Multiple sequence alignment - TraesCS7B01G419500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G419500 chr7B 100.000 7389 0 0 1 7389 688736171 688728783 0.000000e+00 13646.0
1 TraesCS7B01G419500 chr7B 86.630 733 76 9 6648 7380 705332775 705333485 0.000000e+00 791.0
2 TraesCS7B01G419500 chr7B 92.553 94 5 2 3309 3401 451446974 451446882 4.650000e-27 134.0
3 TraesCS7B01G419500 chrUn 90.899 1879 147 11 5509 7382 348870075 348868216 0.000000e+00 2501.0
4 TraesCS7B01G419500 chrUn 91.521 861 71 2 6524 7382 336818487 336817627 0.000000e+00 1184.0
5 TraesCS7B01G419500 chrUn 92.336 822 51 6 4072 4889 83256789 83255976 0.000000e+00 1158.0
6 TraesCS7B01G419500 chrUn 91.850 638 49 3 1 636 9920189 9920825 0.000000e+00 887.0
7 TraesCS7B01G419500 chrUn 95.455 396 18 0 5998 6393 416037437 416037042 3.760000e-177 632.0
8 TraesCS7B01G419500 chrUn 90.533 338 26 5 3724 4059 83257191 83256858 6.800000e-120 442.0
9 TraesCS7B01G419500 chrUn 92.432 185 9 3 4927 5107 416037619 416037436 7.350000e-65 259.0
10 TraesCS7B01G419500 chr7A 90.145 1725 129 12 996 2704 696905317 696903618 0.000000e+00 2206.0
11 TraesCS7B01G419500 chr7A 91.521 861 71 2 6524 7382 696963356 696962496 0.000000e+00 1184.0
12 TraesCS7B01G419500 chr7A 91.981 823 53 6 4072 4889 696966054 696965240 0.000000e+00 1142.0
13 TraesCS7B01G419500 chr7A 90.868 668 45 11 3402 4059 696966784 696966123 0.000000e+00 881.0
14 TraesCS7B01G419500 chr7A 91.107 596 50 2 5340 5933 696963946 696963352 0.000000e+00 804.0
15 TraesCS7B01G419500 chr7A 91.228 399 26 7 4927 5320 696964329 696963935 1.090000e-147 534.0
16 TraesCS7B01G419500 chr7A 90.750 400 27 7 4927 5320 696895824 696895429 6.570000e-145 525.0
17 TraesCS7B01G419500 chr7A 91.642 335 18 6 3402 3728 696902791 696902459 8.740000e-124 455.0
18 TraesCS7B01G419500 chr7A 88.047 343 40 1 2362 2704 696967952 696967611 8.930000e-109 405.0
19 TraesCS7B01G419500 chr7A 90.545 275 19 4 698 966 696905595 696905322 2.540000e-94 357.0
20 TraesCS7B01G419500 chr7A 86.087 230 31 1 2701 2929 696967141 696966912 5.730000e-61 246.0
21 TraesCS7B01G419500 chr7A 85.652 230 32 1 2701 2929 696903148 696902919 2.660000e-59 241.0
22 TraesCS7B01G419500 chr7A 91.765 170 11 2 5340 5507 696895440 696895272 4.460000e-57 233.0
23 TraesCS7B01G419500 chr7A 94.253 87 4 1 3319 3404 274086372 274086458 1.670000e-26 132.0
24 TraesCS7B01G419500 chr7A 90.909 66 3 3 2124 2188 727333009 727332946 1.320000e-12 86.1
25 TraesCS7B01G419500 chr7D 89.227 1513 130 21 5340 6843 605237316 605238804 0.000000e+00 1860.0
26 TraesCS7B01G419500 chr7D 90.504 1011 64 12 881 1886 605223061 605224044 0.000000e+00 1306.0
27 TraesCS7B01G419500 chr7D 92.175 639 50 0 1 639 498241431 498242069 0.000000e+00 904.0
28 TraesCS7B01G419500 chr7D 88.766 543 42 3 6840 7382 605260410 605260933 0.000000e+00 647.0
29 TraesCS7B01G419500 chr7D 86.007 586 76 6 2701 3281 605225667 605226251 2.260000e-174 623.0
30 TraesCS7B01G419500 chr7D 88.273 469 47 3 4466 4933 605232204 605232665 8.380000e-154 555.0
31 TraesCS7B01G419500 chr7D 86.331 417 50 5 2060 2476 605224318 605224727 1.460000e-121 448.0
32 TraesCS7B01G419500 chr7D 85.360 403 29 22 4927 5320 605236946 605237327 2.500000e-104 390.0
33 TraesCS7B01G419500 chr7D 87.798 336 32 4 4412 4747 605227136 605227462 1.160000e-102 385.0
34 TraesCS7B01G419500 chr7D 85.143 350 35 11 2003 2341 605227460 605227803 7.100000e-90 342.0
35 TraesCS7B01G419500 chr7D 89.655 261 17 7 3400 3652 605226275 605226533 2.570000e-84 324.0
36 TraesCS7B01G419500 chr7D 87.615 218 22 3 1885 2102 605224082 605224294 1.590000e-61 248.0
37 TraesCS7B01G419500 chr7D 91.160 181 16 0 2524 2704 605225018 605225198 5.730000e-61 246.0
38 TraesCS7B01G419500 chr7D 90.816 98 7 2 759 855 605222970 605223066 6.020000e-26 130.0
39 TraesCS7B01G419500 chr3D 92.500 640 46 2 1 639 498870967 498871605 0.000000e+00 915.0
40 TraesCS7B01G419500 chr3D 82.213 759 116 9 996 1737 306511695 306510939 2.910000e-178 636.0
41 TraesCS7B01G419500 chr3D 89.571 163 12 4 3919 4080 580154356 580154198 1.260000e-47 202.0
42 TraesCS7B01G419500 chr6D 91.994 637 50 1 2 637 32294776 32295412 0.000000e+00 893.0
43 TraesCS7B01G419500 chr4B 91.969 635 50 1 8 641 458321150 458320516 0.000000e+00 889.0
44 TraesCS7B01G419500 chr4B 94.318 88 4 1 3316 3402 429694757 429694670 4.650000e-27 134.0
45 TraesCS7B01G419500 chr5A 91.693 638 52 1 2 638 3306024 3305387 0.000000e+00 883.0
46 TraesCS7B01G419500 chr5A 89.368 348 37 0 4072 4419 340264671 340265018 8.800000e-119 438.0
47 TraesCS7B01G419500 chr5A 92.667 150 8 3 3915 4063 68101598 68101451 5.810000e-51 213.0
48 TraesCS7B01G419500 chr3B 91.930 632 50 1 8 638 11227051 11226420 0.000000e+00 883.0
49 TraesCS7B01G419500 chr3B 90.643 342 32 0 4072 4413 444927540 444927199 8.740000e-124 455.0
50 TraesCS7B01G419500 chr6B 91.785 633 52 0 8 640 529510199 529510831 0.000000e+00 881.0
51 TraesCS7B01G419500 chr6B 91.579 95 5 3 3311 3402 719861545 719861639 2.160000e-25 128.0
52 TraesCS7B01G419500 chr1B 91.667 636 53 0 8 643 60376968 60376333 0.000000e+00 881.0
53 TraesCS7B01G419500 chr1B 92.391 92 7 0 3314 3405 30762809 30762718 1.670000e-26 132.0
54 TraesCS7B01G419500 chr1B 81.148 122 18 5 3919 4037 133032325 133032206 7.890000e-15 93.5
55 TraesCS7B01G419500 chr3A 81.842 760 117 10 996 1737 425218961 425218205 2.930000e-173 619.0
56 TraesCS7B01G419500 chr3A 91.279 344 30 0 4072 4415 457745140 457745483 3.120000e-128 470.0
57 TraesCS7B01G419500 chr3A 86.087 115 10 6 3292 3403 61924262 61924373 1.300000e-22 119.0
58 TraesCS7B01G419500 chr3A 85.938 64 8 1 2133 2195 478238389 478238326 4.780000e-07 67.6
59 TraesCS7B01G419500 chr2D 91.570 344 29 0 4072 4415 331721930 331722273 6.710000e-130 475.0
60 TraesCS7B01G419500 chr2D 92.473 93 5 1 3319 3411 233398878 233398788 1.670000e-26 132.0
61 TraesCS7B01G419500 chr2D 81.633 147 24 3 3919 4063 32994882 32995027 1.300000e-22 119.0
62 TraesCS7B01G419500 chr1D 90.490 347 33 0 4072 4418 386773974 386773628 6.760000e-125 459.0
63 TraesCS7B01G419500 chr1D 90.411 146 12 2 3919 4063 386774176 386774032 2.720000e-44 191.0
64 TraesCS7B01G419500 chr1D 75.575 348 71 12 2351 2692 246042017 246041678 7.670000e-35 159.0
65 TraesCS7B01G419500 chr5D 89.855 345 33 2 4072 4415 411507909 411508252 6.800000e-120 442.0
66 TraesCS7B01G419500 chr5D 92.053 151 10 2 3914 4063 408484981 408484832 2.090000e-50 211.0
67 TraesCS7B01G419500 chr4D 89.826 344 35 0 4072 4415 449884510 449884853 6.800000e-120 442.0
68 TraesCS7B01G419500 chr5B 92.784 97 4 3 3316 3409 25333682 25333586 3.600000e-28 137.0
69 TraesCS7B01G419500 chr2A 86.087 115 10 6 3292 3403 464445069 464445180 1.300000e-22 119.0
70 TraesCS7B01G419500 chr2A 80.519 154 23 7 3914 4063 733444812 733444662 2.180000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G419500 chr7B 688728783 688736171 7388 True 13646.000000 13646 100.000000 1 7389 1 chr7B.!!$R2 7388
1 TraesCS7B01G419500 chr7B 705332775 705333485 710 False 791.000000 791 86.630000 6648 7380 1 chr7B.!!$F1 732
2 TraesCS7B01G419500 chrUn 348868216 348870075 1859 True 2501.000000 2501 90.899000 5509 7382 1 chrUn.!!$R2 1873
3 TraesCS7B01G419500 chrUn 336817627 336818487 860 True 1184.000000 1184 91.521000 6524 7382 1 chrUn.!!$R1 858
4 TraesCS7B01G419500 chrUn 9920189 9920825 636 False 887.000000 887 91.850000 1 636 1 chrUn.!!$F1 635
5 TraesCS7B01G419500 chrUn 83255976 83257191 1215 True 800.000000 1158 91.434500 3724 4889 2 chrUn.!!$R3 1165
6 TraesCS7B01G419500 chrUn 416037042 416037619 577 True 445.500000 632 93.943500 4927 6393 2 chrUn.!!$R4 1466
7 TraesCS7B01G419500 chr7A 696902459 696905595 3136 True 814.750000 2206 89.496000 698 3728 4 chr7A.!!$R3 3030
8 TraesCS7B01G419500 chr7A 696962496 696967952 5456 True 742.285714 1184 90.119857 2362 7382 7 chr7A.!!$R4 5020
9 TraesCS7B01G419500 chr7A 696895272 696895824 552 True 379.000000 525 91.257500 4927 5507 2 chr7A.!!$R2 580
10 TraesCS7B01G419500 chr7D 605236946 605238804 1858 False 1125.000000 1860 87.293500 4927 6843 2 chr7D.!!$F5 1916
11 TraesCS7B01G419500 chr7D 498241431 498242069 638 False 904.000000 904 92.175000 1 639 1 chr7D.!!$F1 638
12 TraesCS7B01G419500 chr7D 605260410 605260933 523 False 647.000000 647 88.766000 6840 7382 1 chr7D.!!$F3 542
13 TraesCS7B01G419500 chr7D 605222970 605227803 4833 False 450.222222 1306 88.336556 759 4747 9 chr7D.!!$F4 3988
