Multiple sequence alignment - TraesCS7B01G419600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G419600 chr7B 100.000 4232 0 0 1 4232 688909600 688913831 0.000000e+00 7816.0
1 TraesCS7B01G419600 chr7B 93.589 2761 121 13 796 3509 689518689 689515938 0.000000e+00 4067.0
2 TraesCS7B01G419600 chr7B 81.567 1085 160 22 932 1997 688592174 688591111 0.000000e+00 859.0
3 TraesCS7B01G419600 chr7B 81.423 1012 174 8 989 1996 688553550 688552549 0.000000e+00 815.0
4 TraesCS7B01G419600 chr7B 79.324 977 151 26 2454 3404 688590655 688589704 4.610000e-179 638.0
5 TraesCS7B01G419600 chr7B 85.714 252 22 8 3505 3743 689515826 689515576 1.950000e-63 254.0
6 TraesCS7B01G419600 chr7B 80.328 305 43 11 2061 2361 688596660 688596369 9.220000e-52 215.0
7 TraesCS7B01G419600 chr7B 76.152 369 66 17 993 1353 640511591 640511945 1.560000e-39 174.0
8 TraesCS7B01G419600 chr7B 82.051 195 30 5 2230 2420 688552317 688552124 1.220000e-35 161.0
9 TraesCS7B01G419600 chr7B 87.970 133 13 3 657 787 637342811 637342942 2.040000e-33 154.0
10 TraesCS7B01G419600 chr7B 92.308 52 4 0 3840 3891 689515475 689515424 1.630000e-09 75.0
11 TraesCS7B01G419600 chr7D 95.909 2762 85 9 775 3509 605679927 605682687 0.000000e+00 4449.0
12 TraesCS7B01G419600 chr7D 79.150 1458 210 54 970 2367 605477996 605479419 0.000000e+00 922.0
13 TraesCS7B01G419600 chr7D 80.971 1030 169 16 972 1996 605538528 605539535 0.000000e+00 791.0
14 TraesCS7B01G419600 chr7D 92.821 195 9 4 3737 3927 605682812 605683005 1.160000e-70 278.0
15 TraesCS7B01G419600 chr7D 92.350 183 14 0 415 597 617058713 617058531 1.170000e-65 261.0
16 TraesCS7B01G419600 chr7D 100.000 28 0 0 916 943 605679993 605680020 8.000000e-03 52.8
17 TraesCS7B01G419600 chr7A 94.609 2764 106 13 775 3509 696975173 696977922 0.000000e+00 4239.0
18 TraesCS7B01G419600 chr7A 79.760 998 136 36 2443 3405 696946858 696945892 0.000000e+00 664.0
19 TraesCS7B01G419600 chr7A 79.580 999 136 38 2443 3405 696877396 696876430 0.000000e+00 652.0
20 TraesCS7B01G419600 chr7A 77.049 366 68 12 993 1353 669404091 669404445 3.340000e-46 196.0
21 TraesCS7B01G419600 chr7A 91.818 110 9 0 3504 3613 696978059 696978168 2.040000e-33 154.0
22 TraesCS7B01G419600 chr7A 81.955 133 23 1 3968 4099 691054496 691054364 1.240000e-20 111.0
23 TraesCS7B01G419600 chr7A 78.235 170 34 3 607 774 134494818 134494650 5.790000e-19 106.0
24 TraesCS7B01G419600 chr7A 100.000 30 0 0 1958 1987 696974127 696974156 5.910000e-04 56.5
25 TraesCS7B01G419600 chr2B 85.938 1472 156 29 982 2420 54327350 54328803 0.000000e+00 1524.0
26 TraesCS7B01G419600 chr2B 84.758 866 73 25 2567 3377 54329037 54329898 0.000000e+00 813.0
27 TraesCS7B01G419600 chr2B 85.071 422 55 5 1 414 25735540 25735961 1.410000e-114 424.0
28 TraesCS7B01G419600 chr2B 86.667 60 0 1 3805 3856 54330068 54330127 4.570000e-05 60.2
29 TraesCS7B01G419600 chr2D 87.196 1273 133 13 1159 2420 32653091 32654344 0.000000e+00 1421.0
30 TraesCS7B01G419600 chr2D 84.810 1027 81 30 2546 3505 32654550 32655568 0.000000e+00 963.0
31 TraesCS7B01G419600 chr2D 87.595 395 48 1 1 395 439980334 439980727 1.390000e-124 457.0
32 TraesCS7B01G419600 chr2D 89.247 186 18 2 588 772 439980736 439980920 9.150000e-57 231.0
33 TraesCS7B01G419600 chr2D 82.031 128 22 1 3976 4102 47678343 47678216 1.610000e-19 108.0
34 TraesCS7B01G419600 chr2D 90.769 65 2 3 3675 3737 32655817 32655879 2.710000e-12 84.2
35 TraesCS7B01G419600 chr2A 89.489 685 60 8 922 1597 35966004 35966685 0.000000e+00 856.0
36 TraesCS7B01G419600 chr2A 90.783 434 34 4 2939 3370 35967979 35968408 3.670000e-160 575.0
37 TraesCS7B01G419600 chr2A 85.122 531 50 14 1917 2420 35966687 35967215 2.260000e-142 516.0
38 TraesCS7B01G419600 chr2A 87.342 395 49 1 1 395 583272701 583273094 6.450000e-123 451.0
39 TraesCS7B01G419600 chr2A 81.527 406 71 4 1 404 28671962 28672365 8.770000e-87 331.0
40 TraesCS7B01G419600 chr2A 82.512 406 35 10 2546 2915 35967421 35967826 1.470000e-84 324.0
41 TraesCS7B01G419600 chr2A 88.824 170 17 2 608 775 28672544 28672713 1.540000e-49 207.0
42 TraesCS7B01G419600 chr2A 87.097 62 2 4 3685 3743 35968422 35968480 9.820000e-07 65.8
43 TraesCS7B01G419600 chr3B 86.408 412 55 1 1 411 450374610 450374199 2.320000e-122 449.0
44 TraesCS7B01G419600 chr3B 92.262 168 13 0 598 765 450374198 450374031 5.470000e-59 239.0
45 TraesCS7B01G419600 chr4D 83.738 412 67 0 1 412 417377647 417377236 1.430000e-104 390.0
46 TraesCS7B01G419600 chr4D 90.374 187 15 2 593 776 417377242 417377056 4.230000e-60 243.0
47 TraesCS7B01G419600 chr5B 82.222 405 66 3 1 402 704913139 704913540 1.130000e-90 344.0
48 TraesCS7B01G419600 chr5B 92.896 183 12 1 415 597 698642183 698642002 9.020000e-67 265.0
49 TraesCS7B01G419600 chr5B 88.950 181 19 1 595 774 704913548 704913728 5.510000e-54 222.0
50 TraesCS7B01G419600 chr5B 82.313 147 23 3 608 752 396395273 396395128 1.600000e-24 124.0
51 TraesCS7B01G419600 chr4B 92.896 183 12 1 415 597 85939382 85939201 9.020000e-67 265.0
52 TraesCS7B01G419600 chr6D 91.979 187 15 0 415 601 399222290 399222104 3.250000e-66 263.0
53 TraesCS7B01G419600 chr5D 91.979 187 15 0 415 601 149772396 149772582 3.250000e-66 263.0
54 TraesCS7B01G419600 chr5D 92.021 188 14 1 415 602 421386167 421386353 3.250000e-66 263.0
55 TraesCS7B01G419600 chr5D 89.573 211 16 5 400 608 446576058 446575852 3.250000e-66 263.0
56 TraesCS7B01G419600 chr5D 89.247 186 17 2 593 775 520435621 520435806 3.290000e-56 230.0
57 TraesCS7B01G419600 chrUn 92.778 180 13 0 415 594 175473805 175473984 1.170000e-65 261.0
58 TraesCS7B01G419600 chr1B 92.818 181 12 1 415 594 109870815 109870995 1.170000e-65 261.0
59 TraesCS7B01G419600 chr1A 79.692 325 46 12 2104 2417 586919268 586919583 2.560000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G419600 chr7B 688909600 688913831 4231 False 7816.000000 7816 100.000000 1 4232 1 chr7B.!!$F3 4231
