Multiple sequence alignment - TraesCS7B01G419200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G419200 chr7B 100.000 2837 0 0 1 2837 687965498 687962662 0.000000e+00 5240.0
1 TraesCS7B01G419200 chr7B 92.063 1764 89 22 429 2150 451358693 451356939 0.000000e+00 2435.0
2 TraesCS7B01G419200 chr7B 86.687 323 39 2 2260 2579 687034445 687034766 3.480000e-94 355.0
3 TraesCS7B01G419200 chr7B 91.542 201 11 2 235 429 687034134 687034334 3.600000e-69 272.0
4 TraesCS7B01G419200 chr7B 88.571 105 7 2 1 105 688124033 688123934 3.840000e-24 122.0
5 TraesCS7B01G419200 chr7B 92.000 75 3 3 1 74 686828145 686828073 5.000000e-18 102.0
6 TraesCS7B01G419200 chr7D 95.592 1724 74 2 429 2151 193416323 193414601 0.000000e+00 2761.0
7 TraesCS7B01G419200 chr7D 94.384 1745 75 3 429 2150 178288049 178289793 0.000000e+00 2658.0
8 TraesCS7B01G419200 chr7D 93.445 1724 97 7 429 2151 576641930 576640222 0.000000e+00 2543.0
9 TraesCS7B01G419200 chr7D 94.402 911 45 1 429 1339 32873959 32874863 0.000000e+00 1395.0
10 TraesCS7B01G419200 chr7D 88.864 440 37 4 1 429 604390040 604389602 5.380000e-147 531.0
11 TraesCS7B01G419200 chr7D 85.809 303 36 5 2293 2594 604388785 604388489 5.900000e-82 315.0
12 TraesCS7B01G419200 chr7A 91.977 1745 113 12 429 2155 119293815 119295550 0.000000e+00 2422.0
13 TraesCS7B01G419200 chr3B 91.771 1762 104 9 420 2150 31762932 31764683 0.000000e+00 2412.0
14 TraesCS7B01G419200 chr3D 95.435 1424 64 1 728 2150 608744623 608746046 0.000000e+00 2268.0
15 TraesCS7B01G419200 chr4A 91.284 1675 127 7 429 2090 466169973 466168305 0.000000e+00 2266.0
16 TraesCS7B01G419200 chr2D 90.932 1180 100 5 876 2052 92864345 92865520 0.000000e+00 1580.0
17 TraesCS7B01G419200 chr1B 89.097 1229 106 10 943 2147 585169237 585168013 0.000000e+00 1502.0
18 TraesCS7B01G419200 chr5A 95.833 96 3 1 2056 2150 246802805 246802710 1.360000e-33 154.0
19 TraesCS7B01G419200 chr2B 92.157 102 7 1 2050 2150 13039717 13039818 2.950000e-30 143.0
20 TraesCS7B01G419200 chr1D 95.652 46 1 1 2750 2795 238080316 238080360 3.920000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G419200 chr7B 687962662 687965498 2836 True 5240.0 5240 100.0000 1 2837 1 chr7B.!!$R3 2836
1 TraesCS7B01G419200 chr7B 451356939 451358693 1754 True 2435.0 2435 92.0630 429 2150 1 chr7B.!!$R1 1721
2 TraesCS7B01G419200 chr7B 687034134 687034766 632 False 313.5 355 89.1145 235 2579 2 chr7B.!!$F1 2344