14 TraesCS7B01G419500 chr3D 498870967 498871605 638 False 915.000000 915 92.500000 1 639 1 chr3D.!!$F1 638
15 TraesCS7B01G419500 chr3D 306510939 306511695 756 True 636.000000 636 82.213000 996 1737 1 chr3D.!!$R1 741
16 TraesCS7B01G419500 chr6D 32294776 32295412 636 False 893.000000 893 91.994000 2 637 1 chr6D.!!$F1 635
17 TraesCS7B01G419500 chr4B 458320516 458321150 634 True 889.000000 889 91.969000 8 641 1 chr4B.!!$R2 633
18 TraesCS7B01G419500 chr5A 3305387 3306024 637 True 883.000000 883 91.693000 2 638 1 chr5A.!!$R1 636
19 TraesCS7B01G419500 chr3B 11226420 11227051 631 True 883.000000 883 91.930000 8 638 1 chr3B.!!$R1 630
20 TraesCS7B01G419500 chr6B 529510199 529510831 632 False 881.000000 881 91.785000 8 640 1 chr6B.!!$F1 632
21 TraesCS7B01G419500 chr1B 60376333 60376968 635 True 881.000000 881 91.667000 8 643 1 chr1B.!!$R2 635
22 TraesCS7B01G419500 chr3A 425218205 425218961 756 True 619.000000 619 81.842000 996 1737 1 chr3A.!!$R1 741
23 TraesCS7B01G419500 chr1D 386773628 386774176 548 True 325.000000 459 90.450500 3919 4418 2 chr1D.!!$R2 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 685 0.112606 TCTCCCATCTACTAGCCCCG 59.887 60.000 0.00 0.00 0.00 5.73 F
1311 1329 0.178932 CCCTCGTATGGATCCTGGGA 60.179 60.000 14.23 4.38 35.40 4.37 F
2241 2393 0.029300 GGATGCACACACACACACAC 59.971 55.000 0.00 0.00 0.00 3.82 F
2264 2416 0.093875 CGCACGCACGCAACTAATAA 59.906 50.000 0.00 0.00 0.00 1.40 F
2802 3677 0.179181 CAACTTGATCGCAGCGCAAT 60.179 50.000 10.87 0.00 0.00 3.56 F
4068 5318 0.106167 AGGCGATCTGCTACACCCTA 60.106 55.000 8.94 0.00 45.43 3.53 F
4633 5936 1.315981 TTGAAACCTTGCGCACCACA 61.316 50.000 11.12 1.90 0.00 4.17 F
5237 7426 1.855360 GCTACATGAAGCTCGCTACAC 59.145 52.381 0.00 0.00 39.50 2.90 F
5677 7870 0.830648 TCCTATTTCTGCCACTCGGG 59.169 55.000 0.00 0.00 40.85 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2222 2360 0.029300 GTGTGTGTGTGTGTGCATCC 59.971 55.0 0.00 0.00 0.00 3.51 R
2245 2397 0.093875 TTATTAGTTGCGTGCGTGCG 59.906 50.0 0.00 0.00 37.81 5.34 R
3493 4376 0.045162 TTCCCCGTCCCTATTCCCTT 59.955 55.0 0.00 0.00 0.00 3.95 R
3732 4973 0.304705 CGTTTGATATGAGCGTGGGC 59.695 55.0 0.00 0.00 40.37 5.36 R
4641 5944 0.172352 CTGGAGTCCGACTCTCAAGC 59.828 60.0 24.45 10.73 44.46 4.01 R
5627 7820 0.178891 ATGGCCGATGAGGTAGGGAT 60.179 55.0 0.00 0.00 43.70 3.85 R
5641 7834 0.179092 GGAAGAATGCAAGCATGGCC 60.179 55.0 8.50 0.00 29.78 5.36 R
6170 8363 0.326595 TTGGCCAAGAACGCTATGGA 59.673 50.0 16.05 0.00 36.27 3.41 R
7278 9478 0.605319 CTTCGGTAGCTTGGCACCAA 60.605 55.0 1.46 1.46 32.26 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 0.179054 GGCTCCTATTCCCCGTTGTC 60.179 60.000 0.00 0.00 0.00 3.18
376 377 1.741525 GAAACCTTTGGCAGCAGCA 59.258 52.632 2.65 0.00 44.61 4.41
389 390 1.586303 GCAGCATCGTCATCGTCGA 60.586 57.895 0.00 0.00 41.45 4.20
390 391 0.936764 GCAGCATCGTCATCGTCGAT 60.937 55.000 0.75 0.75 46.70 3.59
397 398 2.282407 TCGTCATCGTCGATGTCCTTA 58.718 47.619 29.22 11.55 40.55 2.69
425 426 1.084289 GTTGATTGGTACCGGTGCTC 58.916 55.000 22.50 12.63 0.00 4.26
440 441 2.581354 CTCCGGAGCCTTGGAGTG 59.419 66.667 20.67 0.00 45.48 3.51
462 463 1.987855 TGGAAGATCTTCGGCGGGT 60.988 57.895 25.40 0.00 40.37 5.28
499 500 0.171903 TCTTCGTTTCCGTCGATCCC 59.828 55.000 0.00 0.00 37.18 3.85
514 515 0.680921 ATCCCCCGTTGTCAGCATTG 60.681 55.000 0.00 0.00 0.00 2.82
550 553 4.911514 TTCTCTTTCGTTTCTTTTGGGG 57.088 40.909 0.00 0.00 0.00 4.96
559 562 3.570550 CGTTTCTTTTGGGGGTGATTGTA 59.429 43.478 0.00 0.00 0.00 2.41
604 607 3.704800 TTGGATGTATCGGTTGGTTGA 57.295 42.857 0.00 0.00 0.00 3.18
611 614 6.238374 GGATGTATCGGTTGGTTGATTTGTAG 60.238 42.308 0.00 0.00 0.00 2.74
643 646 1.269723 GGAAACCCTTTTTCGGCAGAG 59.730 52.381 0.00 0.00 0.00 3.35
644 647 1.269723 GAAACCCTTTTTCGGCAGAGG 59.730 52.381 0.00 0.00 0.00 3.69
645 648 0.185175 AACCCTTTTTCGGCAGAGGT 59.815 50.000 0.00 0.00 0.00 3.85
646 649 0.185175 ACCCTTTTTCGGCAGAGGTT 59.815 50.000 0.00 0.00 0.00 3.50
647 650 0.598065 CCCTTTTTCGGCAGAGGTTG 59.402 55.000 0.00 0.00 0.00 3.77
648 651 1.318576 CCTTTTTCGGCAGAGGTTGT 58.681 50.000 0.00 0.00 0.00 3.32
649 652 2.500229 CCTTTTTCGGCAGAGGTTGTA 58.500 47.619 0.00 0.00 0.00 2.41
650 653 2.484264 CCTTTTTCGGCAGAGGTTGTAG 59.516 50.000 0.00 0.00 0.00 2.74
651 654 2.922740 TTTTCGGCAGAGGTTGTAGT 57.077 45.000 0.00 0.00 0.00 2.73
652 655 2.163818 TTTCGGCAGAGGTTGTAGTG 57.836 50.000 0.00 0.00 0.00 2.74
653 656 1.045407 TTCGGCAGAGGTTGTAGTGT 58.955 50.000 0.00 0.00 0.00 3.55
654 657 1.045407 TCGGCAGAGGTTGTAGTGTT 58.955 50.000 0.00 0.00 0.00 3.32
655 658 2.241160 TCGGCAGAGGTTGTAGTGTTA 58.759 47.619 0.00 0.00 0.00 2.41
656 659 2.829720 TCGGCAGAGGTTGTAGTGTTAT 59.170 45.455 0.00 0.00 0.00 1.89
657 660 3.259876 TCGGCAGAGGTTGTAGTGTTATT 59.740 43.478 0.00 0.00 0.00 1.40
658 661 4.000988 CGGCAGAGGTTGTAGTGTTATTT 58.999 43.478 0.00 0.00 0.00 1.40
659 662 4.142902 CGGCAGAGGTTGTAGTGTTATTTG 60.143 45.833 0.00 0.00 0.00 2.32
660 663 4.156008 GGCAGAGGTTGTAGTGTTATTTGG 59.844 45.833 0.00 0.00 0.00 3.28
661 664 5.001232 GCAGAGGTTGTAGTGTTATTTGGA 58.999 41.667 0.00 0.00 0.00 3.53
662 665 5.648092 GCAGAGGTTGTAGTGTTATTTGGAT 59.352 40.000 0.00 0.00 0.00 3.41
663 666 6.151144 GCAGAGGTTGTAGTGTTATTTGGATT 59.849 38.462 0.00 0.00 0.00 3.01
664 667 7.626452 GCAGAGGTTGTAGTGTTATTTGGATTC 60.626 40.741 0.00 0.00 0.00 2.52
665 668 7.607991 CAGAGGTTGTAGTGTTATTTGGATTCT 59.392 37.037 0.00 0.00 0.00 2.40
666 669 7.824779 AGAGGTTGTAGTGTTATTTGGATTCTC 59.175 37.037 0.00 0.00 0.00 2.87
667 670 6.884836 AGGTTGTAGTGTTATTTGGATTCTCC 59.115 38.462 0.00 0.00 36.96 3.71
668 671 6.095021 GGTTGTAGTGTTATTTGGATTCTCCC 59.905 42.308 0.00 0.00 35.03 4.30
669 672 6.381498 TGTAGTGTTATTTGGATTCTCCCA 57.619 37.500 0.00 0.00 35.03 4.37
670 673 6.969043 TGTAGTGTTATTTGGATTCTCCCAT 58.031 36.000 0.00 0.00 35.03 4.00
671 674 7.054124 TGTAGTGTTATTTGGATTCTCCCATC 58.946 38.462 0.00 0.00 35.03 3.51
672 675 6.332976 AGTGTTATTTGGATTCTCCCATCT 57.667 37.500 0.00 0.00 35.03 2.90
673 676 7.451731 AGTGTTATTTGGATTCTCCCATCTA 57.548 36.000 0.00 0.00 35.03 1.98
674 677 7.283329 AGTGTTATTTGGATTCTCCCATCTAC 58.717 38.462 0.00 0.00 35.03 2.59
675 678 7.127955 AGTGTTATTTGGATTCTCCCATCTACT 59.872 37.037 0.00 0.00 35.03 2.57
676 679 8.429641 GTGTTATTTGGATTCTCCCATCTACTA 58.570 37.037 0.00 0.00 35.03 1.82
677 680 8.651389 TGTTATTTGGATTCTCCCATCTACTAG 58.349 37.037 0.00 0.00 35.03 2.57
678 681 5.552870 TTTGGATTCTCCCATCTACTAGC 57.447 43.478 0.00 0.00 35.03 3.42
679 682 3.511477 TGGATTCTCCCATCTACTAGCC 58.489 50.000 0.00 0.00 35.03 3.93
680 683 2.835156 GGATTCTCCCATCTACTAGCCC 59.165 54.545 0.00 0.00 0.00 5.19
681 684 2.400467 TTCTCCCATCTACTAGCCCC 57.600 55.000 0.00 0.00 0.00 5.80
682 685 0.112606 TCTCCCATCTACTAGCCCCG 59.887 60.000 0.00 0.00 0.00 5.73
683 686 0.178958 CTCCCATCTACTAGCCCCGT 60.179 60.000 0.00 0.00 0.00 5.28
684 687 0.178970 TCCCATCTACTAGCCCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
685 688 1.524863 CCCATCTACTAGCCCCGTCG 61.525 65.000 0.00 0.00 0.00 5.12
686 689 0.822532 CCATCTACTAGCCCCGTCGT 60.823 60.000 0.00 0.00 0.00 4.34
687 690 1.030457 CATCTACTAGCCCCGTCGTT 58.970 55.000 0.00 0.00 0.00 3.85
688 691 1.407979 CATCTACTAGCCCCGTCGTTT 59.592 52.381 0.00 0.00 0.00 3.60
689 692 1.098050 TCTACTAGCCCCGTCGTTTC 58.902 55.000 0.00 0.00 0.00 2.78
690 693 0.813184 CTACTAGCCCCGTCGTTTCA 59.187 55.000 0.00 0.00 0.00 2.69
691 694 0.527565 TACTAGCCCCGTCGTTTCAC 59.472 55.000 0.00 0.00 0.00 3.18
692 695 1.290955 CTAGCCCCGTCGTTTCACA 59.709 57.895 0.00 0.00 0.00 3.58
693 696 1.005867 TAGCCCCGTCGTTTCACAC 60.006 57.895 0.00 0.00 0.00 3.82
694 697 1.466025 TAGCCCCGTCGTTTCACACT 61.466 55.000 0.00 0.00 0.00 3.55
695 698 1.890510 GCCCCGTCGTTTCACACTT 60.891 57.895 0.00 0.00 0.00 3.16
696 699 1.441732 GCCCCGTCGTTTCACACTTT 61.442 55.000 0.00 0.00 0.00 2.66
722 725 0.394899 CATTCCCTGGCTTCTCCCAC 60.395 60.000 0.00 0.00 0.00 4.61
730 733 3.339093 CTTCTCCCACCCACCCCC 61.339 72.222 0.00 0.00 0.00 5.40
744 747 4.349636 ACCCACCCCCTTTAATTTCTTTTG 59.650 41.667 0.00 0.00 0.00 2.44
745 748 4.349636 CCCACCCCCTTTAATTTCTTTTGT 59.650 41.667 0.00 0.00 0.00 2.83
752 755 7.375834 CCCCTTTAATTTCTTTTGTGTAGTCC 58.624 38.462 0.00 0.00 0.00 3.85
754 757 7.232737 CCCTTTAATTTCTTTTGTGTAGTCCCT 59.767 37.037 0.00 0.00 0.00 4.20
799 802 6.216251 CCCATATATATCCATCCATTCCCGAT 59.784 42.308 0.00 0.00 0.00 4.18