1 TraesCS7B01G419600 chr7B 689515424 689518689 3265 True 1465.333333 4067 90.537000 796 3891 3 chr7B.!!$R4 3095
2 TraesCS7B01G419600 chr7B 688589704 688592174 2470 True 748.500000 859 80.445500 932 3404 2 chr7B.!!$R3 2472
3 TraesCS7B01G419600 chr7B 688552124 688553550 1426 True 488.000000 815 81.737000 989 2420 2 chr7B.!!$R2 1431
4 TraesCS7B01G419600 chr7D 605679927 605683005 3078 False 1593.266667 4449 96.243333 775 3927 3 chr7D.!!$F3 3152
5 TraesCS7B01G419600 chr7D 605477996 605479419 1423 False 922.000000 922 79.150000 970 2367 1 chr7D.!!$F1 1397
6 TraesCS7B01G419600 chr7D 605538528 605539535 1007 False 791.000000 791 80.971000 972 1996 1 chr7D.!!$F2 1024
7 TraesCS7B01G419600 chr7A 696974127 696978168 4041 False 1483.166667 4239 95.475667 775 3613 3 chr7A.!!$F2 2838
8 TraesCS7B01G419600 chr7A 696945892 696946858 966 True 664.000000 664 79.760000 2443 3405 1 chr7A.!!$R4 962
9 TraesCS7B01G419600 chr7A 696876430 696877396 966 True 652.000000 652 79.580000 2443 3405 1 chr7A.!!$R3 962
10 TraesCS7B01G419600 chr2B 54327350 54330127 2777 False 799.066667 1524 85.787667 982 3856 3 chr2B.!!$F2 2874
11 TraesCS7B01G419600 chr2D 32653091 32655879 2788 False 822.733333 1421 87.591667 1159 3737 3 chr2D.!!$F1 2578
12 TraesCS7B01G419600 chr2D 439980334 439980920 586 False 344.000000 457 88.421000 1 772 2 chr2D.!!$F2 771
13 TraesCS7B01G419600 chr2A 35966004 35968480 2476 False 467.360000 856 87.000600 922 3743 5 chr2A.!!$F3 2821
14 TraesCS7B01G419600 chr2A 28671962 28672713 751 False 269.000000 331 85.175500 1 775 2 chr2A.!!$F2 774
15 TraesCS7B01G419600 chr3B 450374031 450374610 579 True 344.000000 449 89.335000 1 765 2 chr3B.!!$R1 764
16 TraesCS7B01G419600 chr4D 417377056 417377647 591 True 316.500000 390 87.056000 1 776 2 chr4D.!!$R1 775
17 TraesCS7B01G419600 chr5B 704913139 704913728 589 False 283.000000 344 85.586000 1 774 2 chr5B.!!$F1 773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.105760 ACACCCCATCAAGCAAACCA 60.106 50.0 0.00 0.00 0.0 3.67 F
434 436 0.608130 GGATGTTTGGTTTCAGGGGC 59.392 55.0 0.00 0.00 0.0 5.80 F
1522 1844 0.033503 TACCCGGCTCACAGATCTGA 60.034 55.0 29.27 7.12 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1522 1844 2.471255 GCTGTATGCGAACCAGCTT 58.529 52.632 9.21 0.0 46.23 3.74 R
1899 2226 5.163405 TGCAGAAACTGTATCTCCTCCATAC 60.163 44.000 0.00 0.0 33.43 2.39 R
3389 4206 0.668706 CAGCAGTTCAGTCTCACGGG 60.669 60.000 0.00 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 0.105760 ACACCCCATCAAGCAAACCA 60.106 50.000 0.00 0.00 0.00 3.67
164 165 2.503356 GGAAGAAGAGGAGGATCTGCAA 59.497 50.000 0.00 0.00 33.73 4.08
294 295 3.567478 AGCACTTGTTGAAGACCTTCT 57.433 42.857 10.67 0.00 40.14 2.85
377 379 2.219875 AGAGGAGCATATGGGGCGG 61.220 63.158 4.56 0.00 36.08 6.13
417 419 7.921041 ATAGTCATTTGTTATCTCTCAGGGA 57.079 36.000 0.00 0.00 0.00 4.20
419 421 6.590068 AGTCATTTGTTATCTCTCAGGGATG 58.410 40.000 0.00 0.00 0.00 3.51
423 425 7.337689 TCATTTGTTATCTCTCAGGGATGTTTG 59.662 37.037 0.00 0.00 0.00 2.93
424 426 5.102953 TGTTATCTCTCAGGGATGTTTGG 57.897 43.478 0.00 0.00 0.00 3.28
427 429 4.664688 ATCTCTCAGGGATGTTTGGTTT 57.335 40.909 0.00 0.00 0.00 3.27
428 430 4.021102 TCTCTCAGGGATGTTTGGTTTC 57.979 45.455 0.00 0.00 0.00 2.78
429 431 3.394274 TCTCTCAGGGATGTTTGGTTTCA 59.606 43.478 0.00 0.00 0.00 2.69
433 435 1.203174 AGGGATGTTTGGTTTCAGGGG 60.203 52.381 0.00 0.00 0.00 4.79
434 436 0.608130 GGATGTTTGGTTTCAGGGGC 59.392 55.000 0.00 0.00 0.00 5.80
435 437 1.632589 GATGTTTGGTTTCAGGGGCT 58.367 50.000 0.00 0.00 0.00 5.19
436 438 1.970640 GATGTTTGGTTTCAGGGGCTT 59.029 47.619 0.00 0.00 0.00 4.35
478 480 5.669164 AAAGTTCCTAGCAAACCAAACAA 57.331 34.783 3.39 0.00 0.00 2.83
479 481 4.918810 AGTTCCTAGCAAACCAAACAAG 57.081 40.909 3.39 0.00 0.00 3.16
482 484 1.618343 CCTAGCAAACCAAACAAGGGG 59.382 52.381 0.00 0.00 0.00 4.79
483 485 1.618343 CTAGCAAACCAAACAAGGGGG 59.382 52.381 0.00 0.00 0.00 5.40
523 525 8.628882 TTTTTGCTAAAAGTCTTTAGAAGCAC 57.371 30.769 20.88 2.24 44.70 4.40
524 526 5.941948 TGCTAAAAGTCTTTAGAAGCACC 57.058 39.130 18.74 1.33 44.70 5.01
525 527 5.621193 TGCTAAAAGTCTTTAGAAGCACCT 58.379 37.500 18.74 0.00 44.70 4.00
526 528 5.701290 TGCTAAAAGTCTTTAGAAGCACCTC 59.299 40.000 18.74 0.83 44.70 3.85
528 530 4.984146 AAAGTCTTTAGAAGCACCTCCT 57.016 40.909 0.00 0.00 0.00 3.69
531 533 3.904339 AGTCTTTAGAAGCACCTCCTTGA 59.096 43.478 0.00 0.00 0.00 3.02
532 534 4.020662 AGTCTTTAGAAGCACCTCCTTGAG 60.021 45.833 0.00 0.00 0.00 3.02
533 535 4.021016 GTCTTTAGAAGCACCTCCTTGAGA 60.021 45.833 0.00 0.00 0.00 3.27
535 537 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
536 538 3.176924 AGAAGCACCTCCTTGAGAGTA 57.823 47.619 0.00 0.00 41.47 2.59
538 540 4.100373 AGAAGCACCTCCTTGAGAGTATT 58.900 43.478 0.00 0.00 41.47 1.89
541 543 5.248380 AGCACCTCCTTGAGAGTATTTTT 57.752 39.130 0.00 0.00 41.47 1.94
542 544 5.249420 AGCACCTCCTTGAGAGTATTTTTC 58.751 41.667 0.00 0.00 41.47 2.29
544 546 5.473504 GCACCTCCTTGAGAGTATTTTTCAA 59.526 40.000 0.00 0.00 41.47 2.69
545 547 6.016276 GCACCTCCTTGAGAGTATTTTTCAAA 60.016 38.462 0.00 0.00 41.47 2.69
546 548 7.470009 GCACCTCCTTGAGAGTATTTTTCAAAA 60.470 37.037 0.00 0.00 41.47 2.44
547 549 8.413229 CACCTCCTTGAGAGTATTTTTCAAAAA 58.587 33.333 0.00 0.00 41.47 1.94
590 592 6.342338 GTCCTAAGACTAGAGAACCAAACA 57.658 41.667 0.00 0.00 40.10 2.83
591 593 6.157904 GTCCTAAGACTAGAGAACCAAACAC 58.842 44.000 0.00 0.00 40.10 3.32
592 594 5.245526 TCCTAAGACTAGAGAACCAAACACC 59.754 44.000 0.00 0.00 0.00 4.16
623 626 3.632145 TGCACCTTTTCTTTTGAGTCTCC 59.368 43.478 0.00 0.00 0.00 3.71
626 629 4.884164 CACCTTTTCTTTTGAGTCTCCTGT 59.116 41.667 0.00 0.00 0.00 4.00
681 684 2.043115 TGCTTTCTCTAGAGGTCCAGGA 59.957 50.000 19.67 8.80 0.00 3.86
708 711 1.112315 TTTGGTTTGGCACTCCGCAT 61.112 50.000 0.00 0.00 45.17 4.73
730 733 1.825474 ACCTGAGACGTATCCCACTTG 59.175 52.381 7.88 0.00 0.00 3.16
