Multiple sequence alignment - TraesCS7B01G420700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G420700 chr7B 100.000 6092 0 0 1 6092 690011885 690017976 0.000000e+00 11250.0
1 TraesCS7B01G420700 chr7B 87.763 1708 146 35 3501 5176 689925508 689927184 0.000000e+00 1938.0
2 TraesCS7B01G420700 chr7B 84.587 1609 166 53 3593 5177 689967610 689969160 0.000000e+00 1522.0
3 TraesCS7B01G420700 chr7B 83.898 1329 159 37 3820 5139 689686371 689687653 0.000000e+00 1218.0
4 TraesCS7B01G420700 chr7B 96.060 736 26 3 5357 6092 742636766 742637498 0.000000e+00 1195.0
5 TraesCS7B01G420700 chr7B 96.049 734 28 1 5359 6092 715770190 715769458 0.000000e+00 1194.0
6 TraesCS7B01G420700 chr7B 95.913 734 30 0 5359 6092 627961929 627961196 0.000000e+00 1190.0
7 TraesCS7B01G420700 chr7B 85.623 626 51 22 871 1475 689903339 689903946 6.710000e-174 621.0
8 TraesCS7B01G420700 chr7B 85.738 596 50 15 891 1475 689965375 689965946 1.130000e-166 597.0
9 TraesCS7B01G420700 chr7B 80.833 720 85 22 2495 3191 689924784 689925473 3.260000e-142 516.0
10 TraesCS7B01G420700 chr7B 84.221 526 45 20 989 1504 689203242 689203739 1.540000e-130 477.0
11 TraesCS7B01G420700 chr7B 84.663 489 42 11 3490 3966 689905455 689905922 2.000000e-124 457.0
12 TraesCS7B01G420700 chr7B 77.327 666 105 31 2556 3197 689204874 689205517 9.720000e-93 351.0
13 TraesCS7B01G420700 chr7B 95.522 201 8 1 1758 1958 689966072 689966271 2.740000e-83 320.0
14 TraesCS7B01G420700 chr7B 93.532 201 13 0 1758 1958 689204029 689204229 3.570000e-77 300.0
15 TraesCS7B01G420700 chr7B 93.137 204 14 0 1759 1962 689922932 689923135 3.570000e-77 300.0
16 TraesCS7B01G420700 chr7B 79.699 399 54 18 2807 3191 689199569 689199954 4.680000e-66 263.0
17 TraesCS7B01G420700 chr7B 95.062 162 7 1 5198 5358 690045441 690045602 2.820000e-63 254.0
18 TraesCS7B01G420700 chr7B 84.898 245 25 8 2953 3191 689685752 689685990 2.840000e-58 237.0
19 TraesCS7B01G420700 chr7B 93.289 149 10 0 2163 2311 689904478 689904626 2.860000e-53 220.0
20 TraesCS7B01G420700 chr7B 92.157 153 12 0 2159 2311 689966408 689966560 3.700000e-52 217.0
21 TraesCS7B01G420700 chr7B 83.696 92 15 0 3399 3490 436086617 436086526 3.020000e-13 87.9
22 TraesCS7B01G420700 chr7D 91.108 2654 151 47 738 3357 605908109 605910711 0.000000e+00 3515.0
23 TraesCS7B01G420700 chr7D 94.447 1963 62 26 3398 5358 605910779 605912696 0.000000e+00 2977.0
24 TraesCS7B01G420700 chr7D 89.907 1615 130 23 3586 5176 605866729 605868334 0.000000e+00 2049.0
25 TraesCS7B01G420700 chr7D 85.662 1367 144 38 3796 5139 605746472 605747809 0.000000e+00 1391.0
26 TraesCS7B01G420700 chr7D 85.185 1134 131 26 4059 5172 605832684 605833800 0.000000e+00 1129.0
27 TraesCS7B01G420700 chr7D 85.229 589 56 18 899 1475 605830075 605830644 1.470000e-160 577.0
28 TraesCS7B01G420700 chr7D 84.452 611 65 15 2602 3197 605863294 605863889 5.300000e-160 575.0
29 TraesCS7B01G420700 chr7D 84.749 518 50 10 3490 3996 605832160 605832659 5.490000e-135 492.0
30 TraesCS7B01G420700 chr7D 91.209 273 20 4 1759 2029 605862022 605862292 9.650000e-98 368.0
31 TraesCS7B01G420700 chr7D 81.237 485 64 18 2035 2503 605862657 605863130 3.470000e-97 366.0
32 TraesCS7B01G420700 chr7D 85.757 337 38 6 1224 1558 605740166 605740494 1.260000e-91 348.0
33 TraesCS7B01G420700 chr7D 94.030 201 12 0 1758 1958 605752386 605752586 7.670000e-79 305.0
34 TraesCS7B01G420700 chr7D 83.746 283 39 4 2911 3191 605745839 605746116 1.680000e-65 261.0
35 TraesCS7B01G420700 chr7D 92.810 153 11 0 2159 2311 605831172 605831324 7.950000e-54 222.0
36 TraesCS7B01G420700 chr7D 74.087 575 73 43 9 538 605907525 605908068 3.780000e-37 167.0
37 TraesCS7B01G420700 chr7D 82.474 194 25 7 990 1177 605739962 605740152 1.760000e-35 161.0
38 TraesCS7B01G420700 chr7D 90.426 94 7 2 3502 3594 605863920 605864012 8.290000e-24 122.0
39 TraesCS7B01G420700 chr7D 94.231 52 2 1 3335 3385 572759949 572760000 1.820000e-10 78.7
40 TraesCS7B01G420700 chr7D 100.000 29 0 0 3305 3333 603768259 603768231 3.000000e-03 54.7
41 TraesCS7B01G420700 chr7A 94.756 1964 75 14 3399 5358 697140162 697142101 0.000000e+00 3031.0
42 TraesCS7B01G420700 chr7A 94.444 1962 80 14 3399 5358 697255799 697257733 0.000000e+00 2992.0
43 TraesCS7B01G420700 chr7A 89.841 1703 135 26 3502 5176 697117022 697118714 0.000000e+00 2152.0
44 TraesCS7B01G420700 chr7A 90.632 1313 80 21 2088 3394 697138853 697140128 0.000000e+00 1703.0
45 TraesCS7B01G420700 chr7A 89.208 1288 91 22 738 2015 697137612 697138861 0.000000e+00 1565.0
46 TraesCS7B01G420700 chr7A 83.931 1562 197 36 3796 5336 697012805 697014333 0.000000e+00 1445.0
47 TraesCS7B01G420700 chr7A 88.024 501 39 9 984 1475 697057651 697058139 1.900000e-159 573.0
48 TraesCS7B01G420700 chr7A 84.106 604 57 15 2602 3191 697116407 697116985 1.150000e-151 547.0
49 TraesCS7B01G420700 chr7A 89.150 341 27 6 1212 1545 697109128 697109465 3.400000e-112 416.0
50 TraesCS7B01G420700 chr7A 87.353 340 38 3 1224 1560 697005021 697005358 9.580000e-103 385.0
51 TraesCS7B01G420700 chr7A 82.468 462 52 19 2039 2488 697113838 697114282 1.600000e-100 377.0
52 TraesCS7B01G420700 chr7A 88.328 317 26 8 3081 3394 697255457 697255765 2.680000e-98 370.0
53 TraesCS7B01G420700 chr7A 92.823 209 15 0 1759 1967 697109643 697109851 2.760000e-78 303.0
54 TraesCS7B01G420700 chr7A 91.667 204 16 1 1758 1961 697058293 697058495 1.290000e-71 281.0
55 TraesCS7B01G420700 chr7A 85.892 241 28 3 2951 3191 697012252 697012486 1.010000e-62 252.0
56 TraesCS7B01G420700 chr5B 96.752 739 23 1 5355 6092 702936459 702935721 0.000000e+00 1230.0
57 TraesCS7B01G420700 chr5B 95.940 739 29 1 5354 6092 686928798 686928061 0.000000e+00 1197.0
58 TraesCS7B01G420700 chr5B 96.054 735 27 2 5359 6092 707075470 707076203 0.000000e+00 1195.0
59 TraesCS7B01G420700 chr5B 95.805 739 30 1 5354 6092 686874119 686873382 0.000000e+00 1192.0
60 TraesCS7B01G420700 chr2B 96.336 737 25 2 5356 6092 7469650 7468916 0.000000e+00 1210.0
61 TraesCS7B01G420700 chr4A 95.811 740 29 2 5355 6092 699650527 699649788 0.000000e+00 1194.0
62 TraesCS7B01G420700 chr4A 91.489 47 4 0 3348 3394 21452442 21452396 1.420000e-06 65.8
63 TraesCS7B01G420700 chrUn 95.761 401 16 1 4067 4467 478791850 478792249 0.000000e+00 645.0