3 TraesCS7B01G419200 chr7D 193414601 193416323 1722 True 2761.0 2761 95.5920 429 2151 1 chr7D.!!$R1 1722
4 TraesCS7B01G419200 chr7D 178288049 178289793 1744 False 2658.0 2658 94.3840 429 2150 1 chr7D.!!$F2 1721
5 TraesCS7B01G419200 chr7D 576640222 576641930 1708 True 2543.0 2543 93.4450 429 2151 1 chr7D.!!$R2 1722
6 TraesCS7B01G419200 chr7D 32873959 32874863 904 False 1395.0 1395 94.4020 429 1339 1 chr7D.!!$F1 910
7 TraesCS7B01G419200 chr7D 604388489 604390040 1551 True 423.0 531 87.3365 1 2594 2 chr7D.!!$R3 2593
8 TraesCS7B01G419200 chr7A 119293815 119295550 1735 False 2422.0 2422 91.9770 429 2155 1 chr7A.!!$F1 1726
9 TraesCS7B01G419200 chr3B 31762932 31764683 1751 False 2412.0 2412 91.7710 420 2150 1 chr3B.!!$F1 1730
10 TraesCS7B01G419200 chr3D 608744623 608746046 1423 False 2268.0 2268 95.4350 728 2150 1 chr3D.!!$F1 1422
11 TraesCS7B01G419200 chr4A 466168305 466169973 1668 True 2266.0 2266 91.2840 429 2090 1 chr4A.!!$R1 1661
12 TraesCS7B01G419200 chr2D 92864345 92865520 1175 False 1580.0 1580 90.9320 876 2052 1 chr2D.!!$F1 1176
13 TraesCS7B01G419200 chr1B 585168013 585169237 1224 True 1502.0 1502 89.0970 943 2147 1 chr1B.!!$R1 1204

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 660 0.036875 CTTCCAAAAGCCCGGTCTCT 59.963 55.0 0.0 0.0 0.0 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2619 3200 0.036875 GAGGGTGCTAGCTTTGTGGT 59.963 55.0 17.23 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.223377 CCTAGCGTGAGTCCAAAACAAC 59.777 50.000 0.00 0.00 0.00 3.32
27 28 2.085532 CGTGAGTCCAAAACAACACG 57.914 50.000 0.00 0.00 46.01 4.49
28 29 1.822581 GTGAGTCCAAAACAACACGC 58.177 50.000 0.00 0.00 31.51 5.34
82 83 5.010617 GGTTAATGTCAGTTTGGTGGTTCAT 59.989 40.000 0.00 0.00 0.00 2.57
101 102 2.991434 TTCACTGTCTACTCACTCGC 57.009 50.000 0.00 0.00 0.00 5.03
107 108 3.120269 ACTGTCTACTCACTCGCTTAACG 60.120 47.826 0.00 0.00 45.62 3.18
110 119 1.912110 CTACTCACTCGCTTAACGTGC 59.088 52.381 0.00 0.00 44.19 5.34
118 127 2.857748 CTCGCTTAACGTGCATACATGA 59.142 45.455 0.00 0.00 44.19 3.07
135 144 1.077787 GATCAATGTGTCCCCGGCA 60.078 57.895 0.00 0.00 0.00 5.69
137 146 0.752743 ATCAATGTGTCCCCGGCATG 60.753 55.000 0.00 0.00 0.00 4.06
144 153 3.014538 TCCCCGGCATGGTCATGT 61.015 61.111 11.92 0.00 40.80 3.21
147 156 2.409055 CCCGGCATGGTCATGTGTG 61.409 63.158 11.92 3.40 40.80 3.82