851 1129 4.200283 GCTCTCCGTCCAGCTCCG 62.200 72.222 0.00 0.00 32.48 4.63
930 1224 2.899505 GAGTCCAGCTCCAGCCTC 59.100 66.667 0.00 0.00 43.38 4.70
1068 1368 4.309950 GTCGGCGTTGGAGGTGGT 62.310 66.667 6.85 0.00 0.00 4.16
1119 1434 2.122768 GTCCTCATCCACATCCTCCTT 58.877 52.381 0.00 0.00 0.00 3.36
1212 1528 2.378634 CCCGGAGCTCCATTTCCCT 61.379 63.158 31.67 0.00 35.14 4.20
1522 1844 0.033503 TACCCGGCTCACAGATCTGA 60.034 55.000 29.27 7.12 0.00 3.27
1897 2224 3.077359 CTGACCACCAATCCTCTTTGTC 58.923 50.000 0.00 0.00 0.00 3.18
1899 2226 3.077359 GACCACCAATCCTCTTTGTCTG 58.923 50.000 0.00 0.00 0.00 3.51
2440 2854 7.726216 AGTTTAAAAGAAAATAGGCAGCAAGT 58.274 30.769 0.00 0.00 0.00 3.16
3108 3912 2.839486 TGCTAGAAAGGGTGACAGTG 57.161 50.000 0.00 0.00 0.00 3.66
3279 4094 2.078849 TGTCAGTTCAGTATGGCGTG 57.921 50.000 0.00 0.00 36.16 5.34
3301 4116 4.699735 TGCTTTTGTGAGACTGAACTTTGA 59.300 37.500 0.00 0.00 0.00 2.69
3311 4128 7.852945 GTGAGACTGAACTTTGATAACTTGTTG 59.147 37.037 0.00 0.00 0.00 3.33
3416 4234 2.965831 AGACTGAACTGCTGTAACCTCA 59.034 45.455 0.00 0.00 0.00 3.86
3456 4274 7.739498 TGGAGACTTGGTTTTAGTATTTGTC 57.261 36.000 0.00 0.00 0.00 3.18
3457 4275 6.425721 TGGAGACTTGGTTTTAGTATTTGTCG 59.574 38.462 0.00 0.00 0.00 4.35
3477 4295 4.097589 GTCGGGCTCAAGTGTAGTAGTAAT 59.902 45.833 0.00 0.00 0.00 1.89
3505 4323 5.680619 TCAACTCTAGAAGCTTGTTTCCAA 58.319 37.500 2.10 0.00 0.00 3.53
3521 4506 1.094785 CCAAACTTCGAATGGCCGAT 58.905 50.000 0.00 0.00 38.45 4.18
3574 4559 7.261325 CGTAAGAATCAGATTTGAGGAGAGAA 58.739 38.462 0.00 0.00 36.51 2.87
3613 4598 0.732196 GCGCGAATTGGTTGCATGAA 60.732 50.000 12.10 0.00 0.00 2.57
3618 4603 3.928375 GCGAATTGGTTGCATGAATTCTT 59.072 39.130 17.04 0.00 35.03 2.52
3623 4608 4.274602 TGGTTGCATGAATTCTTTGCAT 57.725 36.364 26.41 4.51 45.04 3.96
3624 4609 4.643463 TGGTTGCATGAATTCTTTGCATT 58.357 34.783 26.41 0.00 45.04 3.56
3632 4617 8.252417 TGCATGAATTCTTTGCATTTATGTACT 58.748 29.630 23.86 0.00 41.18 2.73
3633 4618 9.090692 GCATGAATTCTTTGCATTTATGTACTT 57.909 29.630 21.55 0.00 36.40 2.24
3635 4620 8.894409 TGAATTCTTTGCATTTATGTACTTCG 57.106 30.769 7.05 0.00 0.00 3.79
3636 4621 8.726068 TGAATTCTTTGCATTTATGTACTTCGA 58.274 29.630 7.05 0.00 0.00 3.71
3637 4622 9.554724 GAATTCTTTGCATTTATGTACTTCGAA 57.445 29.630 0.00 0.00 0.00 3.71
3641 4626 7.967854 TCTTTGCATTTATGTACTTCGAATTGG 59.032 33.333 0.00 0.00 0.00 3.16
3643 4628 7.851387 TGCATTTATGTACTTCGAATTGGTA 57.149 32.000 0.00 0.00 0.00 3.25
3644 4629 8.270080 TGCATTTATGTACTTCGAATTGGTAA 57.730 30.769 0.00 0.00 0.00 2.85
3645 4630 8.178964 TGCATTTATGTACTTCGAATTGGTAAC 58.821 33.333 0.00 0.00 0.00 2.50
3652 4646 6.762187 TGTACTTCGAATTGGTAACTTGTTCA 59.238 34.615 0.00 0.00 37.61 3.18
3694 4690 2.693069 CAGAAAACGGCAGTCTCATCT 58.307 47.619 0.00 0.00 0.00 2.90
3733 4734 3.864789 TTTTCAGTTCTTCCCTCTGCT 57.135 42.857 0.00 0.00 0.00 4.24
3751 4768 1.956477 GCTGTGTGTGGGAAAGATGTT 59.044 47.619 0.00 0.00 0.00 2.71
3757 4774 4.881850 GTGTGTGGGAAAGATGTTATAGGG 59.118 45.833 0.00 0.00 0.00 3.53
3893 4933 5.841957 AATGAAAATCTATTTCAGCCGCT 57.158 34.783 9.22 0.00 41.13 5.52
3901 4941 4.621991 TCTATTTCAGCCGCTCAAGTATC 58.378 43.478 0.00 0.00 0.00 2.24
3916 4956 7.063426 CGCTCAAGTATCAGAAACAAGTTATGA 59.937 37.037 4.04 4.04 0.00 2.15
3922 4962 8.263640 AGTATCAGAAACAAGTTATGATCTGCT 58.736 33.333 13.58 5.76 41.76 4.24
3923 4963 9.534565 GTATCAGAAACAAGTTATGATCTGCTA 57.465 33.333 13.58 5.03 41.76 3.49
3926 4966 9.453572 TCAGAAACAAGTTATGATCTGCTATTT 57.546 29.630 7.25 0.00 41.76 1.40
3935 4975 9.692325 AGTTATGATCTGCTATTTTTCTTTCCT 57.308 29.630 0.00 0.00 0.00 3.36
3936 4976 9.943163 GTTATGATCTGCTATTTTTCTTTCCTC 57.057 33.333 0.00 0.00 0.00 3.71
3937 4977 9.911788 TTATGATCTGCTATTTTTCTTTCCTCT 57.088 29.630 0.00 0.00 0.00 3.69
3938 4978 7.856145 TGATCTGCTATTTTTCTTTCCTCTC 57.144 36.000 0.00 0.00 0.00 3.20
3939 4979 7.628234 TGATCTGCTATTTTTCTTTCCTCTCT 58.372 34.615 0.00 0.00 0.00 3.10
3940 4980 7.768120 TGATCTGCTATTTTTCTTTCCTCTCTC 59.232 37.037 0.00 0.00 0.00 3.20
3941 4981 7.251321 TCTGCTATTTTTCTTTCCTCTCTCT 57.749 36.000 0.00 0.00 0.00 3.10
3942 4982 7.327214 TCTGCTATTTTTCTTTCCTCTCTCTC 58.673 38.462 0.00 0.00 0.00 3.20
3943 4983 7.009179 TGCTATTTTTCTTTCCTCTCTCTCA 57.991 36.000 0.00 0.00 0.00 3.27
3944 4984 7.453393 TGCTATTTTTCTTTCCTCTCTCTCAA 58.547 34.615 0.00 0.00 0.00 3.02
3945 4985 7.605691 TGCTATTTTTCTTTCCTCTCTCTCAAG 59.394 37.037 0.00 0.00 0.00 3.02
3946 4986 7.065683 GCTATTTTTCTTTCCTCTCTCTCAAGG 59.934 40.741 0.00 0.00 0.00 3.61
3947 4987 3.971245 TTCTTTCCTCTCTCTCAAGGC 57.029 47.619 0.00 0.00 32.37 4.35
3948 4988 1.821753 TCTTTCCTCTCTCTCAAGGCG 59.178 52.381 0.00 0.00 32.37 5.52
3949 4989 1.821753 CTTTCCTCTCTCTCAAGGCGA 59.178 52.381 0.00 0.00 32.37 5.54
3950 4990 2.151502 TTCCTCTCTCTCAAGGCGAT 57.848 50.000 0.00 0.00 32.37 4.58
3951 4991 3.298686 TTCCTCTCTCTCAAGGCGATA 57.701 47.619 0.00 0.00 32.37 2.92
3952 4992 3.298686 TCCTCTCTCTCAAGGCGATAA 57.701 47.619 0.00 0.00 32.37 1.75
3953 4993 3.218453 TCCTCTCTCTCAAGGCGATAAG 58.782 50.000 0.00 0.00 32.37 1.73
3954 4994 2.295909 CCTCTCTCTCAAGGCGATAAGG 59.704 54.545 0.00 0.00 0.00 2.69
3955 4995 2.295909 CTCTCTCTCAAGGCGATAAGGG 59.704 54.545 0.00 0.00 0.00 3.95
3956 4996 2.091830 TCTCTCTCAAGGCGATAAGGGA 60.092 50.000 0.00 0.00 0.00 4.20
3957 4997 2.695666 CTCTCTCAAGGCGATAAGGGAA 59.304 50.000 0.00 0.00 0.00 3.97
3958 4998 3.104512 TCTCTCAAGGCGATAAGGGAAA 58.895 45.455 0.00 0.00 0.00 3.13
3959 4999 3.133003 TCTCTCAAGGCGATAAGGGAAAG 59.867 47.826 0.00 0.00 0.00 2.62
3960 5000 1.943340 CTCAAGGCGATAAGGGAAAGC 59.057 52.381 0.00 0.00 0.00 3.51
3961 5001 1.280710 TCAAGGCGATAAGGGAAAGCA 59.719 47.619 0.00 0.00 0.00 3.91
3962 5002 2.092429 TCAAGGCGATAAGGGAAAGCAT 60.092 45.455 0.00 0.00 0.00 3.79
3963 5003 2.689983 CAAGGCGATAAGGGAAAGCATT 59.310 45.455 0.00 0.00 31.82 3.56
3964 5004 2.576615 AGGCGATAAGGGAAAGCATTC 58.423 47.619 0.00 0.00 34.66 2.67