804 807 3.882102 TCCATCCATTCCCGATGATTT 57.118 42.857 0.00 0.00 39.64 2.17
808 811 4.217118 CCATCCATTCCCGATGATTTTCTC 59.783 45.833 0.00 0.00 39.64 2.87
865 868 4.349342 AGACCCTTCTTCATTGTCTCTGTT 59.651 41.667 0.00 0.00 30.81 3.16
869 872 6.043243 ACCCTTCTTCATTGTCTCTGTTTCTA 59.957 38.462 0.00 0.00 0.00 2.10
874 877 5.164620 TCATTGTCTCTGTTTCTATGCCA 57.835 39.130 0.00 0.00 0.00 4.92
932 941 2.182842 GCAGGAGCATAGGTTGGCG 61.183 63.158 0.00 0.00 41.58 5.69
937 946 0.532196 GAGCATAGGTTGGCGGGTAC 60.532 60.000 0.00 0.00 34.54 3.34
963 972 1.194772 GAAGCTTGCACAAGTACCGTC 59.805 52.381 2.10 0.60 40.45 4.79
966 975 1.069906 GCTTGCACAAGTACCGTCTTG 60.070 52.381 11.77 9.57 46.89 3.02
977 986 1.663702 CCGTCTTGGGACACACGTC 60.664 63.158 0.00 0.00 41.66 4.34
991 1000 3.744719 CGTCCGAGGAAGCACCGA 61.745 66.667 0.00 0.00 44.74 4.69
994 1003 1.906824 TCCGAGGAAGCACCGAAGT 60.907 57.895 0.00 0.00 44.74 3.01
1155 1173 0.982852 CCTCCAGGTGCACTATCCCA 60.983 60.000 17.98 0.00 0.00 4.37
1224 1242 4.332543 TCCACCGCCCTCTTCCCT 62.333 66.667 0.00 0.00 0.00 4.20
1311 1329 0.178932 CCCTCGTATGGATCCTGGGA 60.179 60.000 14.23 4.38 35.40 4.37
1567 1586 1.691976 TGGGACGTGAACTTCAGATGT 59.308 47.619 0.00 0.00 0.00 3.06
1584 1603 8.624367 TTCAGATGTTTAAAATTAGGAACGGA 57.376 30.769 0.00 0.00 0.00 4.69
1665 1690 4.057428 GTGCTCGGAGCTGACGGT 62.057 66.667 28.42 0.00 42.97 4.83
1763 1788 4.409570 ACGTACGTGTGTGCTTTCTATAG 58.590 43.478 22.14 0.00 0.00 1.31
1764 1789 4.083110 ACGTACGTGTGTGCTTTCTATAGT 60.083 41.667 22.14 0.00 0.00 2.12
1802 1827 6.217294 ACTAGCGTGCTTTCTATAGATTTCC 58.783 40.000 2.58 0.00 0.00 3.13
1862 1890 2.875933 TCGGACACAAGTTTTTAGCCTG 59.124 45.455 0.00 0.00 0.00 4.85
1867 1895 5.049612 GGACACAAGTTTTTAGCCTGTCTAC 60.050 44.000 0.00 0.00 0.00 2.59
2010 2082 4.322539 CACACTTGCATTGTGAAATCATCG 59.677 41.667 21.96 0.00 46.18 3.84
2140 2278 9.979578 AGTCTGCATTATAATTTGTTTTCAACA 57.020 25.926 0.00 0.00 39.73 3.33
2204 2342 4.556592 ACAAAAGCAATGGCCACATATT 57.443 36.364 8.16 0.00 42.56 1.28
2214 2352 3.738982 TGGCCACATATTCGTTATCTGG 58.261 45.455 0.00 0.00 31.37 3.86
2222 2360 9.574458 CCACATATTCGTTATCTGGATAGTTAG 57.426 37.037 0.00 0.00 30.05 2.34
2239 2391 1.877637 TAGGATGCACACACACACAC 58.122 50.000 0.00 0.00 0.00 3.82
2241 2393 0.029300 GGATGCACACACACACACAC 59.971 55.000 0.00 0.00 0.00 3.82
2242 2394 0.316114 GATGCACACACACACACACG 60.316 55.000 0.00 0.00 0.00 4.49
2243 2395 2.277247 GCACACACACACACACGC 60.277 61.111 0.00 0.00 0.00 5.34
2244 2396 3.033166 GCACACACACACACACGCA 62.033 57.895 0.00 0.00 0.00 5.24
2245 2397 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
2246 2398 2.021243 CACACACACACACGCACG 59.979 61.111 0.00 0.00 0.00 5.34
2248 2400 3.858989 CACACACACACGCACGCA 61.859 61.111 0.00 0.00 0.00 5.24
2249 2401 3.860125 ACACACACACGCACGCAC 61.860 61.111 0.00 0.00 0.00 5.34
2250 2402 4.918060 CACACACACGCACGCACG 62.918 66.667 0.00 0.00 39.50 5.34
2261 2413 2.962786 ACGCACGCACGCAACTAA 60.963 55.556 0.00 0.00 36.19 2.24
2262 2414 2.314647 ACGCACGCACGCAACTAAT 61.315 52.632 0.00 0.00 36.19 1.73
2263 2415 1.009903 ACGCACGCACGCAACTAATA 61.010 50.000 0.00 0.00 36.19 0.98
2264 2416 0.093875 CGCACGCACGCAACTAATAA 59.906 50.000 0.00 0.00 0.00 1.40
2265 2417 1.462705 CGCACGCACGCAACTAATAAA 60.463 47.619 0.00 0.00 0.00 1.40
2266 2418 2.576406 GCACGCACGCAACTAATAAAA 58.424 42.857 0.00 0.00 0.00 1.52
2360 2514 4.023980 TCTATAGGAGCAACCATATCCGG 58.976 47.826 0.00 0.00 42.04 5.14
2369 2523 2.618241 CAACCATATCCGGACCAACATG 59.382 50.000 6.12 5.59 0.00 3.21
2435 2589 0.875059 CTTCAGGAAGGAACCAACGC 59.125 55.000 1.01 0.00 34.87 4.84
2436 2590 0.181587 TTCAGGAAGGAACCAACGCA 59.818 50.000 0.00 0.00 0.00 5.24
2442 2596 1.734388 AAGGAACCAACGCACAAGCC 61.734 55.000 0.00 0.00 37.52 4.35
2443 2597 2.051345 GAACCAACGCACAAGCCG 60.051 61.111 0.00 0.00 37.52 5.52
2516 2670 1.541588 AGAAACAAGGCCGAGCAAATC 59.458 47.619 0.00 0.00 0.00 2.17
2527 2924 0.237235 GAGCAAATCCGAACAACGCA 59.763 50.000 0.00 0.00 41.07 5.24
2546 2943 3.060272 CGCATCCAACAAGATATCGACAC 60.060 47.826 0.00 0.00 0.00 3.67
2557 2954 6.035005 ACAAGATATCGACACAAGAAACATCG 59.965 38.462 0.00 0.00 0.00 3.84
2582 2979 5.883115 TCATTGCCGAATGTAACCAATAAGA 59.117 36.000 0.00 0.00 40.09 2.10
2603 3000 1.124780 TCAGACCTCGGGTTTTCACA 58.875 50.000 0.00 0.00 35.25 3.58
2605 3002 2.105821 TCAGACCTCGGGTTTTCACAAT 59.894 45.455 0.00 0.00 35.25 2.71
2607 3004 4.019681 TCAGACCTCGGGTTTTCACAATAT 60.020 41.667 0.00 0.00 35.25 1.28
2619 3016 6.019479 GGTTTTCACAATATAGCTCGAGACTG 60.019 42.308 18.75 5.53 0.00 3.51
2622 3019 4.276183 TCACAATATAGCTCGAGACTGGTC 59.724 45.833 18.75 0.00 0.00 4.02
2673 3070 2.690326 GTGACGCTCACACCACTTT 58.310 52.632 11.62 0.00 46.22 2.66
2674 3071 1.014352 GTGACGCTCACACCACTTTT 58.986 50.000 11.62 0.00 46.22 2.27
2765 3639 2.804856 GGCGCAACACCACAAACT 59.195 55.556 10.83 0.00 0.00 2.66
2785 3659 1.376553 TTGGATCCGATGTGCGCAA 60.377 52.632 14.00 2.60 39.11 4.85
2802 3677 0.179181 CAACTTGATCGCAGCGCAAT 60.179 50.000 10.87 0.00 0.00 3.56
2837 3712 1.454976 CCAGATCTGGGCCATGAGG 59.545 63.158 31.14 4.70 46.81 3.86
2866 3741 4.947147 GACGCAGCCCACCACCAA 62.947 66.667 0.00 0.00 0.00 3.67
2869 3744 2.837291 GCAGCCCACCACCAACAA 60.837 61.111 0.00 0.00 0.00 2.83
2875 3750 0.313672 CCCACCACCAACAATTGTCG 59.686 55.000 12.39 7.78 0.00 4.35
2877 3752 1.001815 CCACCACCAACAATTGTCGTC 60.002 52.381 12.39 0.00 0.00 4.20
2913 3788 3.622514 GAGCAGATCCACCGTCCT 58.377 61.111 0.00 0.00 0.00 3.85
2953 3830 3.357079 CAACTGCCCGACACCTGC 61.357 66.667 0.00 0.00 0.00 4.85
2981 3858 3.406361 CACTGCACGCGACACTCC 61.406 66.667 15.93 0.00 0.00 3.85
3010 3887 3.984193 GAGCACCTCCGCCAGCATT 62.984 63.158 0.00 0.00 0.00 3.56
3034 3911 3.716006 CCTGACGCACGTTGCCAG 61.716 66.667 0.00 0.22 41.12 4.85
3044 3921 2.521708 GTTGCCAGGCCACCTTGT 60.522 61.111 9.64 0.00 0.00 3.16
3057 3934 2.042831 CCTTGTGCTGCTGCCCTAC 61.043 63.158 13.47 5.39 38.71 3.18
3071 3948 2.044650 CTACGGACCGAGGGACCA 60.045 66.667 23.38 0.00 37.37 4.02
3084 3961 1.104630 GGGACCACCGTAAGAGAGAG 58.895 60.000 0.00 0.00 43.02 3.20
3089 3966 1.464734 CACCGTAAGAGAGAGAGCCA 58.535 55.000 0.00 0.00 43.02 4.75
3100 3977 3.226429 GAGAGCCACACCGCAGTCA 62.226 63.158 0.00 0.00 0.00 3.41
3118 3995 1.971695 AGCCGCACAAGCTTAACCC 60.972 57.895 0.00 0.00 37.24 4.11
3179 4056 4.410400 GGGTGGCTGCGCTAGGTT 62.410 66.667 9.73 0.00 0.00 3.50
3182 4059 1.090052 GGTGGCTGCGCTAGGTTAAG 61.090 60.000 9.73 0.00 0.00 1.85
3184 4061 0.611200 TGGCTGCGCTAGGTTAAGAA 59.389 50.000 9.73 0.00 0.00 2.52
3192 4069 2.418334 CGCTAGGTTAAGAAGACCACCC 60.418 54.545 0.00 0.00 39.71 4.61
3199 4076 0.252742 AAGAAGACCACCCCCGAGAT 60.253 55.000 0.00 0.00 0.00 2.75
3295 4174 1.896465 AGCCACAGGTCAGAACTACTC 59.104 52.381 0.00 0.00 0.00 2.59
3325 4204 7.170393 TGAAACATCATAGTATATCCCTCCG 57.830 40.000 0.00 0.00 0.00 4.63
3326 4205 6.724441 TGAAACATCATAGTATATCCCTCCGT 59.276 38.462 0.00 0.00 0.00 4.69
3327 4206 7.234782 TGAAACATCATAGTATATCCCTCCGTT 59.765 37.037 0.00 0.00 0.00 4.44
3328 4207 6.777213 ACATCATAGTATATCCCTCCGTTC 57.223 41.667 0.00 0.00 0.00 3.95
3329 4208 5.657302 ACATCATAGTATATCCCTCCGTTCC 59.343 44.000 0.00 0.00 0.00 3.62
3330 4209 5.265290 TCATAGTATATCCCTCCGTTCCA 57.735 43.478 0.00 0.00 0.00 3.53
3331 4210 5.647230 TCATAGTATATCCCTCCGTTCCAA 58.353 41.667 0.00 0.00 0.00 3.53
3332 4211 6.079336 TCATAGTATATCCCTCCGTTCCAAA 58.921 40.000 0.00 0.00 0.00 3.28
3333 4212 6.555738 TCATAGTATATCCCTCCGTTCCAAAA 59.444 38.462 0.00 0.00 0.00 2.44
3334 4213 5.906772 AGTATATCCCTCCGTTCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
3335 4214 8.537016 CATAGTATATCCCTCCGTTCCAAAATA 58.463 37.037 0.00 0.00 0.00 1.40
3336 4215 7.005709 AGTATATCCCTCCGTTCCAAAATAG 57.994 40.000 0.00 0.00 0.00 1.73
3337 4216 6.785963 AGTATATCCCTCCGTTCCAAAATAGA 59.214 38.462 0.00 0.00 0.00 1.98
3338 4217 6.704056 ATATCCCTCCGTTCCAAAATAGAT 57.296 37.500 0.00 0.00 0.00 1.98
3339 4218 4.150897 TCCCTCCGTTCCAAAATAGATG 57.849 45.455 0.00 0.00 0.00 2.90
3340 4219 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3341 4220 4.226394 TCCCTCCGTTCCAAAATAGATGAA 59.774 41.667 0.00 0.00 0.00 2.57
3342 4221 4.335594 CCCTCCGTTCCAAAATAGATGAAC 59.664 45.833 0.00 0.00 35.03 3.18
3343 4222 4.335594 CCTCCGTTCCAAAATAGATGAACC 59.664 45.833 0.00 0.00 34.93 3.62