64 TraesCS7B01G420700 chr1B 90.351 114 10 1 2872 2985 7249433 7249321 1.370000e-31 148.0
65 TraesCS7B01G420700 chr5D 91.429 105 9 0 600 704 377988008 377988112 1.770000e-30 145.0
66 TraesCS7B01G420700 chr5D 87.931 116 10 3 600 712 420188470 420188584 3.830000e-27 134.0
67 TraesCS7B01G420700 chr5D 83.562 146 19 2 600 740 461070092 461069947 1.380000e-26 132.0
68 TraesCS7B01G420700 chr4B 91.429 105 9 0 600 704 551728956 551728852 1.770000e-30 145.0
69 TraesCS7B01G420700 chr4B 87.395 119 12 2 600 715 517751065 517751183 3.830000e-27 134.0
70 TraesCS7B01G420700 chr3A 87.603 121 11 3 601 717 44609400 44609280 2.960000e-28 137.0
71 TraesCS7B01G420700 chr6D 87.395 119 12 1 600 715 90134896 90135014 3.830000e-27 134.0
72 TraesCS7B01G420700 chr6D 87.288 118 13 1 600 715 431160822 431160705 3.830000e-27 134.0
73 TraesCS7B01G420700 chr6D 100.000 33 0 0 2935 2967 282609385 282609417 1.830000e-05 62.1
74 TraesCS7B01G420700 chr3B 82.979 141 23 1 600 739 431580194 431580334 6.410000e-25 126.0
75 TraesCS7B01G420700 chr5A 84.783 92 13 1 3399 3490 11242715 11242625 2.340000e-14 91.6
76 TraesCS7B01G420700 chr2A 100.000 31 0 0 3305 3335 19931974 19931944 2.370000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G420700 chr7B 690011885 690017976 6091 False 11250.000000 11250 100.000000 1 6092 1 chr7B.!!$F1 6091
1 TraesCS7B01G420700 chr7B 742636766 742637498 732 False 1195.000000 1195 96.060000 5357 6092 1 chr7B.!!$F3 735
2 TraesCS7B01G420700 chr7B 715769458 715770190 732 True 1194.000000 1194 96.049000 5359 6092 1 chr7B.!!$R3 733
3 TraesCS7B01G420700 chr7B 627961196 627961929 733 True 1190.000000 1190 95.913000 5359 6092 1 chr7B.!!$R2 733
4 TraesCS7B01G420700 chr7B 689922932 689927184 4252 False 918.000000 1938 87.244333 1759 5176 3 chr7B.!!$F7 3417
5 TraesCS7B01G420700 chr7B 689685752 689687653 1901 False 727.500000 1218 84.398000 2953 5139 2 chr7B.!!$F5 2186
6 TraesCS7B01G420700 chr7B 689965375 689969160 3785 False 664.000000 1522 89.501000 891 5177 4 chr7B.!!$F8 4286
7 TraesCS7B01G420700 chr7B 689903339 689905922 2583 False 432.666667 621 87.858333 871 3966 3 chr7B.!!$F6 3095
8 TraesCS7B01G420700 chr7B 689199569 689205517 5948 False 347.750000 477 83.694750 989 3197 4 chr7B.!!$F4 2208
9 TraesCS7B01G420700 chr7D 605907525 605912696 5171 False 2219.666667 3515 86.547333 9 5358 3 chr7D.!!$F7 5349
10 TraesCS7B01G420700 chr7D 605745839 605747809 1970 False 826.000000 1391 84.704000 2911 5139 2 chr7D.!!$F4 2228
11 TraesCS7B01G420700 chr7D 605862022 605868334 6312 False 696.000000 2049 87.446200 1759 5176 5 chr7D.!!$F6 3417
12 TraesCS7B01G420700 chr7D 605830075 605833800 3725 False 605.000000 1129 86.993250 899 5172 4 chr7D.!!$F5 4273
13 TraesCS7B01G420700 chr7D 605739962 605740494 532 False 254.500000 348 84.115500 990 1558 2 chr7D.!!$F3 568
14 TraesCS7B01G420700 chr7A 697137612 697142101 4489 False 2099.666667 3031 91.532000 738 5358 3 chr7A.!!$F5 4620
15 TraesCS7B01G420700 chr7A 697255457 697257733 2276 False 1681.000000 2992 91.386000 3081 5358 2 chr7A.!!$F6 2277
16 TraesCS7B01G420700 chr7A 697012252 697014333 2081 False 848.500000 1445 84.911500 2951 5336 2 chr7A.!!$F2 2385
17 TraesCS7B01G420700 chr7A 697109128 697118714 9586 False 759.000000 2152 87.677600 1212 5176 5 chr7A.!!$F4 3964
18 TraesCS7B01G420700 chr7A 697057651 697058495 844 False 427.000000 573 89.845500 984 1961 2 chr7A.!!$F3 977
19 TraesCS7B01G420700 chr5B 702935721 702936459 738 True 1230.000000 1230 96.752000 5355 6092 1 chr5B.!!$R3 737
20 TraesCS7B01G420700 chr5B 686928061 686928798 737 True 1197.000000 1197 95.940000 5354 6092 1 chr5B.!!$R2 738
21 TraesCS7B01G420700 chr5B 707075470 707076203 733 False 1195.000000 1195 96.054000 5359 6092 1 chr5B.!!$F1 733
22 TraesCS7B01G420700 chr5B 686873382 686874119 737 True 1192.000000 1192 95.805000 5354 6092 1 chr5B.!!$R1 738
23 TraesCS7B01G420700 chr2B 7468916 7469650 734 True 1210.000000 1210 96.336000 5356 6092 1 chr2B.!!$R1 736
24 TraesCS7B01G420700 chr4A 699649788 699650527 739 True 1194.000000 1194 95.811000 5355 6092 1 chr4A.!!$R2 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 935 0.098552 CTAAATCAATGCGGCGCACA 59.901 50.0 38.84 24.03 43.04 4.57 F
882 936 0.179176 TAAATCAATGCGGCGCACAC 60.179 50.0 38.84 5.90 43.04 3.82 F
1572 1680 0.311477 TCGGTCGACGTGTTGATTCA 59.689 50.0 9.92 0.00 44.69 2.57 F
2907 9810 0.304705 CAATAACCGATGACGCAGCC 59.695 55.0 0.00 0.00 38.29 4.85 F
3449 10615 0.596082 GCCGGTCTCTCTCTATCAGC 59.404 60.0 1.90 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 1894 0.179113 CAGCGCCCACACAAGTTTTT 60.179 50.000 2.29 0.0 0.00 1.94 R
2415 6921 0.245266 TCAATCTGCCGTGCGTTCTA 59.755 50.000 0.00 0.0 0.00 2.10 R
3156 10093 0.315251 GCCCTGAAGGTTTTGCTGAC 59.685 55.000 0.00 0.0 38.26 3.51 R
3735 13641 0.615331 TCACCACTCAGGGCAATCTC 59.385 55.000 0.00 0.0 43.89 2.75 R
5233 15289 3.179443 TCTGGTGTTGAGTGACAAGTC 57.821 47.619 0.00 0.0 39.30 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.501610 GCCCGATCTGGACACTCC 59.498 66.667 7.45 0.00 42.00 3.85
30 31 2.338809 TGGACACTCCAAATCCAGACT 58.661 47.619 0.00 0.00 45.00 3.24
35 36 2.171448 CACTCCAAATCCAGACTAGGGG 59.829 54.545 0.00 0.00 0.00 4.79
72 74 2.979676 CTTCGCCAGCCAAGCACA 60.980 61.111 0.00 0.00 0.00 4.57
78 80 1.073025 CCAGCCAAGCACACACCTA 59.927 57.895 0.00 0.00 0.00 3.08
79 81 0.322816 CCAGCCAAGCACACACCTAT 60.323 55.000 0.00 0.00 0.00 2.57
81 83 0.962356 AGCCAAGCACACACCTATGC 60.962 55.000 0.00 0.00 42.39 3.14
83 85 0.608856 CCAAGCACACACCTATGCCA 60.609 55.000 0.00 0.00 43.12 4.92
87 89 1.372087 GCACACACCTATGCCAGCTC 61.372 60.000 0.00 0.00 35.73 4.09
88 90 0.745845 CACACACCTATGCCAGCTCC 60.746 60.000 0.00 0.00 0.00 4.70
91 93 2.042762 ACCTATGCCAGCTCCCCA 59.957 61.111 0.00 0.00 0.00 4.96
101 103 4.083862 GCTCCCCACGACCCACTC 62.084 72.222 0.00 0.00 0.00 3.51
103 105 3.907027 CTCCCCACGACCCACTCCT 62.907 68.421 0.00 0.00 0.00 3.69
108 110 1.908793 CACGACCCACTCCTCCACT 60.909 63.158 0.00 0.00 0.00 4.00
111 113 2.930562 ACCCACTCCTCCACTGCC 60.931 66.667 0.00 0.00 0.00 4.85
114 116 3.699894 CACTCCTCCACTGCCGCT 61.700 66.667 0.00 0.00 0.00 5.52
122 124 4.994471 CACTGCCGCTCCACTGCA 62.994 66.667 0.00 0.00 36.97 4.41
128 130 3.699894 CGCTCCACTGCAGAGGGT 61.700 66.667 27.23 0.00 38.96 4.34
