesCS7B01G420800 chr7D 96.429 56 2 0 702 757 606180813 606180868 2.570000e-15 93.5
36 TraesCS7B01G420800 chr7A 92.774 1121 69 5 852 1967 697975689 697976802 0.000000e+00 1611.0
37 TraesCS7B01G420800 chr7A 91.964 1120 78 5 852 1967 697878131 697879242 0.000000e+00 1559.0
38 TraesCS7B01G420800 chr7A 91.339 1120 66 13 852 1967 697823484 697824576 0.000000e+00 1502.0
39 TraesCS7B01G420800 chr7A 89.037 374 18 6 409 781 697975160 697975511 2.210000e-120 442.0
40 TraesCS7B01G420800 chr7A 89.286 364 18 4 418 781 697877611 697877953 1.030000e-118 436.0
41 TraesCS7B01G420800 chr7A 93.774 257 15 1 413 669 697822969 697823224 3.790000e-103 385.0
42 TraesCS7B01G420800 chr7A 94.211 190 10 1 2236 2424 697824601 697824790 3.050000e-74 289.0
43 TraesCS7B01G420800 chr7A 92.308 195 12 2 2236 2427 697879267 697879461 8.550000e-70 274.0
44 TraesCS7B01G420800 chr7A 92.308 195 12 2 2236 2427 697976827 697977021 8.550000e-70 274.0
45 TraesCS7B01G420800 chr7A 96.774 124 4 0 410 533 698131624 698131747 8.790000e-50 207.0
46 TraesCS7B01G420800 chr7A 98.765 81 1 0 755 835 697877906 697877986 6.990000e-31 145.0
47 TraesCS7B01G420800 chr7A 98.765 81 1 0 755 835 697975464 697975544 6.990000e-31 145.0
48 TraesCS7B01G420800 chr7A 95.062 81 4 0 755 835 697823259 697823339 7.040000e-26 128.0
49 TraesCS7B01G420800 chr7A 84.426 122 14 4 94 212 632669074 632668955 5.480000e-22 115.0
50 TraesCS7B01G420800 chr4B 95.673 208 7 2 211 418 642715207 642715412 1.390000e-87 333.0
51 TraesCS7B01G420800 chr3A 96.078 204 8 0 210 413 735599332 735599535 1.390000e-87 333.0
52 TraesCS7B01G420800 chr3A 85.321 109 14 2 94 201 648872838 648872731 7.090000e-21 111.0
53 TraesCS7B01G420800 chr1B 95.673 208 7 2 210 417 269218460 269218255 1.390000e-87 333.0
54 TraesCS7B01G420800 chr1B 85.124 121 13 4 92 209 172250337 172250219 4.240000e-23 119.0
55 TraesCS7B01G420800 chr4A 95.215 209 8 2 210 418 708433691 708433897 1.800000e-86 329.0
56 TraesCS7B01G420800 chr4D 95.192 208 7 3 210 417 8274619 8274415 2.330000e-85 326.0
57 TraesCS7B01G420800 chr3B 95.169 207 8 2 210 416 593064875 593065079 2.330000e-85 326.0
58 TraesCS7B01G420800 chr5B 93.953 215 11 2 210 424 548557107 548556895 8.370000e-85 324.0
59 TraesCS7B01G420800 chr6A 86.441 118 9 5 94 207 393957452 393957566 3.280000e-24 122.0
60 TraesCS7B01G420800 chr6A 85.321 109 14 2 94 201 564880317 564880210 7.090000e-21 111.0
61 TraesCS7B01G420800 chr3D 85.470 117 14 2 94 208 536888255 536888370 4.240000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G420800 chr7B 690029230 690031656 2426 False 1994.00 3633 100.000000 1 2427 2 chr7B.!!$F4 2426
1 TraesCS7B01G420800 chr7B 690119200 690121004 1804 False 805.00 1764 94.056667 409 2427 3 chr7B.!!$F6 2018
2 TraesCS7B01G420800 chr7B 677961315 677962330 1015 False 739.00 739 80.247000 930 1961 1 chr7B.!!$F1 1031
3 TraesCS7B01G420800 chr7B 690092255 690095543 3288 False 667.25 1803 92.733250 1 2427 4 chr7B.!!$F5 2426
4 TraesCS7B01G420800 chr7B 690198901 690200819 1918 False 292.50 320 90.605000 413 2427 2 chr7B.!!$F7 2014
5 TraesCS7B01G420800 chr7D 606010719 606012030 1311 False 902.00 1515 92.818500 881 2427 2 chr7D.!!$F4 1546
6 TraesCS7B01G420800 chr7D 605946683 605948508 1825 False 590.25 1639 92.309250 409 2364 4 chr7D.!!$F3 1955
7 TraesCS7B01G420800 chr7D 606106490 606108134 1644 False 414.90 1118 94.610000 705 2427 5 chr7D.!!$F5 1722
8 TraesCS7B01G420800 chr7D 606180369 606182433 2064 False 392.30 1144 94.017600 413 2403 5 chr7D.!!$F6 1990
9 TraesCS7B01G420800 chr7D 606300997 606302954 1957 False 262.50 281 90.528000 1 2427 2 chr7D.!!$F7 2426
10 TraesCS7B01G420800 chr7A 697975160 697977021 1861 False 618.00 1611 93.221000 409 2427 4 chr7A.!!$F4 2018