3344 4223 4.912586 TCCGTTCCAAAATAGATGAACCA 58.087 39.130 0.00 0.00 34.93 3.67
3345 4224 5.317808 TCCGTTCCAAAATAGATGAACCAA 58.682 37.500 0.00 0.00 34.93 3.67
3346 4225 5.182380 TCCGTTCCAAAATAGATGAACCAAC 59.818 40.000 0.00 0.00 34.93 3.77
3347 4226 5.183140 CCGTTCCAAAATAGATGAACCAACT 59.817 40.000 0.00 0.00 34.93 3.16
3348 4227 6.294508 CCGTTCCAAAATAGATGAACCAACTT 60.295 38.462 0.00 0.00 34.93 2.66
3349 4228 7.145323 CGTTCCAAAATAGATGAACCAACTTT 58.855 34.615 0.00 0.00 34.93 2.66
3350 4229 7.114811 CGTTCCAAAATAGATGAACCAACTTTG 59.885 37.037 0.00 0.00 34.93 2.77
3351 4230 7.595819 TCCAAAATAGATGAACCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
3352 4231 8.698973 TCCAAAATAGATGAACCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
3353 4232 8.573035 TCCAAAATAGATGAACCAACTTTGTAC 58.427 33.333 0.00 0.00 0.00 2.90
3354 4233 8.576442 CCAAAATAGATGAACCAACTTTGTACT 58.424 33.333 0.00 0.00 0.00 2.73
3380 4259 7.506328 AAATTAGTACAAAGTTGAGTCACCC 57.494 36.000 0.00 0.00 0.00 4.61
3381 4260 5.617528 TTAGTACAAAGTTGAGTCACCCA 57.382 39.130 0.00 0.00 0.00 4.51
3382 4261 4.706842 AGTACAAAGTTGAGTCACCCAT 57.293 40.909 0.00 0.00 0.00 4.00
3383 4262 5.048846 AGTACAAAGTTGAGTCACCCATT 57.951 39.130 0.00 0.00 0.00 3.16
3384 4263 5.445964 AGTACAAAGTTGAGTCACCCATTT 58.554 37.500 0.00 0.00 0.00 2.32
3385 4264 5.891551 AGTACAAAGTTGAGTCACCCATTTT 59.108 36.000 0.00 0.00 0.00 1.82
3386 4265 5.009854 ACAAAGTTGAGTCACCCATTTTG 57.990 39.130 8.80 8.80 0.00 2.44
3387 4266 4.141959 ACAAAGTTGAGTCACCCATTTTGG 60.142 41.667 12.94 0.00 37.25 3.28
3388 4267 3.593442 AGTTGAGTCACCCATTTTGGA 57.407 42.857 0.00 0.00 40.96 3.53
3389 4268 3.909732 AGTTGAGTCACCCATTTTGGAA 58.090 40.909 0.00 0.00 40.96 3.53
3390 4269 3.636764 AGTTGAGTCACCCATTTTGGAAC 59.363 43.478 0.00 0.00 40.96 3.62
3391 4270 2.226330 TGAGTCACCCATTTTGGAACG 58.774 47.619 0.00 0.00 40.96 3.95
3392 4271 1.539827 GAGTCACCCATTTTGGAACGG 59.460 52.381 0.00 0.00 40.96 4.44
3393 4272 1.144093 AGTCACCCATTTTGGAACGGA 59.856 47.619 0.00 0.00 40.96 4.69
3394 4273 1.539827 GTCACCCATTTTGGAACGGAG 59.460 52.381 0.00 0.00 40.96 4.63
3395 4274 0.887933 CACCCATTTTGGAACGGAGG 59.112 55.000 0.00 0.00 40.96 4.30
3396 4275 0.481128 ACCCATTTTGGAACGGAGGT 59.519 50.000 0.00 0.00 40.96 3.85
3397 4276 1.706305 ACCCATTTTGGAACGGAGGTA 59.294 47.619 0.00 0.00 40.96 3.08
3398 4277 2.290705 ACCCATTTTGGAACGGAGGTAG 60.291 50.000 0.00 0.00 40.96 3.18
3399 4278 2.290705 CCCATTTTGGAACGGAGGTAGT 60.291 50.000 0.00 0.00 40.96 2.73
3400 4279 3.054948 CCCATTTTGGAACGGAGGTAGTA 60.055 47.826 0.00 0.00 40.96 1.82
3407 4286 5.524971 TGGAACGGAGGTAGTACATAATG 57.475 43.478 2.06 0.00 0.00 1.90
3431 4314 6.712095 TGAAGCTTACTAATGATAATGCCAGG 59.288 38.462 0.00 0.00 0.00 4.45
3493 4376 7.450124 TTCGCAACCCACAACTATTTATTTA 57.550 32.000 0.00 0.00 0.00 1.40
3535 4418 1.180029 TGGAACCTACCAGTAGACGC 58.820 55.000 6.39 0.00 35.21 5.19
3536 4419 1.180029 GGAACCTACCAGTAGACGCA 58.820 55.000 6.39 0.00 35.21 5.24
3538 4421 0.893447 AACCTACCAGTAGACGCACC 59.107 55.000 6.39 0.00 35.21 5.01
3539 4422 0.251474 ACCTACCAGTAGACGCACCA 60.251 55.000 6.39 0.00 35.21 4.17
3542 4425 0.968901 TACCAGTAGACGCACCAGGG 60.969 60.000 0.00 0.00 0.00 4.45
3732 4973 5.106948 ACAAAAGAATACTCACGACATGCAG 60.107 40.000 0.00 0.00 0.00 4.41
3800 5041 0.179000 GGGATGGCGTGATCTTCAGT 59.821 55.000 0.00 0.00 0.00 3.41
3817 5058 1.388093 CAGTGTCGTCTCTGCAAATCG 59.612 52.381 0.00 0.00 0.00 3.34
3828 5069 1.165284 TGCAAATCGTCTGTGCAGCA 61.165 50.000 0.00 0.00 43.09 4.41
3830 5071 1.401931 GCAAATCGTCTGTGCAGCATT 60.402 47.619 0.00 0.00 38.19 3.56
3842 5083 1.330306 GCAGCATTGTGTGTTTAGCG 58.670 50.000 0.00 0.00 0.00 4.26
3850 5091 5.726688 GCATTGTGTGTTTAGCGTGTATAGG 60.727 44.000 0.00 0.00 0.00 2.57
3852 5093 5.333299 TGTGTGTTTAGCGTGTATAGGAT 57.667 39.130 0.00 0.00 0.00 3.24
3858 5099 5.221130 GTTTAGCGTGTATAGGATGACTCC 58.779 45.833 0.00 0.00 42.43 3.85
3900 5141 1.545428 GGCGCAGATCCCCAAATGATA 60.545 52.381 10.83 0.00 0.00 2.15
3907 5148 6.207417 CGCAGATCCCCAAATGATATTTTAGT 59.793 38.462 0.00 0.00 0.00 2.24
3909 5150 7.869429 GCAGATCCCCAAATGATATTTTAGTTG 59.131 37.037 0.00 0.00 0.00 3.16
3911 5152 8.288812 AGATCCCCAAATGATATTTTAGTTGGA 58.711 33.333 8.38 0.00 38.20 3.53
3971 5212 5.199024 AGATGCAGAGTTATAGTCAGCTG 57.801 43.478 7.63 7.63 32.13 4.24
3991 5232 2.017049 GGCAAAAGCTCACCGATACAT 58.983 47.619 0.00 0.00 0.00 2.29
3998 5239 1.609061 GCTCACCGATACATGATGGGG 60.609 57.143 0.00 0.00 37.74 4.96
3999 5240 1.970640 CTCACCGATACATGATGGGGA 59.029 52.381 0.00 0.69 37.74 4.81
4018 5259 3.367395 GGGAAATTCTGTAGCCAACAAGC 60.367 47.826 0.00 0.00 37.74 4.01
4029 5270 1.574428 CAACAAGCCGTGCTACACC 59.426 57.895 0.00 0.00 38.25 4.16
4063 5313 2.501128 GCCAGGCGATCTGCTACA 59.499 61.111 0.00 0.00 45.43 2.74
4065 5315 1.227380 CCAGGCGATCTGCTACACC 60.227 63.158 8.94 0.00 45.43 4.16
4066 5316 1.227380 CAGGCGATCTGCTACACCC 60.227 63.158 8.94 0.00 45.43 4.61
4068 5318 0.106167 AGGCGATCTGCTACACCCTA 60.106 55.000 8.94 0.00 45.43 3.53
4100 5399 5.421056 TCTCCGTGACTAAATGACCATAAGT 59.579 40.000 0.00 0.00 0.00 2.24
4101 5400 6.045072 TCCGTGACTAAATGACCATAAGTT 57.955 37.500 0.00 0.00 0.00 2.66
4124 5423 5.718146 TGATCGATCAAGAATATCTGAGGC 58.282 41.667 25.44 0.00 33.08 4.70
4238 5537 2.683211 AGTTCCACTTCAAGGGCATT 57.317 45.000 0.00 0.00 0.00 3.56
4288 5589 2.691526 GCAATGATCAAGCTTCCATCCA 59.308 45.455 14.29 0.00 0.00 3.41
4316 5617 3.637273 GACCAGCCCTGAACCCGT 61.637 66.667 0.00 0.00 0.00 5.28
4427 5730 4.853924 TGTTCTTGGATTTGCTTCCTTC 57.146 40.909 3.20 0.00 36.68 3.46
4458 5761 1.891178 TTGCGATACACTTCGAGACG 58.109 50.000 0.00 0.00 41.62 4.18
4500 5803 4.600062 CCTTCCTTAGCAAAACTATGGGT 58.400 43.478 5.18 0.00 43.39 4.51
4525 5828 5.053811 ACATTATTATCCGAATGTCGCACA 58.946 37.500 0.00 0.00 41.35 4.57
4575 5878 6.989155 TTCTAACAGTTCCTTCACCTCTTA 57.011 37.500 0.00 0.00 0.00 2.10
4591 5894 5.710099 CACCTCTTACACAACCATACCATTT 59.290 40.000 0.00 0.00 0.00 2.32
4602 5905 3.956199 ACCATACCATTTGCCAAGAGATG 59.044 43.478 0.00 0.00 0.00 2.90
4633 5936 1.315981 TTGAAACCTTGCGCACCACA 61.316 50.000 11.12 1.90 0.00 4.17
4635 5938 2.677573 GAAACCTTGCGCACCACACC 62.678 60.000 11.12 0.00 0.00 4.16
4636 5939 3.714487 AACCTTGCGCACCACACCT 62.714 57.895 11.12 0.00 0.00 4.00
4637 5940 2.906897 CCTTGCGCACCACACCTT 60.907 61.111 11.12 0.00 0.00 3.50
4638 5941 2.332514 CTTGCGCACCACACCTTG 59.667 61.111 11.12 0.00 0.00 3.61
4639 5942 2.124529 TTGCGCACCACACCTTGA 60.125 55.556 11.12 0.00 0.00 3.02
4640 5943 2.121564 CTTGCGCACCACACCTTGAG 62.122 60.000 11.12 0.00 0.00 3.02
4641 5944 3.357079 GCGCACCACACCTTGAGG 61.357 66.667 0.30 0.00 42.17 3.86
4727 6030 3.019564 AGAGCCAACATGTATTTCCAGC 58.980 45.455 0.00 0.00 0.00 4.85
4747 6050 2.292292 GCGACACAACCCACAACTAAAT 59.708 45.455 0.00 0.00 0.00 1.40
4808 6111 6.347079 GCAAAACATCATGTGTGGAAAGATTG 60.347 38.462 0.00 0.00 41.14 2.67
4811 6114 7.943079 AACATCATGTGTGGAAAGATTGATA 57.057 32.000 0.00 0.00 41.14 2.15
4842 6145 7.787904 AGGGTGTACAAAGGTAGATCATATGTA 59.212 37.037 0.00 0.00 0.00 2.29
4899 6202 9.780186 AAAAGTTAAGTTACAGCTAGACTTGAT 57.220 29.630 15.09 2.94 35.43 2.57
4900 6203 9.780186 AAAGTTAAGTTACAGCTAGACTTGATT 57.220 29.630 15.09 5.04 35.43 2.57
4902 6205 9.425577 AGTTAAGTTACAGCTAGACTTGATTTC 57.574 33.333 15.09 1.25 35.43 2.17
4904 6207 4.865365 AGTTACAGCTAGACTTGATTTCGC 59.135 41.667 0.00 0.00 0.00 4.70
4906 6209 3.866651 ACAGCTAGACTTGATTTCGCAT 58.133 40.909 0.00 0.00 0.00 4.73
4907 6210 3.620374 ACAGCTAGACTTGATTTCGCATG 59.380 43.478 0.00 0.00 0.00 4.06
4908 6211 3.002042 CAGCTAGACTTGATTTCGCATGG 59.998 47.826 0.00 0.00 0.00 3.66
4910 6213 4.119862 GCTAGACTTGATTTCGCATGGTA 58.880 43.478 0.00 0.00 0.00 3.25
4911 6214 4.025647 GCTAGACTTGATTTCGCATGGTAC 60.026 45.833 0.00 0.00 0.00 3.34
4936 7112 2.906389 GTGTAGATAGGGCATGGATGGA 59.094 50.000 0.00 0.00 0.00 3.41
4957 7133 4.854291 GGATCGAAATGCTAGATCGTACTG 59.146 45.833 0.00 0.00 41.06 2.74
5060 7245 5.245075 TGGTTTCTCTTTGTTGGACAGTTTT 59.755 36.000 0.00 0.00 0.00 2.43
5153 7340 9.929722 AAATGCATGTATATGTGTTTACTTACG 57.070 29.630 0.00 0.00 36.65 3.18
5160 7347 9.454585 TGTATATGTGTTTACTTACGAGTATGC 57.545 33.333 0.00 0.00 38.14 3.14
5167 7354 3.703286 ACTTACGAGTATGCGTGCATA 57.297 42.857 10.37 10.37 45.23 3.14
5168 7355 4.238761 ACTTACGAGTATGCGTGCATAT 57.761 40.909 16.79 7.07 45.23 1.78
5173 7360 8.833493 ACTTACGAGTATGCGTGCATATATATA 58.167 33.333 16.79 6.36 45.23 0.86