179 193 1.144936 GGGGATCGCCACTCTCAAG 59.855 63.158 23.21 0.00 33.55 3.02
180 194 1.617947 GGGGATCGCCACTCTCAAGT 61.618 60.000 23.21 0.00 33.55 3.16
181 195 0.179097 GGGATCGCCACTCTCAAGTC 60.179 60.000 0.00 0.00 31.71 3.01
183 197 0.526524 GATCGCCACTCTCAAGTCGG 60.527 60.000 0.00 0.00 31.71 4.79
185 199 1.006102 CGCCACTCTCAAGTCGGTT 60.006 57.895 0.00 0.00 31.71 4.44
189 203 1.067495 CCACTCTCAAGTCGGTTCCTC 60.067 57.143 0.00 0.00 31.71 3.71
206 220 1.372087 CTCCAAGAAGGCACCATCGC 61.372 60.000 0.00 0.00 37.29 4.58
214 228 2.669569 GCACCATCGCCACAGTGT 60.670 61.111 0.00 0.00 32.75 3.55
217 231 2.048222 CCATCGCCACAGTGTCGT 60.048 61.111 3.56 0.00 0.00 4.34
218 232 1.667830 CCATCGCCACAGTGTCGTT 60.668 57.895 3.56 0.00 0.00 3.85
225 239 1.069765 CACAGTGTCGTTGCCTCCT 59.930 57.895 0.00 0.00 0.00 3.69
227 241 1.734477 CAGTGTCGTTGCCTCCTCG 60.734 63.158 0.00 0.00 0.00 4.63
228 242 2.201022 AGTGTCGTTGCCTCCTCGT 61.201 57.895 0.00 0.00 0.00 4.18
229 243 1.733399 GTGTCGTTGCCTCCTCGTC 60.733 63.158 0.00 0.00 0.00 4.20
230 244 1.901948 TGTCGTTGCCTCCTCGTCT 60.902 57.895 0.00 0.00 0.00 4.18
231 245 1.444553 GTCGTTGCCTCCTCGTCTG 60.445 63.158 0.00 0.00 0.00 3.51
241 255 2.503061 CTCGTCTGGAGGCCATGG 59.497 66.667 7.63 7.63 39.22 3.66
265 279 4.873129 CCACCGACCGCCTCATCG 62.873 72.222 0.00 0.00 38.08 3.84
266 280 3.822192 CACCGACCGCCTCATCGA 61.822 66.667 0.00 0.00 40.86 3.59
267 281 2.833582 ACCGACCGCCTCATCGAT 60.834 61.111 0.00 0.00 40.86 3.59
269 283 2.427575 CGACCGCCTCATCGATCG 60.428 66.667 9.36 9.36 39.24 3.69
270 284 3.031495 GACCGCCTCATCGATCGA 58.969 61.111 21.86 21.86 0.00 3.59
271 285 1.370657 GACCGCCTCATCGATCGAC 60.371 63.158 22.06 6.26 0.00 4.20
272 286 2.060004 GACCGCCTCATCGATCGACA 62.060 60.000 22.06 9.26 0.00 4.35
273 287 1.065764 CCGCCTCATCGATCGACAA 59.934 57.895 22.06 10.52 0.00 3.18
275 289 0.248661 CGCCTCATCGATCGACAAGT 60.249 55.000 22.06 0.55 0.00 3.16
276 290 1.799181 CGCCTCATCGATCGACAAGTT 60.799 52.381 22.06 0.09 0.00 2.66
278 292 2.480416 GCCTCATCGATCGACAAGTTCT 60.480 50.000 22.06 0.00 0.00 3.01
279 293 3.243101 GCCTCATCGATCGACAAGTTCTA 60.243 47.826 22.06 0.00 0.00 2.10
293 331 0.106318 GTTCTAGACCCCGCCCTCTA 60.106 60.000 0.00 0.00 0.00 2.43
294 332 0.185416 TTCTAGACCCCGCCCTCTAG 59.815 60.000 0.00 0.00 38.14 2.43
295 333 1.904378 CTAGACCCCGCCCTCTAGC 60.904 68.421 0.00 0.00 31.85 3.42
299 337 4.162690 CCCCGCCCTCTAGCACAC 62.163 72.222 0.00 0.00 0.00 3.82
300 338 3.390521 CCCGCCCTCTAGCACACA 61.391 66.667 0.00 0.00 0.00 3.72
319 357 4.408821 TCCATCCACCGCCACTGC 62.409 66.667 0.00 0.00 0.00 4.40
356 394 4.349503 AGCTGACGGCCATGGCAA 62.350 61.111 36.56 18.27 44.11 4.52
357 395 3.372730 GCTGACGGCCATGGCAAA 61.373 61.111 36.56 17.92 44.11 3.68
358 396 2.879907 CTGACGGCCATGGCAAAG 59.120 61.111 36.56 27.49 44.11 2.77
359 397 3.346631 CTGACGGCCATGGCAAAGC 62.347 63.158 36.56 22.25 44.11 3.51
360 398 3.064324 GACGGCCATGGCAAAGCT 61.064 61.111 36.56 17.18 44.11 3.74
361 399 3.346631 GACGGCCATGGCAAAGCTG 62.347 63.158 36.56 20.15 44.11 4.24
362 400 4.137872 CGGCCATGGCAAAGCTGG 62.138 66.667 36.56 13.08 44.11 4.85
394 432 4.343323 CACACCGCCCACATCCCA 62.343 66.667 0.00 0.00 0.00 4.37
395 433 4.344865 ACACCGCCCACATCCCAC 62.345 66.667 0.00 0.00 0.00 4.61
406 444 4.735132 ATCCCACACCGCACGACG 62.735 66.667 0.00 0.00 43.15 5.12
444 482 4.722700 GCGGGGGCAGTCACACAT 62.723 66.667 0.00 0.00 0.00 3.21
445 483 2.747460 CGGGGGCAGTCACACATG 60.747 66.667 0.00 0.00 0.00 3.21
452 490 1.454572 GCAGTCACACATGCCACCAA 61.455 55.000 0.00 0.00 36.41 3.67
453 491 1.031235 CAGTCACACATGCCACCAAA 58.969 50.000 0.00 0.00 0.00 3.28
454 492 1.001048 CAGTCACACATGCCACCAAAG 60.001 52.381 0.00 0.00 0.00 2.77
455 493 1.133823 AGTCACACATGCCACCAAAGA 60.134 47.619 0.00 0.00 0.00 2.52
456 494 1.267806 GTCACACATGCCACCAAAGAG 59.732 52.381 0.00 0.00 0.00 2.85
463 507 4.740822 CCACCAAAGAGGGCCCCG 62.741 72.222 21.43 1.39 43.89 5.73
466 510 4.676951 CCAAAGAGGGCCCCGCAA 62.677 66.667 21.43 0.00 0.00 4.85
486 530 2.034687 GCCACACCATGCCAGAGT 59.965 61.111 0.00 0.00 0.00 3.24
497 541 2.659016 CCAGAGTTCCAGAGCGCA 59.341 61.111 11.47 0.00 0.00 6.09
546 590 4.832608 GCCCCCGCGACAACCTAG 62.833 72.222 8.23 0.00 0.00 3.02
547 591 4.832608 CCCCCGCGACAACCTAGC 62.833 72.222 8.23 0.00 0.00 3.42
552 596 3.488090 GCGACAACCTAGCGCCAC 61.488 66.667 2.29 0.00 44.55 5.01
553 597 2.813908 CGACAACCTAGCGCCACC 60.814 66.667 2.29 0.00 0.00 4.61
554 598 2.663196 GACAACCTAGCGCCACCT 59.337 61.111 2.29 0.00 0.00 4.00
558 602 4.715130 ACCTAGCGCCACCTCCCA 62.715 66.667 2.29 0.00 0.00 4.37
566 610 2.270986 GCCACCTCCCACAAAGCTG 61.271 63.158 0.00 0.00 0.00 4.24
568 612 0.890996 CCACCTCCCACAAAGCTGTC 60.891 60.000 0.00 0.00 31.64 3.51
570 614 1.062488 ACCTCCCACAAAGCTGTCCT 61.062 55.000 0.00 0.00 31.64 3.85
582 626 4.577677 TGTCCTGCGCCAGCCAAA 62.578 61.111 4.18 0.00 44.33 3.28
583 627 4.043200 GTCCTGCGCCAGCCAAAC 62.043 66.667 4.18 0.00 44.33 2.93
587 631 2.046796 TGCGCCAGCCAAACGATA 60.047 55.556 4.18 0.00 44.33 2.92
588 632 2.309764 CTGCGCCAGCCAAACGATAC 62.310 60.000 4.18 0.00 44.33 2.24
590 634 1.807981 CGCCAGCCAAACGATACGA 60.808 57.895 0.00 0.00 0.00 3.43
591 635 1.752501 CGCCAGCCAAACGATACGAG 61.753 60.000 0.00 0.00 0.00 4.18
592 636 2.006772 CCAGCCAAACGATACGAGC 58.993 57.895 0.00 0.00 0.00 5.03
593 637 0.460284 CCAGCCAAACGATACGAGCT 60.460 55.000 0.00 0.00 0.00 4.09
594 638 1.202371 CCAGCCAAACGATACGAGCTA 60.202 52.381 0.00 0.00 0.00 3.32
595 639 1.852895 CAGCCAAACGATACGAGCTAC 59.147 52.381 0.00 0.00 0.00 3.58
596 640 1.202382 AGCCAAACGATACGAGCTACC 60.202 52.381 0.00 0.00 0.00 3.18
597 641 1.474017 CCAAACGATACGAGCTACCG 58.526 55.000 0.00 0.00 0.00 4.02
598 642 1.064505 CCAAACGATACGAGCTACCGA 59.935 52.381 1.33 0.00 0.00 4.69
599 643 2.107178 CAAACGATACGAGCTACCGAC 58.893 52.381 1.33 0.00 0.00 4.79
600 644 1.661341 AACGATACGAGCTACCGACT 58.339 50.000 1.33 0.00 0.00 4.18
601 645 1.216122 ACGATACGAGCTACCGACTC 58.784 55.000 1.33 0.00 0.00 3.36
602 646 0.512085 CGATACGAGCTACCGACTCC 59.488 60.000 1.33 0.00 0.00 3.85
603 647 0.512085 GATACGAGCTACCGACTCCG 59.488 60.000 1.33 0.00 0.00 4.63
604 648 0.179062 ATACGAGCTACCGACTCCGT 60.179 55.000 1.33 0.00 0.00 4.69
605 649 0.391661 TACGAGCTACCGACTCCGTT 60.392 55.000 1.33 0.00 0.00 4.44
