Multiple sequence alignment - TraesCS7B01G420200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G420200 chr7B 100.000 2234 0 0 1 2234 689727023 689724790 0 4126
1 TraesCS7B01G420200 chr7B 96.119 876 30 2 1362 2234 259296039 259295165 0 1426
2 TraesCS7B01G420200 chr7B 95.543 875 37 1 1362 2234 678348721 678347847 0 1399
3 TraesCS7B01G420200 chr6B 96.571 875 27 3 1362 2234 500088825 500087952 0 1447
4 TraesCS7B01G420200 chr3B 96.347 876 28 2 1362 2234 154630830 154629956 0 1437
5 TraesCS7B01G420200 chr3B 95.890 876 32 4 1361 2234 106433424 106434297 0 1415
6 TraesCS7B01G420200 chr3B 81.525 1364 241 11 1 1359 322008392 322007035 0 1112
7 TraesCS7B01G420200 chr4B 96.220 873 32 1 1362 2234 76249212 76248341 0 1428
8 TraesCS7B01G420200 chr5B 95.662 876 35 3 1360 2234 576451868 576450995 0 1404
9 TraesCS7B01G420200 chr5B 77.210 1369 297 11 1 1361 374186908 374188269 0 785
10 TraesCS7B01G420200 chr2B 95.553 877 37 2 1360 2234 508354751 508353875 0 1402
11 TraesCS7B01G420200 chr2B 77.097 1371 290 19 1 1361 412926372 412927728 0 771
12 TraesCS7B01G420200 chrUn 95.227 880 36 5 1359 2234 287035081 287035958 0 1387
13 TraesCS7B01G420200 chr4D 83.615 1361 212 9 1 1356 449477954 449479308 0 1267
14 TraesCS7B01G420200 chr5A 83.333 1362 221 6 1 1359 472550055 472548697 0 1253
15 TraesCS7B01G420200 chr7D 77.137 1369 291 19 2 1359 254167385 254168742 0 774
16 TraesCS7B01G420200 chr6A 76.277 1370 294 24 5 1361 596616530 596615179 0 701


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G420200 chr7B 689724790 689727023 2233 True 4126 4126 100.000 1 2234 1 chr7B.!!$R3 2233
1 TraesCS7B01G420200 chr7B 259295165 259296039 874 True 1426 1426 96.119 1362 2234 1 chr7B.!!$R1 872
2 TraesCS7B01G420200 chr7B 678347847 678348721 874 True 1399 1399 95.543 1362 2234 1 chr7B.!!$R2 872
3 TraesCS7B01G420200 chr6B 500087952 500088825 873 True 1447 1447 96.571 1362 2234 1 chr6B.!!$R1 872
4 TraesCS7B01G420200 chr3B 154629956 154630830 874 True 1437 1437 96.347 1362 2234 1 chr3B.!!$R1 872
5 TraesCS7B01G420200 chr3B 106433424 106434297 873 False 1415 1415 95.890 1361 2234 1 chr3B.!!$F1 873
6 TraesCS7B01G420200 chr3B 322007035 322008392 1357 True 1112 1112 81.525 1 1359 1 chr3B.!!$R2 1358
7 TraesCS7B01G420200 chr4B 76248341 76249212 871 True 1428 1428 96.220 1362 2234 1 chr4B.!!$R1 872
8 TraesCS7B01G420200 chr5B 576450995 576451868 873 True 1404 1404 95.662 1360 2234 1 chr5B.!!$R1 874
9 TraesCS7B01G420200 chr5B 374186908 374188269 1361 False 785 785 77.210 1 1361 1 chr5B.!!$F1 1360