3974 5014 2.969628 GAAAGCATTCCTCCTCTCGA 57.030 50.000 0.00 0.00 0.00 4.04
3975 5015 3.467374 GAAAGCATTCCTCCTCTCGAT 57.533 47.619 0.00 0.00 0.00 3.59
3976 5016 3.802866 GAAAGCATTCCTCCTCTCGATT 58.197 45.455 0.00 0.00 0.00 3.34
3977 5017 3.467374 AAGCATTCCTCCTCTCGATTC 57.533 47.619 0.00 0.00 0.00 2.52
3978 5018 1.339610 AGCATTCCTCCTCTCGATTCG 59.660 52.381 0.00 0.00 0.00 3.34
3979 5019 1.777101 CATTCCTCCTCTCGATTCGC 58.223 55.000 0.00 0.00 0.00 4.70
3980 5020 0.676736 ATTCCTCCTCTCGATTCGCC 59.323 55.000 0.00 0.00 0.00 5.54
3981 5021 0.395862 TTCCTCCTCTCGATTCGCCT 60.396 55.000 0.00 0.00 0.00 5.52
3982 5022 0.820074 TCCTCCTCTCGATTCGCCTC 60.820 60.000 0.00 0.00 0.00 4.70
3983 5023 1.657556 CTCCTCTCGATTCGCCTCC 59.342 63.158 0.00 0.00 0.00 4.30
3984 5024 1.801309 CTCCTCTCGATTCGCCTCCC 61.801 65.000 0.00 0.00 0.00 4.30
3985 5025 2.731374 CTCTCGATTCGCCTCCCC 59.269 66.667 0.00 0.00 0.00 4.81
3986 5026 1.830408 CTCTCGATTCGCCTCCCCT 60.830 63.158 0.00 0.00 0.00 4.79
3987 5027 1.801309 CTCTCGATTCGCCTCCCCTC 61.801 65.000 0.00 0.00 0.00 4.30
3988 5028 2.838225 TCGATTCGCCTCCCCTCC 60.838 66.667 0.00 0.00 0.00 4.30
3989 5029 4.286320 CGATTCGCCTCCCCTCCG 62.286 72.222 0.00 0.00 0.00 4.63
3990 5030 4.610714 GATTCGCCTCCCCTCCGC 62.611 72.222 0.00 0.00 0.00 5.54
4025 5065 4.066139 GGTGGCAGGGAGGGCATT 62.066 66.667 0.00 0.00 45.62 3.56
4026 5066 2.440980 GTGGCAGGGAGGGCATTC 60.441 66.667 0.00 0.00 45.62 2.67
4027 5067 3.743017 TGGCAGGGAGGGCATTCC 61.743 66.667 0.00 0.00 38.55 3.01
4037 5077 3.830192 GGCATTCCTGGCGCCTTG 61.830 66.667 29.70 19.84 42.78 3.61
4038 5078 3.830192 GCATTCCTGGCGCCTTGG 61.830 66.667 29.70 27.60 0.00 3.61
4039 5079 2.361610 CATTCCTGGCGCCTTGGT 60.362 61.111 29.70 11.81 0.00 3.67
4040 5080 1.978617 CATTCCTGGCGCCTTGGTT 60.979 57.895 29.70 17.32 0.00 3.67
4041 5081 1.228862 ATTCCTGGCGCCTTGGTTT 60.229 52.632 29.70 17.00 0.00 3.27
4042 5082 1.250840 ATTCCTGGCGCCTTGGTTTC 61.251 55.000 29.70 0.00 0.00 2.78
4043 5083 3.737172 CCTGGCGCCTTGGTTTCG 61.737 66.667 29.70 5.38 0.00 3.46
4044 5084 3.737172 CTGGCGCCTTGGTTTCGG 61.737 66.667 29.70 0.00 0.00 4.30
4045 5085 4.572571 TGGCGCCTTGGTTTCGGT 62.573 61.111 29.70 0.00 0.00 4.69
4046 5086 3.292159 GGCGCCTTGGTTTCGGTT 61.292 61.111 22.15 0.00 0.00 4.44
4047 5087 1.967494 GGCGCCTTGGTTTCGGTTA 60.967 57.895 22.15 0.00 0.00 2.85
4048 5088 1.500396 GCGCCTTGGTTTCGGTTAG 59.500 57.895 0.00 0.00 0.00 2.34
4049 5089 1.232621 GCGCCTTGGTTTCGGTTAGT 61.233 55.000 0.00 0.00 0.00 2.24
4050 5090 1.940752 GCGCCTTGGTTTCGGTTAGTA 60.941 52.381 0.00 0.00 0.00 1.82
4051 5091 1.997606 CGCCTTGGTTTCGGTTAGTAG 59.002 52.381 0.00 0.00 0.00 2.57
4052 5092 2.353011 CGCCTTGGTTTCGGTTAGTAGA 60.353 50.000 0.00 0.00 0.00 2.59
4053 5093 3.677976 CGCCTTGGTTTCGGTTAGTAGAT 60.678 47.826 0.00 0.00 0.00 1.98
4054 5094 4.440525 CGCCTTGGTTTCGGTTAGTAGATA 60.441 45.833 0.00 0.00 0.00 1.98
4055 5095 5.608449 GCCTTGGTTTCGGTTAGTAGATAT 58.392 41.667 0.00 0.00 0.00 1.63
4056 5096 5.465724 GCCTTGGTTTCGGTTAGTAGATATG 59.534 44.000 0.00 0.00 0.00 1.78
4057 5097 6.579865 CCTTGGTTTCGGTTAGTAGATATGT 58.420 40.000 0.00 0.00 0.00 2.29
4058 5098 7.685155 GCCTTGGTTTCGGTTAGTAGATATGTA 60.685 40.741 0.00 0.00 0.00 2.29
4059 5099 7.866393 CCTTGGTTTCGGTTAGTAGATATGTAG 59.134 40.741 0.00 0.00 0.00 2.74
4060 5100 7.281040 TGGTTTCGGTTAGTAGATATGTAGG 57.719 40.000 0.00 0.00 0.00 3.18
4061 5101 6.266103 TGGTTTCGGTTAGTAGATATGTAGGG 59.734 42.308 0.00 0.00 0.00 3.53
4062 5102 6.266330 GGTTTCGGTTAGTAGATATGTAGGGT 59.734 42.308 0.00 0.00 0.00 4.34
4063 5103 7.201947 GGTTTCGGTTAGTAGATATGTAGGGTT 60.202 40.741 0.00 0.00 0.00 4.11
4064 5104 7.902920 TTCGGTTAGTAGATATGTAGGGTTT 57.097 36.000 0.00 0.00 0.00 3.27
4065 5105 8.995027 TTCGGTTAGTAGATATGTAGGGTTTA 57.005 34.615 0.00 0.00 0.00 2.01
4066 5106 8.627208 TCGGTTAGTAGATATGTAGGGTTTAG 57.373 38.462 0.00 0.00 0.00 1.85
4067 5107 8.220559 TCGGTTAGTAGATATGTAGGGTTTAGT 58.779 37.037 0.00 0.00 0.00 2.24
4068 5108 8.510505 CGGTTAGTAGATATGTAGGGTTTAGTC 58.489 40.741 0.00 0.00 0.00 2.59
4069 5109 9.359653 GGTTAGTAGATATGTAGGGTTTAGTCA 57.640 37.037 0.00 0.00 0.00 3.41
4073 5113 9.656323 AGTAGATATGTAGGGTTTAGTCATTGA 57.344 33.333 0.00 0.00 0.00 2.57
4076 5116 9.784531 AGATATGTAGGGTTTAGTCATTGAATG 57.215 33.333 0.00 0.00 0.00 2.67
4077 5117 8.924511 ATATGTAGGGTTTAGTCATTGAATGG 57.075 34.615 5.20 0.00 0.00 3.16
4078 5118 5.505780 TGTAGGGTTTAGTCATTGAATGGG 58.494 41.667 5.20 0.00 0.00 4.00
4079 5119 3.365472 AGGGTTTAGTCATTGAATGGGC 58.635 45.455 5.20 0.00 0.00 5.36
4080 5120 2.099098 GGGTTTAGTCATTGAATGGGCG 59.901 50.000 5.20 0.00 0.00 6.13
4081 5121 2.099098 GGTTTAGTCATTGAATGGGCGG 59.901 50.000 5.20 0.00 0.00 6.13
4082 5122 2.752903 GTTTAGTCATTGAATGGGCGGT 59.247 45.455 5.20 0.00 0.00 5.68
4083 5123 2.036958 TAGTCATTGAATGGGCGGTG 57.963 50.000 5.20 0.00 0.00 4.94
4084 5124 1.139520 GTCATTGAATGGGCGGTGC 59.860 57.895 5.20 0.00 0.00 5.01
4085 5125 1.001020 TCATTGAATGGGCGGTGCT 60.001 52.632 5.20 0.00 0.00 4.40
4086 5126 0.611618 TCATTGAATGGGCGGTGCTT 60.612 50.000 5.20 0.00 0.00 3.91
4087 5127 0.458889 CATTGAATGGGCGGTGCTTG 60.459 55.000 0.00 0.00 0.00 4.01
4088 5128 1.606885 ATTGAATGGGCGGTGCTTGG 61.607 55.000 0.00 0.00 0.00 3.61
4089 5129 2.361104 GAATGGGCGGTGCTTGGA 60.361 61.111 0.00 0.00 0.00 3.53
4090 5130 2.676471 AATGGGCGGTGCTTGGAC 60.676 61.111 0.00 0.00 0.00 4.02
4094 5134 4.778143 GGCGGTGCTTGGACGGAT 62.778 66.667 4.24 0.00 0.00 4.18
4095 5135 2.185867 GCGGTGCTTGGACGGATA 59.814 61.111 4.24 0.00 0.00 2.59
4096 5136 1.883084 GCGGTGCTTGGACGGATAG 60.883 63.158 4.24 0.00 0.00 2.08
4097 5137 1.883084 CGGTGCTTGGACGGATAGC 60.883 63.158 0.00 0.00 35.50 2.97
4098 5138 1.883084 GGTGCTTGGACGGATAGCG 60.883 63.158 0.00 0.00 37.73 4.26
4099 5139 1.883084 GTGCTTGGACGGATAGCGG 60.883 63.158 0.00 0.00 37.73 5.52
4100 5140 2.967615 GCTTGGACGGATAGCGGC 60.968 66.667 0.00 0.00 0.00 6.53