11 TraesCS7B01G420800 chr7A 697877611 697879461 1850 False 603.50 1559 93.080750 418 2427 4 chr7A.!!$F3 2009
12 TraesCS7B01G420800 chr7A 697822969 697824790 1821 False 576.00 1502 93.596500 413 2424 4 chr7A.!!$F2 2011

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 1583 0.028505 TCGGTGCTTATAGTCGTCGC 59.971 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1534 3510 1.407936 ATAGGATCTCACGTGCTGCT 58.592 50.0 11.67 10.88 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.768344 AGTGGTATCCCCTGCCCG 60.768 66.667 0.00 0.00 0.00 6.13
65 66 1.694150 CCAGAGTTCAAGTCCCAGACA 59.306 52.381 0.00 0.00 34.60 3.41
79 80 2.165167 CCAGACATGACATTGGTGCTT 58.835 47.619 0.00 0.00 0.00 3.91
80 81 2.094906 CCAGACATGACATTGGTGCTTG 60.095 50.000 0.00 0.00 0.00 4.01
132 133 0.693622 TCTCAGTCTCTCGGAGGTGT 59.306 55.000 4.96 0.00 38.55 4.16
144 145 1.411612 CGGAGGTGTTCATAGGGGTAC 59.588 57.143 0.00 0.00 0.00 3.34
149 150 2.696707 GGTGTTCATAGGGGTACGATGA 59.303 50.000 0.00 0.00 39.10 2.92
150 151 3.323979 GGTGTTCATAGGGGTACGATGAT 59.676 47.826 0.00 0.00 40.26 2.45
183 1454 6.183360 CGTTCCTAGGGATGAGTGTATGTTTA 60.183 42.308 9.46 0.00 0.00 2.01
200 1471 5.778161 TGTTTATGTATGTGAGCGACTTG 57.222 39.130 0.00 0.00 0.00 3.16
209 1480 2.000447 GTGAGCGACTTGGATTGTACC 59.000 52.381 0.00 0.00 0.00 3.34
211 1482 0.892755 AGCGACTTGGATTGTACCGA 59.107 50.000 0.00 0.00 0.00 4.69
212 1483 0.997196 GCGACTTGGATTGTACCGAC 59.003 55.000 0.00 0.00 0.00 4.79
215 1486 2.921754 CGACTTGGATTGTACCGACTTC 59.078 50.000 0.00 0.00 0.00 3.01
216 1487 3.259902 GACTTGGATTGTACCGACTTCC 58.740 50.000 0.00 0.00 32.30 3.46
217 1488 2.027469 ACTTGGATTGTACCGACTTCCC 60.027 50.000 0.00 0.00 31.25 3.97
218 1489 0.533491 TGGATTGTACCGACTTCCCG 59.467 55.000 0.00 0.00 31.25 5.14
219 1490 0.819582 GGATTGTACCGACTTCCCGA 59.180 55.000 0.00 0.00 0.00 5.14
220 1491 1.470458 GGATTGTACCGACTTCCCGAC 60.470 57.143 0.00 0.00 0.00 4.79
221 1492 1.475682 GATTGTACCGACTTCCCGACT 59.524 52.381 0.00 0.00 0.00 4.18
222 1493 0.599558 TTGTACCGACTTCCCGACTG 59.400 55.000 0.00 0.00 0.00 3.51
223 1494 0.538057 TGTACCGACTTCCCGACTGT 60.538 55.000 0.00 0.00 0.00 3.55
224 1495 0.169894 GTACCGACTTCCCGACTGTC 59.830 60.000 0.00 0.00 0.00 3.51
225 1496 0.037303 TACCGACTTCCCGACTGTCT 59.963 55.000 6.21 0.00 0.00 3.41
226 1497 0.037303 ACCGACTTCCCGACTGTCTA 59.963 55.000 6.21 0.00 0.00 2.59
227 1498 0.450983 CCGACTTCCCGACTGTCTAC 59.549 60.000 6.21 0.00 0.00 2.59
228 1499 1.451067 CGACTTCCCGACTGTCTACT 58.549 55.000 6.21 0.00 0.00 2.57
229 1500 1.130749 CGACTTCCCGACTGTCTACTG 59.869 57.143 6.21 0.00 0.00 2.74
230 1501 0.889306 ACTTCCCGACTGTCTACTGC 59.111 55.000 6.21 0.00 0.00 4.40
231 1502 0.888619 CTTCCCGACTGTCTACTGCA 59.111 55.000 6.21 0.00 0.00 4.41
232 1503 1.272490 CTTCCCGACTGTCTACTGCAA 59.728 52.381 6.21 0.00 0.00 4.08
233 1504 0.601558 TCCCGACTGTCTACTGCAAC 59.398 55.000 6.21 0.00 0.00 4.17
234 1505 0.317160 CCCGACTGTCTACTGCAACA 59.683 55.000 6.21 0.00 0.00 3.33
235 1506 1.270094 CCCGACTGTCTACTGCAACAA 60.270 52.381 6.21 0.00 0.00 2.83
236 1507 2.061773 CCGACTGTCTACTGCAACAAG 58.938 52.381 6.21 0.00 0.00 3.16
237 1508 2.545952 CCGACTGTCTACTGCAACAAGT 60.546 50.000 6.21 0.00 0.00 3.16
238 1509 3.123804 CGACTGTCTACTGCAACAAGTT 58.876 45.455 6.21 0.00 0.00 2.66
239 1510 3.060272 CGACTGTCTACTGCAACAAGTTG 60.060 47.826 8.53 8.53 43.14 3.16
240 1511 3.871594 GACTGTCTACTGCAACAAGTTGT 59.128 43.478 13.82 1.64 42.31 3.32
241 1512 3.623060 ACTGTCTACTGCAACAAGTTGTG 59.377 43.478 9.79 5.25 42.31 3.33
242 1513 2.354510 TGTCTACTGCAACAAGTTGTGC 59.645 45.455 9.79 15.02 42.31 4.57
243 1514 1.946768 TCTACTGCAACAAGTTGTGCC 59.053 47.619 20.42 11.68 42.31 5.01
244 1515 1.001378 CTACTGCAACAAGTTGTGCCC 60.001 52.381 20.42 9.71 42.31 5.36