10 TraesCS7B01G420200 chr2B 508353875 508354751 876 True 1402 1402 95.553 1360 2234 1 chr2B.!!$R1 874
11 TraesCS7B01G420200 chr2B 412926372 412927728 1356 False 771 771 77.097 1 1361 1 chr2B.!!$F1 1360
12 TraesCS7B01G420200 chrUn 287035081 287035958 877 False 1387 1387 95.227 1359 2234 1 chrUn.!!$F1 875
13 TraesCS7B01G420200 chr4D 449477954 449479308 1354 False 1267 1267 83.615 1 1356 1 chr4D.!!$F1 1355
14 TraesCS7B01G420200 chr5A 472548697 472550055 1358 True 1253 1253 83.333 1 1359 1 chr5A.!!$R1 1358
15 TraesCS7B01G420200 chr7D 254167385 254168742 1357 False 774 774 77.137 2 1359 1 chr7D.!!$F1 1357
16 TraesCS7B01G420200 chr6A 596615179 596616530 1351 True 701 701 76.277 5 1361 1 chr6A.!!$R1 1356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 611 0.178995 TCAGGCATTCCAAGTGTGCA 60.179 50.0 0.0 0.0 40.53 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 1882 1.134699 TGAGAGGATCGTTGGTGATGC 60.135 52.381 0.0 0.0 42.67 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.243336 GTTAATCAGCGCCCGTATAGAG 58.757 50.000 2.29 0.00 0.00 2.43
111 112 5.488341 GAATGTCAGGTTAAGGAACTGCTA 58.512 41.667 0.00 0.00 40.86 3.49
114 115 4.021368 TGTCAGGTTAAGGAACTGCTAGAC 60.021 45.833 0.00 0.00 40.86 2.59
115 116 4.021368 GTCAGGTTAAGGAACTGCTAGACA 60.021 45.833 0.00 0.00 40.86 3.41
116 117 4.777896 TCAGGTTAAGGAACTGCTAGACAT 59.222 41.667 0.00 0.00 40.86 3.06
153 154 1.162698 GTACCAGCCCGTTTTCTTCC 58.837 55.000 0.00 0.00 0.00 3.46
156 157 2.033602 AGCCCGTTTTCTTCCCCG 59.966 61.111 0.00 0.00 0.00 5.73
157 158 2.032987 GCCCGTTTTCTTCCCCGA 59.967 61.111 0.00 0.00 0.00 5.14
183 184 7.559897 ACTTTACTTGTGAAGAAAAAGGATGGA 59.440 33.333 11.39 0.00 38.32 3.41
207 208 5.448654 ACATGGCAACTATGTGTGGATTAT 58.551 37.500 0.00 0.00 37.08 1.28
259 260 6.134535 ACAAGTACCCAGTTCCAATCATTA 57.865 37.500 0.00 0.00 0.00 1.90
268 269 8.061304 ACCCAGTTCCAATCATTAATGAGTTAT 58.939 33.333 21.97 4.01 40.64 1.89
285 286 5.880332 TGAGTTATTTGATGACTTGGTAGGC 59.120 40.000 0.00 0.00 0.00 3.93
351 352 5.097234 CAGATAAGATTGGTAGAGGGGGAT 58.903 45.833 0.00 0.00 0.00 3.85
352 353 5.188751 CAGATAAGATTGGTAGAGGGGGATC 59.811 48.000 0.00 0.00 0.00 3.36
363 364 5.425862 GGTAGAGGGGGATCAATATAAGACC 59.574 48.000 0.00 0.00 0.00 3.85
366 367 2.572104 GGGGGATCAATATAAGACCGCT 59.428 50.000 0.00 0.00 0.00 5.52
420 421 0.739462 TCATGTCGTTTGGGCTAGCG 60.739 55.000 9.00 0.00 0.00 4.26
438 440 2.032681 GCTGCACCTCCGACCTTT 59.967 61.111 0.00 0.00 0.00 3.11
443 445 0.458669 GCACCTCCGACCTTTATCGA 59.541 55.000 0.00 0.00 45.13 3.59
444 446 1.068741 GCACCTCCGACCTTTATCGAT 59.931 52.381 2.16 2.16 45.13 3.59