197 208 3.497879 GCTGGTACGGGTGCATTC 58.502 61.111 0.00 0.00 33.56 2.67
198 209 2.112815 GCTGGTACGGGTGCATTCC 61.113 63.158 0.00 0.00 33.56 3.01
209 220 4.166011 GCATTCCCGAGCACGTGC 62.166 66.667 32.79 32.79 42.49 5.34
210 221 2.741985 CATTCCCGAGCACGTGCA 60.742 61.111 39.21 20.36 45.16 4.57
279 290 2.416431 GCTGCTTCTGGGTGCTTTAATG 60.416 50.000 0.00 0.00 0.00 1.90
317 328 6.331369 ACTTTATGTTGCATGTTTAGCTGT 57.669 33.333 0.00 0.00 0.00 4.40
333 344 3.447918 GCTGTTGCTGGCATAATCATT 57.552 42.857 0.00 0.00 36.03 2.57
367 378 3.542712 TTGAAGCTTTTCTGCATCGTC 57.457 42.857 0.00 0.00 33.90 4.20
368 379 1.460743 TGAAGCTTTTCTGCATCGTCG 59.539 47.619 0.00 0.00 33.90 5.12
370 381 0.950555 AGCTTTTCTGCATCGTCGCA 60.951 50.000 0.00 1.78 40.32 5.10
398 409 7.339466 AGTTATTTAAGTTTGGCCGATTCAGAT 59.661 33.333 0.00 0.00 0.00 2.90
399 410 5.975693 TTTAAGTTTGGCCGATTCAGATT 57.024 34.783 0.00 0.00 0.00 2.40
400 411 3.855689 AAGTTTGGCCGATTCAGATTG 57.144 42.857 0.00 0.00 0.00 2.67
401 412 2.795329 AGTTTGGCCGATTCAGATTGT 58.205 42.857 0.00 0.00 0.00 2.71
402 413 3.157087 AGTTTGGCCGATTCAGATTGTT 58.843 40.909 0.00 0.00 0.00 2.83
403 414 3.573967 AGTTTGGCCGATTCAGATTGTTT 59.426 39.130 0.00 0.00 0.00 2.83
404 415 3.574284 TTGGCCGATTCAGATTGTTTG 57.426 42.857 0.00 0.00 0.00 2.93
405 416 1.818060 TGGCCGATTCAGATTGTTTGG 59.182 47.619 0.00 0.00 0.00 3.28
406 417 1.818674 GGCCGATTCAGATTGTTTGGT 59.181 47.619 0.00 0.00 0.00 3.67
407 418 2.415893 GGCCGATTCAGATTGTTTGGTG 60.416 50.000 0.00 0.00 0.00 4.17
408 419 2.228822 GCCGATTCAGATTGTTTGGTGT 59.771 45.455 0.00 0.00 0.00 4.16
409 420 3.825308 CCGATTCAGATTGTTTGGTGTG 58.175 45.455 0.00 0.00 0.00 3.82
410 421 3.236816 CGATTCAGATTGTTTGGTGTGC 58.763 45.455 0.00 0.00 0.00 4.57
411 422 3.058016 CGATTCAGATTGTTTGGTGTGCT 60.058 43.478 0.00 0.00 0.00 4.40
412 423 3.713858 TTCAGATTGTTTGGTGTGCTG 57.286 42.857 0.00 0.00 0.00 4.41
413 424 2.929641 TCAGATTGTTTGGTGTGCTGA 58.070 42.857 0.00 0.00 0.00 4.26
414 425 3.489355 TCAGATTGTTTGGTGTGCTGAT 58.511 40.909 0.00 0.00 0.00 2.90
415 426 3.253921 TCAGATTGTTTGGTGTGCTGATG 59.746 43.478 0.00 0.00 0.00 3.07
416 427 2.029649 AGATTGTTTGGTGTGCTGATGC 60.030 45.455 0.00 0.00 40.20 3.91
458 469 2.688666 TGCCGCCTCCATCCTTCT 60.689 61.111 0.00 0.00 0.00 2.85
645 660 0.036875 CTTCCAAAAGCCCGGTCTCT 59.963 55.000 0.00 0.00 0.00 3.10
775 790 1.134280 CATTTGCTCCTCGTCCCATCT 60.134 52.381 0.00 0.00 0.00 2.90