606 650 1.062206 CGAGCTACCGACTCCGTTC 59.938 63.158 0.00 0.00 0.00 3.95
607 651 1.432657 GAGCTACCGACTCCGTTCC 59.567 63.158 0.00 0.00 0.00 3.62
608 652 1.001145 AGCTACCGACTCCGTTCCT 60.001 57.895 0.00 0.00 0.00 3.36
609 653 0.254178 AGCTACCGACTCCGTTCCTA 59.746 55.000 0.00 0.00 0.00 2.94
610 654 1.098050 GCTACCGACTCCGTTCCTAA 58.902 55.000 0.00 0.00 0.00 2.69
611 655 1.474077 GCTACCGACTCCGTTCCTAAA 59.526 52.381 0.00 0.00 0.00 1.85
612 656 2.100418 GCTACCGACTCCGTTCCTAAAT 59.900 50.000 0.00 0.00 0.00 1.40
613 657 3.316308 GCTACCGACTCCGTTCCTAAATA 59.684 47.826 0.00 0.00 0.00 1.40
614 658 3.790152 ACCGACTCCGTTCCTAAATAC 57.210 47.619 0.00 0.00 0.00 1.89
615 659 3.091545 ACCGACTCCGTTCCTAAATACA 58.908 45.455 0.00 0.00 0.00 2.29
616 660 3.511146 ACCGACTCCGTTCCTAAATACAA 59.489 43.478 0.00 0.00 0.00 2.41
617 661 4.110482 CCGACTCCGTTCCTAAATACAAG 58.890 47.826 0.00 0.00 0.00 3.16
618 662 4.381292 CCGACTCCGTTCCTAAATACAAGT 60.381 45.833 0.00 0.00 0.00 3.16
619 663 4.797349 CGACTCCGTTCCTAAATACAAGTC 59.203 45.833 0.00 0.00 0.00 3.01
620 664 5.392811 CGACTCCGTTCCTAAATACAAGTCT 60.393 44.000 0.00 0.00 30.48 3.24
621 665 6.356186 ACTCCGTTCCTAAATACAAGTCTT 57.644 37.500 0.00 0.00 0.00 3.01
622 666 6.766429 ACTCCGTTCCTAAATACAAGTCTTT 58.234 36.000 0.00 0.00 0.00 2.52
623 667 7.222161 ACTCCGTTCCTAAATACAAGTCTTTT 58.778 34.615 0.00 0.00 0.00 2.27
624 668 7.718314 ACTCCGTTCCTAAATACAAGTCTTTTT 59.282 33.333 0.00 0.00 0.00 1.94
625 669 9.211485 CTCCGTTCCTAAATACAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
626 670 8.992073 TCCGTTCCTAAATACAAGTCTTTTTAC 58.008 33.333 0.00 0.00 0.00 2.01
627 671 8.776470 CCGTTCCTAAATACAAGTCTTTTTACA 58.224 33.333 0.00 0.00 0.00 2.41
628 672 9.807386 CGTTCCTAAATACAAGTCTTTTTACAG 57.193 33.333 0.00 0.00 0.00 2.74
697 741 7.516198 AGTGTAGATTCACTCATTTTGCTTT 57.484 32.000 0.00 0.00 44.07 3.51
698 742 7.365741 AGTGTAGATTCACTCATTTTGCTTTG 58.634 34.615 0.00 0.00 44.07 2.77
699 743 7.013655 AGTGTAGATTCACTCATTTTGCTTTGT 59.986 33.333 0.00 0.00 44.07 2.83
700 744 8.289618 GTGTAGATTCACTCATTTTGCTTTGTA 58.710 33.333 0.00 0.00 35.68 2.41
701 745 9.013229 TGTAGATTCACTCATTTTGCTTTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
702 746 9.282247 GTAGATTCACTCATTTTGCTTTGTATG 57.718 33.333 0.00 0.00 0.00 2.39
703 747 7.889469 AGATTCACTCATTTTGCTTTGTATGT 58.111 30.769 0.00 0.00 0.00 2.29
704 748 8.362639 AGATTCACTCATTTTGCTTTGTATGTT 58.637 29.630 0.00 0.00 0.00 2.71
705 749 7.697352 TTCACTCATTTTGCTTTGTATGTTG 57.303 32.000 0.00 0.00 0.00 3.33
706 750 7.036996 TCACTCATTTTGCTTTGTATGTTGA 57.963 32.000 0.00 0.00 0.00 3.18
707 751 7.660112 TCACTCATTTTGCTTTGTATGTTGAT 58.340 30.769 0.00 0.00 0.00 2.57
708 752 8.791675 TCACTCATTTTGCTTTGTATGTTGATA 58.208 29.630 0.00 0.00 0.00 2.15
709 753 9.577110 CACTCATTTTGCTTTGTATGTTGATAT 57.423 29.630 0.00 0.00 0.00 1.63
716 760 9.979578 TTTGCTTTGTATGTTGATATTGAAACT 57.020 25.926 0.00 0.00 0.00 2.66
717 761 9.979578 TTGCTTTGTATGTTGATATTGAAACTT 57.020 25.926 0.00 0.00 0.00 2.66
718 762 9.979578 TGCTTTGTATGTTGATATTGAAACTTT 57.020 25.926 0.00 0.00 0.00 2.66
734 778 7.466746 TGAAACTTTGATTTAGGAATGGAGG 57.533 36.000 0.00 0.00 0.00 4.30
735 779 6.437162 TGAAACTTTGATTTAGGAATGGAGGG 59.563 38.462 0.00 0.00 0.00 4.30
736 780 5.796502 ACTTTGATTTAGGAATGGAGGGA 57.203 39.130 0.00 0.00 0.00 4.20
741 785 5.538877 TGATTTAGGAATGGAGGGAGTAGT 58.461 41.667 0.00 0.00 0.00 2.73
794 844 1.680105 CTCGCGTCGCCGTGTAAAAT 61.680 55.000 12.44 0.00 44.70 1.82
816 866 2.927856 TGGGTCCGTCCAGTGCAT 60.928 61.111 0.00 0.00 38.11 3.96
822 872 1.221566 CCGTCCAGTGCATCCATGA 59.778 57.895 0.00 0.00 0.00 3.07
824 874 0.107993 CGTCCAGTGCATCCATGACT 60.108 55.000 0.00 0.00 0.00 3.41
841 891 1.739562 CTGACAAGGCGAGCCAGAC 60.740 63.158 17.18 9.13 38.92 3.51
843 893 1.301716 GACAAGGCGAGCCAGACAA 60.302 57.895 17.18 0.00 38.92 3.18
844 894 1.294659 GACAAGGCGAGCCAGACAAG 61.295 60.000 17.18 1.91 38.92 3.16
866 920 8.867097 ACAAGAGTACTCCTTCAATGTACTAAA 58.133 33.333 19.38 0.00 44.47 1.85
881 935 0.098552 CTAAATCAATGCGGCGCACA 59.901 50.000 38.84 24.03 43.04 4.57
882 936 0.179176 TAAATCAATGCGGCGCACAC 60.179 50.000 38.84 5.90 43.04 3.82
883 937 3.665825 AATCAATGCGGCGCACACG 62.666 57.895 38.84 26.76 43.04 4.49
948 1003 1.077787 CACACCACACCACACCACT 60.078 57.895 0.00 0.00 0.00 4.00
971 1027 2.202544 GCAGTGACGAGAGCGAGG 60.203 66.667 0.00 0.00 41.64 4.63
976 1032 3.894947 GACGAGAGCGAGGGAGCC 61.895 72.222 0.00 0.00 41.64 4.70
979 1035 4.200283 GAGAGCGAGGGAGCCACG 62.200 72.222 0.00 0.00 40.38 4.94
980 1036 4.742649 AGAGCGAGGGAGCCACGA 62.743 66.667 8.93 0.00 39.84 4.35
1488 1584 3.054361 AGGTACCCTGCTTTTACATCCTG 60.054 47.826 8.74 0.00 29.57 3.86
1513 1609 4.082895 GCCATGGCTGATATTCTAAAGCTG 60.083 45.833 29.98 0.00 38.26 4.24
1572 1680 0.311477 TCGGTCGACGTGTTGATTCA 59.689 50.000 9.92 0.00 44.69 2.57
1573 1681 1.133407 CGGTCGACGTGTTGATTCAA 58.867 50.000 9.92 0.00 37.93 2.69
1584 1692 4.259970 CGTGTTGATTCAATCGAGGCTTAG 60.260 45.833 16.36 0.00 0.00 2.18
1691 1845 7.948278 AGCTTAATTAACGCTACTAATCAGG 57.052 36.000 15.93 0.00 31.12 3.86
1692 1846 6.424207 AGCTTAATTAACGCTACTAATCAGGC 59.576 38.462 15.93 4.88 31.12 4.85
1694 1848 7.597743 GCTTAATTAACGCTACTAATCAGGCTA 59.402 37.037 10.54 0.00 0.00 3.93
1695 1849 9.130312 CTTAATTAACGCTACTAATCAGGCTAG 57.870 37.037 0.00 0.00 0.00 3.42
1696 1850 6.651975 ATTAACGCTACTAATCAGGCTAGT 57.348 37.500 0.00 0.00 34.08 2.57
1698 1852 2.548904 ACGCTACTAATCAGGCTAGTCG 59.451 50.000 0.00 0.00 31.98 4.18
1715 1870 6.034683 GGCTAGTCGTCAACAGTAATTAACAG 59.965 42.308 0.00 0.00 0.00 3.16
1962 2123 3.635373 CGGCAGTAAGTCCCTCACTAATA 59.365 47.826 0.00 0.00 32.30 0.98
1967 2128 6.483640 GCAGTAAGTCCCTCACTAATAAATGG 59.516 42.308 0.00 0.00 32.30 3.16
1970 2131 6.636454 AAGTCCCTCACTAATAAATGGTCA 57.364 37.500 0.00 0.00 32.30 4.02
2181 6633 1.537202 CTGTTGTTTCTAGTGCTGGCC 59.463 52.381 0.00 0.00 0.00 5.36
2316 6768 3.673594 CGCAGGACTTCAAGGTACAGTAG 60.674 52.174 0.00 0.00 0.00 2.57
2342 6835 7.625828 ACTACTTGAATTAATTACCACTGCC 57.374 36.000 0.00 0.00 0.00 4.85
2344 6837 4.709886 ACTTGAATTAATTACCACTGCCCC 59.290 41.667 0.00 0.00 0.00 5.80
2345 6838 4.323569 TGAATTAATTACCACTGCCCCA 57.676 40.909 0.00 0.00 0.00 4.96
2415 6921 5.768164 ACGGTCAAATTATTGGTCTTGACTT 59.232 36.000 12.12 0.10 44.52 3.01