5237 7426 1.855360 GCTACATGAAGCTCGCTACAC 59.145 52.381 0.00 0.00 39.50 2.90
5287 7476 8.132995 AGAAAATTCCAGTTGGTTAAAGTTACG 58.867 33.333 0.00 0.00 36.34 3.18
5293 7482 7.444299 TCCAGTTGGTTAAAGTTACGTCTTAT 58.556 34.615 0.00 0.00 36.34 1.73
5300 7489 9.979578 TGGTTAAAGTTACGTCTTATAAACTGA 57.020 29.630 0.00 0.00 32.69 3.41
5388 7577 9.573133 AAATTGAGAAAATATAAGTTGCGAAGG 57.427 29.630 0.00 0.00 0.00 3.46
5429 7618 3.423539 AGGCTCATAGTTTGCAGACAA 57.576 42.857 10.36 0.00 0.00 3.18
5431 7620 2.813754 GGCTCATAGTTTGCAGACAACA 59.186 45.455 10.36 0.00 34.87 3.33
5478 7671 7.859325 TTTTGCTTTTCAAGTCAGTACTAGT 57.141 32.000 0.00 0.00 35.84 2.57
5483 7676 6.074249 GCTTTTCAAGTCAGTACTAGTGTGTC 60.074 42.308 5.39 1.14 33.75 3.67
5596 7789 2.042843 CAGAGGTACCCGAGGCCT 60.043 66.667 3.86 3.86 34.93 5.19
5641 7834 1.001406 GCCTTCATCCCTACCTCATCG 59.999 57.143 0.00 0.00 0.00 3.84
5662 7855 2.026641 GCCATGCTTGCATTCTTCCTA 58.973 47.619 5.24 0.00 0.00 2.94
5677 7870 0.830648 TCCTATTTCTGCCACTCGGG 59.169 55.000 0.00 0.00 40.85 5.14
5789 7982 4.135153 CCTCTGGGTGTCGCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
5824 8017 1.068352 AGCCCAGGGGAGTCTTGTTT 61.068 55.000 7.91 0.00 37.50 2.83
5845 8038 1.592131 GTGCACACACCGGACGTTA 60.592 57.895 13.17 0.00 41.21 3.18
5846 8039 1.592131 TGCACACACCGGACGTTAC 60.592 57.895 9.46 0.00 0.00 2.50
5868 8061 2.172483 GACCCAGTCATGCTCACCGT 62.172 60.000 0.00 0.00 32.09 4.83
5896 8089 0.892358 AGAAGCCCGTGTCGACTGTA 60.892 55.000 17.92 0.00 0.00 2.74
5903 8096 3.113322 CCCGTGTCGACTGTAACATATG 58.887 50.000 17.92 0.00 0.00 1.78
5920 8113 1.025812 ATGGTCTAAGCCGTCTCTCG 58.974 55.000 0.00 0.00 39.52 4.04
5932 8125 1.107114 GTCTCTCGGAGATCTTGGCA 58.893 55.000 8.39 0.00 40.98 4.92
6083 8276 3.050275 GCCCGCTTTTCGCTGAGT 61.050 61.111 0.00 0.00 36.73 3.41
6127 8320 1.086067 CGATGGATGCGCAAGTGACT 61.086 55.000 17.11 0.00 41.68 3.41
6170 8363 1.367840 GGACACAAGTGGCTCGACT 59.632 57.895 5.96 0.00 39.02 4.18
6271 8464 0.326927 GGGGAAGGATCGGTGTTGAA 59.673 55.000 0.00 0.00 0.00 2.69
6284 8477 1.748493 GTGTTGAAGTGGCAAACTGGA 59.252 47.619 0.00 0.00 39.81 3.86
6394 8587 0.991146 TGGTCTCCAATTAGCAGCCA 59.009 50.000 0.00 0.00 0.00 4.75
6398 8591 3.370527 GGTCTCCAATTAGCAGCCAAGTA 60.371 47.826 0.00 0.00 0.00 2.24
6405 8598 5.807011 CCAATTAGCAGCCAAGTATGTTTTC 59.193 40.000 0.00 0.00 0.00 2.29
6409 8602 2.030007 GCAGCCAAGTATGTTTTCTGCA 60.030 45.455 6.46 0.00 43.32 4.41
6430 8623 4.733230 GCAAATGCATGCGTCCTGTAATTA 60.733 41.667 13.95 0.00 41.59 1.40
6464 8657 0.953471 TAACGCACTGTGCATGGACC 60.953 55.000 29.86 0.00 45.36 4.46
6465 8658 2.359107 CGCACTGTGCATGGACCT 60.359 61.111 29.86 0.00 45.36 3.85
6471 8664 1.064463 ACTGTGCATGGACCTAATGGG 60.064 52.381 15.34 0.00 41.89 4.00
6492 8688 8.667076 ATGGGTCTTTTGATTTTTCTTTTCAG 57.333 30.769 0.00 0.00 0.00 3.02
6500 8696 7.538303 TTGATTTTTCTTTTCAGTTTGCTCC 57.462 32.000 0.00 0.00 0.00 4.70
6550 8746 4.789012 AGTCAATAAGCACATGTTTGGG 57.211 40.909 0.00 0.00 0.00 4.12
6581 8777 6.060788 CCCTTTTTCAAATGGATGTTTGGAA 58.939 36.000 5.90 0.00 39.10 3.53
6582 8778 6.545298 CCCTTTTTCAAATGGATGTTTGGAAA 59.455 34.615 5.90 2.57 42.09 3.13
6662 8859 4.811555 TTGTGATGAAGGAACGTCTTTG 57.188 40.909 0.00 0.00 37.81 2.77
6689 8886 3.387962 TGCCCTCACATAAGGAGAATCT 58.612 45.455 0.00 0.00 38.87 2.40
6720 8917 0.311790 CATGCGGTGGGTATGCAATC 59.688 55.000 0.00 0.00 42.65 2.67
6758 8956 4.692523 AACAAGGGGAAGGGATTAATGT 57.307 40.909 0.00 0.00 0.00 2.71
6785 8983 5.838521 CCCAAGGTTGGCCTAATTATAACAT 59.161 40.000 3.32 0.00 46.33 2.71
6858 9058 7.417342 GCAAACATGCCCTCCTAATTTACATTA 60.417 37.037 0.00 0.00 0.00 1.90
6864 9064 8.506196 TGCCCTCCTAATTTACATTATAGTCT 57.494 34.615 0.00 0.00 0.00 3.24
6905 9105 2.922283 AGACAAAGGACCCTGGATCAAT 59.078 45.455 0.00 0.00 0.00 2.57
6916 9116 0.744874 TGGATCAATCGACGACCTCC 59.255 55.000 0.00 4.85 0.00 4.30
6950 9150 0.897863 CCACCATCTCCGGCCAAAAA 60.898 55.000 2.24 0.00 0.00 1.94
7016 9216 4.819082 CGAGGGCGTCGGAAATAA 57.181 55.556 20.92 0.00 45.58 1.40
7039 9239 1.004044 AGCAAATCCACCAGAGGACAG 59.996 52.381 0.00 0.00 41.30 3.51
7077 9277 1.336332 CCTTGTCTCTCACTGGACACG 60.336 57.143 0.00 0.00 41.36 4.49
7115 9315 1.004080 GCTCCAGCTGCAGAGTTCA 60.004 57.895 20.43 0.00 38.21 3.18
7215 9415 1.544314 GGATCCACTCCTTGCCATAGC 60.544 57.143 6.95 0.00 41.29 2.97
7216 9416 4.141467 GGATCCACTCCTTGCCATAGCA 62.141 54.545 6.95 0.00 43.58 3.49
7382 9583 0.249120 CTCCAGCCGACCATAACACA 59.751 55.000 0.00 0.00 0.00 3.72
7383 9584 0.036765 TCCAGCCGACCATAACACAC 60.037 55.000 0.00 0.00 0.00 3.82
7384 9585 0.036388 CCAGCCGACCATAACACACT 60.036 55.000 0.00 0.00 0.00 3.55
7385 9586 1.206132 CCAGCCGACCATAACACACTA 59.794 52.381 0.00 0.00 0.00 2.74
7386 9587 2.540515 CAGCCGACCATAACACACTAG 58.459 52.381 0.00 0.00 0.00 2.57
7387 9588 2.094182 CAGCCGACCATAACACACTAGT 60.094 50.000 0.00 0.00 0.00 2.57
7388 9589 3.129813 CAGCCGACCATAACACACTAGTA 59.870 47.826 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.356124 ATAGCAGGAGCATACCAGGG 58.644 55.000 0.00 0.00 45.49 4.45
364 365 0.961857 ATGACGATGCTGCTGCCAAA 60.962 50.000 13.47 0.00 38.71 3.28
376 377 8.916945 CCAATAAGGACATCGACGATGACGAT 62.917 46.154 37.26 25.32 44.75 3.73
389 390 4.927267 TCAACACCTCCAATAAGGACAT 57.073 40.909 0.00 0.00 43.07 3.06
390 391 4.927267 ATCAACACCTCCAATAAGGACA 57.073 40.909 0.00 0.00 43.07 4.02
397 398 3.697166 GGTACCAATCAACACCTCCAAT 58.303 45.455 7.15 0.00 0.00 3.16
425 426 2.046892 CACACTCCAAGGCTCCGG 60.047 66.667 0.00 0.00 0.00 5.14
439 440 0.036388 GCCGAAGATCTTCCACCACA 60.036 55.000 26.08 0.00 36.27 4.17
440 441 1.084370 CGCCGAAGATCTTCCACCAC 61.084 60.000 26.08 12.19 36.27 4.16
462 463 0.880278 GAAGCTTCACGACCACTGCA 60.880 55.000 21.67 0.00 0.00 4.41
499 500 0.667993 AACACAATGCTGACAACGGG 59.332 50.000 0.00 0.00 0.00 5.28
514 515 5.960105 CGAAAGAGAAACAACAAGAGAACAC 59.040 40.000 0.00 0.00 0.00 3.32
550 553 1.693083 GCGGACGCAGTACAATCACC 61.693 60.000 12.31 0.00 45.67 4.02
604 607 4.370094 TCCCCCGTTTTGTACTACAAAT 57.630 40.909 13.88 0.00 46.17 2.32
611 614 0.961019 GGGTTTCCCCCGTTTTGTAC 59.039 55.000 0.00 0.00 45.80 2.90
660 663 2.835156 GGGGCTAGTAGATGGGAGAATC 59.165 54.545 0.00 0.00 0.00 2.52
661 664 2.823535 CGGGGCTAGTAGATGGGAGAAT 60.824 54.545 0.00 0.00 0.00 2.40
662 665 1.480683 CGGGGCTAGTAGATGGGAGAA 60.481 57.143 0.00 0.00 0.00 2.87
663 666 0.112606 CGGGGCTAGTAGATGGGAGA 59.887 60.000 0.00 0.00 0.00 3.71
664 667 0.178958 ACGGGGCTAGTAGATGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
665 668 0.178970 GACGGGGCTAGTAGATGGGA 60.179 60.000 0.00 0.00 0.00 4.37
666 669 1.524863 CGACGGGGCTAGTAGATGGG 61.525 65.000 0.00 0.00 0.00 4.00
667 670 0.822532 ACGACGGGGCTAGTAGATGG 60.823 60.000 0.00 0.00 0.00 3.51
668 671 1.030457 AACGACGGGGCTAGTAGATG 58.970 55.000 0.00 0.00 0.00 2.90
669 672 1.680207 GAAACGACGGGGCTAGTAGAT 59.320 52.381 0.00 0.00 0.00 1.98
670 673 1.098050 GAAACGACGGGGCTAGTAGA 58.902 55.000 0.00 0.00 0.00 2.59
671 674 0.813184 TGAAACGACGGGGCTAGTAG 59.187 55.000 0.00 0.00 0.00 2.57
672 675 0.527565 GTGAAACGACGGGGCTAGTA 59.472 55.000 0.00 0.00 0.00 1.82
673 676 1.291272 GTGAAACGACGGGGCTAGT 59.709 57.895 0.00 0.00 0.00 2.57
674 677 1.012486 GTGTGAAACGACGGGGCTAG 61.012 60.000 0.00 0.00 42.39 3.42
675 678 1.005867 GTGTGAAACGACGGGGCTA 60.006 57.895 0.00 0.00 42.39 3.93
676 679 2.280592 GTGTGAAACGACGGGGCT 60.281 61.111 0.00 0.00 42.39 5.19
677 680 1.441732 AAAGTGTGAAACGACGGGGC 61.442 55.000 0.00 0.00 42.39 5.80
678 681 0.584876 GAAAGTGTGAAACGACGGGG 59.415 55.000 0.00 0.00 42.39 5.73
679 682 1.260561 CTGAAAGTGTGAAACGACGGG 59.739 52.381 0.00 0.00 42.39 5.28
680 683 1.260561 CCTGAAAGTGTGAAACGACGG 59.739 52.381 0.00 0.00 42.39 4.79
681 684 2.034001 GTCCTGAAAGTGTGAAACGACG 60.034 50.000 0.00 0.00 42.39 5.12
682 685 2.287103 GGTCCTGAAAGTGTGAAACGAC 59.713 50.000 0.00 0.00 42.39 4.34
683 686 2.093394 TGGTCCTGAAAGTGTGAAACGA 60.093 45.455 0.00 0.00 42.39 3.85
684 687 2.285083 TGGTCCTGAAAGTGTGAAACG 58.715 47.619 0.00 0.00 42.39 3.60
685 688 4.261614 GGAATGGTCCTGAAAGTGTGAAAC 60.262 45.833 0.00 0.00 41.24 2.78
686 689 3.888930 GGAATGGTCCTGAAAGTGTGAAA 59.111 43.478 0.00 0.00 41.24 2.69
687 690 3.486383 GGAATGGTCCTGAAAGTGTGAA 58.514 45.455 0.00 0.00 41.24 3.18
688 691 2.224769 GGGAATGGTCCTGAAAGTGTGA 60.225 50.000 0.00 0.00 44.28 3.58