815 831 4.467084 TTGTCGATGCCTCGCCCC 62.467 66.667 6.51 0.00 44.65 5.80
849 865 2.991250 GCAGTTTGCAGAGATCCCTTA 58.009 47.619 0.00 0.00 44.26 2.69
850 866 3.549794 GCAGTTTGCAGAGATCCCTTAT 58.450 45.455 0.00 0.00 44.26 1.73
934 957 1.004628 TCAGCTCTTTGGCATGCCTTA 59.995 47.619 35.53 21.59 36.94 2.69
948 971 1.440060 CCTTATCGCGCCACCACTA 59.560 57.895 0.00 0.00 0.00 2.74
1003 1026 0.610785 TTCTTTTGGGGGTCCGATGC 60.611 55.000 0.00 0.00 35.24 3.91
1131 1168 1.896220 CAACTCAGCCCAAGTTGCTA 58.104 50.000 9.65 0.00 44.94 3.49
1206 1477 1.308783 TTGTGTCGGCTGTGTTGCAA 61.309 50.000 0.00 0.00 34.04 4.08
1488 1814 1.692762 GAGGGGCAGGATTCACCTAGA 60.693 57.143 0.00 0.00 32.66 2.43
1550 2032 8.797438 GTCAGTGGTATCTATGACTGATAATGA 58.203 37.037 0.00 0.00 44.89 2.57
1708 2231 9.163894 AGGTCAATGATATTCTCTTCCAGATAA 57.836 33.333 0.00 0.00 0.00 1.75
1725 2248 5.125097 CCAGATAAAGATTCACAGCTTGCTT 59.875 40.000 0.00 0.00 0.00 3.91
1763 2320 3.419858 CCCTGGATCTGGCAAGGT 58.580 61.111 0.00 0.00 0.00 3.50
1825 2382 1.896660 GCCACAAGAAAGGCGTCCA 60.897 57.895 0.00 0.00 41.70 4.02
1875 2432 4.431378 TCTTGGGTTGTCCTTATGGTCTA 58.569 43.478 0.00 0.00 36.20 2.59
1987 2547 0.944386 CGCTATGTGTTGGGTATGGC 59.056 55.000 0.00 0.00 0.00 4.40
2090 2668 3.822167 GGTTTTCCGTTGATTAACTGGGA 59.178 43.478 9.97 3.10 34.60 4.37
2103 2681 6.886459 TGATTAACTGGGAAATTCTCTTCTGG 59.114 38.462 0.00 0.00 0.00 3.86
2169 2747 7.913674 AAAAATTAACAAAACACTGGCAGAA 57.086 28.000 23.66 1.26 0.00 3.02
2170 2748 8.504812 AAAAATTAACAAAACACTGGCAGAAT 57.495 26.923 23.66 5.38 0.00 2.40
2171 2749 7.713764 AAATTAACAAAACACTGGCAGAATC 57.286 32.000 23.66 0.00 0.00 2.52
2172 2750 5.843673 TTAACAAAACACTGGCAGAATCA 57.156 34.783 23.66 0.00 0.00 2.57
2173 2751 4.734398 AACAAAACACTGGCAGAATCAA 57.266 36.364 23.66 0.00 0.00 2.57
2174 2752 4.045636 ACAAAACACTGGCAGAATCAAC 57.954 40.909 23.66 0.00 0.00 3.18
2175 2753 3.701040 ACAAAACACTGGCAGAATCAACT 59.299 39.130 23.66 0.00 0.00 3.16
2176 2754 3.996150 AAACACTGGCAGAATCAACTG 57.004 42.857 23.66 9.55 40.43 3.16
2185 2763 1.462283 CAGAATCAACTGCACCTCACG 59.538 52.381 0.00 0.00 0.00 4.35
2186 2764 1.344438 AGAATCAACTGCACCTCACGA 59.656 47.619 0.00 0.00 0.00 4.35
2187 2765 2.027745 AGAATCAACTGCACCTCACGAT 60.028 45.455 0.00 0.00 0.00 3.73
2188 2766 2.015736 ATCAACTGCACCTCACGATC 57.984 50.000 0.00 0.00 0.00 3.69