464 466 4.329801 CGATGCTATGACTTGTACTTTGCA 59.670 41.667 0.00 0.00 0.00 4.08
480 482 6.115448 ACTTTGCAACCTCTACTATGAGTT 57.885 37.500 0.00 0.00 32.50 3.01
482 484 6.998673 ACTTTGCAACCTCTACTATGAGTTTT 59.001 34.615 0.00 0.00 32.50 2.43
537 539 8.594881 TTTTCAGTAAAACTTTGAAACAGCAA 57.405 26.923 0.00 0.00 39.68 3.91
584 586 3.562343 ACTGCTCCGTAGAGATCACTA 57.438 47.619 0.00 0.00 43.39 2.74
593 595 4.260990 CCGTAGAGATCACTAGCAAGTCAG 60.261 50.000 0.00 0.00 31.97 3.51
597 599 2.770802 AGATCACTAGCAAGTCAGGCAT 59.229 45.455 0.00 0.00 31.97 4.40
609 611 0.178995 TCAGGCATTCCAAGTGTGCA 60.179 50.000 0.00 0.00 40.53 4.57
615 617 0.527565 ATTCCAAGTGTGCATTCGGC 59.472 50.000 0.00 0.00 45.13 5.54
619 621 0.244450 CAAGTGTGCATTCGGCCAAT 59.756 50.000 2.24 0.00 43.89 3.16
625 627 1.314534 TGCATTCGGCCAATGACAGG 61.315 55.000 23.75 5.42 44.40 4.00
634 636 2.159198 GGCCAATGACAGGTTGCTTATG 60.159 50.000 0.00 0.00 0.00 1.90
669 671 1.597027 CGAGCGTGGGGTTTCAACT 60.597 57.895 0.00 0.00 0.00 3.16
684 686 5.942826 GGTTTCAACTGATCCAGAGAAGATT 59.057 40.000 0.45 0.00 33.59 2.40
687 689 5.975282 TCAACTGATCCAGAGAAGATTGAG 58.025 41.667 0.45 0.00 35.18 3.02
696 698 5.832595 TCCAGAGAAGATTGAGACTATCAGG 59.167 44.000 0.00 0.00 39.68 3.86
719 721 0.608856 TGGCATGTTCCTCGCAACAT 60.609 50.000 0.00 2.43 46.00 2.71
790 792 2.677836 GTCAAGCACTTCGGCATTATCA 59.322 45.455 0.00 0.00 35.83 2.15
792 794 1.668419 AGCACTTCGGCATTATCACC 58.332 50.000 0.00 0.00 35.83 4.02
804 806 3.474600 CATTATCACCAGGCCTCTCTTG 58.525 50.000 0.00 0.00 0.00 3.02
812 814 2.419851 CCAGGCCTCTCTTGAATCTGTC 60.420 54.545 0.00 0.00 0.00 3.51
822 824 7.607223 CCTCTCTTGAATCTGTCAAAGAAGAAT 59.393 37.037 0.00 0.00 45.67 2.40
841 843 2.746279 TCACCCATTTGTGTGGACTT 57.254 45.000 0.00 0.00 42.02 3.01
842 844 2.305928 TCACCCATTTGTGTGGACTTG 58.694 47.619 0.00 0.00 42.02 3.16
895 897 3.008813 ACAAAGTCTGATCTCTGCACCAT 59.991 43.478 0.00 0.00 0.00 3.55
899 901 2.093288 GTCTGATCTCTGCACCATTCCA 60.093 50.000 0.00 0.00 0.00 3.53
910 912 0.609662 ACCATTCCAGCATTTGCCAC 59.390 50.000 0.00 0.00 43.38 5.01
944 951 5.297547 ACAGTTTGTCATTGATACAGACGT 58.702 37.500 0.00 0.00 37.12 4.34
967 974 1.064017 GTGATTATGGAGTGGGGGCAA 60.064 52.381 0.00 0.00 0.00 4.52
981 988 0.532115 GGGCAATGTTACAGCAAGGG 59.468 55.000 0.00 0.00 0.00 3.95
982 989 1.544724 GGCAATGTTACAGCAAGGGA 58.455 50.000 0.00 0.00 0.00 4.20
988 995 1.075374 TGTTACAGCAAGGGAGGCATT 59.925 47.619 0.00 0.00 0.00 3.56
1011 1018 1.448985 TCGCTTACATGAGCAAACCC 58.551 50.000 0.00 0.00 42.83 4.11
1061 1068 5.303971 CACCTATGAGAAGGAATGCTTAGG 58.696 45.833 0.00 0.00 39.15 2.69