4101 5141 2.658593 CTTGGACGGATAGCGGCG 60.659 66.667 0.51 0.51 0.00 6.46
4102 5142 4.215742 TTGGACGGATAGCGGCGG 62.216 66.667 9.78 0.00 0.00 6.13
4114 5154 4.918201 CGGCGGGCTCCAATCCTC 62.918 72.222 0.00 0.00 0.00 3.71
4115 5155 3.483869 GGCGGGCTCCAATCCTCT 61.484 66.667 0.00 0.00 0.00 3.69
4116 5156 2.203126 GCGGGCTCCAATCCTCTG 60.203 66.667 0.00 0.00 0.00 3.35
4117 5157 2.203126 CGGGCTCCAATCCTCTGC 60.203 66.667 0.00 0.00 0.00 4.26
4118 5158 3.001514 GGGCTCCAATCCTCTGCA 58.998 61.111 0.00 0.00 0.00 4.41
4119 5159 1.304282 GGGCTCCAATCCTCTGCAA 59.696 57.895 0.00 0.00 0.00 4.08
4120 5160 0.750911 GGGCTCCAATCCTCTGCAAG 60.751 60.000 0.00 0.00 0.00 4.01
4121 5161 0.034670 GGCTCCAATCCTCTGCAAGT 60.035 55.000 0.00 0.00 33.76 3.16
4122 5162 1.615384 GGCTCCAATCCTCTGCAAGTT 60.615 52.381 0.00 0.00 33.76 2.66
4123 5163 1.742268 GCTCCAATCCTCTGCAAGTTC 59.258 52.381 0.00 0.00 33.76 3.01
4124 5164 2.617532 GCTCCAATCCTCTGCAAGTTCT 60.618 50.000 0.00 0.00 33.76 3.01
4125 5165 3.683802 CTCCAATCCTCTGCAAGTTCTT 58.316 45.455 0.00 0.00 33.76 2.52
4126 5166 4.836825 CTCCAATCCTCTGCAAGTTCTTA 58.163 43.478 0.00 0.00 33.76 2.10
4127 5167 5.241403 TCCAATCCTCTGCAAGTTCTTAA 57.759 39.130 0.00 0.00 33.76 1.85
4128 5168 5.248640 TCCAATCCTCTGCAAGTTCTTAAG 58.751 41.667 0.00 0.00 33.76 1.85
4129 5169 5.013079 TCCAATCCTCTGCAAGTTCTTAAGA 59.987 40.000 0.00 0.00 33.76 2.10
4130 5170 5.353678 CCAATCCTCTGCAAGTTCTTAAGAG 59.646 44.000 5.12 13.17 35.25 2.85
4132 5172 3.604582 CCTCTGCAAGTTCTTAAGAGGG 58.395 50.000 22.56 12.34 46.88 4.30
4133 5173 3.604582 CTCTGCAAGTTCTTAAGAGGGG 58.395 50.000 5.12 0.00 32.47 4.79
4134 5174 2.087646 CTGCAAGTTCTTAAGAGGGGC 58.912 52.381 5.12 8.98 0.00 5.80
4135 5175 1.271926 TGCAAGTTCTTAAGAGGGGCC 60.272 52.381 5.12 0.00 0.00 5.80
4136 5176 1.739067 CAAGTTCTTAAGAGGGGCCG 58.261 55.000 5.12 0.00 0.00 6.13
4137 5177 0.035343 AAGTTCTTAAGAGGGGCCGC 60.035 55.000 12.88 12.88 0.00 6.53
4138 5178 1.814169 GTTCTTAAGAGGGGCCGCG 60.814 63.158 15.00 0.00 0.00 6.46
4139 5179 1.985662 TTCTTAAGAGGGGCCGCGA 60.986 57.895 15.00 1.06 0.00 5.87
4140 5180 1.546589 TTCTTAAGAGGGGCCGCGAA 61.547 55.000 15.00 7.78 0.00 4.70
4141 5181 1.521681 CTTAAGAGGGGCCGCGAAG 60.522 63.158 15.00 12.38 0.00 3.79
4142 5182 2.240162 CTTAAGAGGGGCCGCGAAGT 62.240 60.000 15.00 3.92 0.00 3.01
4143 5183 2.515996 TTAAGAGGGGCCGCGAAGTG 62.516 60.000 15.00 0.00 38.04 3.16
4147 5187 4.770874 GGGGCCGCGAAGTGCTTA 62.771 66.667 8.23 0.00 43.27 3.09
4148 5188 2.744709 GGGCCGCGAAGTGCTTAA 60.745 61.111 8.23 0.00 43.27 1.85
4149 5189 2.750888 GGGCCGCGAAGTGCTTAAG 61.751 63.158 8.23 0.00 43.27 1.85
4150 5190 1.740296 GGCCGCGAAGTGCTTAAGA 60.740 57.895 8.23 0.00 43.27 2.10
4151 5191 1.696832 GGCCGCGAAGTGCTTAAGAG 61.697 60.000 8.23 0.00 43.27 2.85
4173 5213 7.849804 GAGCATCTCCAATACTTCACTAAAA 57.150 36.000 0.00 0.00 0.00 1.52
4174 5214 8.268850 GAGCATCTCCAATACTTCACTAAAAA 57.731 34.615 0.00 0.00 0.00 1.94
4193 5233 2.209690 AAACTCCCCCAATAACCACG 57.790 50.000 0.00 0.00 0.00 4.94
4194 5234 1.069775 AACTCCCCCAATAACCACGT 58.930 50.000 0.00 0.00 0.00 4.49
4195 5235 1.955451 ACTCCCCCAATAACCACGTA 58.045 50.000 0.00 0.00 0.00 3.57
4196 5236 2.484602 ACTCCCCCAATAACCACGTAT 58.515 47.619 0.00 0.00 0.00 3.06
4197 5237 2.848071 ACTCCCCCAATAACCACGTATT 59.152 45.455 0.00 0.00 0.00 1.89
4198 5238 3.211045 CTCCCCCAATAACCACGTATTG 58.789 50.000 2.40 2.40 39.96 1.90
4206 5246 2.192175 CCACGTATTGGGGCTCCC 59.808 66.667 0.00 0.72 45.71 4.30
4217 5257 2.231716 GGGGCTCCCAAATAACACTT 57.768 50.000 7.34 0.00 44.65 3.16
4218 5258 2.536066 GGGGCTCCCAAATAACACTTT 58.464 47.619 7.34 0.00 44.65 2.66
4219 5259 2.903784 GGGGCTCCCAAATAACACTTTT 59.096 45.455 7.34 0.00 44.65 2.27
4220 5260 3.326588 GGGGCTCCCAAATAACACTTTTT 59.673 43.478 7.34 0.00 44.65 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.742053 CGGTTTGACGTTGATCAAGGAT 59.258 45.455 29.52 16.27 39.68 3.24
294 295 7.011950 CGGATGCTACAACAAACTATTGGATAA 59.988 37.037 0.00 0.00 41.01 1.75
411 413 2.490718 CCCTGAAACCAAACATCCCTGA 60.491 50.000 0.00 0.00 0.00 3.86
415 417 0.608130 GCCCCTGAAACCAAACATCC 59.392 55.000 0.00 0.00 0.00 3.51
417 419 2.101640 AAGCCCCTGAAACCAAACAT 57.898 45.000 0.00 0.00 0.00 2.71
419 421 3.275617 AAAAAGCCCCTGAAACCAAAC 57.724 42.857 0.00 0.00 0.00 2.93
454 456 6.043854 TGTTTGGTTTGCTAGGAACTTTTT 57.956 33.333 0.00 0.00 41.75 1.94
456 458 5.395214 CCTTGTTTGGTTTGCTAGGAACTTT 60.395 40.000 0.00 0.00 41.75 2.66
457 459 4.099419 CCTTGTTTGGTTTGCTAGGAACTT 59.901 41.667 0.00 0.00 41.75 2.66
458 460 3.636764 CCTTGTTTGGTTTGCTAGGAACT 59.363 43.478 0.00 0.00 46.37 3.01
459 461 3.243737 CCCTTGTTTGGTTTGCTAGGAAC 60.244 47.826 0.00 0.00 0.00 3.62
461 463 2.593026 CCCTTGTTTGGTTTGCTAGGA 58.407 47.619 0.00 0.00 0.00 2.94
464 466 1.710816 CCCCCTTGTTTGGTTTGCTA 58.289 50.000 0.00 0.00 0.00 3.49
498 500 7.704899 GGTGCTTCTAAAGACTTTTAGCAAAAA 59.295 33.333 22.72 7.71 43.52 1.94
499 501 7.068226 AGGTGCTTCTAAAGACTTTTAGCAAAA 59.932 33.333 22.72 7.95 43.52 2.44
500 502 6.546034 AGGTGCTTCTAAAGACTTTTAGCAAA 59.454 34.615 22.72 8.44 43.52 3.68
501 503 6.062095 AGGTGCTTCTAAAGACTTTTAGCAA 58.938 36.000 22.72 11.82 43.52 3.91
502 504 5.621193 AGGTGCTTCTAAAGACTTTTAGCA 58.379 37.500 19.63 19.63 43.52 3.49
504 506 6.468543 AGGAGGTGCTTCTAAAGACTTTTAG 58.531 40.000 5.61 3.33 44.64 1.85
505 507 6.435292 AGGAGGTGCTTCTAAAGACTTTTA 57.565 37.500 5.61 0.00 0.00 1.52
507 509 4.984146 AGGAGGTGCTTCTAAAGACTTT 57.016 40.909 5.62 5.62 0.00 2.66
508 510 4.348168 TCAAGGAGGTGCTTCTAAAGACTT 59.652 41.667 0.00 0.00 0.00 3.01
511 513 4.160329 TCTCAAGGAGGTGCTTCTAAAGA 58.840 43.478 0.00 0.00 0.00 2.52
512 514 4.020662 ACTCTCAAGGAGGTGCTTCTAAAG 60.021 45.833 0.00 0.00 45.83 1.85
513 515 3.904339 ACTCTCAAGGAGGTGCTTCTAAA 59.096 43.478 0.00 0.00 45.83 1.85
514 516 3.511477 ACTCTCAAGGAGGTGCTTCTAA 58.489 45.455 0.00 0.00 45.83 2.10