2442 7271 2.100631 CGGCAGATTGACGTGGACC 61.101 63.158 0.00 0.00 45.41 4.46
2512 7506 9.747293 GAGTTATTAGTAGTACTGGATTTCACC 57.253 37.037 13.29 0.00 0.00 4.02
2545 7548 3.840666 TGGTAGCATGTCTCTCTTTCCTT 59.159 43.478 0.00 0.00 0.00 3.36
2546 7549 4.287067 TGGTAGCATGTCTCTCTTTCCTTT 59.713 41.667 0.00 0.00 0.00 3.11
2596 7599 4.501400 GCACCTTAATGGCTTTCAGTTGTT 60.501 41.667 0.00 0.00 40.22 2.83
2622 9505 1.202114 TGAATTGGTGATGGCGCTTTC 59.798 47.619 7.64 5.17 0.00 2.62
2757 9654 4.074970 GGTCTTGATTGTGAGTTCATGGT 58.925 43.478 0.00 0.00 0.00 3.55
2844 9747 1.659098 GTTGCACGAATAAGGTCCTCG 59.341 52.381 0.00 0.00 38.53 4.63
2850 9753 4.094442 GCACGAATAAGGTCCTCGATTTTT 59.906 41.667 5.34 0.00 36.45 1.94
2907 9810 0.304705 CAATAACCGATGACGCAGCC 59.695 55.000 0.00 0.00 38.29 4.85
2928 9844 5.005094 GCCCAGTAGAGACGAGATATAACT 58.995 45.833 0.00 0.00 0.00 2.24
2933 9849 7.546667 CCAGTAGAGACGAGATATAACTAGGAC 59.453 44.444 0.00 0.00 0.00 3.85
2967 9887 6.463360 TGACATGTTGCTAGTGACATCTTTA 58.537 36.000 0.00 0.00 34.42 1.85
2982 9902 8.341173 GTGACATCTTTATCTGATTGATGGTTC 58.659 37.037 20.95 14.93 38.88 3.62
2985 9905 8.847196 ACATCTTTATCTGATTGATGGTTCATG 58.153 33.333 20.95 0.00 38.88 3.07
2986 9906 7.812690 TCTTTATCTGATTGATGGTTCATGG 57.187 36.000 0.00 0.00 36.65 3.66
2987 9907 7.348815 TCTTTATCTGATTGATGGTTCATGGT 58.651 34.615 0.00 0.00 36.65 3.55
2998 9918 4.993705 TGGTTCATGGTTAGTCCTTCTT 57.006 40.909 0.00 0.00 37.07 2.52
3017 9937 4.277476 TCTTCCAAGCTGAAGTTTCCAAA 58.723 39.130 12.20 0.00 41.96 3.28
3136 10068 2.158957 TGCTCGATAACAGGGGATCAAC 60.159 50.000 0.00 0.00 0.00 3.18
3141 10078 1.200519 TAACAGGGGATCAACCGAGG 58.799 55.000 0.00 0.00 40.11 4.63
3156 10093 3.013932 AGGCAGGGCTCTTGGAGG 61.014 66.667 0.00 0.00 0.00 4.30
3197 10135 4.439289 GCCTGCAAGTAAGCTTTATCCAAG 60.439 45.833 3.20 0.00 35.29 3.61
3215 10153 3.306364 CCAAGACACCACCTACTCTCAAG 60.306 52.174 0.00 0.00 0.00 3.02
3363 10498 2.727123 TTGAGTTCAAGACCTTGCCA 57.273 45.000 4.94 0.00 40.24 4.92
3364 10499 2.727123 TGAGTTCAAGACCTTGCCAA 57.273 45.000 4.94 0.00 40.24 4.52
3365 10500 2.297701 TGAGTTCAAGACCTTGCCAAC 58.702 47.619 4.94 5.75 40.24 3.77
3366 10501 2.297701 GAGTTCAAGACCTTGCCAACA 58.702 47.619 13.33 0.00 40.24 3.33
3367 10502 2.024414 AGTTCAAGACCTTGCCAACAC 58.976 47.619 13.33 3.86 40.24 3.32
3368 10503 1.748493 GTTCAAGACCTTGCCAACACA 59.252 47.619 4.94 0.00 40.24 3.72
3379 10516 6.512297 ACCTTGCCAACACAGTATTAAAAAG 58.488 36.000 0.00 0.00 0.00 2.27
3394 10531 6.817765 ATTAAAAAGAAGATTCTGCGACCA 57.182 33.333 0.00 0.00 37.65 4.02
3395 10532 6.817765 TTAAAAAGAAGATTCTGCGACCAT 57.182 33.333 0.00 0.00 37.65 3.55
3396 10533 4.691860 AAAAGAAGATTCTGCGACCATG 57.308 40.909 0.00 0.00 37.65 3.66
3397 10534 3.340814 AAGAAGATTCTGCGACCATGT 57.659 42.857 0.00 0.00 37.65 3.21
3433 10599 4.023193 GGGGAGTGTTGAAATATATTGCCG 60.023 45.833 0.00 0.00 0.00 5.69
3435 10601 4.578928 GGAGTGTTGAAATATATTGCCGGT 59.421 41.667 1.90 0.00 0.00 5.28
3443 10609 5.540337 TGAAATATATTGCCGGTCTCTCTCT 59.460 40.000 1.90 0.00 0.00 3.10
3449 10615 0.596082 GCCGGTCTCTCTCTATCAGC 59.404 60.000 1.90 0.00 0.00 4.26
3451 10617 1.879380 CCGGTCTCTCTCTATCAGCTG 59.121 57.143 7.63 7.63 0.00 4.24
3453 10619 2.486370 CGGTCTCTCTCTATCAGCTGGA 60.486 54.545 15.13 2.10 0.00 3.86
3497 10663 3.701040 AGCATGAATTCAATACCCCACAC 59.299 43.478 13.09 0.00 0.00 3.82
3499 10665 4.160252 GCATGAATTCAATACCCCACACTT 59.840 41.667 13.09 0.00 0.00 3.16
3503 10669 7.222000 TGAATTCAATACCCCACACTTTAAC 57.778 36.000 5.45 0.00 0.00 2.01
3512 10678 6.834168 ACCCCACACTTTAACATTCATTAG 57.166 37.500 0.00 0.00 0.00 1.73
3612 13506 3.826157 TCAAACCTTGTAGGCAGGAAATG 59.174 43.478 0.00 0.00 39.63 2.32
3645 13551 3.045601 TGACTTGCAGGCTTAGAGAAC 57.954 47.619 0.00 0.00 0.00 3.01
3734 13640 5.384336 TGGACATGAAAACCTCATCTTGAA 58.616 37.500 0.00 0.00 43.28 2.69
3735 13641 5.474532 TGGACATGAAAACCTCATCTTGAAG 59.525 40.000 0.00 0.00 43.28 3.02
3745 13652 3.117963 CCTCATCTTGAAGAGATTGCCCT 60.118 47.826 0.00 0.00 42.55 5.19
3781 13689 3.609853 TGAAGAGCGCCATATTTGAACT 58.390 40.909 2.29 0.00 0.00 3.01
3987 13908 5.763876 AAGTTACATCCCTTACTCTTGCT 57.236 39.130 0.00 0.00 0.00 3.91
3989 13910 6.869206 AGTTACATCCCTTACTCTTGCTTA 57.131 37.500 0.00 0.00 0.00 3.09
4025 13949 6.373005 TGAATGATCAGGGAAACAAGAGTA 57.627 37.500 0.09 0.00 0.00 2.59
4027 13951 7.405292 TGAATGATCAGGGAAACAAGAGTATT 58.595 34.615 0.09 0.00 0.00 1.89
4069 13994 4.385358 TGCAAAAAGAGGACCTGTTTTC 57.615 40.909 25.05 16.09 36.23 2.29
4144 14070 3.633986 AGATCATTGATTCTTTTCCCGCC 59.366 43.478 0.00 0.00 0.00 6.13
4171 14097 2.606272 AGACGTCGTCGAAAAAGCTTTT 59.394 40.909 18.74 18.74 37.67 2.27
4278 14207 0.116143 TGGGGCTGGCAGGTAAAATT 59.884 50.000 17.64 0.00 0.00 1.82
5105 15079 2.761208 AGATGTAGCAGTAAGAAGGCGT 59.239 45.455 0.00 0.00 0.00 5.68
5350 15411 0.035820 TTGAACTCGGGGGCATACAC 60.036 55.000 0.00 0.00 0.00 2.90
5536 16516 2.358247 CCGGTTGGTGGGACGAAG 60.358 66.667 0.00 0.00 0.00 3.79
5602 16800 2.298661 GGTGGGATGAACCGGGACT 61.299 63.158 6.32 0.00 40.11 3.85
5652 16850 1.219935 CGAACCGGGACTAAAGGGG 59.780 63.158 6.32 0.00 0.00 4.79
5728 16926 1.137697 CCCGTTTATAAGCCCCTCCT 58.862 55.000 0.00 0.00 0.00 3.69
6067 19034 6.290294 AGCCTTTCGGAATAGTGTAAACTA 57.710 37.500 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.362503 AGTGTCCAGATCGGGCGA 60.363 61.111 7.07 0.00 45.31 5.54
1 2 2.105128 GAGTGTCCAGATCGGGCG 59.895 66.667 7.07 0.00 45.31 6.13
3 4 4.034246 TGGAGTGTCCAGATCGGG 57.966 61.111 5.39 5.39 42.67 5.14
19 20 0.183731 GGGCCCCTAGTCTGGATTTG 59.816 60.000 12.23 0.00 0.00 2.32
21 22 1.386057 GGGGCCCCTAGTCTGGATT 60.386 63.158 35.49 0.00 0.00 3.01
25 26 3.384555 TACGGGGGCCCCTAGTCTG 62.385 68.421 39.92 23.93 42.67 3.51
30 31 4.872574 CTGCTACGGGGGCCCCTA 62.873 72.222 39.92 26.11 42.67 3.53
41 42 2.820037 GAAGGTGCCGGCTGCTAC 60.820 66.667 29.70 17.42 42.00 3.58
55 57 2.979676 TGTGCTTGGCTGGCGAAG 60.980 61.111 11.91 11.91 35.35 3.79
60 62 0.322816 ATAGGTGTGTGCTTGGCTGG 60.323 55.000 0.00 0.00 0.00 4.85
62 64 0.962356 GCATAGGTGTGTGCTTGGCT 60.962 55.000 0.00 0.00 37.79 4.75
72 74 2.378634 GGGGAGCTGGCATAGGTGT 61.379 63.158 0.00 0.00 37.23 4.16
78 80 4.101448 GTCGTGGGGAGCTGGCAT 62.101 66.667 0.00 0.00 0.00 4.40