2189 2767 0.388520 TCAACTGCACCTCACGATCG 60.389 55.000 14.88 14.88 0.00 3.69
2190 2768 0.388520 CAACTGCACCTCACGATCGA 60.389 55.000 24.34 0.00 0.00 3.59
2191 2769 0.317160 AACTGCACCTCACGATCGAA 59.683 50.000 24.34 8.48 0.00 3.71
2192 2770 0.109086 ACTGCACCTCACGATCGAAG 60.109 55.000 24.34 17.54 0.00 3.79
2193 2771 0.803768 CTGCACCTCACGATCGAAGG 60.804 60.000 27.99 27.99 0.00 3.46
2194 2772 1.519455 GCACCTCACGATCGAAGGG 60.519 63.158 30.71 24.63 0.00 3.95
2195 2773 1.945354 GCACCTCACGATCGAAGGGA 61.945 60.000 30.71 18.75 0.00 4.20
2196 2774 0.747255 CACCTCACGATCGAAGGGAT 59.253 55.000 30.71 17.09 38.35 3.85
2197 2775 1.033574 ACCTCACGATCGAAGGGATC 58.966 55.000 30.71 0.00 46.70 3.36
2205 2783 3.051081 GATCGAAGGGATCCAATGGAG 57.949 52.381 15.23 0.00 44.86 3.86
2206 2784 2.174685 TCGAAGGGATCCAATGGAGA 57.825 50.000 15.23 1.94 34.05 3.71
2207 2785 2.477245 TCGAAGGGATCCAATGGAGAA 58.523 47.619 15.23 0.00 34.05 2.87
2208 2786 3.048600 TCGAAGGGATCCAATGGAGAAT 58.951 45.455 15.23 0.00 34.05 2.40
2209 2787 4.231273 TCGAAGGGATCCAATGGAGAATA 58.769 43.478 15.23 0.00 34.05 1.75
2210 2788 4.040461 TCGAAGGGATCCAATGGAGAATAC 59.960 45.833 15.23 0.00 34.05 1.89
2211 2789 4.202357 CGAAGGGATCCAATGGAGAATACA 60.202 45.833 15.23 0.00 34.05 2.29
2212 2790 5.513788 CGAAGGGATCCAATGGAGAATACAT 60.514 44.000 15.23 0.00 34.05 2.29
2213 2791 5.937492 AGGGATCCAATGGAGAATACATT 57.063 39.130 15.23 0.00 39.00 2.71
2222 2800 6.690194 AATGGAGAATACATTGACAAGAGC 57.310 37.500 0.00 0.00 37.18 4.09
2223 2801 5.164620 TGGAGAATACATTGACAAGAGCA 57.835 39.130 0.00 0.00 0.00 4.26
2224 2802 5.748402 TGGAGAATACATTGACAAGAGCAT 58.252 37.500 0.00 0.00 0.00 3.79
2225 2803 6.182627 TGGAGAATACATTGACAAGAGCATT 58.817 36.000 0.00 0.00 0.00 3.56
2226 2804 6.660521 TGGAGAATACATTGACAAGAGCATTT 59.339 34.615 0.00 0.00 0.00 2.32
2227 2805 6.971184 GGAGAATACATTGACAAGAGCATTTG 59.029 38.462 0.00 0.00 0.00 2.32
2228 2806 7.148188 GGAGAATACATTGACAAGAGCATTTGA 60.148 37.037 7.14 0.00 0.00 2.69
2229 2807 8.114331 AGAATACATTGACAAGAGCATTTGAA 57.886 30.769 7.14 0.00 0.00 2.69
2230 2808 8.242053 AGAATACATTGACAAGAGCATTTGAAG 58.758 33.333 7.14 0.00 0.00 3.02
2231 2809 5.779529 ACATTGACAAGAGCATTTGAAGT 57.220 34.783 7.14 0.00 0.00 3.01
2232 2810 6.152932 ACATTGACAAGAGCATTTGAAGTT 57.847 33.333 7.14 0.00 0.00 2.66
2233 2811 6.576185 ACATTGACAAGAGCATTTGAAGTTT 58.424 32.000 7.14 0.00 0.00 2.66