245 1516 1.299316 CTGCAACAAGTTGTGCCCG 60.299 57.895 20.42 12.02 42.31 6.13
246 1517 2.027460 GCAACAAGTTGTGCCCGG 59.973 61.111 9.79 0.00 42.31 5.73
247 1518 2.027460 CAACAAGTTGTGCCCGGC 59.973 61.111 9.79 1.04 35.92 6.13
248 1519 2.123897 AACAAGTTGTGCCCGGCT 60.124 55.556 9.79 0.00 0.00 5.52
249 1520 2.193536 AACAAGTTGTGCCCGGCTC 61.194 57.895 9.79 7.85 0.00 4.70
250 1521 3.365265 CAAGTTGTGCCCGGCTCC 61.365 66.667 11.61 1.66 0.00 4.70
267 1538 3.550431 CGGCGATGGAGGGGTGAT 61.550 66.667 0.00 0.00 0.00 3.06
268 1539 2.111878 GGCGATGGAGGGGTGATG 59.888 66.667 0.00 0.00 0.00 3.07
269 1540 2.443394 GGCGATGGAGGGGTGATGA 61.443 63.158 0.00 0.00 0.00 2.92
270 1541 1.227674 GCGATGGAGGGGTGATGAC 60.228 63.158 0.00 0.00 0.00 3.06
271 1542 1.068083 CGATGGAGGGGTGATGACG 59.932 63.158 0.00 0.00 0.00 4.35
272 1543 1.447643 GATGGAGGGGTGATGACGG 59.552 63.158 0.00 0.00 0.00 4.79
273 1544 2.666596 GATGGAGGGGTGATGACGGC 62.667 65.000 0.00 0.00 0.00 5.68
274 1545 4.530857 GGAGGGGTGATGACGGCG 62.531 72.222 4.80 4.80 0.00 6.46
275 1546 4.530857 GAGGGGTGATGACGGCGG 62.531 72.222 13.24 0.00 0.00 6.13
297 1568 4.436998 CCTTCGGCTCGCTTCGGT 62.437 66.667 0.00 0.00 0.00 4.69
298 1569 3.181967 CTTCGGCTCGCTTCGGTG 61.182 66.667 0.00 0.00 0.00 4.94
302 1573 2.125673 GGCTCGCTTCGGTGCTTA 60.126 61.111 0.00 0.00 0.00 3.09
303 1574 1.521681 GGCTCGCTTCGGTGCTTAT 60.522 57.895 0.00 0.00 0.00 1.73
304 1575 0.249322 GGCTCGCTTCGGTGCTTATA 60.249 55.000 0.00 0.00 0.00 0.98
305 1576 1.132588 GCTCGCTTCGGTGCTTATAG 58.867 55.000 0.00 0.00 0.00 1.31
306 1577 1.536284 GCTCGCTTCGGTGCTTATAGT 60.536 52.381 0.00 0.00 0.00 2.12
307 1578 2.386249 CTCGCTTCGGTGCTTATAGTC 58.614 52.381 0.00 0.00 0.00 2.59
308 1579 1.121240 CGCTTCGGTGCTTATAGTCG 58.879 55.000 0.00 0.00 0.00 4.18
309 1580 1.533338 CGCTTCGGTGCTTATAGTCGT 60.533 52.381 0.00 0.00 0.00 4.34
310 1581 2.117910 GCTTCGGTGCTTATAGTCGTC 58.882 52.381 0.00 0.00 0.00 4.20
311 1582 2.373269 CTTCGGTGCTTATAGTCGTCG 58.627 52.381 0.00 0.00 0.00 5.12
312 1583 0.028505 TCGGTGCTTATAGTCGTCGC 59.971 55.000 0.00 0.00 0.00 5.19
313 1584 0.029035 CGGTGCTTATAGTCGTCGCT 59.971 55.000 0.00 0.00 0.00 4.93
314 1585 1.262417 CGGTGCTTATAGTCGTCGCTA 59.738 52.381 0.00 0.00 0.00 4.26
315 1586 2.662249 CGGTGCTTATAGTCGTCGCTAG 60.662 54.545 0.00 0.00 0.00 3.42
316 1587 2.350580 GGTGCTTATAGTCGTCGCTAGG 60.351 54.545 0.00 0.00 0.00 3.02
317 1588 2.290093 GTGCTTATAGTCGTCGCTAGGT 59.710 50.000 0.00 0.00 0.00 3.08
318 1589 2.289820 TGCTTATAGTCGTCGCTAGGTG 59.710 50.000 0.00 0.00 0.00 4.00
319 1590 2.350580 GCTTATAGTCGTCGCTAGGTGG 60.351 54.545 0.00 0.00 0.00 4.61
320 1591 2.627515 TATAGTCGTCGCTAGGTGGT 57.372 50.000 0.00 0.00 0.00 4.16
321 1592 1.307097 ATAGTCGTCGCTAGGTGGTC 58.693 55.000 0.00 0.00 0.00 4.02
322 1593 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
323 1594 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
324 1595 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
325 1596 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
326 1597 1.086067 CGTCGCTAGGTGGTCTACGA 61.086 60.000 0.00 0.00 32.96 3.43
327 1598 1.089920 GTCGCTAGGTGGTCTACGAA 58.910 55.000 0.00 0.00 35.22 3.85
328 1599 1.674962 GTCGCTAGGTGGTCTACGAAT 59.325 52.381 0.00 0.00 35.22 3.34
329 1600 2.874701 GTCGCTAGGTGGTCTACGAATA 59.125 50.000 0.00 0.00 35.22 1.75
330 1601 3.501445 GTCGCTAGGTGGTCTACGAATAT 59.499 47.826 0.00 0.00 35.22 1.28
331 1602 3.501062 TCGCTAGGTGGTCTACGAATATG 59.499 47.826 0.00 0.00 32.69 1.78
332 1603 3.366070 CGCTAGGTGGTCTACGAATATGG 60.366 52.174 0.00 0.00 0.00 2.74
333 1604 3.825014 GCTAGGTGGTCTACGAATATGGA 59.175 47.826 0.00 0.00 0.00 3.41
334 1605 4.463186 GCTAGGTGGTCTACGAATATGGAT 59.537 45.833 0.00 0.00 0.00 3.41
335 1606 4.873746 AGGTGGTCTACGAATATGGATG 57.126 45.455 0.00 0.00 0.00 3.51