83 85 4.640690 AGTGGGTCGTGGGGAGCT 62.641 66.667 0.00 0.00 42.80 4.09
87 89 3.391382 GAGGAGTGGGTCGTGGGG 61.391 72.222 0.00 0.00 0.00 4.96
88 90 3.391382 GGAGGAGTGGGTCGTGGG 61.391 72.222 0.00 0.00 0.00 4.61
91 93 1.908793 CAGTGGAGGAGTGGGTCGT 60.909 63.158 0.00 0.00 0.00 4.34
101 103 4.767255 GTGGAGCGGCAGTGGAGG 62.767 72.222 1.45 0.00 0.00 4.30
103 105 4.007644 CAGTGGAGCGGCAGTGGA 62.008 66.667 1.45 0.00 0.00 4.02
108 110 4.383861 CTCTGCAGTGGAGCGGCA 62.384 66.667 14.67 0.00 45.57 5.69
111 113 3.655810 GACCCTCTGCAGTGGAGCG 62.656 68.421 31.64 19.21 37.31 5.03
114 116 3.797331 CAGACCCTCTGCAGTGGA 58.203 61.111 31.64 5.14 37.72 4.02
121 123 4.767255 GGCGGTGCAGACCCTCTG 62.767 72.222 0.00 0.00 46.90 3.35
157 171 3.551407 GAGTGGCGATCCCCTCCC 61.551 72.222 0.00 0.00 0.00 4.30
163 177 0.526524 CGACTTGAGAGTGGCGATCC 60.527 60.000 0.00 0.00 35.88 3.36
169 183 0.969894 AGGAACCGACTTGAGAGTGG 59.030 55.000 0.00 0.00 35.88 4.00
172 186 1.257743 TGGAGGAACCGACTTGAGAG 58.742 55.000 0.00 0.00 42.61 3.20
174 188 1.618837 TCTTGGAGGAACCGACTTGAG 59.381 52.381 0.00 0.00 42.61 3.02
179 193 0.673956 GCCTTCTTGGAGGAACCGAC 60.674 60.000 0.00 0.00 42.61 4.79
180 194 1.125093 TGCCTTCTTGGAGGAACCGA 61.125 55.000 0.00 0.00 42.61 4.69
181 195 0.955919 GTGCCTTCTTGGAGGAACCG 60.956 60.000 0.00 0.00 39.17 4.44
183 197 0.110486 TGGTGCCTTCTTGGAGGAAC 59.890 55.000 0.00 0.00 43.65 3.62
185 199 0.620556 GATGGTGCCTTCTTGGAGGA 59.379 55.000 0.00 0.00 39.25 3.71
189 203 3.190878 GCGATGGTGCCTTCTTGG 58.809 61.111 0.00 0.00 39.35 3.61
206 220 1.961277 GGAGGCAACGACACTGTGG 60.961 63.158 13.09 0.00 46.39 4.17
211 225 1.733399 GACGAGGAGGCAACGACAC 60.733 63.158 0.00 0.00 46.39 3.67
212 226 1.901948 AGACGAGGAGGCAACGACA 60.902 57.895 0.00 0.00 46.39 4.35
214 228 2.636412 CCAGACGAGGAGGCAACGA 61.636 63.158 0.00 0.00 46.39 3.85
225 239 2.038813 TCCATGGCCTCCAGACGA 59.961 61.111 6.96 0.00 36.75 4.20
227 241 1.274703 TTCCTCCATGGCCTCCAGAC 61.275 60.000 6.96 0.00 36.75 3.51
228 242 0.984961 CTTCCTCCATGGCCTCCAGA 60.985 60.000 6.96 0.00 36.75 3.86
229 243 1.530771 CTTCCTCCATGGCCTCCAG 59.469 63.158 6.96 0.00 36.75 3.86
230 244 2.683465 GCTTCCTCCATGGCCTCCA 61.683 63.158 6.96 0.00 38.19 3.86
231 245 2.194326 GCTTCCTCCATGGCCTCC 59.806 66.667 6.96 0.00 35.26 4.30
250 264 2.833582 ATCGATGAGGCGGTCGGT 60.834 61.111 0.00 0.15 38.34 4.69
259 273 5.201910 GTCTAGAACTTGTCGATCGATGAG 58.798 45.833 22.50 22.06 0.00 2.90
260 274 4.035324 GGTCTAGAACTTGTCGATCGATGA 59.965 45.833 22.50 11.84 0.00 2.92
262 276 3.315749 GGGTCTAGAACTTGTCGATCGAT 59.684 47.826 22.50 4.16 0.00 3.59
263 277 2.681848 GGGTCTAGAACTTGTCGATCGA 59.318 50.000 15.15 15.15 0.00 3.59
264 278 2.223525 GGGGTCTAGAACTTGTCGATCG 60.224 54.545 9.36 9.36 0.00 3.69
265 279 2.223525 CGGGGTCTAGAACTTGTCGATC 60.224 54.545 7.92 0.00 0.00 3.69
266 280 1.749634 CGGGGTCTAGAACTTGTCGAT 59.250 52.381 7.92 0.00 0.00 3.59
267 281 1.171308 CGGGGTCTAGAACTTGTCGA 58.829 55.000 7.92 0.00 0.00 4.20
269 283 0.108281 GGCGGGGTCTAGAACTTGTC 60.108 60.000 7.92 0.00 0.00 3.18
270 284 1.551019 GGGCGGGGTCTAGAACTTGT 61.551 60.000 7.92 0.00 0.00 3.16
271 285 1.221021 GGGCGGGGTCTAGAACTTG 59.779 63.158 7.92 1.51 0.00 3.16
272 286 0.976590 GAGGGCGGGGTCTAGAACTT 60.977 60.000 7.92 0.00 0.00 2.66
273 287 1.381463 GAGGGCGGGGTCTAGAACT 60.381 63.158 7.92 0.00 0.00 3.01
275 289 0.185416 CTAGAGGGCGGGGTCTAGAA 59.815 60.000 0.00 0.00 43.45 2.10
276 290 1.844839 CTAGAGGGCGGGGTCTAGA 59.155 63.158 0.85 0.00 43.45 2.43
278 292 2.197875 GCTAGAGGGCGGGGTCTA 59.802 66.667 0.00 0.00 0.00 2.59
279 293 4.075793 TGCTAGAGGGCGGGGTCT 62.076 66.667 0.00 0.00 34.52 3.85
293 331 1.376466 GGTGGATGGAGTGTGTGCT 59.624 57.895 0.00 0.00 0.00 4.40
294 332 2.034879 CGGTGGATGGAGTGTGTGC 61.035 63.158 0.00 0.00 0.00 4.57
295 333 2.034879 GCGGTGGATGGAGTGTGTG 61.035 63.158 0.00 0.00 0.00 3.82
299 337 2.436646 GTGGCGGTGGATGGAGTG 60.437 66.667 0.00 0.00 0.00 3.51
300 338 2.607750 AGTGGCGGTGGATGGAGT 60.608 61.111 0.00 0.00 0.00 3.85
380 418 4.344865 GTGTGGGATGTGGGCGGT 62.345 66.667 0.00 0.00 0.00 5.68
387 425 3.621805 TCGTGCGGTGTGGGATGT 61.622 61.111 0.00 0.00 0.00 3.06
393 431 3.688330 GACACGTCGTGCGGTGTG 61.688 66.667 24.80 11.66 46.52 3.82
406 444 1.805945 GATCTGGTGCCGACGACAC 60.806 63.158 5.65 5.65 37.31 3.67
409 447 2.710902 CCTGATCTGGTGCCGACGA 61.711 63.158 10.40 0.00 0.00 4.20
429 467 3.064324 GCATGTGTGACTGCCCCC 61.064 66.667 0.00 0.00 32.15 5.40
439 477 0.540365 CCCTCTTTGGTGGCATGTGT 60.540 55.000 0.00 0.00 0.00 3.72
441 479 1.607467 GCCCTCTTTGGTGGCATGT 60.607 57.895 0.00 0.00 44.70 3.21
463 507 4.722855 GCATGGTGTGGCGGTTGC 62.723 66.667 0.00 0.00 41.71 4.17
472 516 0.037303 CTGGAACTCTGGCATGGTGT 59.963 55.000 0.00 0.00 0.00 4.16
486 530 4.704833 GGTGGCTGCGCTCTGGAA 62.705 66.667 9.73 0.00 0.00 3.53
497 541 3.753434 CGAGCGTGAGAGGTGGCT 61.753 66.667 0.00 0.00 38.70 4.75
530 574 4.832608 GCTAGGTTGTCGCGGGGG 62.833 72.222 6.13 0.00 0.00 5.40
538 582 2.663196 GAGGTGGCGCTAGGTTGT 59.337 61.111 7.64 0.00 0.00 3.32
541 585 4.715130 TGGGAGGTGGCGCTAGGT 62.715 66.667 7.64 0.00 0.00 3.08
543 587 2.463589 TTTGTGGGAGGTGGCGCTAG 62.464 60.000 7.64 0.00 0.00 3.42
544 588 2.463589 CTTTGTGGGAGGTGGCGCTA 62.464 60.000 7.64 0.00 0.00 4.26
545 589 3.850098 CTTTGTGGGAGGTGGCGCT 62.850 63.158 7.64 0.00 0.00 5.92
546 590 3.365265 CTTTGTGGGAGGTGGCGC 61.365 66.667 0.00 0.00 0.00 6.53
547 591 3.365265 GCTTTGTGGGAGGTGGCG 61.365 66.667 0.00 0.00 0.00 5.69
548 592 2.116125 AGCTTTGTGGGAGGTGGC 59.884 61.111 0.00 0.00 0.00 5.01
549 593 0.890996 GACAGCTTTGTGGGAGGTGG 60.891 60.000 8.01 0.00 44.62 4.61
550 594 0.890996 GGACAGCTTTGTGGGAGGTG 60.891 60.000 2.14 2.14 45.52 4.00
551 595 1.062488 AGGACAGCTTTGTGGGAGGT 61.062 55.000 0.00 0.00 0.00 3.85
552 596 0.607489 CAGGACAGCTTTGTGGGAGG 60.607 60.000 0.00 0.00 0.00 4.30
553 597 1.239968 GCAGGACAGCTTTGTGGGAG 61.240 60.000 0.00 0.00 0.00 4.30
554 598 1.228245 GCAGGACAGCTTTGTGGGA 60.228 57.895 0.00 0.00 0.00 4.37
558 602 2.980233 GGCGCAGGACAGCTTTGT 60.980 61.111 10.83 0.00 0.00 2.83
566 610 4.043200 GTTTGGCTGGCGCAGGAC 62.043 66.667 10.83 3.23 38.10 3.85
570 614 2.046796 TATCGTTTGGCTGGCGCA 60.047 55.556 10.83 0.00 38.10 6.09
581 625 1.596727 GAGTCGGTAGCTCGTATCGTT 59.403 52.381 0.00 0.00 36.55 3.85