1073 1080 5.846714 AGGAATGCTTAGGTATACTCATGGT 59.153 40.000 2.25 0.00 0.00 3.55
1101 1108 2.937873 GCAATGGCGTCCCTACTTACAA 60.938 50.000 0.00 0.00 0.00 2.41
1115 1122 8.106462 TCCCTACTTACAACATGATGAATTTCA 58.894 33.333 10.29 0.75 0.00 2.69
1273 1280 0.038166 AGATGCATTGTCCCACCGTT 59.962 50.000 0.00 0.00 0.00 4.44
1277 1284 2.282887 ATTGTCCCACCGTTGCCC 60.283 61.111 0.00 0.00 0.00 5.36
1282 1289 3.636231 CCCACCGTTGCCCTGAGA 61.636 66.667 0.00 0.00 0.00 3.27
1288 1295 2.035832 CACCGTTGCCCTGAGAAAAATT 59.964 45.455 0.00 0.00 0.00 1.82
1293 1300 4.455877 CGTTGCCCTGAGAAAAATTAGTCT 59.544 41.667 0.00 0.00 0.00 3.24
1310 1317 6.954487 TTAGTCTATGGCGATTTCAGTCTA 57.046 37.500 0.00 0.00 0.00 2.59
1349 1358 4.598807 TGATGACATCAGGGCCAGTTATAT 59.401 41.667 14.24 0.00 33.59 0.86
1377 1386 2.682856 CCCACTGATACGTCCATTTTGG 59.317 50.000 0.00 0.00 39.43 3.28
1522 1531 4.222336 TGGAATTCTGGCTGAAAAAGGAA 58.778 39.130 10.95 0.00 38.29 3.36
1563 1572 3.135712 TCTGCACAACTCCAAAAGTCCTA 59.864 43.478 0.00 0.00 37.17 2.94
1622 1631 7.500559 AGAATTTATGAGCGAAAGAAATAGGCT 59.499 33.333 0.00 0.00 36.51 4.58
1707 1723 0.320374 TTTCGGCGACCATCTTCTGT 59.680 50.000 10.16 0.00 0.00 3.41
1887 1904 3.801698 CATCACCAACGATCCTCTCATT 58.198 45.455 0.00 0.00 0.00 2.57
2143 2160 6.989659 TGTGAGTAGTTACTTTAGTTCCTGG 58.010 40.000 0.00 0.00 36.50 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 5.009010 TCTCATTTTTGAGCTCTGGTTTGTC 59.991 40.000 16.19 0.00 35.97 3.18
87 88 3.125316 GCAGTTCCTTAACCTGACATTCG 59.875 47.826 0.00 0.00 36.15 3.34
90 91 4.777896 TCTAGCAGTTCCTTAACCTGACAT 59.222 41.667 0.00 0.00 36.15 3.06
91 92 4.021368 GTCTAGCAGTTCCTTAACCTGACA 60.021 45.833 0.00 0.00 36.15 3.58
111 112 0.477204 CCCTGATGATGCCCATGTCT 59.523 55.000 0.00 0.00 35.17 3.41
114 115 0.769247 TCTCCCTGATGATGCCCATG 59.231 55.000 0.00 0.00 35.17 3.66
115 116 1.065647 CTCTCCCTGATGATGCCCAT 58.934 55.000 0.00 0.00 38.43 4.00
116 117 0.326904 ACTCTCCCTGATGATGCCCA 60.327 55.000 0.00 0.00 0.00 5.36
153 154 5.744666 TTTTCTTCACAAGTAAAGTCGGG 57.255 39.130 0.00 0.00 0.00 5.14
156 157 7.862873 CCATCCTTTTTCTTCACAAGTAAAGTC 59.137 37.037 0.00 0.00 33.51 3.01
157 158 7.559897 TCCATCCTTTTTCTTCACAAGTAAAGT 59.440 33.333 0.00 0.00 33.51 2.66
183 184 3.153369 TCCACACATAGTTGCCATGTT 57.847 42.857 0.00 0.00 34.39 2.71
195 196 8.355169 GCATTCAAACATCTATAATCCACACAT 58.645 33.333 0.00 0.00 0.00 3.21
207 208 6.822667 AGTGTCATTGCATTCAAACATCTA 57.177 33.333 0.00 0.00 35.56 1.98
236 237 4.657814 ATGATTGGAACTGGGTACTTGT 57.342 40.909 0.00 0.00 0.00 3.16