336 1607 4.223953 AGGTGGTCTACGAATATGGATGT 58.776 43.478 0.00 0.00 0.00 3.06
337 1608 5.391256 AGGTGGTCTACGAATATGGATGTA 58.609 41.667 0.00 0.00 0.00 2.29
338 1609 5.836898 AGGTGGTCTACGAATATGGATGTAA 59.163 40.000 0.00 0.00 0.00 2.41
339 1610 6.497259 AGGTGGTCTACGAATATGGATGTAAT 59.503 38.462 0.00 0.00 0.00 1.89
340 1611 6.812160 GGTGGTCTACGAATATGGATGTAATC 59.188 42.308 0.00 0.00 44.55 1.75
341 1612 7.309867 GGTGGTCTACGAATATGGATGTAATCT 60.310 40.741 0.00 0.00 44.71 2.40
342 1613 8.088981 GTGGTCTACGAATATGGATGTAATCTT 58.911 37.037 0.00 0.00 44.71 2.40
343 1614 8.647796 TGGTCTACGAATATGGATGTAATCTTT 58.352 33.333 0.00 0.00 44.71 2.52
364 1635 9.886132 ATCTTTATTTCTGGTATTCGTTGTACT 57.114 29.630 0.00 0.00 0.00 2.73
365 1636 9.146984 TCTTTATTTCTGGTATTCGTTGTACTG 57.853 33.333 0.00 0.00 0.00 2.74
366 1637 5.796350 ATTTCTGGTATTCGTTGTACTGC 57.204 39.130 0.00 0.00 0.00 4.40
367 1638 3.241067 TCTGGTATTCGTTGTACTGCC 57.759 47.619 0.00 0.00 0.00 4.85
368 1639 2.563620 TCTGGTATTCGTTGTACTGCCA 59.436 45.455 0.00 0.00 0.00 4.92
369 1640 3.196901 TCTGGTATTCGTTGTACTGCCAT 59.803 43.478 0.00 0.00 0.00 4.40
370 1641 3.266636 TGGTATTCGTTGTACTGCCATG 58.733 45.455 0.00 0.00 0.00 3.66
371 1642 3.055747 TGGTATTCGTTGTACTGCCATGA 60.056 43.478 0.00 0.00 0.00 3.07
372 1643 4.127171 GGTATTCGTTGTACTGCCATGAT 58.873 43.478 0.00 0.00 0.00 2.45
373 1644 4.574828 GGTATTCGTTGTACTGCCATGATT 59.425 41.667 0.00 0.00 0.00 2.57
374 1645 4.621068 ATTCGTTGTACTGCCATGATTG 57.379 40.909 0.00 0.00 0.00 2.67
375 1646 3.326836 TCGTTGTACTGCCATGATTGA 57.673 42.857 0.00 0.00 0.00 2.57
376 1647 3.669536 TCGTTGTACTGCCATGATTGAA 58.330 40.909 0.00 0.00 0.00 2.69
377 1648 3.684305 TCGTTGTACTGCCATGATTGAAG 59.316 43.478 0.00 0.00 0.00 3.02
378 1649 3.684305 CGTTGTACTGCCATGATTGAAGA 59.316 43.478 0.00 0.00 0.00 2.87
379 1650 4.333649 CGTTGTACTGCCATGATTGAAGAT 59.666 41.667 0.00 0.00 0.00 2.40
380 1651 5.575957 GTTGTACTGCCATGATTGAAGATG 58.424 41.667 0.00 0.00 0.00 2.90
381 1652 5.101648 TGTACTGCCATGATTGAAGATGA 57.898 39.130 0.00 0.00 0.00 2.92
382 1653 5.499313 TGTACTGCCATGATTGAAGATGAA 58.501 37.500 0.00 0.00 0.00 2.57
383 1654 6.124340 TGTACTGCCATGATTGAAGATGAAT 58.876 36.000 0.00 0.00 0.00 2.57
384 1655 7.281841 TGTACTGCCATGATTGAAGATGAATA 58.718 34.615 0.00 0.00 0.00 1.75
385 1656 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
386 1657 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
387 1658 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
388 1659 7.724506 ACTGCCATGATTGAAGATGAATAGATT 59.275 33.333 0.00 0.00 0.00 2.40
389 1660 7.882179 TGCCATGATTGAAGATGAATAGATTG 58.118 34.615 0.00 0.00 0.00 2.67
390 1661 7.039993 TGCCATGATTGAAGATGAATAGATTGG 60.040 37.037 0.00 0.00 0.00 3.16
391 1662 7.176165 GCCATGATTGAAGATGAATAGATTGGA 59.824 37.037 0.00 0.00 0.00 3.53
392 1663 9.074576 CCATGATTGAAGATGAATAGATTGGAA 57.925 33.333 0.00 0.00 0.00 3.53
394 1665 9.863650 ATGATTGAAGATGAATAGATTGGAAGT 57.136 29.630 0.00 0.00 0.00 3.01
395 1666 9.690913 TGATTGAAGATGAATAGATTGGAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
411 1682 5.389642 GGAAGTTTTTCCGCAAAGAAAAG 57.610 39.130 6.45 0.00 44.27 2.27
669 1953 2.022240 GCCCGTGGTTTTGCTTTCCA 62.022 55.000 0.00 0.00 0.00 3.53
670 1954 0.461961 CCCGTGGTTTTGCTTTCCAA 59.538 50.000 0.00 0.00 32.82 3.53
671 1955 1.134670 CCCGTGGTTTTGCTTTCCAAA 60.135 47.619 0.00 0.00 41.48 3.28
681 1965 5.921004 TTTGCTTTCCAAAATACATGCAC 57.079 34.783 0.00 0.00 40.32 4.57
682 1966 4.597404 TGCTTTCCAAAATACATGCACA 57.403 36.364 0.00 0.00 0.00 4.57
683 1967 4.953667 TGCTTTCCAAAATACATGCACAA 58.046 34.783 0.00 0.00 0.00 3.33
684 1968 5.363101 TGCTTTCCAAAATACATGCACAAA 58.637 33.333 0.00 0.00 0.00 2.83