2234 2812 7.043565 ACATTGACAAGAGCATTTGAAGTTTT 58.956 30.769 7.14 0.00 0.00 2.43
2235 2813 7.223387 ACATTGACAAGAGCATTTGAAGTTTTC 59.777 33.333 7.14 0.00 0.00 2.29
2236 2814 5.273170 TGACAAGAGCATTTGAAGTTTTCG 58.727 37.500 7.14 0.00 0.00 3.46
2237 2815 5.163663 TGACAAGAGCATTTGAAGTTTTCGT 60.164 36.000 7.14 0.00 0.00 3.85
2238 2816 5.036737 ACAAGAGCATTTGAAGTTTTCGTG 58.963 37.500 7.14 0.00 0.00 4.35
2239 2817 4.900635 AGAGCATTTGAAGTTTTCGTGT 57.099 36.364 0.00 0.00 0.00 4.49
2240 2818 6.183360 ACAAGAGCATTTGAAGTTTTCGTGTA 60.183 34.615 7.14 0.00 0.00 2.90
2241 2819 5.748592 AGAGCATTTGAAGTTTTCGTGTAC 58.251 37.500 0.00 0.00 0.00 2.90
2242 2820 4.855531 AGCATTTGAAGTTTTCGTGTACC 58.144 39.130 0.00 0.00 0.00 3.34
2243 2821 3.978855 GCATTTGAAGTTTTCGTGTACCC 59.021 43.478 0.00 0.00 0.00 3.69
2244 2822 4.498345 GCATTTGAAGTTTTCGTGTACCCA 60.498 41.667 0.00 0.00 0.00 4.51
2245 2823 5.768317 CATTTGAAGTTTTCGTGTACCCAT 58.232 37.500 0.00 0.00 0.00 4.00
2246 2824 5.427036 TTTGAAGTTTTCGTGTACCCATC 57.573 39.130 0.00 0.00 0.00 3.51
2247 2825 3.404899 TGAAGTTTTCGTGTACCCATCC 58.595 45.455 0.00 0.00 0.00 3.51
2248 2826 2.484742 AGTTTTCGTGTACCCATCCC 57.515 50.000 0.00 0.00 0.00 3.85
2249 2827 1.081094 GTTTTCGTGTACCCATCCCG 58.919 55.000 0.00 0.00 0.00 5.14
2250 2828 0.674269 TTTTCGTGTACCCATCCCGC 60.674 55.000 0.00 0.00 0.00 6.13
2251 2829 1.828461 TTTCGTGTACCCATCCCGCA 61.828 55.000 0.00 0.00 0.00 5.69
2252 2830 1.828461 TTCGTGTACCCATCCCGCAA 61.828 55.000 0.00 0.00 0.00 4.85
2253 2831 1.376166 CGTGTACCCATCCCGCAAA 60.376 57.895 0.00 0.00 0.00 3.68
2254 2832 0.956410 CGTGTACCCATCCCGCAAAA 60.956 55.000 0.00 0.00 0.00 2.44
2255 2833 1.249407 GTGTACCCATCCCGCAAAAA 58.751 50.000 0.00 0.00 0.00 1.94
2280 2858 6.904463 AAAAAGTTTTCGTGTACCCCATAT 57.096 33.333 0.32 0.00 0.00 1.78
2282 2860 7.619964 AAAAGTTTTCGTGTACCCCATATAG 57.380 36.000 0.00 0.00 0.00 1.31
2286 2864 1.881973 TCGTGTACCCCATATAGCGTC 59.118 52.381 0.00 0.00 0.00 5.19
2299 2877 2.071844 TAGCGTCATGAGCTACGGCC 62.072 60.000 17.57 0.00 44.05 6.13
2306 2887 1.320344 ATGAGCTACGGCCGTTCAGA 61.320 55.000 38.94 18.19 39.73 3.27
2336 2917 3.504520 GCGGTTGACTTAATTTTCCTGGA 59.495 43.478 0.00 0.00 0.00 3.86
2339 2920 5.393027 CGGTTGACTTAATTTTCCTGGATGG 60.393 44.000 0.00 0.00 37.10 3.51
2341 2922 4.023291 TGACTTAATTTTCCTGGATGGCC 58.977 43.478 0.00 0.00 35.26 5.36