516 518 2.022718 ACTCTCAAGGAGGTGCTTCT 57.977 50.000 0.00 0.00 45.83 2.85
518 520 4.917906 AAATACTCTCAAGGAGGTGCTT 57.082 40.909 0.00 0.00 45.83 3.91
519 521 4.917906 AAAATACTCTCAAGGAGGTGCT 57.082 40.909 0.00 0.00 45.83 4.40
520 522 5.003804 TGAAAAATACTCTCAAGGAGGTGC 58.996 41.667 0.00 0.00 45.83 5.01
521 523 7.510549 TTTGAAAAATACTCTCAAGGAGGTG 57.489 36.000 0.00 0.00 45.83 4.00
567 569 6.157904 GTGTTTGGTTCTCTAGTCTTAGGAC 58.842 44.000 0.00 0.00 42.41 3.85
568 570 5.245526 GGTGTTTGGTTCTCTAGTCTTAGGA 59.754 44.000 0.00 0.00 0.00 2.94
569 571 5.011738 TGGTGTTTGGTTCTCTAGTCTTAGG 59.988 44.000 0.00 0.00 0.00 2.69
570 572 6.097915 TGGTGTTTGGTTCTCTAGTCTTAG 57.902 41.667 0.00 0.00 0.00 2.18
572 574 5.308237 AGATGGTGTTTGGTTCTCTAGTCTT 59.692 40.000 0.00 0.00 0.00 3.01
573 575 4.841246 AGATGGTGTTTGGTTCTCTAGTCT 59.159 41.667 0.00 0.00 0.00 3.24
574 576 5.153950 AGATGGTGTTTGGTTCTCTAGTC 57.846 43.478 0.00 0.00 0.00 2.59
575 577 4.593206 TGAGATGGTGTTTGGTTCTCTAGT 59.407 41.667 0.00 0.00 35.09 2.57
576 578 5.152623 TGAGATGGTGTTTGGTTCTCTAG 57.847 43.478 0.00 0.00 35.09 2.43
577 579 5.560722 TTGAGATGGTGTTTGGTTCTCTA 57.439 39.130 0.00 0.00 35.09 2.43
578 580 4.437682 TTGAGATGGTGTTTGGTTCTCT 57.562 40.909 0.00 0.00 35.09 3.10
579 581 5.464168 CAATTGAGATGGTGTTTGGTTCTC 58.536 41.667 0.00 0.00 34.70 2.87
580 582 4.262164 GCAATTGAGATGGTGTTTGGTTCT 60.262 41.667 10.34 0.00 0.00 3.01
581 583 3.989817 GCAATTGAGATGGTGTTTGGTTC 59.010 43.478 10.34 0.00 0.00 3.62
582 584 3.387374 TGCAATTGAGATGGTGTTTGGTT 59.613 39.130 10.34 0.00 0.00 3.67
584 586 3.319755 GTGCAATTGAGATGGTGTTTGG 58.680 45.455 10.34 0.00 0.00 3.28
585 587 3.006110 AGGTGCAATTGAGATGGTGTTTG 59.994 43.478 10.34 0.00 0.00 2.93
586 588 3.233507 AGGTGCAATTGAGATGGTGTTT 58.766 40.909 10.34 0.00 0.00 2.83
587 589 2.880443 AGGTGCAATTGAGATGGTGTT 58.120 42.857 10.34 0.00 0.00 3.32
588 590 2.592102 AGGTGCAATTGAGATGGTGT 57.408 45.000 10.34 0.00 0.00 4.16
589 591 3.947910 AAAGGTGCAATTGAGATGGTG 57.052 42.857 10.34 0.00 0.00 4.17
590 592 4.154942 AGAAAAGGTGCAATTGAGATGGT 58.845 39.130 10.34 0.00 0.00 3.55
591 593 4.796038 AGAAAAGGTGCAATTGAGATGG 57.204 40.909 10.34 0.00 0.00 3.51
592 594 6.702723 TCAAAAGAAAAGGTGCAATTGAGATG 59.297 34.615 10.34 0.00 0.00 2.90
623 626 5.618056 ATGTGCTTCATAGTTCACAACAG 57.382 39.130 0.00 0.00 41.92 3.16
708 711 1.005569 AGTGGGATACGTCTCAGGTCA 59.994 52.381 3.17 0.00 34.91 4.02
730 733 6.397272 TGATTTATTCATCAAAAGCCACACC 58.603 36.000 0.00 0.00 29.81 4.16
770 773 5.652452 AGACGGGATTTGCTTAGCTATTTTT 59.348 36.000 5.60 0.00 0.00 1.94
772 775 4.781934 AGACGGGATTTGCTTAGCTATTT 58.218 39.130 5.60 0.00 0.00 1.40
820 1098 3.698040 ACGGAGAGCTTTCGGACTTATTA 59.302 43.478 17.26 0.00 0.00 0.98
851 1129 4.191015 GGTGAATCGGGGGAGGCC 62.191 72.222 0.00 0.00 0.00 5.19
864 1142 1.211949 GGATTGGGGATTTCTCGGTGA 59.788 52.381 0.00 0.00 0.00 4.02
1522 1844 2.471255 GCTGTATGCGAACCAGCTT 58.529 52.632 9.21 0.00 46.23 3.74
1899 2226 5.163405 TGCAGAAACTGTATCTCCTCCATAC 60.163 44.000 0.00 0.00 33.43 2.39
1956 2283 9.193806 AGAATAAGTTTGCTGATATGGTGAAAT 57.806 29.630 0.00 0.00 0.00 2.17
3108 3912 5.111989 TCAGTGATCGAGTCATGGAAAATC 58.888 41.667 0.00 0.00 39.48 2.17
3279 4094 5.235305 TCAAAGTTCAGTCTCACAAAAGC 57.765 39.130 0.00 0.00 0.00 3.51
3301 4116 5.133221 AGTTGCTGGACTTCAACAAGTTAT 58.867 37.500 7.68 0.00 43.37 1.89
3311 4128 2.687935 TGGAAACAAGTTGCTGGACTTC 59.312 45.455 1.81 0.00 37.76 3.01
3379 4196 3.576982 TCAGTCTCACGGGTACTGAAAAT 59.423 43.478 18.87 0.00 44.89 1.82
3389 4206 0.668706 CAGCAGTTCAGTCTCACGGG 60.669 60.000 0.00 0.00 0.00 5.28
3416 4234 7.228706 CCAAGTCTCCAAGTTAACAAGTTACAT 59.771 37.037 8.61 0.00 0.00 2.29
3456 4274 4.650754 ATTACTACTACACTTGAGCCCG 57.349 45.455 0.00 0.00 0.00 6.13
3457 4275 6.171213 ACAAATTACTACTACACTTGAGCCC 58.829 40.000 0.00 0.00 0.00 5.19
3477 4295 7.391148 AAACAAGCTTCTAGAGTTGAACAAA 57.609 32.000 14.98 0.00 0.00 2.83
3505 4323 5.182380 TCTTTAAAATCGGCCATTCGAAGTT 59.818 36.000 2.24 0.00 42.69 2.66
3521 4506 9.959721 ACCTCAATATTGTAGAGCTCTTTAAAA 57.040 29.630 23.84 6.56 0.00 1.52
3574 4559 3.440173 CGCCACCAAATTGTGAGAAGTAT 59.560 43.478 0.00 0.00 38.55 2.12
3618 4603 7.151999 ACCAATTCGAAGTACATAAATGCAA 57.848 32.000 3.35 0.00 0.00 4.08
3623 4608 9.275398 ACAAGTTACCAATTCGAAGTACATAAA 57.725 29.630 3.35 0.00 0.00 1.40
3624 4609 8.836268 ACAAGTTACCAATTCGAAGTACATAA 57.164 30.769 3.35 0.00 0.00 1.90
3632 4617 6.687081 AAGTGAACAAGTTACCAATTCGAA 57.313 33.333 0.00 0.00 0.00 3.71
3633 4618 7.517101 CGTTAAGTGAACAAGTTACCAATTCGA 60.517 37.037 0.00 0.00 37.99 3.71
3634 4619 6.572254 CGTTAAGTGAACAAGTTACCAATTCG 59.428 38.462 0.00 0.00 37.99 3.34
3635 4620 6.854381 CCGTTAAGTGAACAAGTTACCAATTC 59.146 38.462 0.00 0.00 37.99 2.17
3636 4621 6.238814 CCCGTTAAGTGAACAAGTTACCAATT 60.239 38.462 0.00 0.00 37.99 2.32
3637 4622 5.239963 CCCGTTAAGTGAACAAGTTACCAAT 59.760 40.000 0.00 0.00 37.99 3.16
3638 4623 4.575645 CCCGTTAAGTGAACAAGTTACCAA 59.424 41.667 0.00 0.00 37.99 3.67
3641 4626 3.560896 TGCCCGTTAAGTGAACAAGTTAC 59.439 43.478 0.00 0.00 37.99 2.50
3643 4628 2.616842 CTGCCCGTTAAGTGAACAAGTT 59.383 45.455 0.00 0.00 37.99 2.66
3644 4629 2.158871 TCTGCCCGTTAAGTGAACAAGT 60.159 45.455 0.00 0.00 37.99 3.16
3645 4630 2.480419 CTCTGCCCGTTAAGTGAACAAG 59.520 50.000 0.00 0.00 37.99 3.16
3647 4632 1.689813 TCTCTGCCCGTTAAGTGAACA 59.310 47.619 0.00 0.00 37.99 3.18
3648 4633 2.450609 TCTCTGCCCGTTAAGTGAAC 57.549 50.000 0.00 0.00 34.41 3.18
3652 4646 0.460311 CCGATCTCTGCCCGTTAAGT 59.540 55.000 0.00 0.00 0.00 2.24
3733 4734 5.496556 CCTATAACATCTTTCCCACACACA 58.503 41.667 0.00 0.00 0.00 3.72
3751 4768 4.601406 ACCCATTTTTGACTGCCCTATA 57.399 40.909 0.00 0.00 0.00 1.31
3916 4956 7.860584 AGAGAGAGGAAAGAAAAATAGCAGAT 58.139 34.615 0.00 0.00 0.00 2.90
3919 4959 7.009179 TGAGAGAGAGGAAAGAAAAATAGCA 57.991 36.000 0.00 0.00 0.00 3.49
3922 4962 6.881602 GCCTTGAGAGAGAGGAAAGAAAAATA 59.118 38.462 0.00 0.00 34.91 1.40