685 1969 5.819379 TGCTTTCCAAAATACATGCACAAAA 59.181 32.000 0.00 0.00 0.00 2.44
688 1972 7.307870 GCTTTCCAAAATACATGCACAAAATCA 60.308 33.333 0.00 0.00 0.00 2.57
690 1974 9.716531 TTTCCAAAATACATGCACAAAATCATA 57.283 25.926 0.00 0.00 0.00 2.15
739 2199 8.309163 ACACCAAAATACATGCACAAAATTAG 57.691 30.769 0.00 0.00 0.00 1.73
743 2203 9.638239 CCAAAATACATGCACAAAATTAGTACT 57.362 29.630 0.00 0.00 0.00 2.73
954 2854 7.229907 GTCCCTTGTTCCTTAATCAGTGTTTTA 59.770 37.037 0.00 0.00 0.00 1.52
958 2858 9.665264 CTTGTTCCTTAATCAGTGTTTTACTTC 57.335 33.333 0.00 0.00 37.60 3.01
974 2874 3.354089 ACTTCATGTCGTTTGCTTTGG 57.646 42.857 0.00 0.00 0.00 3.28
1212 3185 0.467384 AGGATCGGAGCCTTGTGATG 59.533 55.000 9.45 0.00 29.44 3.07
1240 3213 6.012658 TGTTTCTCTGCGAATAATGCTTTT 57.987 33.333 0.00 0.00 0.00 2.27
1275 3249 2.679059 CGACTGTGAAGGATGCCAAGAT 60.679 50.000 0.00 0.00 0.00 2.40
1514 3490 7.069344 TGAATCTTGGATATACAGTGAGAGGA 58.931 38.462 0.00 0.00 0.00 3.71
1515 3491 7.232330 TGAATCTTGGATATACAGTGAGAGGAG 59.768 40.741 0.00 0.00 0.00 3.69
1517 3493 6.303054 TCTTGGATATACAGTGAGAGGAGAG 58.697 44.000 0.00 0.00 0.00 3.20
1534 3510 3.200825 GGAGAGGACATCCATTCCTTTGA 59.799 47.826 11.54 0.00 44.03 2.69
1691 3668 3.819564 TCTAACCATTCATCTGTCCGG 57.180 47.619 0.00 0.00 0.00 5.14
1866 3853 2.442830 GGGCAGGGGAATGGAAGC 60.443 66.667 0.00 0.00 0.00 3.86
2337 4336 4.530710 AGAACTTCAATACGTAGTGCCA 57.469 40.909 17.77 6.38 45.73 4.92
2403 4414 6.835819 TCTAGCTTAGTGTGAGTATGTGTT 57.164 37.500 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.100671 GGATACCACTGTCCTTCTGACT 58.899 50.000 0.00 0.00 44.75 3.41
44 45 0.687354 TCTGGGACTTGAACTCTGGC 59.313 55.000 0.00 0.00 0.00 4.85
65 66 6.209192 TGAGAAAATACAAGCACCAATGTCAT 59.791 34.615 0.00 0.00 0.00 3.06
79 80 9.895138 TCATCTTGAGATTGATGAGAAAATACA 57.105 29.630 0.00 0.00 42.58 2.29
132 133 3.964688 ACACATCATCGTACCCCTATGAA 59.035 43.478 0.00 0.00 33.60 2.57
144 145 0.095245 GGAACGCACACACATCATCG 59.905 55.000 0.00 0.00 0.00 3.84
149 150 0.036388 CCCTAGGAACGCACACACAT 60.036 55.000 11.48 0.00 0.00 3.21
150 151 1.116536 TCCCTAGGAACGCACACACA 61.117 55.000 11.48 0.00 0.00 3.72
183 1454 3.827008 ATCCAAGTCGCTCACATACAT 57.173 42.857 0.00 0.00 0.00 2.29
200 1471 0.819582 TCGGGAAGTCGGTACAATCC 59.180 55.000 0.00 0.00 0.00 3.01
209 1480 1.130749 CAGTAGACAGTCGGGAAGTCG 59.869 57.143 0.00 0.00 37.36 4.18
211 1482 0.889306 GCAGTAGACAGTCGGGAAGT 59.111 55.000 0.00 0.00 0.00 3.01
212 1483 0.888619 TGCAGTAGACAGTCGGGAAG 59.111 55.000 0.00 0.00 0.00 3.46
215 1486 0.317160 TGTTGCAGTAGACAGTCGGG 59.683 55.000 0.00 0.00 0.00 5.14
216 1487 2.061773 CTTGTTGCAGTAGACAGTCGG 58.938 52.381 0.00 0.00 0.00 4.79
217 1488 2.743938 ACTTGTTGCAGTAGACAGTCG 58.256 47.619 0.00 0.00 0.00 4.18
218 1489 3.871594 ACAACTTGTTGCAGTAGACAGTC 59.128 43.478 12.76 0.00 0.00 3.51
219 1490 3.623060 CACAACTTGTTGCAGTAGACAGT 59.377 43.478 12.76 0.00 0.00 3.55
220 1491 3.546815 GCACAACTTGTTGCAGTAGACAG 60.547 47.826 12.76 0.00 0.00 3.51
221 1492 2.354510 GCACAACTTGTTGCAGTAGACA 59.645 45.455 12.76 0.00 0.00 3.41
222 1493 2.287009 GGCACAACTTGTTGCAGTAGAC 60.287 50.000 12.76 0.00 0.00 2.59
223 1494 1.946768 GGCACAACTTGTTGCAGTAGA 59.053 47.619 12.76 0.00 0.00 2.59
224 1495 1.001378 GGGCACAACTTGTTGCAGTAG 60.001 52.381 12.76 1.12 0.00 2.57
225 1496 1.028905 GGGCACAACTTGTTGCAGTA 58.971 50.000 12.76 0.00 0.00 2.74
226 1497 1.815866 GGGCACAACTTGTTGCAGT 59.184 52.632 12.76 0.00 0.00 4.40
227 1498 1.299316 CGGGCACAACTTGTTGCAG 60.299 57.895 12.76 7.58 0.00 4.41
228 1499 2.780094 CCGGGCACAACTTGTTGCA 61.780 57.895 12.76 0.00 0.00 4.08
229 1500 2.027460 CCGGGCACAACTTGTTGC 59.973 61.111 12.76 4.23 0.00 4.17
230 1501 2.027460 GCCGGGCACAACTTGTTG 59.973 61.111 15.62 11.44 0.00 3.33