689 692 2.162681 GGGAATGGTCCTGAAAGTGTG 58.837 52.381 0.00 0.00 44.28 3.82
690 693 2.065799 AGGGAATGGTCCTGAAAGTGT 58.934 47.619 0.00 0.00 44.28 3.55
691 694 2.887151 AGGGAATGGTCCTGAAAGTG 57.113 50.000 0.00 0.00 44.28 3.16
722 725 4.349636 ACAAAAGAAATTAAAGGGGGTGGG 59.650 41.667 0.00 0.00 0.00 4.61
744 747 0.606604 TGCGAGGAAAGGGACTACAC 59.393 55.000 0.00 0.00 38.49 2.90
745 748 0.606604 GTGCGAGGAAAGGGACTACA 59.393 55.000 0.00 0.00 38.49 2.74
752 755 2.815647 GGAGCGTGCGAGGAAAGG 60.816 66.667 0.00 0.00 0.00 3.11
754 757 4.388499 GGGGAGCGTGCGAGGAAA 62.388 66.667 0.00 0.00 0.00 3.13
799 802 4.023536 GGGTGCGTTTTGTAGAGAAAATCA 60.024 41.667 0.00 0.00 0.00 2.57
804 807 1.504359 CGGGTGCGTTTTGTAGAGAA 58.496 50.000 0.00 0.00 0.00 2.87
808 811 1.908066 GAGGCGGGTGCGTTTTGTAG 61.908 60.000 0.00 0.00 44.10 2.74
843 846 4.278975 ACAGAGACAATGAAGAAGGGTC 57.721 45.455 0.00 0.00 0.00 4.46
865 868 3.568007 GGTGAAGTGTTTGTGGCATAGAA 59.432 43.478 0.00 0.00 0.00 2.10
869 872 1.774110 TGGTGAAGTGTTTGTGGCAT 58.226 45.000 0.00 0.00 0.00 4.40
932 941 2.683362 GTGCAAGCTTCAATAGGTACCC 59.317 50.000 8.74 0.00 33.29 3.69
937 946 4.142600 GGTACTTGTGCAAGCTTCAATAGG 60.143 45.833 11.43 0.00 41.99 2.57
940 949 2.226437 CGGTACTTGTGCAAGCTTCAAT 59.774 45.455 11.43 0.00 41.99 2.57
941 950 1.601903 CGGTACTTGTGCAAGCTTCAA 59.398 47.619 11.43 0.00 41.99 2.69
968 977 1.733399 GCTTCCTCGGACGTGTGTC 60.733 63.158 0.00 0.00 44.72 3.67
971 980 2.338984 GTGCTTCCTCGGACGTGT 59.661 61.111 0.00 0.00 0.00 4.49
972 981 2.432628 GGTGCTTCCTCGGACGTG 60.433 66.667 0.00 0.00 0.00 4.49
977 986 0.179134 CTACTTCGGTGCTTCCTCGG 60.179 60.000 0.00 0.00 0.00 4.63
982 991 2.482142 CCATCTCCTACTTCGGTGCTTC 60.482 54.545 0.00 0.00 0.00 3.86
1091 1100 1.468736 CGCAGGAGTTACGGTAGTTCC 60.469 57.143 10.41 10.41 0.00 3.62
1155 1173 3.681835 GTCCTATCGCCGGCGGAT 61.682 66.667 44.95 35.20 40.25 4.18
1176 1194 2.050351 CCGTCGAAGTCGCACACT 60.050 61.111 0.00 0.00 37.81 3.55
1401 1420 3.073798 TCTCCATGTAGAACTTGGGCAAA 59.926 43.478 10.92 0.00 42.02 3.68
1464 1483 2.852075 ACGGCCACCTTCCTTCCA 60.852 61.111 2.24 0.00 0.00 3.53
1465 1484 2.359975 CACGGCCACCTTCCTTCC 60.360 66.667 2.24 0.00 0.00 3.46
1467 1486 2.430367 GTCACGGCCACCTTCCTT 59.570 61.111 2.24 0.00 0.00 3.36
1548 1567 2.457366 ACATCTGAAGTTCACGTCCC 57.543 50.000 0.08 0.00 0.00 4.46
1551 1570 9.878599 CTAATTTTAAACATCTGAAGTTCACGT 57.121 29.630 0.08 0.00 0.00 4.49
1567 1586 8.570068 AAGTAGCATCCGTTCCTAATTTTAAA 57.430 30.769 0.00 0.00 0.00 1.52
1579 1598 0.108329 CCGGTGAAGTAGCATCCGTT 60.108 55.000 0.00 0.00 39.62 4.44
1584 1603 0.464452 GTAGCCCGGTGAAGTAGCAT 59.536 55.000 0.00 0.00 0.00 3.79
1643 1668 3.073735 CAGCTCCGAGCACCTCCT 61.074 66.667 22.29 0.00 45.56 3.69
1763 1788 7.891782 AGCACGCTAGTTTTTAAAAGAAAAAC 58.108 30.769 14.75 14.75 45.51 2.43
1764 1789 8.468720 AAGCACGCTAGTTTTTAAAAGAAAAA 57.531 26.923 0.14 0.00 30.95 1.94
1776 1801 7.224949 GGAAATCTATAGAAAGCACGCTAGTTT 59.775 37.037 6.52 0.00 0.00 2.66
1802 1827 2.386249 GCGAGTGCTAATAGAGGAACG 58.614 52.381 0.00 0.00 38.39 3.95
1824 1849 4.246458 GTCCGACTTATATTCCCATCTGC 58.754 47.826 0.00 0.00 0.00 4.26
1965 2037 5.751028 GTGCAAGTTAGGCATGTGTTTTAAA 59.249 36.000 0.00 0.00 44.11 1.52
2003 2075 6.850752 AATGTTTCCCCTTAAACGATGATT 57.149 33.333 0.00 0.00 41.33 2.57
2007 2079 4.836175 ACCAAATGTTTCCCCTTAAACGAT 59.164 37.500 0.00 0.00 41.33 3.73
2010 2082 5.284861 ACACCAAATGTTTCCCCTTAAAC 57.715 39.130 0.00 0.00 38.98 2.01
2204 2342 5.773176 TGCATCCTAACTATCCAGATAACGA 59.227 40.000 0.00 0.00 0.00 3.85
2214 2352 4.330074 GTGTGTGTGTGCATCCTAACTATC 59.670 45.833 0.00 0.00 0.00 2.08
2222 2360 0.029300 GTGTGTGTGTGTGTGCATCC 59.971 55.000 0.00 0.00 0.00 3.51
2243 2395 2.493088 ATTAGTTGCGTGCGTGCGTG 62.493 55.000 3.11 0.00 37.81 5.34
2244 2396 1.009903 TATTAGTTGCGTGCGTGCGT 61.010 50.000 3.11 0.00 37.81 5.24
2245 2397 0.093875 TTATTAGTTGCGTGCGTGCG 59.906 50.000 0.00 0.00 37.81 5.34
2246 2398 2.235238 TTTATTAGTTGCGTGCGTGC 57.765 45.000 0.00 0.00 0.00 5.34
2248 2400 4.671880 TGATTTTATTAGTTGCGTGCGT 57.328 36.364 0.00 0.00 0.00 5.24
2249 2401 5.340932 TGTTTGATTTTATTAGTTGCGTGCG 59.659 36.000 0.00 0.00 0.00 5.34
2250 2402 6.683090 TGTTTGATTTTATTAGTTGCGTGC 57.317 33.333 0.00 0.00 0.00 5.34
2254 2406 8.803799 CCGGTATTGTTTGATTTTATTAGTTGC 58.196 33.333 0.00 0.00 0.00 4.17
2261 2413 8.846211 CAGGTATCCGGTATTGTTTGATTTTAT 58.154 33.333 0.00 0.00 0.00 1.40
2262 2414 7.283580 CCAGGTATCCGGTATTGTTTGATTTTA 59.716 37.037 0.00 0.00 0.00 1.52
2263 2415 6.096282 CCAGGTATCCGGTATTGTTTGATTTT 59.904 38.462 0.00 0.00 0.00 1.82
2264 2416 5.592688 CCAGGTATCCGGTATTGTTTGATTT 59.407 40.000 0.00 0.00 0.00 2.17
2265 2417 5.130350 CCAGGTATCCGGTATTGTTTGATT 58.870 41.667 0.00 0.00 0.00 2.57
2266 2418 4.165372 ACCAGGTATCCGGTATTGTTTGAT 59.835 41.667 0.00 0.00 31.03 2.57
2277 2429 3.849563 TTTATTCCACCAGGTATCCGG 57.150 47.619 0.00 0.00 35.89 5.14
2285 2437 8.204160 AGTTCTTTTTCCTTTTTATTCCACCAG 58.796 33.333 0.00 0.00 0.00 4.00
2293 2445 8.204160 CACTTGGGAGTTCTTTTTCCTTTTTAT 58.796 33.333 0.00 0.00 32.54 1.40
2345 2499 0.468226 TGGTCCGGATATGGTTGCTC 59.532 55.000 7.81 0.00 0.00 4.26
2369 2523 6.650807 TCTTGTTCTATTGGTGATGTCAAGAC 59.349 38.462 0.00 0.00 35.47 3.01
2419 2573 0.817634 TGTGCGTTGGTTCCTTCCTG 60.818 55.000 0.00 0.00 0.00 3.86
2459 2613 6.832384 ACTCATGATCTGGCATTTGATAGTTT 59.168 34.615 0.00 0.00 0.00 2.66
2500 2654 2.040544 CGGATTTGCTCGGCCTTGT 61.041 57.895 0.00 0.00 0.00 3.16
2501 2655 1.305219 TTCGGATTTGCTCGGCCTTG 61.305 55.000 0.00 0.00 0.00 3.61
2503 2657 1.745489 GTTCGGATTTGCTCGGCCT 60.745 57.895 0.00 0.00 0.00 5.19
2504 2658 1.582610 TTGTTCGGATTTGCTCGGCC 61.583 55.000 0.00 0.00 0.00 6.13
2505 2659 0.454452 GTTGTTCGGATTTGCTCGGC 60.454 55.000 0.00 0.00 0.00 5.54
2516 2670 0.309302 TTGTTGGATGCGTTGTTCGG 59.691 50.000 0.00 0.00 40.26 4.30
2527 2924 5.977635 TCTTGTGTCGATATCTTGTTGGAT 58.022 37.500 0.34 0.00 0.00 3.41
2546 2943 2.159430 TCGGCAATGACGATGTTTCTTG 59.841 45.455 7.28 0.00 38.55 3.02
2557 2954 3.840890 TTGGTTACATTCGGCAATGAC 57.159 42.857 13.95 5.35 41.97 3.06
2582 2979 1.070289 GTGAAAACCCGAGGTCTGACT 59.930 52.381 7.85 0.00 33.12 3.41
2603 3000 5.594725 TCAAAGACCAGTCTCGAGCTATATT 59.405 40.000 7.81 1.70 39.39 1.28
2605 3002 4.524053 TCAAAGACCAGTCTCGAGCTATA 58.476 43.478 7.81 0.00 39.39 1.31
2607 3004 2.750166 CTCAAAGACCAGTCTCGAGCTA 59.250 50.000 7.81 0.00 39.39 3.32
2619 3016 3.064900 AGATGGTGCTTCTCAAAGACC 57.935 47.619 0.00 0.00 35.22 3.85
2622 3019 6.748333 TCAATTAGATGGTGCTTCTCAAAG 57.252 37.500 0.00 0.00 35.47 2.77
2661 3058 2.480419 GGATCACGAAAAGTGGTGTGAG 59.520 50.000 0.00 0.00 45.82 3.51
2685 3082 6.670695 TGGATATGCTATGTGTGTATCTGT 57.329 37.500 0.00 0.00 0.00 3.41
2714 3588 1.374758 GACGGTGTCTTGAGGCAGG 60.375 63.158 0.00 0.00 0.00 4.85
2761 3635 1.812571 GCACATCGGATCCAACAGTTT 59.187 47.619 13.41 0.00 0.00 2.66
2765 3639 2.106074 GCGCACATCGGATCCAACA 61.106 57.895 13.41 0.00 38.94 3.33
2785 3659 1.426621 CATTGCGCTGCGATCAAGT 59.573 52.632 28.07 8.51 28.96 3.16
2802 3677 3.047280 GTGGCGTTGCATCGACCA 61.047 61.111 19.86 20.82 38.16 4.02
2862 3737 4.454504 GGATACAAGACGACAATTGTTGGT 59.545 41.667 26.05 19.94 40.09 3.67
2866 3741 3.259064 CCGGATACAAGACGACAATTGT 58.741 45.455 11.78 11.78 42.15 2.71
2867 3742 2.030457 GCCGGATACAAGACGACAATTG 59.970 50.000 5.05 3.24 0.00 2.32
2869 3744 1.472728 GGCCGGATACAAGACGACAAT 60.473 52.381 5.05 0.00 0.00 2.71
2875 3750 0.252197 ACCTTGGCCGGATACAAGAC 59.748 55.000 25.95 0.00 45.22 3.01
2877 3752 0.748005 CCACCTTGGCCGGATACAAG 60.748 60.000 20.55 20.55 42.77 3.16
2963 3840 4.064491 GAGTGTCGCGTGCAGTGC 62.064 66.667 8.58 8.58 0.00 4.40
2967 3844 3.439513 AACAGGAGTGTCGCGTGCA 62.440 57.895 5.77 3.73 35.08 4.57
2975 3852 2.751166 CTCCGAATCAACAGGAGTGT 57.249 50.000 2.77 0.00 44.79 3.55
2981 3858 1.363744 GAGGTGCTCCGAATCAACAG 58.636 55.000 0.00 0.00 39.05 3.16
3030 3907 4.982701 AGCACAAGGTGGCCTGGC 62.983 66.667 11.05 11.05 32.13 4.85
3031 3908 2.987547 CAGCACAAGGTGGCCTGG 60.988 66.667 3.32 0.00 39.53 4.45
3034 3911 3.677648 CAGCAGCACAAGGTGGCC 61.678 66.667 0.00 0.00 43.34 5.36
3037 3914 3.677648 GGGCAGCAGCACAAGGTG 61.678 66.667 2.65 0.00 45.91 4.00
3071 3948 1.271982 TGTGGCTCTCTCTCTTACGGT 60.272 52.381 0.00 0.00 0.00 4.83
3075 3952 1.464734 CGGTGTGGCTCTCTCTCTTA 58.535 55.000 0.00 0.00 0.00 2.10
3084 3961 2.740055 CTGACTGCGGTGTGGCTC 60.740 66.667 0.80 0.00 0.00 4.70