3923 4963 5.709631 GCCTTGAGAGAGAGGAAAGAAAAAT 59.290 40.000 0.00 0.00 34.91 1.82
3926 4966 3.306364 CGCCTTGAGAGAGAGGAAAGAAA 60.306 47.826 0.00 0.00 34.91 2.52
3927 4967 2.232452 CGCCTTGAGAGAGAGGAAAGAA 59.768 50.000 0.00 0.00 34.91 2.52
3928 4968 1.821753 CGCCTTGAGAGAGAGGAAAGA 59.178 52.381 0.00 0.00 34.91 2.52
3929 4969 1.821753 TCGCCTTGAGAGAGAGGAAAG 59.178 52.381 0.00 0.00 34.91 2.62
3930 4970 1.924731 TCGCCTTGAGAGAGAGGAAA 58.075 50.000 0.00 0.00 34.91 3.13
3931 4971 2.151502 ATCGCCTTGAGAGAGAGGAA 57.848 50.000 0.00 0.00 34.91 3.36
3932 4972 3.218453 CTTATCGCCTTGAGAGAGAGGA 58.782 50.000 0.00 0.00 34.91 3.71
3933 4973 2.295909 CCTTATCGCCTTGAGAGAGAGG 59.704 54.545 0.00 0.00 36.09 3.69
3934 4974 2.295909 CCCTTATCGCCTTGAGAGAGAG 59.704 54.545 0.00 0.00 0.00 3.20
3935 4975 2.091830 TCCCTTATCGCCTTGAGAGAGA 60.092 50.000 0.00 0.00 0.00 3.10
3936 4976 2.311463 TCCCTTATCGCCTTGAGAGAG 58.689 52.381 0.00 0.00 0.00 3.20
3937 4977 2.454336 TCCCTTATCGCCTTGAGAGA 57.546 50.000 0.00 0.00 0.00 3.10
3938 4978 3.462021 CTTTCCCTTATCGCCTTGAGAG 58.538 50.000 0.00 0.00 0.00 3.20
3939 4979 2.420129 GCTTTCCCTTATCGCCTTGAGA 60.420 50.000 0.00 0.00 0.00 3.27
3940 4980 1.943340 GCTTTCCCTTATCGCCTTGAG 59.057 52.381 0.00 0.00 0.00 3.02
3941 4981 1.280710 TGCTTTCCCTTATCGCCTTGA 59.719 47.619 0.00 0.00 0.00 3.02
3942 4982 1.750193 TGCTTTCCCTTATCGCCTTG 58.250 50.000 0.00 0.00 0.00 3.61
3943 4983 2.736670 ATGCTTTCCCTTATCGCCTT 57.263 45.000 0.00 0.00 0.00 4.35
3944 4984 2.576615 GAATGCTTTCCCTTATCGCCT 58.423 47.619 0.87 0.00 0.00 5.52
3945 4985 1.609072 GGAATGCTTTCCCTTATCGCC 59.391 52.381 18.46 0.00 44.96 5.54
3955 4995 2.969628 TCGAGAGGAGGAATGCTTTC 57.030 50.000 3.77 3.77 0.00 2.62
3956 4996 3.739519 CGAATCGAGAGGAGGAATGCTTT 60.740 47.826 0.00 0.00 0.00 3.51
3957 4997 2.223923 CGAATCGAGAGGAGGAATGCTT 60.224 50.000 0.00 0.00 0.00 3.91
3958 4998 1.339610 CGAATCGAGAGGAGGAATGCT 59.660 52.381 0.00 0.00 0.00 3.79
3959 4999 1.777101 CGAATCGAGAGGAGGAATGC 58.223 55.000 0.00 0.00 0.00 3.56
3960 5000 1.604185 GGCGAATCGAGAGGAGGAATG 60.604 57.143 6.91 0.00 0.00 2.67
3961 5001 0.676736 GGCGAATCGAGAGGAGGAAT 59.323 55.000 6.91 0.00 0.00 3.01
3962 5002 0.395862 AGGCGAATCGAGAGGAGGAA 60.396 55.000 6.91 0.00 0.00 3.36
3963 5003 0.820074 GAGGCGAATCGAGAGGAGGA 60.820 60.000 6.91 0.00 0.00 3.71
3964 5004 1.657556 GAGGCGAATCGAGAGGAGG 59.342 63.158 6.91 0.00 0.00 4.30
3965 5005 1.657556 GGAGGCGAATCGAGAGGAG 59.342 63.158 6.91 0.00 0.00 3.69
3966 5006 1.828660 GGGAGGCGAATCGAGAGGA 60.829 63.158 6.91 0.00 0.00 3.71
3967 5007 2.731374 GGGAGGCGAATCGAGAGG 59.269 66.667 6.91 0.00 0.00 3.69
3968 5008 1.801309 GAGGGGAGGCGAATCGAGAG 61.801 65.000 6.91 0.00 0.00 3.20
3969 5009 1.828660 GAGGGGAGGCGAATCGAGA 60.829 63.158 6.91 0.00 0.00 4.04
3970 5010 2.731374 GAGGGGAGGCGAATCGAG 59.269 66.667 6.91 0.00 0.00 4.04
3971 5011 2.838225 GGAGGGGAGGCGAATCGA 60.838 66.667 6.91 0.00 0.00 3.59
3972 5012 4.286320 CGGAGGGGAGGCGAATCG 62.286 72.222 0.00 0.00 0.00 3.34
3973 5013 4.610714 GCGGAGGGGAGGCGAATC 62.611 72.222 0.00 0.00 0.00 2.52
4008 5048 4.066139 AATGCCCTCCCTGCCACC 62.066 66.667 0.00 0.00 0.00 4.61
4009 5049 2.440980 GAATGCCCTCCCTGCCAC 60.441 66.667 0.00 0.00 0.00 5.01
4010 5050 3.743017 GGAATGCCCTCCCTGCCA 61.743 66.667 0.00 0.00 0.00 4.92
4011 5051 3.424105 AGGAATGCCCTCCCTGCC 61.424 66.667 0.00 0.00 43.31 4.85
4012 5052 2.123982 CAGGAATGCCCTCCCTGC 60.124 66.667 0.00 0.00 45.60 4.85
4013 5053 2.599597 CCAGGAATGCCCTCCCTG 59.400 66.667 0.00 0.00 45.60 4.45
4014 5054 3.424105 GCCAGGAATGCCCTCCCT 61.424 66.667 0.00 0.00 45.60 4.20
4015 5055 4.883354 CGCCAGGAATGCCCTCCC 62.883 72.222 0.00 0.00 45.60 4.30
4021 5061 3.830192 CCAAGGCGCCAGGAATGC 61.830 66.667 31.54 0.00 0.00 3.56
4022 5062 1.535204 AAACCAAGGCGCCAGGAATG 61.535 55.000 35.72 22.24 0.00 2.67
4023 5063 1.228862 AAACCAAGGCGCCAGGAAT 60.229 52.632 35.72 23.64 0.00 3.01
4024 5064 1.901464 GAAACCAAGGCGCCAGGAA 60.901 57.895 35.72 0.00 0.00 3.36
4025 5065 2.282180 GAAACCAAGGCGCCAGGA 60.282 61.111 35.72 0.00 0.00 3.86
4026 5066 3.737172 CGAAACCAAGGCGCCAGG 61.737 66.667 31.54 30.53 0.00 4.45
4027 5067 3.737172 CCGAAACCAAGGCGCCAG 61.737 66.667 31.54 20.72 0.00 4.85
4028 5068 2.677765 TAACCGAAACCAAGGCGCCA 62.678 55.000 31.54 0.00 0.00 5.69
4029 5069 1.918868 CTAACCGAAACCAAGGCGCC 61.919 60.000 21.89 21.89 0.00 6.53
4030 5070 1.232621 ACTAACCGAAACCAAGGCGC 61.233 55.000 0.00 0.00 0.00 6.53
4031 5071 1.997606 CTACTAACCGAAACCAAGGCG 59.002 52.381 0.00 0.00 0.00 5.52
4032 5072 3.323751 TCTACTAACCGAAACCAAGGC 57.676 47.619 0.00 0.00 0.00 4.35
4033 5073 6.579865 ACATATCTACTAACCGAAACCAAGG 58.420 40.000 0.00 0.00 0.00 3.61
4034 5074 7.866393 CCTACATATCTACTAACCGAAACCAAG 59.134 40.741 0.00 0.00 0.00 3.61
4035 5075 7.201938 CCCTACATATCTACTAACCGAAACCAA 60.202 40.741 0.00 0.00 0.00 3.67
4036 5076 6.266103 CCCTACATATCTACTAACCGAAACCA 59.734 42.308 0.00 0.00 0.00 3.67
4037 5077 6.266330 ACCCTACATATCTACTAACCGAAACC 59.734 42.308 0.00 0.00 0.00 3.27
4038 5078 7.282332 ACCCTACATATCTACTAACCGAAAC 57.718 40.000 0.00 0.00 0.00 2.78
4039 5079 7.902920 AACCCTACATATCTACTAACCGAAA 57.097 36.000 0.00 0.00 0.00 3.46
4040 5080 7.902920 AAACCCTACATATCTACTAACCGAA 57.097 36.000 0.00 0.00 0.00 4.30
4041 5081 8.220559 ACTAAACCCTACATATCTACTAACCGA 58.779 37.037 0.00 0.00 0.00 4.69
4042 5082 8.401490 ACTAAACCCTACATATCTACTAACCG 57.599 38.462 0.00 0.00 0.00 4.44
4043 5083 9.359653 TGACTAAACCCTACATATCTACTAACC 57.640 37.037 0.00 0.00 0.00 2.85
4047 5087 9.656323 TCAATGACTAAACCCTACATATCTACT 57.344 33.333 0.00 0.00 0.00 2.57
4050 5090 9.784531 CATTCAATGACTAAACCCTACATATCT 57.215 33.333 0.00 0.00 0.00 1.98
4051 5091 9.003658 CCATTCAATGACTAAACCCTACATATC 57.996 37.037 0.00 0.00 0.00 1.63
4052 5092 7.944554 CCCATTCAATGACTAAACCCTACATAT 59.055 37.037 0.00 0.00 0.00 1.78