2342 2923 4.023291 GACTTAATTTTCCTGGATGGCCA 58.977 43.478 8.56 8.56 43.47 5.36
2346 2927 4.492494 AATTTTCCTGGATGGCCATTTC 57.508 40.909 21.84 15.79 44.91 2.17
2394 2975 0.884704 TCACGCTGGTTCAAGCTTCC 60.885 55.000 0.00 0.00 41.24 3.46
2399 2980 1.856265 CTGGTTCAAGCTTCCACGGC 61.856 60.000 0.00 0.00 0.00 5.68
2401 2982 2.110213 TTCAAGCTTCCACGGCGT 59.890 55.556 6.77 6.77 34.52 5.68
2403 2984 0.669318 TTCAAGCTTCCACGGCGTAG 60.669 55.000 14.22 5.38 34.52 3.51
2407 2988 2.975536 CTTCCACGGCGTAGGGAA 59.024 61.111 24.70 24.70 38.33 3.97
2408 2989 1.447314 CTTCCACGGCGTAGGGAAC 60.447 63.158 23.18 0.00 35.84 3.62
2445 3026 2.363306 AGTGGGACTTTGCATGAACA 57.637 45.000 0.00 0.00 0.00 3.18
2446 3027 2.665165 AGTGGGACTTTGCATGAACAA 58.335 42.857 0.00 0.00 0.00 2.83
2454 3035 2.702898 TTGCATGAACAATGACCACG 57.297 45.000 0.00 0.00 38.72 4.94
2457 3038 2.819019 TGCATGAACAATGACCACGAAT 59.181 40.909 0.00 0.00 38.72 3.34
2465 3046 3.826157 ACAATGACCACGAATGACCAAAT 59.174 39.130 0.00 0.00 0.00 2.32
2471 3052 3.073678 CCACGAATGACCAAATGTCTCA 58.926 45.455 0.00 0.00 44.75 3.27
2501 3082 2.212812 TGCATGCATGGGTGACTTTA 57.787 45.000 27.34 0.00 0.00 1.85
2502 3083 1.818060 TGCATGCATGGGTGACTTTAC 59.182 47.619 27.34 7.66 0.00 2.01
2507 3088 0.802494 CATGGGTGACTTTACCACGC 59.198 55.000 0.00 0.00 42.69 5.34
2557 3138 1.032114 GCCGGCCTGTATCTGCTTTT 61.032 55.000 18.11 0.00 0.00 2.27
2579 3160 2.594592 AGGCCGCCGGAATAATGC 60.595 61.111 7.68 0.00 0.00 3.56
2581 3162 1.302192 GGCCGCCGGAATAATGCTA 60.302 57.895 7.68 0.00 0.00 3.49
2588 3169 3.064820 CGCCGGAATAATGCTACAACTTT 59.935 43.478 5.05 0.00 0.00 2.66
2594 3175 6.019075 CGGAATAATGCTACAACTTTCGATCA 60.019 38.462 0.00 0.00 0.00 2.92
2595 3176 7.126398 GGAATAATGCTACAACTTTCGATCAC 58.874 38.462 0.00 0.00 0.00 3.06
2596 3177 4.584029 AATGCTACAACTTTCGATCACG 57.416 40.909 0.00 0.00 41.26 4.35
2597 3178 2.333926 TGCTACAACTTTCGATCACGG 58.666 47.619 0.00 0.00 40.21 4.94
2598 3179 1.060698 GCTACAACTTTCGATCACGGC 59.939 52.381 0.00 0.00 40.21 5.68
2599 3180 1.659098 CTACAACTTTCGATCACGGCC 59.341 52.381 0.00 0.00 40.21 6.13
2600 3181 0.250124 ACAACTTTCGATCACGGCCA 60.250 50.000 2.24 0.00 40.21 5.36
2601 3182 0.165944 CAACTTTCGATCACGGCCAC 59.834 55.000 2.24 0.00 40.21 5.01
2603 3184 1.445410 CTTTCGATCACGGCCACGA 60.445 57.895 2.24 0.00 44.60 4.35
2604 3185 1.683790 CTTTCGATCACGGCCACGAC 61.684 60.000 2.24 0.00 44.60 4.34