582 626 1.216122 GAGTCGGTAGCTCGTATCGT 58.784 55.000 0.00 0.00 36.55 3.73
583 627 0.512085 GGAGTCGGTAGCTCGTATCG 59.488 60.000 0.00 0.00 36.50 2.92
584 628 0.512085 CGGAGTCGGTAGCTCGTATC 59.488 60.000 0.00 0.00 34.00 2.24
587 631 1.642952 GAACGGAGTCGGTAGCTCGT 61.643 60.000 3.49 0.00 45.00 4.18
588 632 1.062206 GAACGGAGTCGGTAGCTCG 59.938 63.158 3.49 0.00 45.00 5.03
590 634 0.254178 TAGGAACGGAGTCGGTAGCT 59.746 55.000 3.49 0.00 45.00 3.32
591 635 1.098050 TTAGGAACGGAGTCGGTAGC 58.902 55.000 3.49 0.00 45.00 3.58
592 636 4.336433 TGTATTTAGGAACGGAGTCGGTAG 59.664 45.833 3.49 0.00 45.00 3.18
593 637 4.269183 TGTATTTAGGAACGGAGTCGGTA 58.731 43.478 3.49 0.00 45.00 4.02
594 638 3.091545 TGTATTTAGGAACGGAGTCGGT 58.908 45.455 0.00 0.00 45.00 4.69
595 639 3.788333 TGTATTTAGGAACGGAGTCGG 57.212 47.619 0.00 0.00 45.00 4.79
596 640 4.741342 ACTTGTATTTAGGAACGGAGTCG 58.259 43.478 0.00 0.00 45.00 4.18
597 641 5.963594 AGACTTGTATTTAGGAACGGAGTC 58.036 41.667 0.00 0.00 45.00 3.36
599 643 7.668525 AAAAGACTTGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
600 644 8.992073 GTAAAAAGACTTGTATTTAGGAACGGA 58.008 33.333 0.00 0.00 0.00 4.69
601 645 8.776470 TGTAAAAAGACTTGTATTTAGGAACGG 58.224 33.333 0.00 0.00 0.00 4.44
602 646 9.807386 CTGTAAAAAGACTTGTATTTAGGAACG 57.193 33.333 0.00 0.00 0.00 3.95
674 718 7.141363 ACAAAGCAAAATGAGTGAATCTACAC 58.859 34.615 0.00 0.00 40.60 2.90
675 719 7.275888 ACAAAGCAAAATGAGTGAATCTACA 57.724 32.000 0.00 0.00 0.00 2.74
676 720 9.282247 CATACAAAGCAAAATGAGTGAATCTAC 57.718 33.333 0.00 0.00 0.00 2.59
677 721 9.013229 ACATACAAAGCAAAATGAGTGAATCTA 57.987 29.630 0.00 0.00 0.00 1.98
678 722 7.889469 ACATACAAAGCAAAATGAGTGAATCT 58.111 30.769 0.00 0.00 0.00 2.40
679 723 8.430063 CAACATACAAAGCAAAATGAGTGAATC 58.570 33.333 0.00 0.00 0.00 2.52
680 724 8.143193 TCAACATACAAAGCAAAATGAGTGAAT 58.857 29.630 0.00 0.00 0.00 2.57
681 725 7.487484 TCAACATACAAAGCAAAATGAGTGAA 58.513 30.769 0.00 0.00 0.00 3.18
682 726 7.036996 TCAACATACAAAGCAAAATGAGTGA 57.963 32.000 0.00 0.00 0.00 3.41
683 727 7.878477 ATCAACATACAAAGCAAAATGAGTG 57.122 32.000 0.00 0.00 0.00 3.51
690 734 9.979578 AGTTTCAATATCAACATACAAAGCAAA 57.020 25.926 0.00 0.00 0.00 3.68
691 735 9.979578 AAGTTTCAATATCAACATACAAAGCAA 57.020 25.926 0.00 0.00 0.00 3.91
692 736 9.979578 AAAGTTTCAATATCAACATACAAAGCA 57.020 25.926 0.00 0.00 0.00 3.91
708 752 8.534496 CCTCCATTCCTAAATCAAAGTTTCAAT 58.466 33.333 0.00 0.00 0.00 2.57
709 753 7.039082 CCCTCCATTCCTAAATCAAAGTTTCAA 60.039 37.037 0.00 0.00 0.00 2.69
710 754 6.437162 CCCTCCATTCCTAAATCAAAGTTTCA 59.563 38.462 0.00 0.00 0.00 2.69
711 755 6.663523 TCCCTCCATTCCTAAATCAAAGTTTC 59.336 38.462 0.00 0.00 0.00 2.78
712 756 6.561294 TCCCTCCATTCCTAAATCAAAGTTT 58.439 36.000 0.00 0.00 0.00 2.66
713 757 6.152638 TCCCTCCATTCCTAAATCAAAGTT 57.847 37.500 0.00 0.00 0.00 2.66
714 758 5.254032 ACTCCCTCCATTCCTAAATCAAAGT 59.746 40.000 0.00 0.00 0.00 2.66
715 759 5.760131 ACTCCCTCCATTCCTAAATCAAAG 58.240 41.667 0.00 0.00 0.00 2.77
716 760 5.796502 ACTCCCTCCATTCCTAAATCAAA 57.203 39.130 0.00 0.00 0.00 2.69
717 761 5.970640 ACTACTCCCTCCATTCCTAAATCAA 59.029 40.000 0.00 0.00 0.00 2.57
718 762 5.366768 CACTACTCCCTCCATTCCTAAATCA 59.633 44.000 0.00 0.00 0.00 2.57
719 763 5.743422 GCACTACTCCCTCCATTCCTAAATC 60.743 48.000 0.00 0.00 0.00 2.17
720 764 4.103311 GCACTACTCCCTCCATTCCTAAAT 59.897 45.833 0.00 0.00 0.00 1.40
721 765 3.454812 GCACTACTCCCTCCATTCCTAAA 59.545 47.826 0.00 0.00 0.00 1.85
722 766 3.039011 GCACTACTCCCTCCATTCCTAA 58.961 50.000 0.00 0.00 0.00 2.69
723 767 2.023404 TGCACTACTCCCTCCATTCCTA 60.023 50.000 0.00 0.00 0.00 2.94
724 768 1.273838 TGCACTACTCCCTCCATTCCT 60.274 52.381 0.00 0.00 0.00 3.36
725 769 1.204146 TGCACTACTCCCTCCATTCC 58.796 55.000 0.00 0.00 0.00 3.01
726 770 3.567478 AATGCACTACTCCCTCCATTC 57.433 47.619 0.00 0.00 0.00 2.67
727 771 5.132648 TCATAAATGCACTACTCCCTCCATT 59.867 40.000 0.00 0.00 0.00 3.16
728 772 4.660303 TCATAAATGCACTACTCCCTCCAT 59.340 41.667 0.00 0.00 0.00 3.41
729 773 4.037222 TCATAAATGCACTACTCCCTCCA 58.963 43.478 0.00 0.00 0.00 3.86
730 774 4.689612 TCATAAATGCACTACTCCCTCC 57.310 45.455 0.00 0.00 0.00 4.30
731 775 5.675538 AGTTCATAAATGCACTACTCCCTC 58.324 41.667 0.00 0.00 32.59 4.30
732 776 5.700402 AGTTCATAAATGCACTACTCCCT 57.300 39.130 0.00 0.00 32.59 4.20
733 777 5.449177 GCAAGTTCATAAATGCACTACTCCC 60.449 44.000 0.00 0.00 33.20 4.30
734 778 5.355350 AGCAAGTTCATAAATGCACTACTCC 59.645 40.000 0.00 0.00 41.18 3.85
735 779 6.128172 ACAGCAAGTTCATAAATGCACTACTC 60.128 38.462 0.00 0.00 41.18 2.59
736 780 5.707298 ACAGCAAGTTCATAAATGCACTACT 59.293 36.000 0.00 0.00 41.18 2.57
741 785 4.761227 TCTGACAGCAAGTTCATAAATGCA 59.239 37.500 0.00 0.00 41.18 3.96
787 837 3.370103 GGACGGACCCAGATGATTTTACA 60.370 47.826 0.00 0.00 0.00 2.41
816 866 0.247460 CTCGCCTTGTCAGTCATGGA 59.753 55.000 4.07 0.00 41.99 3.41
822 872 2.210013 TCTGGCTCGCCTTGTCAGT 61.210 57.895 9.65 0.00 36.94 3.41
824 874 2.038814 TTGTCTGGCTCGCCTTGTCA 62.039 55.000 9.65 3.88 36.94 3.58
841 891 9.877178 ATTTAGTACATTGAAGGAGTACTCTTG 57.123 33.333 21.88 12.13 43.50 3.02
843 893 9.256228 TGATTTAGTACATTGAAGGAGTACTCT 57.744 33.333 21.88 3.41 43.50 3.24
844 894 9.871238 TTGATTTAGTACATTGAAGGAGTACTC 57.129 33.333 14.87 14.87 43.50 2.59
866 920 4.164664 CGTGTGCGCCGCATTGAT 62.165 61.111 17.54 0.00 41.91 2.57
881 935 1.009222 GACAAGACGGTCGTGTCGT 60.009 57.895 31.09 12.18 43.60 4.34
882 936 3.824806 GACAAGACGGTCGTGTCG 58.175 61.111 31.09 9.31 43.60 4.35
884 938 0.030369 GTGAGACAAGACGGTCGTGT 59.970 55.000 25.87 25.87 41.60 4.49
885 939 0.997226 CGTGAGACAAGACGGTCGTG 60.997 60.000 20.11 20.11 42.62 4.35
886 940 1.281960 CGTGAGACAAGACGGTCGT 59.718 57.895 1.89 0.00 42.62 4.34
888 942 1.007734 TGCGTGAGACAAGACGGTC 60.008 57.895 0.00 0.00 36.09 4.79
889 943 1.299926 GTGCGTGAGACAAGACGGT 60.300 57.895 0.00 0.00 36.09 4.83
948 1003 3.028366 CTCTCGTCACTGCGCTCGA 62.028 63.158 9.73 10.11 0.00 4.04
971 1027 2.047179 GACCCTGTTCGTGGCTCC 60.047 66.667 0.00 0.00 0.00 4.70
976 1032 2.430244 CCGTCGACCCTGTTCGTG 60.430 66.667 10.58 0.00 40.07 4.35
979 1035 2.999739 TTTGCCCGTCGACCCTGTTC 63.000 60.000 10.58 0.00 0.00 3.18
980 1036 3.109592 TTTGCCCGTCGACCCTGTT 62.110 57.895 10.58 0.00 0.00 3.16
1233 1319 1.352156 GGAAGTAGTGCGCCGTGAAG 61.352 60.000 4.18 0.00 0.00 3.02