4053 5093 7.287061 CCCATTCAATGACTAAACCCTACATA 58.713 38.462 0.00 0.00 0.00 2.29
4054 5094 6.129179 CCCATTCAATGACTAAACCCTACAT 58.871 40.000 0.00 0.00 0.00 2.29
4055 5095 5.505780 CCCATTCAATGACTAAACCCTACA 58.494 41.667 0.00 0.00 0.00 2.74
4056 5096 4.338400 GCCCATTCAATGACTAAACCCTAC 59.662 45.833 0.00 0.00 0.00 3.18
4057 5097 4.532834 GCCCATTCAATGACTAAACCCTA 58.467 43.478 0.00 0.00 0.00 3.53
4058 5098 3.365472 GCCCATTCAATGACTAAACCCT 58.635 45.455 0.00 0.00 0.00 4.34
4059 5099 2.099098 CGCCCATTCAATGACTAAACCC 59.901 50.000 0.00 0.00 0.00 4.11
4060 5100 2.099098 CCGCCCATTCAATGACTAAACC 59.901 50.000 0.00 0.00 0.00 3.27
4061 5101 2.752903 ACCGCCCATTCAATGACTAAAC 59.247 45.455 0.00 0.00 0.00 2.01
4062 5102 2.752354 CACCGCCCATTCAATGACTAAA 59.248 45.455 0.00 0.00 0.00 1.85
4063 5103 2.364632 CACCGCCCATTCAATGACTAA 58.635 47.619 0.00 0.00 0.00 2.24
4064 5104 2.016604 GCACCGCCCATTCAATGACTA 61.017 52.381 0.00 0.00 0.00 2.59
4065 5105 1.315257 GCACCGCCCATTCAATGACT 61.315 55.000 0.00 0.00 0.00 3.41
4066 5106 1.139520 GCACCGCCCATTCAATGAC 59.860 57.895 0.00 0.00 0.00 3.06
4067 5107 0.611618 AAGCACCGCCCATTCAATGA 60.612 50.000 0.00 0.00 0.00 2.57
4068 5108 0.458889 CAAGCACCGCCCATTCAATG 60.459 55.000 0.00 0.00 0.00 2.82
4069 5109 1.606885 CCAAGCACCGCCCATTCAAT 61.607 55.000 0.00 0.00 0.00 2.57
4070 5110 2.274645 CCAAGCACCGCCCATTCAA 61.275 57.895 0.00 0.00 0.00 2.69
4071 5111 2.676121 CCAAGCACCGCCCATTCA 60.676 61.111 0.00 0.00 0.00 2.57
4072 5112 2.361104 TCCAAGCACCGCCCATTC 60.361 61.111 0.00 0.00 0.00 2.67
4073 5113 2.676471 GTCCAAGCACCGCCCATT 60.676 61.111 0.00 0.00 0.00 3.16
4077 5117 3.379865 TATCCGTCCAAGCACCGCC 62.380 63.158 0.00 0.00 0.00 6.13
4078 5118 1.883084 CTATCCGTCCAAGCACCGC 60.883 63.158 0.00 0.00 0.00 5.68
4079 5119 1.883084 GCTATCCGTCCAAGCACCG 60.883 63.158 0.00 0.00 36.26 4.94
4080 5120 1.883084 CGCTATCCGTCCAAGCACC 60.883 63.158 0.00 0.00 35.98 5.01
4081 5121 1.883084 CCGCTATCCGTCCAAGCAC 60.883 63.158 0.00 0.00 35.98 4.40
4082 5122 2.499205 CCGCTATCCGTCCAAGCA 59.501 61.111 0.00 0.00 35.98 3.91
4083 5123 2.967615 GCCGCTATCCGTCCAAGC 60.968 66.667 0.00 0.00 34.38 4.01
4084 5124 2.658593 CGCCGCTATCCGTCCAAG 60.659 66.667 0.00 0.00 34.38 3.61
4085 5125 4.215742 CCGCCGCTATCCGTCCAA 62.216 66.667 0.00 0.00 34.38 3.53
4097 5137 4.918201 GAGGATTGGAGCCCGCCG 62.918 72.222 0.00 0.00 0.00 6.46
4098 5138 3.483869 AGAGGATTGGAGCCCGCC 61.484 66.667 0.00 0.00 0.00 6.13
4099 5139 2.203126 CAGAGGATTGGAGCCCGC 60.203 66.667 0.00 0.00 0.00 6.13
4100 5140 2.203126 GCAGAGGATTGGAGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
4101 5141 0.750911 CTTGCAGAGGATTGGAGCCC 60.751 60.000 0.00 0.00 0.00 5.19
4102 5142 0.034670 ACTTGCAGAGGATTGGAGCC 60.035 55.000 0.00 0.00 0.00 4.70
4103 5143 1.742268 GAACTTGCAGAGGATTGGAGC 59.258 52.381 0.00 0.00 0.00 4.70
4104 5144 3.347077 AGAACTTGCAGAGGATTGGAG 57.653 47.619 0.00 0.00 0.00 3.86
4105 5145 3.795688 AAGAACTTGCAGAGGATTGGA 57.204 42.857 0.00 0.00 0.00 3.53
4106 5146 5.248640 TCTTAAGAACTTGCAGAGGATTGG 58.751 41.667 1.68 0.00 0.00 3.16
4107 5147 5.353678 CCTCTTAAGAACTTGCAGAGGATTG 59.646 44.000 24.83 9.76 45.29 2.67
4108 5148 5.495640 CCTCTTAAGAACTTGCAGAGGATT 58.504 41.667 24.83 0.00 45.29 3.01
4109 5149 4.080638 CCCTCTTAAGAACTTGCAGAGGAT 60.081 45.833 27.75 0.00 45.29 3.24
4110 5150 3.261897 CCCTCTTAAGAACTTGCAGAGGA 59.738 47.826 27.75 6.50 45.29 3.71
4111 5151 3.604582 CCCTCTTAAGAACTTGCAGAGG 58.395 50.000 23.49 23.49 43.79 3.69
4112 5152 3.604582 CCCCTCTTAAGAACTTGCAGAG 58.395 50.000 6.63 13.82 34.05 3.35
4113 5153 2.290323 GCCCCTCTTAAGAACTTGCAGA 60.290 50.000 6.63 0.00 0.00 4.26
4114 5154 2.087646 GCCCCTCTTAAGAACTTGCAG 58.912 52.381 6.63 0.00 0.00 4.41
4115 5155 1.271926 GGCCCCTCTTAAGAACTTGCA 60.272 52.381 6.63 0.00 0.00 4.08
4116 5156 1.464734 GGCCCCTCTTAAGAACTTGC 58.535 55.000 6.63 6.96 0.00 4.01
4117 5157 1.739067 CGGCCCCTCTTAAGAACTTG 58.261 55.000 6.63 0.00 0.00 3.16
4118 5158 0.035343 GCGGCCCCTCTTAAGAACTT 60.035 55.000 6.63 0.00 0.00 2.66
4119 5159 1.602771 GCGGCCCCTCTTAAGAACT 59.397 57.895 6.63 0.00 0.00 3.01
4120 5160 1.814169 CGCGGCCCCTCTTAAGAAC 60.814 63.158 6.63 0.00 0.00 3.01
4121 5161 1.546589 TTCGCGGCCCCTCTTAAGAA 61.547 55.000 6.13 0.00 0.00 2.52
4122 5162 1.956629 CTTCGCGGCCCCTCTTAAGA 61.957 60.000 6.13 4.81 0.00 2.10
4123 5163 1.521681 CTTCGCGGCCCCTCTTAAG 60.522 63.158 6.13 0.00 0.00 1.85
4124 5164 2.288025 ACTTCGCGGCCCCTCTTAA 61.288 57.895 6.13 0.00 0.00 1.85
4125 5165 2.682494 ACTTCGCGGCCCCTCTTA 60.682 61.111 6.13 0.00 0.00 2.10
4126 5166 4.394712 CACTTCGCGGCCCCTCTT 62.395 66.667 6.13 0.00 0.00 2.85
4144 5184 7.271511 AGTGAAGTATTGGAGATGCTCTTAAG 58.728 38.462 0.00 0.00 0.00 1.85
4145 5185 7.187824 AGTGAAGTATTGGAGATGCTCTTAA 57.812 36.000 0.00 0.00 0.00 1.85
4146 5186 6.798427 AGTGAAGTATTGGAGATGCTCTTA 57.202 37.500 0.00 0.00 0.00 2.10
4147 5187 5.690464 AGTGAAGTATTGGAGATGCTCTT 57.310 39.130 0.00 0.00 0.00 2.85
4148 5188 6.798427 TTAGTGAAGTATTGGAGATGCTCT 57.202 37.500 0.00 0.00 0.00 4.09
4149 5189 7.849804 TTTTAGTGAAGTATTGGAGATGCTC 57.150 36.000 0.00 0.00 0.00 4.26
4172 5212 2.894765 CGTGGTTATTGGGGGAGTTTTT 59.105 45.455 0.00 0.00 0.00 1.94
4173 5213 2.158430 ACGTGGTTATTGGGGGAGTTTT 60.158 45.455 0.00 0.00 0.00 2.43
4174 5214 1.426215 ACGTGGTTATTGGGGGAGTTT 59.574 47.619 0.00 0.00 0.00 2.66
4175 5215 1.069775 ACGTGGTTATTGGGGGAGTT 58.930 50.000 0.00 0.00 0.00 3.01
4176 5216 1.955451 TACGTGGTTATTGGGGGAGT 58.045 50.000 0.00 0.00 0.00 3.85
4177 5217 3.211045 CAATACGTGGTTATTGGGGGAG 58.789 50.000 0.00 0.00 31.85 4.30
4178 5218 2.092321 CCAATACGTGGTTATTGGGGGA 60.092 50.000 16.79 0.00 45.44 4.81
4179 5219 2.303175 CCAATACGTGGTTATTGGGGG 58.697 52.381 16.79 0.00 45.44 5.40
4198 5238 2.231716 AAGTGTTATTTGGGAGCCCC 57.768 50.000 2.49 3.42 45.71 5.80
4199 5239 4.617253 AAAAAGTGTTATTTGGGAGCCC 57.383 40.909 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.