259 260 7.067494 GCCTACCAAGTCATCAAATAACTCATT 59.933 37.037 0.00 0.00 0.00 2.57
268 269 1.003118 AGCGCCTACCAAGTCATCAAA 59.997 47.619 2.29 0.00 0.00 2.69
276 277 1.592669 CCATCGAGCGCCTACCAAG 60.593 63.158 2.29 0.00 0.00 3.61
285 286 0.108615 ACTTGGAGAACCATCGAGCG 60.109 55.000 0.00 0.00 46.34 5.03
341 342 5.269991 CGGTCTTATATTGATCCCCCTCTA 58.730 45.833 0.00 0.00 0.00 2.43
351 352 7.388224 TGTGTTGTAAAAGCGGTCTTATATTGA 59.612 33.333 0.00 0.00 31.02 2.57
352 353 7.523219 TGTGTTGTAAAAGCGGTCTTATATTG 58.477 34.615 0.00 0.00 31.02 1.90
363 364 3.564511 CCCTGAATGTGTTGTAAAAGCG 58.435 45.455 0.00 0.00 0.00 4.68
366 367 5.295950 CAATGCCCTGAATGTGTTGTAAAA 58.704 37.500 0.00 0.00 0.00 1.52
420 421 2.180159 TAAAGGTCGGAGGTGCAGCC 62.180 60.000 13.29 4.65 37.58 4.85
432 434 5.986135 ACAAGTCATAGCATCGATAAAGGTC 59.014 40.000 0.00 0.00 0.00 3.85
438 440 6.420903 GCAAAGTACAAGTCATAGCATCGATA 59.579 38.462 0.00 0.00 0.00 2.92
443 445 5.106157 GGTTGCAAAGTACAAGTCATAGCAT 60.106 40.000 0.00 0.00 0.00 3.79
444 446 4.215399 GGTTGCAAAGTACAAGTCATAGCA 59.785 41.667 0.00 0.00 0.00 3.49
537 539 2.461695 ACCTGACGAAGATGATCCACT 58.538 47.619 0.00 0.00 0.00 4.00
584 586 1.202976 ACTTGGAATGCCTGACTTGCT 60.203 47.619 0.00 0.00 34.31 3.91
593 595 1.733389 CGAATGCACACTTGGAATGCC 60.733 52.381 0.00 0.00 38.63 4.40
597 599 1.523154 GGCCGAATGCACACTTGGAA 61.523 55.000 0.00 0.00 43.89 3.53
609 611 1.176527 CAACCTGTCATTGGCCGAAT 58.823 50.000 0.00 0.00 0.00 3.34
615 617 3.119388 CCACATAAGCAACCTGTCATTGG 60.119 47.826 0.00 0.00 0.00 3.16
619 621 1.271871 CCCCACATAAGCAACCTGTCA 60.272 52.381 0.00 0.00 0.00 3.58
625 627 1.134946 GACATGCCCCACATAAGCAAC 59.865 52.381 0.00 0.00 40.46 4.17
634 636 0.676466 TCGTCAATGACATGCCCCAC 60.676 55.000 14.24 0.00 32.09 4.61
669 671 7.065504 TGATAGTCTCAATCTTCTCTGGATCA 58.934 38.462 0.00 0.00 0.00 2.92
684 686 2.820178 TGCCACTTCCTGATAGTCTCA 58.180 47.619 0.00 0.00 0.00 3.27
687 689 3.550437 ACATGCCACTTCCTGATAGTC 57.450 47.619 0.00 0.00 0.00 2.59
696 698 0.955428 TGCGAGGAACATGCCACTTC 60.955 55.000 0.00 0.00 0.00 3.01
719 721 1.337823 GGAAGCTACGCACCTCTTTGA 60.338 52.381 0.00 0.00 0.00 2.69
790 792 1.558756 CAGATTCAAGAGAGGCCTGGT 59.441 52.381 12.00 0.00 0.00 4.00
792 794 2.235650 TGACAGATTCAAGAGAGGCCTG 59.764 50.000 12.00 0.00 0.00 4.85
804 806 5.707298 TGGGTGATTCTTCTTTGACAGATTC 59.293 40.000 0.00 0.00 0.00 2.52
812 814 5.846203 ACACAAATGGGTGATTCTTCTTTG 58.154 37.500 4.19 0.00 41.32 2.77
841 843 5.277154 GCTCAAACGCTTTAGTAGTTTCACA 60.277 40.000 0.00 0.00 36.12 3.58
842 844 5.050295 AGCTCAAACGCTTTAGTAGTTTCAC 60.050 40.000 0.00 0.00 36.74 3.18