231 1502 2.123897 AGCCGGGCACAACTTGTT 60.124 55.556 23.09 0.00 0.00 2.83
232 1503 2.594592 GAGCCGGGCACAACTTGT 60.595 61.111 23.09 0.00 0.00 3.16
233 1504 3.365265 GGAGCCGGGCACAACTTG 61.365 66.667 23.09 0.00 0.00 3.16
250 1521 3.550431 ATCACCCCTCCATCGCCG 61.550 66.667 0.00 0.00 0.00 6.46
251 1522 2.111878 CATCACCCCTCCATCGCC 59.888 66.667 0.00 0.00 0.00 5.54
252 1523 1.227674 GTCATCACCCCTCCATCGC 60.228 63.158 0.00 0.00 0.00 4.58
253 1524 1.068083 CGTCATCACCCCTCCATCG 59.932 63.158 0.00 0.00 0.00 3.84
254 1525 1.447643 CCGTCATCACCCCTCCATC 59.552 63.158 0.00 0.00 0.00 3.51
255 1526 2.746375 GCCGTCATCACCCCTCCAT 61.746 63.158 0.00 0.00 0.00 3.41
256 1527 3.399181 GCCGTCATCACCCCTCCA 61.399 66.667 0.00 0.00 0.00 3.86
257 1528 4.530857 CGCCGTCATCACCCCTCC 62.531 72.222 0.00 0.00 0.00 4.30
258 1529 4.530857 CCGCCGTCATCACCCCTC 62.531 72.222 0.00 0.00 0.00 4.30
281 1552 3.181967 CACCGAAGCGAGCCGAAG 61.182 66.667 0.00 0.00 0.00 3.79
284 1555 3.854618 TATAAGCACCGAAGCGAGCCG 62.855 57.143 0.00 0.00 40.15 5.52
285 1556 0.249322 TATAAGCACCGAAGCGAGCC 60.249 55.000 0.00 0.00 40.15 4.70
286 1557 1.132588 CTATAAGCACCGAAGCGAGC 58.867 55.000 0.00 0.00 40.15 5.03
287 1558 2.386249 GACTATAAGCACCGAAGCGAG 58.614 52.381 0.00 0.00 40.15 5.03
288 1559 1.268386 CGACTATAAGCACCGAAGCGA 60.268 52.381 0.00 0.00 40.15 4.93
289 1560 1.121240 CGACTATAAGCACCGAAGCG 58.879 55.000 0.00 0.00 40.15 4.68
290 1561 2.117910 GACGACTATAAGCACCGAAGC 58.882 52.381 0.00 0.00 0.00 3.86
291 1562 2.373269 CGACGACTATAAGCACCGAAG 58.627 52.381 0.00 0.00 0.00 3.79
292 1563 1.532505 GCGACGACTATAAGCACCGAA 60.533 52.381 0.00 0.00 0.00 4.30
293 1564 0.028505 GCGACGACTATAAGCACCGA 59.971 55.000 0.00 0.00 0.00 4.69
294 1565 0.029035 AGCGACGACTATAAGCACCG 59.971 55.000 0.00 0.00 0.00 4.94
295 1566 2.350580 CCTAGCGACGACTATAAGCACC 60.351 54.545 0.00 0.00 0.00 5.01
296 1567 2.290093 ACCTAGCGACGACTATAAGCAC 59.710 50.000 0.00 0.00 0.00 4.40
297 1568 2.289820 CACCTAGCGACGACTATAAGCA 59.710 50.000 0.00 0.00 0.00 3.91
298 1569 2.350580 CCACCTAGCGACGACTATAAGC 60.351 54.545 0.00 0.00 0.00 3.09
299 1570 2.877168 ACCACCTAGCGACGACTATAAG 59.123 50.000 0.00 0.00 0.00 1.73
300 1571 2.874701 GACCACCTAGCGACGACTATAA 59.125 50.000 0.00 0.00 0.00 0.98
301 1572 2.103771 AGACCACCTAGCGACGACTATA 59.896 50.000 0.00 0.00 0.00 1.31
302 1573 1.134159 AGACCACCTAGCGACGACTAT 60.134 52.381 0.00 0.00 0.00 2.12
303 1574 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
304 1575 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
305 1576 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
306 1577 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
307 1578 1.086067 TCGTAGACCACCTAGCGACG 61.086 60.000 0.00 0.00 31.20 5.12
308 1579 1.089920 TTCGTAGACCACCTAGCGAC 58.910 55.000 0.00 0.00 34.32 5.19
309 1580 2.048444 ATTCGTAGACCACCTAGCGA 57.952 50.000 0.00 0.00 34.32 4.93
310 1581 3.366070 CCATATTCGTAGACCACCTAGCG 60.366 52.174 0.00 0.00 34.32 4.26
311 1582 3.825014 TCCATATTCGTAGACCACCTAGC 59.175 47.826 0.00 0.00 34.32 3.42
312 1583 5.477291 ACATCCATATTCGTAGACCACCTAG 59.523 44.000 0.00 0.00 34.32 3.02
313 1584 5.391256 ACATCCATATTCGTAGACCACCTA 58.609 41.667 0.00 0.00 34.32 3.08
314 1585 4.223953 ACATCCATATTCGTAGACCACCT 58.776 43.478 0.00 0.00 34.32 4.00
315 1586 4.602340 ACATCCATATTCGTAGACCACC 57.398 45.455 0.00 0.00 34.32 4.61
316 1587 7.603651 AGATTACATCCATATTCGTAGACCAC 58.396 38.462 0.00 0.00 34.32 4.16
317 1588 7.776618 AGATTACATCCATATTCGTAGACCA 57.223 36.000 0.00 0.00 34.32 4.02
338 1609 9.886132 AGTACAACGAATACCAGAAATAAAGAT 57.114 29.630 0.00 0.00 0.00 2.40
339 1610 9.146984 CAGTACAACGAATACCAGAAATAAAGA 57.853 33.333 0.00 0.00 0.00 2.52
340 1611 7.903431 GCAGTACAACGAATACCAGAAATAAAG 59.097 37.037 0.00 0.00 0.00 1.85