3100 3977 1.971695 GGGTTAAGCTTGTGCGGCT 60.972 57.895 9.86 0.00 45.42 5.52
3118 3995 4.451241 CATCAGAGGATGTGGCCG 57.549 61.111 0.00 0.00 44.79 6.13
3147 4024 3.339093 CCCCAACCCTCACCCTCC 61.339 72.222 0.00 0.00 0.00 4.30
3171 4048 2.418334 GGGTGGTCTTCTTAACCTAGCG 60.418 54.545 0.00 0.00 37.69 4.26
3172 4049 2.093075 GGGGTGGTCTTCTTAACCTAGC 60.093 54.545 0.00 0.00 37.69 3.42
3179 4056 0.410663 TCTCGGGGGTGGTCTTCTTA 59.589 55.000 0.00 0.00 0.00 2.10
3182 4059 1.522569 CATCTCGGGGGTGGTCTTC 59.477 63.158 0.00 0.00 0.00 2.87
3184 4061 3.083997 GCATCTCGGGGGTGGTCT 61.084 66.667 0.00 0.00 0.00 3.85
3192 4069 1.447643 CTACCCAAGGCATCTCGGG 59.552 63.158 0.00 0.00 44.88 5.14
3199 4076 1.570857 CCACCATCCTACCCAAGGCA 61.571 60.000 0.00 0.00 46.10 4.75
3208 4085 9.973661 CCAATTATAATAACATCCACCATCCTA 57.026 33.333 0.00 0.00 0.00 2.94
3213 4090 7.074366 TCCCTCCAATTATAATAACATCCACCA 59.926 37.037 0.00 0.00 0.00 4.17
3214 4091 7.466804 TCCCTCCAATTATAATAACATCCACC 58.533 38.462 0.00 0.00 0.00 4.61
3215 4092 8.934023 TTCCCTCCAATTATAATAACATCCAC 57.066 34.615 0.00 0.00 0.00 4.02
3284 4163 6.911250 TGTTTCATAGTGGAGTAGTTCTGA 57.089 37.500 0.00 0.00 0.00 3.27
3319 4198 4.150897 TCATCTATTTTGGAACGGAGGG 57.849 45.455 0.00 0.00 0.00 4.30
3320 4199 4.335594 GGTTCATCTATTTTGGAACGGAGG 59.664 45.833 0.00 0.00 40.30 4.30
3321 4200 4.941263 TGGTTCATCTATTTTGGAACGGAG 59.059 41.667 0.00 0.00 40.30 4.63
3322 4201 4.912586 TGGTTCATCTATTTTGGAACGGA 58.087 39.130 0.00 0.00 40.30 4.69
3323 4202 5.183140 AGTTGGTTCATCTATTTTGGAACGG 59.817 40.000 0.00 0.00 40.30 4.44
3324 4203 6.254281 AGTTGGTTCATCTATTTTGGAACG 57.746 37.500 0.00 0.00 40.30 3.95
3325 4204 7.926018 ACAAAGTTGGTTCATCTATTTTGGAAC 59.074 33.333 0.00 0.00 39.04 3.62
3326 4205 8.017418 ACAAAGTTGGTTCATCTATTTTGGAA 57.983 30.769 0.00 0.00 0.00 3.53
3327 4206 7.595819 ACAAAGTTGGTTCATCTATTTTGGA 57.404 32.000 0.00 0.00 0.00 3.53
3328 4207 8.576442 AGTACAAAGTTGGTTCATCTATTTTGG 58.424 33.333 0.00 0.00 0.00 3.28
3354 4233 9.059260 GGGTGACTCAACTTTGTACTAATTTTA 57.941 33.333 0.00 0.00 0.00 1.52
3355 4234 7.558444 TGGGTGACTCAACTTTGTACTAATTTT 59.442 33.333 0.00 0.00 0.00 1.82
3356 4235 7.057894 TGGGTGACTCAACTTTGTACTAATTT 58.942 34.615 0.00 0.00 0.00 1.82
3357 4236 6.597562 TGGGTGACTCAACTTTGTACTAATT 58.402 36.000 0.00 0.00 0.00 1.40
3358 4237 6.182507 TGGGTGACTCAACTTTGTACTAAT 57.817 37.500 0.00 0.00 0.00 1.73
3359 4238 5.617528 TGGGTGACTCAACTTTGTACTAA 57.382 39.130 0.00 0.00 0.00 2.24
3360 4239 5.818678 ATGGGTGACTCAACTTTGTACTA 57.181 39.130 0.00 0.00 0.00 1.82
3361 4240 4.706842 ATGGGTGACTCAACTTTGTACT 57.293 40.909 0.00 0.00 0.00 2.73
3362 4241 5.767816 AAATGGGTGACTCAACTTTGTAC 57.232 39.130 0.00 0.00 0.00 2.90
3363 4242 5.068460 CCAAAATGGGTGACTCAACTTTGTA 59.932 40.000 17.06 0.00 32.67 2.41
3364 4243 4.141959 CCAAAATGGGTGACTCAACTTTGT 60.142 41.667 17.06 0.00 32.67 2.83
3365 4244 4.099266 TCCAAAATGGGTGACTCAACTTTG 59.901 41.667 13.50 13.50 38.32 2.77
3366 4245 4.285863 TCCAAAATGGGTGACTCAACTTT 58.714 39.130 0.00 0.00 38.32 2.66
3367 4246 3.909732 TCCAAAATGGGTGACTCAACTT 58.090 40.909 0.00 0.00 38.32 2.66
3368 4247 3.593442 TCCAAAATGGGTGACTCAACT 57.407 42.857 0.00 0.00 38.32 3.16
3369 4248 3.550030 CGTTCCAAAATGGGTGACTCAAC 60.550 47.826 0.00 0.00 38.32 3.18
3370 4249 2.621055 CGTTCCAAAATGGGTGACTCAA 59.379 45.455 0.00 0.00 38.32 3.02
3371 4250 2.226330 CGTTCCAAAATGGGTGACTCA 58.774 47.619 0.00 0.00 38.32 3.41
3372 4251 1.539827 CCGTTCCAAAATGGGTGACTC 59.460 52.381 0.00 0.00 38.32 3.36
3373 4252 1.144093 TCCGTTCCAAAATGGGTGACT 59.856 47.619 0.00 0.00 41.27 3.41
3374 4253 1.539827 CTCCGTTCCAAAATGGGTGAC 59.460 52.381 0.00 0.00 41.27 3.67
3375 4254 1.546773 CCTCCGTTCCAAAATGGGTGA 60.547 52.381 0.00 0.00 41.27 4.02
3376 4255 0.887933 CCTCCGTTCCAAAATGGGTG 59.112 55.000 0.00 0.00 41.27 4.61
3377 4256 0.481128 ACCTCCGTTCCAAAATGGGT 59.519 50.000 0.00 0.00 41.27 4.51
3378 4257 2.290705 ACTACCTCCGTTCCAAAATGGG 60.291 50.000 0.00 0.00 41.27 4.00
3379 4258 3.067684 ACTACCTCCGTTCCAAAATGG 57.932 47.619 0.00 0.00 42.15 3.16
3380 4259 4.571919 TGTACTACCTCCGTTCCAAAATG 58.428 43.478 0.00 0.00 0.00 2.32
3381 4260 4.895668 TGTACTACCTCCGTTCCAAAAT 57.104 40.909 0.00 0.00 0.00 1.82
3382 4261 4.895668 ATGTACTACCTCCGTTCCAAAA 57.104 40.909 0.00 0.00 0.00 2.44
3383 4262 5.999205 TTATGTACTACCTCCGTTCCAAA 57.001 39.130 0.00 0.00 0.00 3.28
3384 4263 5.657745 TCATTATGTACTACCTCCGTTCCAA 59.342 40.000 0.00 0.00 0.00 3.53
3385 4264 5.202765 TCATTATGTACTACCTCCGTTCCA 58.797 41.667 0.00 0.00 0.00 3.53
3386 4265 5.779529 TCATTATGTACTACCTCCGTTCC 57.220 43.478 0.00 0.00 0.00 3.62
3387 4266 5.690857 GCTTCATTATGTACTACCTCCGTTC 59.309 44.000 0.00 0.00 0.00 3.95
3388 4267 5.363005 AGCTTCATTATGTACTACCTCCGTT 59.637 40.000 0.00 0.00 0.00 4.44
3389 4268 4.894114 AGCTTCATTATGTACTACCTCCGT 59.106 41.667 0.00 0.00 0.00 4.69
3390 4269 5.455056 AGCTTCATTATGTACTACCTCCG 57.545 43.478 0.00 0.00 0.00 4.63
3391 4270 7.953752 AGTAAGCTTCATTATGTACTACCTCC 58.046 38.462 0.00 0.00 0.00 4.30
3407 4286 6.348868 GCCTGGCATTATCATTAGTAAGCTTC 60.349 42.308 15.17 0.00 0.00 3.86
3427 4310 1.766494 TGCACCTTCAATATGCCTGG 58.234 50.000 0.00 0.00 38.63 4.45
3431 4314 2.603892 CGAGCATGCACCTTCAATATGC 60.604 50.000 21.98 0.00 43.23 3.14
3493 4376 0.045162 TTCCCCGTCCCTATTCCCTT 59.955 55.000 0.00 0.00 0.00 3.95
3535 4418 3.849951 CGGTCCCGATCCCTGGTG 61.850 72.222 0.00 0.00 42.83 4.17
3542 4425 2.430921 CTATGCGCGGTCCCGATC 60.431 66.667 8.83 0.29 42.83 3.69
3603 4486 6.864360 AGCATTATTTCTTTGCAAAAGCAA 57.136 29.167 13.84 6.57 38.84 3.91
3627 4510 2.105477 GAGTGGGACTGGATGCATACAT 59.895 50.000 13.22 2.61 39.98 2.29
3715 4956 1.656652 GGCTGCATGTCGTGAGTATT 58.343 50.000 0.50 0.00 0.00 1.89
3732 4973 0.304705 CGTTTGATATGAGCGTGGGC 59.695 55.000 0.00 0.00 40.37 5.36
3773 5014 4.820744 ACGCCATCCCATGCACCC 62.821 66.667 0.00 0.00 0.00 4.61
3789 5030 3.497118 CAGAGACGACACTGAAGATCAC 58.503 50.000 6.48 0.00 36.98 3.06
3800 5041 1.269723 AGACGATTTGCAGAGACGACA 59.730 47.619 12.08 0.00 0.00 4.35
3817 5058 0.664761 ACACACAATGCTGCACAGAC 59.335 50.000 3.57 0.00 0.00 3.51
3828 5069 5.726397 TCCTATACACGCTAAACACACAAT 58.274 37.500 0.00 0.00 0.00 2.71
3830 5071 4.787260 TCCTATACACGCTAAACACACA 57.213 40.909 0.00 0.00 0.00 3.72
3858 5099 7.532884 GCGCCGTCCTTTATTTATTTTATGTAG 59.467 37.037 0.00 0.00 0.00 2.74
3900 5141 8.341903 CCGCAAAAAGAAAATTCCAACTAAAAT 58.658 29.630 0.00 0.00 0.00 1.82
3907 5148 3.471680 CCCCGCAAAAAGAAAATTCCAA 58.528 40.909 0.00 0.00 0.00 3.53
3909 5150 2.224426 ACCCCCGCAAAAAGAAAATTCC 60.224 45.455 0.00 0.00 0.00 3.01
3911 5152 4.691326 TTACCCCCGCAAAAAGAAAATT 57.309 36.364 0.00 0.00 0.00 1.82
3916 5157 2.362717 CACTTTTACCCCCGCAAAAAGA 59.637 45.455 12.32 0.00 40.87 2.52
3917 5158 2.101750 ACACTTTTACCCCCGCAAAAAG 59.898 45.455 5.48 5.48 42.94 2.27
3991 5232 2.580322 TGGCTACAGAATTTCCCCATCA 59.420 45.455 0.00 0.00 0.00 3.07
3998 5239 3.670627 CGGCTTGTTGGCTACAGAATTTC 60.671 47.826 1.44 0.00 38.19 2.17
3999 5240 2.228822 CGGCTTGTTGGCTACAGAATTT 59.771 45.455 1.44 0.00 38.19 1.82
4018 5259 0.739561 GAGAGTAGGGTGTAGCACGG 59.260 60.000 0.00 0.00 34.83 4.94
4029 5270 1.742768 GCGACCATGGGAGAGTAGG 59.257 63.158 18.09 0.00 0.00 3.18
4063 5313 5.209659 AGTCACGGAGATTAAGAATAGGGT 58.790 41.667 0.00 0.00 0.00 4.34
4065 5315 9.197694 CATTTAGTCACGGAGATTAAGAATAGG 57.802 37.037 0.00 0.00 31.19 2.57
4066 5316 9.967346 TCATTTAGTCACGGAGATTAAGAATAG 57.033 33.333 0.00 0.00 31.19 1.73
4068 5318 7.711339 GGTCATTTAGTCACGGAGATTAAGAAT 59.289 37.037 0.00 0.00 31.19 2.40
4100 5399 6.162079 GCCTCAGATATTCTTGATCGATCAA 58.838 40.000 32.71 32.71 43.94 2.57
4101 5400 5.620879 CGCCTCAGATATTCTTGATCGATCA 60.621 44.000 23.99 23.99 34.44 2.92
4124 5423 2.977829 TCGACGACACTTTCTTCATTCG 59.022 45.455 0.00 0.00 0.00 3.34
4238 5537 2.354510 CGACACCTCTTTTTCTGCAACA 59.645 45.455 0.00 0.00 0.00 3.33
4288 5589 0.985490 GGGCTGGTCCTCAGGAATCT 60.985 60.000 0.00 0.00 43.54 2.40
4316 5617 0.898789 GTTCTCCTCAGACGGGACCA 60.899 60.000 0.00 0.00 0.00 4.02
4343 5644 0.406361 ATGGGTTGCCCTTTCGGTTA 59.594 50.000 5.73 0.00 45.70 2.85
4393 5696 2.099098 CCAAGAACAAGGAAACAGCGTT 59.901 45.455 0.00 0.00 0.00 4.84
4398 5701 4.405358 AGCAAATCCAAGAACAAGGAAACA 59.595 37.500 0.00 0.00 37.48 2.83
4458 5761 2.609916 GGCTGCTCGAATAAAAGAGGTC 59.390 50.000 0.00 0.00 35.19 3.85
4525 5828 9.416284 TCTTTTTAGGAGTTCATGGTTAGTTTT 57.584 29.630 0.00 0.00 0.00 2.43