871 873 3.817647 GGTGCAGAGATCAGACTTTGTTT 59.182 43.478 0.00 0.00 0.00 2.83
895 897 2.367894 TGAAATGTGGCAAATGCTGGAA 59.632 40.909 5.25 0.00 41.70 3.53
899 901 3.472283 TTGTGAAATGTGGCAAATGCT 57.528 38.095 5.25 0.00 41.70 3.79
944 951 1.563879 CCCCCACTCCATAATCACACA 59.436 52.381 0.00 0.00 0.00 3.72
967 974 0.698238 TGCCTCCCTTGCTGTAACAT 59.302 50.000 0.00 0.00 0.00 2.71
981 988 1.852942 TGTAAGCGATCGAATGCCTC 58.147 50.000 21.57 0.00 0.00 4.70
982 989 2.138320 CATGTAAGCGATCGAATGCCT 58.862 47.619 21.57 2.33 0.00 4.75
988 995 2.577449 TTGCTCATGTAAGCGATCGA 57.423 45.000 21.57 0.00 45.54 3.59
1011 1018 1.242076 CTCTGTGTTTGGGAGCCAAG 58.758 55.000 0.00 0.00 44.84 3.61
1061 1068 2.361119 TGCTCCACGACCATGAGTATAC 59.639 50.000 0.00 0.00 0.00 1.47
1073 1080 2.434185 GACGCCATTGCTCCACGA 60.434 61.111 0.00 0.00 34.43 4.35
1101 1108 8.215736 TCTGTCCATATCTGAAATTCATCATGT 58.784 33.333 0.00 0.00 0.00 3.21
1115 1122 6.153170 CAGACTATGCTGATCTGTCCATATCT 59.847 42.308 1.27 4.78 38.14 1.98
1266 1273 0.821711 TTTTCTCAGGGCAACGGTGG 60.822 55.000 0.90 0.00 37.60 4.61
1268 1275 1.995376 ATTTTTCTCAGGGCAACGGT 58.005 45.000 0.00 0.00 37.60 4.83
1273 1280 6.122277 CCATAGACTAATTTTTCTCAGGGCA 58.878 40.000 0.00 0.00 0.00 5.36
1277 1284 7.721286 ATCGCCATAGACTAATTTTTCTCAG 57.279 36.000 0.00 0.00 0.00 3.35
1282 1289 8.281212 ACTGAAATCGCCATAGACTAATTTTT 57.719 30.769 0.00 0.00 0.00 1.94
1288 1295 5.241064 GGTAGACTGAAATCGCCATAGACTA 59.759 44.000 0.00 0.00 0.00 2.59
1293 1300 4.439057 GTTGGTAGACTGAAATCGCCATA 58.561 43.478 0.00 0.00 31.68 2.74
1310 1317 9.385515 TGATGTCATCAATCCAAGTAGGTTGGT 62.386 40.741 13.25 0.00 45.38 3.67
1349 1358 2.756760 GGACGTATCAGTGGGTTACTCA 59.243 50.000 0.00 0.00 37.60 3.41
1522 1531 4.261447 GCAGAATAGGTTTCCAACGTTTGT 60.261 41.667 0.00 0.00 0.00 2.83
1563 1572 2.430248 AGGTGGTTTCGTGGAGTTTT 57.570 45.000 0.00 0.00 0.00 2.43
1662 1678 2.027059 AGGGGGCCCAGGAGATAGA 61.027 63.158 26.86 0.00 38.92 1.98
1707 1723 6.395780 TCCAGGACAAAACCCTTCATATAA 57.604 37.500 0.00 0.00 0.00 0.98
1865 1882 1.134699 TGAGAGGATCGTTGGTGATGC 60.135 52.381 0.00 0.00 42.67 3.91
1887 1904 1.307866 GGAGATTGACCCCCTCCCA 60.308 63.158 0.00 0.00 40.35 4.37
1992 2009 3.007940 TCAACACTACTAGCAAGCCACAT 59.992 43.478 0.00 0.00 0.00 3.21
1998 2015 6.868622 AGGAGTAATCAACACTACTAGCAAG 58.131 40.000 0.00 0.00 35.34 4.01
2143 2160 1.826385 CAAGACTTCACCCATGTCCC 58.174 55.000 0.00 0.00 30.79 4.46
2191 2208 9.546428 ACATACATCTCATCAAAATATCGAACA 57.454 29.630 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.