341 1612 7.148373 GGCAGTACAACGAATACCAGAAATAAA 60.148 37.037 0.00 0.00 0.00 1.40
342 1613 6.314400 GGCAGTACAACGAATACCAGAAATAA 59.686 38.462 0.00 0.00 0.00 1.40
343 1614 5.813672 GGCAGTACAACGAATACCAGAAATA 59.186 40.000 0.00 0.00 0.00 1.40
344 1615 4.634443 GGCAGTACAACGAATACCAGAAAT 59.366 41.667 0.00 0.00 0.00 2.17
345 1616 3.998341 GGCAGTACAACGAATACCAGAAA 59.002 43.478 0.00 0.00 0.00 2.52
346 1617 3.007074 TGGCAGTACAACGAATACCAGAA 59.993 43.478 0.00 0.00 0.00 3.02
347 1618 2.563620 TGGCAGTACAACGAATACCAGA 59.436 45.455 0.00 0.00 0.00 3.86
348 1619 2.967362 TGGCAGTACAACGAATACCAG 58.033 47.619 0.00 0.00 0.00 4.00
349 1620 3.055747 TCATGGCAGTACAACGAATACCA 60.056 43.478 0.00 0.00 0.00 3.25
350 1621 3.527533 TCATGGCAGTACAACGAATACC 58.472 45.455 0.00 0.00 0.00 2.73
351 1622 5.293324 TCAATCATGGCAGTACAACGAATAC 59.707 40.000 0.00 0.00 0.00 1.89
352 1623 5.423886 TCAATCATGGCAGTACAACGAATA 58.576 37.500 0.00 0.00 0.00 1.75
353 1624 4.260985 TCAATCATGGCAGTACAACGAAT 58.739 39.130 0.00 0.00 0.00 3.34
354 1625 3.669536 TCAATCATGGCAGTACAACGAA 58.330 40.909 0.00 0.00 0.00 3.85
355 1626 3.326836 TCAATCATGGCAGTACAACGA 57.673 42.857 0.00 0.00 0.00 3.85
356 1627 3.684305 TCTTCAATCATGGCAGTACAACG 59.316 43.478 0.00 0.00 0.00 4.10
357 1628 5.355071 TCATCTTCAATCATGGCAGTACAAC 59.645 40.000 0.00 0.00 0.00 3.32
358 1629 5.499313 TCATCTTCAATCATGGCAGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
359 1630 5.101648 TCATCTTCAATCATGGCAGTACA 57.898 39.130 0.00 0.00 0.00 2.90
360 1631 6.630444 ATTCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
361 1632 7.738847 TCTATTCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
362 1633 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
363 1634 7.689446 ATCTATTCATCTTCAATCATGGCAG 57.311 36.000 0.00 0.00 0.00 4.85
364 1635 7.039993 CCAATCTATTCATCTTCAATCATGGCA 60.040 37.037 0.00 0.00 0.00 4.92
365 1636 7.176165 TCCAATCTATTCATCTTCAATCATGGC 59.824 37.037 0.00 0.00 0.00 4.40
366 1637 8.631480 TCCAATCTATTCATCTTCAATCATGG 57.369 34.615 0.00 0.00 0.00 3.66
368 1639 9.863650 ACTTCCAATCTATTCATCTTCAATCAT 57.136 29.630 0.00 0.00 0.00 2.45
369 1640 9.690913 AACTTCCAATCTATTCATCTTCAATCA 57.309 29.630 0.00 0.00 0.00 2.57
374 1645 9.794685 GGAAAAACTTCCAATCTATTCATCTTC 57.205 33.333 0.00 0.00 40.79 2.87
375 1646 8.462016 CGGAAAAACTTCCAATCTATTCATCTT 58.538 33.333 4.85 0.00 41.16 2.40
376 1647 7.415653 GCGGAAAAACTTCCAATCTATTCATCT 60.416 37.037 4.85 0.00 41.16 2.90
377 1648 6.693113 GCGGAAAAACTTCCAATCTATTCATC 59.307 38.462 4.85 0.00 41.16 2.92
378 1649 6.152661 TGCGGAAAAACTTCCAATCTATTCAT 59.847 34.615 4.85 0.00 41.16 2.57
379 1650 5.475220 TGCGGAAAAACTTCCAATCTATTCA 59.525 36.000 4.85 0.00 41.16 2.57
380 1651 5.949735 TGCGGAAAAACTTCCAATCTATTC 58.050 37.500 4.85 0.00 41.16 1.75
381 1652 5.975693 TGCGGAAAAACTTCCAATCTATT 57.024 34.783 4.85 0.00 41.16 1.73
382 1653 5.975693 TTGCGGAAAAACTTCCAATCTAT 57.024 34.783 4.85 0.00 41.16 1.98
383 1654 5.533154 TCTTTGCGGAAAAACTTCCAATCTA 59.467 36.000 3.02 0.00 41.16 1.98
384 1655 4.340950 TCTTTGCGGAAAAACTTCCAATCT 59.659 37.500 3.02 0.00 41.16 2.40
385 1656 4.616953 TCTTTGCGGAAAAACTTCCAATC 58.383 39.130 3.02 0.00 41.16 2.67
386 1657 4.664150 TCTTTGCGGAAAAACTTCCAAT 57.336 36.364 3.02 0.00 41.16 3.16
387 1658 4.457834 TTCTTTGCGGAAAAACTTCCAA 57.542 36.364 3.02 0.00 41.16 3.53
388 1659 4.457834 TTTCTTTGCGGAAAAACTTCCA 57.542 36.364 3.02 0.00 41.16 3.53
389 1660 5.106442 TCTTTTCTTTGCGGAAAAACTTCC 58.894 37.500 3.02 0.00 42.28 3.46
390 1661 6.641176 TTCTTTTCTTTGCGGAAAAACTTC 57.359 33.333 3.02 0.00 42.28 3.01
391 1662 7.041712 TGTTTTCTTTTCTTTGCGGAAAAACTT 60.042 29.630 3.02 0.00 42.28 2.66
392 1663 6.425417 TGTTTTCTTTTCTTTGCGGAAAAACT 59.575 30.769 3.02 0.00 42.28 2.66