4575 5878 2.603021 TGGCAAATGGTATGGTTGTGT 58.397 42.857 0.00 0.00 0.00 3.72
4591 5894 4.998671 TCAACAAAAACATCTCTTGGCA 57.001 36.364 0.00 0.00 0.00 4.92
4602 5905 5.732185 CGCAAGGTTTCAATTCAACAAAAAC 59.268 36.000 0.59 0.00 0.00 2.43
4633 5936 0.605589 CGACTCTCAAGCCTCAAGGT 59.394 55.000 0.00 0.00 37.57 3.50
4635 5938 0.891373 TCCGACTCTCAAGCCTCAAG 59.109 55.000 0.00 0.00 0.00 3.02
4636 5939 0.603569 GTCCGACTCTCAAGCCTCAA 59.396 55.000 0.00 0.00 0.00 3.02
4637 5940 0.251386 AGTCCGACTCTCAAGCCTCA 60.251 55.000 0.00 0.00 0.00 3.86
4638 5941 0.454196 GAGTCCGACTCTCAAGCCTC 59.546 60.000 19.55 0.00 41.88 4.70
4639 5942 0.968393 GGAGTCCGACTCTCAAGCCT 60.968 60.000 24.45 0.00 44.46 4.58
4640 5943 1.251527 TGGAGTCCGACTCTCAAGCC 61.252 60.000 24.45 10.83 44.46 4.35
4641 5944 0.172352 CTGGAGTCCGACTCTCAAGC 59.828 60.000 24.45 10.73 44.46 4.01
4703 6006 4.661222 TGGAAATACATGTTGGCTCTCAA 58.339 39.130 2.30 0.00 0.00 3.02
4727 6030 4.561735 AATTTAGTTGTGGGTTGTGTCG 57.438 40.909 0.00 0.00 0.00 4.35
4811 6114 7.924541 TGATCTACCTTTGTACACCCTTTATT 58.075 34.615 0.00 0.00 0.00 1.40
4877 6180 8.373992 CGAAATCAAGTCTAGCTGTAACTTAAC 58.626 37.037 0.00 0.00 32.20 2.01
4889 6192 5.109210 TGTACCATGCGAAATCAAGTCTAG 58.891 41.667 0.00 0.00 0.00 2.43
4891 6194 3.935203 CTGTACCATGCGAAATCAAGTCT 59.065 43.478 0.00 0.00 0.00 3.24
4892 6195 3.684788 ACTGTACCATGCGAAATCAAGTC 59.315 43.478 0.00 0.00 0.00 3.01
4893 6196 3.436704 CACTGTACCATGCGAAATCAAGT 59.563 43.478 0.00 0.00 0.00 3.16
4894 6197 3.436704 ACACTGTACCATGCGAAATCAAG 59.563 43.478 0.00 0.00 0.00 3.02
4897 6200 2.742053 ACACACTGTACCATGCGAAATC 59.258 45.455 0.00 0.00 0.00 2.17
4898 6201 2.778299 ACACACTGTACCATGCGAAAT 58.222 42.857 0.00 0.00 0.00 2.17
4899 6202 2.248280 ACACACTGTACCATGCGAAA 57.752 45.000 0.00 0.00 0.00 3.46
4900 6203 2.559231 TCTACACACTGTACCATGCGAA 59.441 45.455 0.00 0.00 0.00 4.70
4902 6205 2.647529 TCTACACACTGTACCATGCG 57.352 50.000 0.00 0.00 0.00 4.73
4904 6207 4.501571 GCCCTATCTACACACTGTACCATG 60.502 50.000 0.00 0.00 0.00 3.66
4906 6209 3.028850 GCCCTATCTACACACTGTACCA 58.971 50.000 0.00 0.00 0.00 3.25
4907 6210 3.028850 TGCCCTATCTACACACTGTACC 58.971 50.000 0.00 0.00 0.00 3.34
4908 6211 4.501571 CCATGCCCTATCTACACACTGTAC 60.502 50.000 0.00 0.00 0.00 2.90
4910 6213 2.435805 CCATGCCCTATCTACACACTGT 59.564 50.000 0.00 0.00 0.00 3.55
4911 6214 2.700371 TCCATGCCCTATCTACACACTG 59.300 50.000 0.00 0.00 0.00 3.66
4912 6215 3.046283 TCCATGCCCTATCTACACACT 57.954 47.619 0.00 0.00 0.00 3.55
4913 6216 3.557898 CCATCCATGCCCTATCTACACAC 60.558 52.174 0.00 0.00 0.00 3.82
4915 6218 2.906389 TCCATCCATGCCCTATCTACAC 59.094 50.000 0.00 0.00 0.00 2.90
4916 6219 3.274281 TCCATCCATGCCCTATCTACA 57.726 47.619 0.00 0.00 0.00 2.74
4917 6220 3.181471 CGATCCATCCATGCCCTATCTAC 60.181 52.174 0.00 0.00 0.00 2.59
4918 6221 3.033909 CGATCCATCCATGCCCTATCTA 58.966 50.000 0.00 0.00 0.00 1.98
4921 6224 1.956869 TCGATCCATCCATGCCCTAT 58.043 50.000 0.00 0.00 0.00 2.57
4922 6225 1.728323 TTCGATCCATCCATGCCCTA 58.272 50.000 0.00 0.00 0.00 3.53
4923 6226 0.846015 TTTCGATCCATCCATGCCCT 59.154 50.000 0.00 0.00 0.00 5.19
4924 6227 1.542915 CATTTCGATCCATCCATGCCC 59.457 52.381 0.00 0.00 0.00 5.36
4925 6228 1.068055 GCATTTCGATCCATCCATGCC 60.068 52.381 0.00 0.00 0.00 4.40
4936 7112 5.690997 TCAGTACGATCTAGCATTTCGAT 57.309 39.130 9.97 0.00 36.73 3.59
5060 7245 2.619646 TCGTGCACACCGAGCTATAATA 59.380 45.455 18.64 0.00 0.00 0.98
5124 7311 7.132213 AGTAAACACATATACATGCATTTCGC 58.868 34.615 0.00 0.00 42.89 4.70
5127 7314 9.929722 CGTAAGTAAACACATATACATGCATTT 57.070 29.630 0.00 0.00 35.39 2.32
5135 7322 8.624877 CGCATACTCGTAAGTAAACACATATAC 58.375 37.037 0.00 0.00 41.25 1.47
5153 7340 9.586150 GCAAAATATATATATGCACGCATACTC 57.414 33.333 20.46 0.00 41.09 2.59
5211 7400 2.930040 GCGAGCTTCATGTAGCAACTTA 59.070 45.455 24.05 0.00 43.68 2.24
5237 7426 4.541973 TCCTTGGATCATATGACCATCG 57.458 45.455 20.64 16.01 33.56 3.84
5325 7514 5.944013 TGTTTCATATCGATTCCGCAAAAA 58.056 33.333 1.71 0.00 35.37 1.94
5326 7515 5.553290 TGTTTCATATCGATTCCGCAAAA 57.447 34.783 1.71 0.00 35.37 2.44
5327 7516 5.295540 TGATGTTTCATATCGATTCCGCAAA 59.704 36.000 1.71 0.00 35.37 3.68
5328 7517 4.813697 TGATGTTTCATATCGATTCCGCAA 59.186 37.500 1.71 0.00 35.37 4.85
5329 7518 4.211164 GTGATGTTTCATATCGATTCCGCA 59.789 41.667 1.71 0.00 33.56 5.69
5330 7519 4.449068 AGTGATGTTTCATATCGATTCCGC 59.551 41.667 1.71 0.00 33.56 5.54
5331 7520 6.530913 AAGTGATGTTTCATATCGATTCCG 57.469 37.500 1.71 0.00 33.56 4.30
5469 7662 7.043590 GCCAATTATAACGACACACTAGTACTG 60.044 40.741 5.39 0.00 0.00 2.74
5478 7671 6.350103 TCCATAAGCCAATTATAACGACACA 58.650 36.000 0.00 0.00 32.61 3.72
5596 7789 0.465705 GGCCGTCATGGAAGATGAGA 59.534 55.000 0.00 0.00 42.00 3.27
5627 7820 0.178891 ATGGCCGATGAGGTAGGGAT 60.179 55.000 0.00 0.00 43.70 3.85
5641 7834 0.179092 GGAAGAATGCAAGCATGGCC 60.179 55.000 8.50 0.00 29.78 5.36
5677 7870 1.357334 GATGACGGAGAGGACGAGC 59.643 63.158 0.00 0.00 34.93 5.03
5845 8038 0.900182 TGAGCATGACTGGGTCGAGT 60.900 55.000 0.00 0.00 34.95 4.18
5846 8039 0.459237 GTGAGCATGACTGGGTCGAG 60.459 60.000 0.00 0.00 34.95 4.04
5896 8089 3.961408 AGAGACGGCTTAGACCATATGTT 59.039 43.478 0.00 0.00 0.00 2.71
5920 8113 2.439507 TCTTATGGGTGCCAAGATCTCC 59.560 50.000 0.00 0.00 36.95 3.71
5932 8125 0.676782 GCCGCACTGTTCTTATGGGT 60.677 55.000 0.00 0.00 0.00 4.51
5966 8159 3.370231 GGTTTGGGCATCGCGGTT 61.370 61.111 6.13 0.00 0.00 4.44
5971 8164 2.849942 TGAGATATGGTTTGGGCATCG 58.150 47.619 0.00 0.00 0.00 3.84
5978 8171 7.492524 TGCTCTAGTAGTTGAGATATGGTTTG 58.507 38.462 12.51 0.00 32.44 2.93
6083 8276 2.358125 CACCATGTCGTCGGCCAA 60.358 61.111 2.24 0.00 0.00 4.52
6110 8303 1.538047 AAAGTCACTTGCGCATCCAT 58.462 45.000 12.75 0.00 0.00 3.41
6115 8308 4.142708 CCATACAATAAAGTCACTTGCGCA 60.143 41.667 5.66 5.66 0.00 6.09
6170 8363 0.326595 TTGGCCAAGAACGCTATGGA 59.673 50.000 16.05 0.00 36.27 3.41
6261 8454 0.736053 GTTTGCCACTTCAACACCGA 59.264 50.000 0.00 0.00 0.00 4.69
6271 8464 1.133513 TGTTGGATCCAGTTTGCCACT 60.134 47.619 15.53 0.00 35.35 4.00
6284 8477 1.153369 CACCGAGCCGATGTTGGAT 60.153 57.895 0.00 0.00 0.00 3.41
6373 8566 1.009829 GCTGCTAATTGGAGACCACG 58.990 55.000 0.00 0.00 36.08 4.94
6409 8602 5.574891 TTAATTACAGGACGCATGCATTT 57.425 34.783 19.57 0.00 0.00 2.32
6430 8623 3.487942 GTGCGTTAACTTTGGCGAAATTT 59.512 39.130 3.71 2.57 0.00 1.82
6471 8664 9.265938 GCAAACTGAAAAGAAAAATCAAAAGAC 57.734 29.630 0.00 0.00 0.00 3.01
6474 8667 8.450180 GGAGCAAACTGAAAAGAAAAATCAAAA 58.550 29.630 0.00 0.00 0.00 2.44
6500 8696 3.062504 GCAAACAAGTTTCCTTTGCACAG 59.937 43.478 13.77 0.00 45.96 3.66
6550 8746 5.482163 TCCATTTGAAAAAGGGATCCAAC 57.518 39.130 15.23 0.00 0.00 3.77
6581 8777 6.599638 GTGCTGGTCAAAGTCCTATAATTCTT 59.400 38.462 0.00 0.00 0.00 2.52
6582 8778 6.116126 GTGCTGGTCAAAGTCCTATAATTCT 58.884 40.000 0.00 0.00 0.00 2.40
6647 8844 5.506649 GGCAAAATACAAAGACGTTCCTTCA 60.507 40.000 0.00 0.00 0.00 3.02
6662 8859 5.437060 TCTCCTTATGTGAGGGCAAAATAC 58.563 41.667 0.00 0.00 37.41 1.89
6736 8934 5.015817 ACACATTAATCCCTTCCCCTTGTTA 59.984 40.000 0.00 0.00 0.00 2.41
6785 8983 8.516234 TCTTTTGTGCAAGAGTTGTAAAACTTA 58.484 29.630 0.00 0.00 32.22 2.24
6798 8998 4.269183 TCTTTCAGGTCTTTTGTGCAAGA 58.731 39.130 0.00 0.00 0.00 3.02
6858 9058 7.436118 TGCTTGATTTTTCTTTTGCAGACTAT 58.564 30.769 0.00 0.00 0.00 2.12
6864 9064 5.873712 TGTCTTGCTTGATTTTTCTTTTGCA 59.126 32.000 0.00 0.00 0.00 4.08
6905 9105 1.923006 ATCTCTGGGGAGGTCGTCGA 61.923 60.000 0.00 0.00 39.86 4.20
6916 9116 1.341285 TGGTGGAAATGCATCTCTGGG 60.341 52.381 0.00 0.00 0.00 4.45
7016 9216 2.237392 GTCCTCTGGTGGATTTGCTAGT 59.763 50.000 0.00 0.00 38.52 2.57
7039 9239 1.977009 GGTGGCTAGGGTGGTTTGC 60.977 63.158 0.00 0.00 0.00 3.68
7077 9277 5.140747 AGCTATGGATCGAACAAGGATAC 57.859 43.478 0.00 0.00 0.00 2.24
7115 9315 9.745018 TCCTTTGTCATCTTCTTTTGATATCTT 57.255 29.630 3.98 0.00 0.00 2.40
7152 9352 1.228510 GCCCTAGGGATTGCTGCTT 59.771 57.895 33.21 0.00 37.50 3.91
7215 9415 2.014554 CGTCGTTCGTGGTGGACTG 61.015 63.158 0.00 0.00 34.52 3.51
7216 9416 2.333938 CGTCGTTCGTGGTGGACT 59.666 61.111 0.00 0.00 34.52 3.85
7234 9434 2.035193 GTCGCCATCTGCATCTTCTAGA 59.965 50.000 0.00 0.00 41.33 2.43
7278 9478 0.605319 CTTCGGTAGCTTGGCACCAA 60.605 55.000 1.46 1.46 32.26 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.