1513 1609 2.263077 GTCGCCGATGATATGATGGTC 58.737 52.381 0.00 0.00 0.00 4.02
1584 1692 4.211164 CCTTTGGATTTTTCGGTGCTTTTC 59.789 41.667 0.00 0.00 0.00 2.29
1646 1767 7.145932 AGCTTAAGTACCAATGCTAAAACAG 57.854 36.000 4.02 0.00 0.00 3.16
1691 1845 6.585322 ACTGTTAATTACTGTTGACGACTAGC 59.415 38.462 0.00 0.00 35.64 3.42
1692 1846 9.059485 GTACTGTTAATTACTGTTGACGACTAG 57.941 37.037 0.00 0.00 39.36 2.57
1694 1848 7.594015 CAGTACTGTTAATTACTGTTGACGACT 59.406 37.037 15.06 0.00 40.19 4.18
1695 1849 7.717678 CAGTACTGTTAATTACTGTTGACGAC 58.282 38.462 15.06 0.00 40.19 4.34
1696 1850 7.862741 CAGTACTGTTAATTACTGTTGACGA 57.137 36.000 15.06 0.00 40.19 4.20
1739 1894 0.179113 CAGCGCCCACACAAGTTTTT 60.179 50.000 2.29 0.00 0.00 1.94
1740 1895 1.319614 ACAGCGCCCACACAAGTTTT 61.320 50.000 2.29 0.00 0.00 2.43
1967 2128 7.059488 CGCACGAATATAATAGGCAAAAATGAC 59.941 37.037 0.00 0.00 0.00 3.06
1970 2131 6.855914 CACGCACGAATATAATAGGCAAAAAT 59.144 34.615 0.00 0.00 0.00 1.82
2032 5811 2.418609 CCGGCAGACACAGTCAATCATA 60.419 50.000 0.00 0.00 34.60 2.15
2044 6462 1.704641 ATACTATGAGCCGGCAGACA 58.295 50.000 31.54 24.58 0.00 3.41
2145 6574 1.959042 ACAGTCAACAGCCACAAGAG 58.041 50.000 0.00 0.00 0.00 2.85
2181 6633 2.486472 ACTTGAGCCTGAACCATGAG 57.514 50.000 0.00 0.00 0.00 2.90
2316 6768 8.610035 GGCAGTGGTAATTAATTCAAGTAGTAC 58.390 37.037 3.39 0.00 0.00 2.73
2415 6921 0.245266 TCAATCTGCCGTGCGTTCTA 59.755 50.000 0.00 0.00 0.00 2.10
2442 7271 4.682482 CTGCAGCAGACGGACGTAGTAG 62.682 59.091 18.42 0.00 34.89 2.57
2512 7506 0.532573 ATGCTACCAGACGACACCAG 59.467 55.000 0.00 0.00 0.00 4.00
2545 7548 5.586877 AGGGTACTGATAACACTACAGGAA 58.413 41.667 0.00 0.00 36.17 3.36
2546 7549 5.202746 AGGGTACTGATAACACTACAGGA 57.797 43.478 0.00 0.00 36.17 3.86
2596 7599 2.687425 CGCCATCACCAATTCATAACCA 59.313 45.455 0.00 0.00 0.00 3.67
2622 9505 7.572523 TCATTAAACTCCATGCTAATGAAGG 57.427 36.000 1.83 0.00 37.66 3.46
2679 9576 2.614779 CATCTCAGTCACGCACTTGAT 58.385 47.619 0.00 0.00 30.26 2.57
2712 9609 3.072915 TCACCAAGACATCCACATCACTT 59.927 43.478 0.00 0.00 0.00 3.16
2907 9810 7.546667 GTCCTAGTTATATCTCGTCTCTACTGG 59.453 44.444 0.00 0.00 0.00 4.00
2928 9844 6.356556 CAACATGTCATTATTCCCAGTCCTA 58.643 40.000 0.00 0.00 0.00 2.94
2933 9849 5.824624 ACTAGCAACATGTCATTATTCCCAG 59.175 40.000 0.00 0.00 0.00 4.45
2967 9887 6.666678 ACTAACCATGAACCATCAATCAGAT 58.333 36.000 0.00 0.00 39.49 2.90
2982 9902 3.691609 GCTTGGAAGAAGGACTAACCATG 59.308 47.826 0.00 0.00 42.04 3.66
2985 9905 3.008049 TCAGCTTGGAAGAAGGACTAACC 59.992 47.826 0.00 0.00 39.35 2.85
2986 9906 4.273148 TCAGCTTGGAAGAAGGACTAAC 57.727 45.455 0.00 0.00 0.00 2.34
2987 9907 4.348168 ACTTCAGCTTGGAAGAAGGACTAA 59.652 41.667 18.03 0.00 45.66 2.24
3017 9937 8.359642 TCAGCAAAATAAACAGCTGTATCTTTT 58.640 29.630 22.01 20.34 0.00 2.27
3136 10068 4.479993 CCAAGAGCCCTGCCTCGG 62.480 72.222 0.00 0.00 36.95 4.63
3141 10078 2.270527 GACCTCCAAGAGCCCTGC 59.729 66.667 0.00 0.00 0.00 4.85
3156 10093 0.315251 GCCCTGAAGGTTTTGCTGAC 59.685 55.000 0.00 0.00 38.26 3.51
3197 10135 1.618837 TGCTTGAGAGTAGGTGGTGTC 59.381 52.381 0.00 0.00 0.00 3.67
3215 10153 8.443953 AGAAAGAATCTCCTTGTATGTTATGC 57.556 34.615 0.00 0.00 30.46 3.14
3358 10493 8.001881 TCTTCTTTTTAATACTGTGTTGGCAA 57.998 30.769 0.00 0.00 0.00 4.52
3363 10498 9.899226 GCAGAATCTTCTTTTTAATACTGTGTT 57.101 29.630 0.00 0.00 34.74 3.32
3364 10499 8.230486 CGCAGAATCTTCTTTTTAATACTGTGT 58.770 33.333 0.00 0.00 34.74 3.72
3365 10500 8.443160 TCGCAGAATCTTCTTTTTAATACTGTG 58.557 33.333 0.00 0.00 34.74 3.66
3366 10501 8.443937 GTCGCAGAATCTTCTTTTTAATACTGT 58.556 33.333 0.00 0.00 39.69 3.55
3367 10502 7.905493 GGTCGCAGAATCTTCTTTTTAATACTG 59.095 37.037 0.00 0.00 39.69 2.74
3368 10503 7.606456 TGGTCGCAGAATCTTCTTTTTAATACT 59.394 33.333 0.00 0.00 39.69 2.12
3379 10516 2.898705 AGACATGGTCGCAGAATCTTC 58.101 47.619 0.00 0.00 39.69 2.87
3394 10531 3.209091 CCCCCTCACGTCTAGACAT 57.791 57.895 22.37 4.34 0.00 3.06
3395 10532 4.757773 CCCCCTCACGTCTAGACA 57.242 61.111 22.37 2.48 0.00 3.41
3418 10584 6.042093 AGAGAGAGACCGGCAATATATTTCAA 59.958 38.462 0.00 0.00 0.00 2.69
3433 10599 3.222173 TCCAGCTGATAGAGAGAGACC 57.778 52.381 17.39 0.00 0.00 3.85
3435 10601 4.518278 AGTTCCAGCTGATAGAGAGAGA 57.482 45.455 17.39 0.00 0.00 3.10
3443 10609 3.244875 TGCTCCAAAAGTTCCAGCTGATA 60.245 43.478 17.39 0.00 0.00 2.15
3449 10615 2.035066 CCAGTTGCTCCAAAAGTTCCAG 59.965 50.000 0.00 0.00 0.00 3.86
3451 10617 1.269778 GCCAGTTGCTCCAAAAGTTCC 60.270 52.381 0.00 0.00 36.87 3.62
3512 10678 8.990163 TTAATCCCATGTTTTTCTCCCTATAC 57.010 34.615 0.00 0.00 0.00 1.47
3734 13640 0.617413 CACCACTCAGGGCAATCTCT 59.383 55.000 0.00 0.00 43.89 3.10
3735 13641 0.615331 TCACCACTCAGGGCAATCTC 59.385 55.000 0.00 0.00 43.89 2.75
3745 13652 4.569943 GCTCTTCATTAGTTCACCACTCA 58.430 43.478 0.00 0.00 36.88 3.41
3781 13689 4.869861 CACAACGTCAGTCATCATCCATTA 59.130 41.667 0.00 0.00 0.00 1.90
3967 13888 6.403878 TGTAAGCAAGAGTAAGGGATGTAAC 58.596 40.000 0.00 0.00 0.00 2.50
3989 13910 9.645128 TCCCTGATCATTCATTTAATGTAATGT 57.355 29.630 19.32 12.41 44.58 2.71
4013 13937 9.498176 TTTGGTAACTCTAATACTCTTGTTTCC 57.502 33.333 0.00 0.00 37.61 3.13
4025 13949 6.595716 GCATGACTCAGTTTGGTAACTCTAAT 59.404 38.462 0.00 0.00 42.67 1.73
4027 13951 5.011635 TGCATGACTCAGTTTGGTAACTCTA 59.988 40.000 0.00 0.00 42.67 2.43
4069 13994 3.340814 TGCTTAGCAGAGGAGGAAAAG 57.659 47.619 1.39 0.00 33.32 2.27
4144 14070 2.775359 TTTCGACGACGTCTGCTCCG 62.775 60.000 24.36 11.82 40.69 4.63
4171 14097 3.694538 TACAGGCTCGCTGCTGCA 61.695 61.111 16.29 0.88 42.39 4.41
4278 14207 6.389906 CACATGTATGTTACTGTCAGTCAGA 58.610 40.000 9.26 0.00 41.83 3.27
5105 15079 6.957920 TTCCTCAACTGTGAAAATCAATGA 57.042 33.333 0.00 0.00 31.88 2.57
5233 15289 3.179443 TCTGGTGTTGAGTGACAAGTC 57.821 47.619 0.00 0.00 39.30 3.01
5350 15411 5.291128 CCCATTTTCTACTAGTGCAAGTACG 59.709 44.000 5.39 0.00 0.00 3.67
5602 16800 1.214424 GGGACTAATGGGCTGCCTTTA 59.786 52.381 19.68 15.00 0.00 1.85
5652 16850 2.737376 GACCGCAACGAGGACCAC 60.737 66.667 0.00 0.00 0.00 4.16
5728 16926 1.271054 GGAGCTCAACAAGGCAGAGAA 60.271 52.381 17.19 0.00 0.00 2.87
6067 19034 0.390340 CACGGAGCTATGTGCAGTGT 60.390 55.000 5.01 0.00 45.94 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.