393 1664 6.594886 TGTTTTCTTTTCTTTGCGGAAAAAC 58.405 32.000 3.02 3.21 42.28 2.43
394 1665 6.787085 TGTTTTCTTTTCTTTGCGGAAAAA 57.213 29.167 3.02 0.00 42.28 1.94
395 1666 6.787085 TTGTTTTCTTTTCTTTGCGGAAAA 57.213 29.167 3.02 10.21 41.17 2.29
396 1667 6.787085 TTTGTTTTCTTTTCTTTGCGGAAA 57.213 29.167 1.05 1.05 33.98 3.13
397 1668 6.976636 ATTTGTTTTCTTTTCTTTGCGGAA 57.023 29.167 0.00 0.00 0.00 4.30
398 1669 7.923344 TCATATTTGTTTTCTTTTCTTTGCGGA 59.077 29.630 0.00 0.00 0.00 5.54
399 1670 8.071122 TCATATTTGTTTTCTTTTCTTTGCGG 57.929 30.769 0.00 0.00 0.00 5.69
400 1671 8.755018 ACTCATATTTGTTTTCTTTTCTTTGCG 58.245 29.630 0.00 0.00 0.00 4.85
407 1678 9.489084 GGCCTAAACTCATATTTGTTTTCTTTT 57.511 29.630 0.00 0.00 37.53 2.27
408 1679 8.870116 AGGCCTAAACTCATATTTGTTTTCTTT 58.130 29.630 1.29 0.00 37.53 2.52
409 1680 8.422577 AGGCCTAAACTCATATTTGTTTTCTT 57.577 30.769 1.29 0.00 37.53 2.52
410 1681 7.669722 TGAGGCCTAAACTCATATTTGTTTTCT 59.330 33.333 4.42 3.31 39.87 2.52
411 1682 7.755373 GTGAGGCCTAAACTCATATTTGTTTTC 59.245 37.037 4.42 0.00 45.72 2.29
601 1880 9.883142 TTGTTCTTTTCTTAACAAATGTTGGAT 57.117 25.926 8.99 0.00 41.34 3.41
670 1954 9.401873 CGATGATATGATTTTGTGCATGTATTT 57.598 29.630 0.00 0.00 0.00 1.40
671 1955 8.024865 CCGATGATATGATTTTGTGCATGTATT 58.975 33.333 0.00 0.00 0.00 1.89
672 1956 7.532571 CCGATGATATGATTTTGTGCATGTAT 58.467 34.615 0.00 0.00 0.00 2.29
673 1957 6.568271 GCCGATGATATGATTTTGTGCATGTA 60.568 38.462 0.00 0.00 0.00 2.29
674 1958 5.765176 CCGATGATATGATTTTGTGCATGT 58.235 37.500 0.00 0.00 0.00 3.21
675 1959 4.619760 GCCGATGATATGATTTTGTGCATG 59.380 41.667 0.00 0.00 0.00 4.06
676 1960 4.614306 CGCCGATGATATGATTTTGTGCAT 60.614 41.667 0.00 0.00 0.00 3.96
677 1961 3.303924 CGCCGATGATATGATTTTGTGCA 60.304 43.478 0.00 0.00 0.00 4.57
678 1962 3.228749 CGCCGATGATATGATTTTGTGC 58.771 45.455 0.00 0.00 0.00 4.57
679 1963 3.498018 TCCGCCGATGATATGATTTTGTG 59.502 43.478 0.00 0.00 0.00 3.33
680 1964 3.498397 GTCCGCCGATGATATGATTTTGT 59.502 43.478 0.00 0.00 0.00 2.83
681 1965 3.498018 TGTCCGCCGATGATATGATTTTG 59.502 43.478 0.00 0.00 0.00 2.44
682 1966 3.738982 TGTCCGCCGATGATATGATTTT 58.261 40.909 0.00 0.00 0.00 1.82
683 1967 3.329386 CTGTCCGCCGATGATATGATTT 58.671 45.455 0.00 0.00 0.00 2.17
684 1968 2.932622 GCTGTCCGCCGATGATATGATT 60.933 50.000 0.00 0.00 0.00 2.57
685 1969 1.404717 GCTGTCCGCCGATGATATGAT 60.405 52.381 0.00 0.00 0.00 2.45
688 1972 0.319900 GTGCTGTCCGCCGATGATAT 60.320 55.000 0.00 0.00 38.05 1.63
690 1974 2.202932 GTGCTGTCCGCCGATGAT 60.203 61.111 0.00 0.00 38.05 2.45
802 2262 7.039270 TCATGCGCTACTTAATTTCTACTCAA 58.961 34.615 9.73 0.00 0.00 3.02
954 2854 2.543653 GCCAAAGCAAACGACATGAAGT 60.544 45.455 0.00 0.00 39.53 3.01
974 2874 1.376037 CGAACTCCTTCCCACCTGC 60.376 63.158 0.00 0.00 0.00 4.85
1212 3185 6.363357 AGCATTATTCGCAGAGAAACAAAAAC 59.637 34.615 0.00 0.00 42.91 2.43
1240 3213 1.960763 AGTCGTTGCTGCATCGCAA 60.961 52.632 24.00 9.14 46.73 4.85
1275 3249 3.448267 CTGAGAATCTTCAGCGCCA 57.552 52.632 2.29 0.00 38.28 5.69
1294 3268 2.032071 AACTTCACCTTCCCCGCG 59.968 61.111 0.00 0.00 0.00 6.46
1305 3279 1.967779 TGATGACCAGGTCGAACTTCA 59.032 47.619 15.24 3.20 34.95 3.02
1514 3490 3.371380 GCTCAAAGGAATGGATGTCCTCT 60.371 47.826 0.09 0.00 45.12 3.69
1515 3491 2.948315 GCTCAAAGGAATGGATGTCCTC 59.052 50.000 0.09 0.00 45.12 3.71
1517 3493 2.686915 CTGCTCAAAGGAATGGATGTCC 59.313 50.000 0.00 0.00 35.17 4.02
1534 3510 1.407936 ATAGGATCTCACGTGCTGCT 58.592 50.000 11.67 10.88 0.00 4.24
1866 3853 5.349817 GGATCTCATAAATCACATGCTACCG 59.650 44.000 0.00 0.00 0.00 4.02
2337 4336 6.897966 TGGATGGTATTGAACTCTAGACTTCT 59.102 38.462 11.81 0.00 0.00 2.85
2403 4414 4.344102 GTGGGTCTACATTGCATAGGAGTA 59.656 45.833 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.