2605 3186 2.423290 TTTCGATCACGGCCACGACA 62.423 55.000 2.24 0.00 44.60 4.35
2606 3187 3.179265 CGATCACGGCCACGACAC 61.179 66.667 2.24 0.00 44.60 3.67
2607 3188 2.048597 GATCACGGCCACGACACA 60.049 61.111 2.24 0.00 44.60 3.72
2608 3189 2.357034 ATCACGGCCACGACACAC 60.357 61.111 2.24 0.00 44.60 3.82
2609 3190 3.158537 ATCACGGCCACGACACACA 62.159 57.895 2.24 0.00 44.60 3.72
2610 3191 2.652382 ATCACGGCCACGACACACAA 62.652 55.000 2.24 0.00 44.60 3.33
2611 3192 2.125065 ACGGCCACGACACACAAA 60.125 55.556 2.24 0.00 44.60 2.83
2612 3193 1.525077 ACGGCCACGACACACAAAT 60.525 52.632 2.24 0.00 44.60 2.32
2613 3194 1.082169 CGGCCACGACACACAAATG 60.082 57.895 2.24 0.00 44.60 2.32
2614 3195 1.781025 CGGCCACGACACACAAATGT 61.781 55.000 2.24 0.00 44.60 2.71
2615 3196 0.040425 GGCCACGACACACAAATGTC 60.040 55.000 0.00 0.00 44.68 3.06
2623 3204 3.888934 GACACACAAATGTCATCACCAC 58.111 45.455 1.08 0.00 46.89 4.16
2624 3205 3.286353 ACACACAAATGTCATCACCACA 58.714 40.909 0.00 0.00 36.72 4.17
2625 3206 3.698539 ACACACAAATGTCATCACCACAA 59.301 39.130 0.00 0.00 36.72 3.33
2626 3207 4.159321 ACACACAAATGTCATCACCACAAA 59.841 37.500 0.00 0.00 36.72 2.83
2627 3208 4.741185 CACACAAATGTCATCACCACAAAG 59.259 41.667 0.00 0.00 36.72 2.77
2628 3209 3.737266 CACAAATGTCATCACCACAAAGC 59.263 43.478 0.00 0.00 0.00 3.51
2629 3210 3.638160 ACAAATGTCATCACCACAAAGCT 59.362 39.130 0.00 0.00 0.00 3.74
2630 3211 4.826733 ACAAATGTCATCACCACAAAGCTA 59.173 37.500 0.00 0.00 0.00 3.32
2631 3212 5.048504 ACAAATGTCATCACCACAAAGCTAG 60.049 40.000 0.00 0.00 0.00 3.42
2632 3213 2.426522 TGTCATCACCACAAAGCTAGC 58.573 47.619 6.62 6.62 0.00 3.42
2633 3214 2.224499 TGTCATCACCACAAAGCTAGCA 60.224 45.455 18.83 0.00 0.00 3.49
2634 3215 2.160417 GTCATCACCACAAAGCTAGCAC 59.840 50.000 18.83 0.00 0.00 4.40
2635 3216 1.470098 CATCACCACAAAGCTAGCACC 59.530 52.381 18.83 0.00 0.00 5.01
2636 3217 0.250727 TCACCACAAAGCTAGCACCC 60.251 55.000 18.83 0.00 0.00 4.61
2637 3218 0.250901 CACCACAAAGCTAGCACCCT 60.251 55.000 18.83 0.00 0.00 4.34
2638 3219 0.036875 ACCACAAAGCTAGCACCCTC 59.963 55.000 18.83 0.00 0.00 4.30
2639 3220 0.678048 CCACAAAGCTAGCACCCTCC 60.678 60.000 18.83 0.00 0.00 4.30
2640 3221 0.678048 CACAAAGCTAGCACCCTCCC 60.678 60.000 18.83 0.00 0.00 4.30
2641 3222 1.450312 CAAAGCTAGCACCCTCCCG 60.450 63.158 18.83 0.00 0.00 5.14
2642 3223 1.918800 AAAGCTAGCACCCTCCCGT 60.919 57.895 18.83 0.00 0.00 5.28
2643 3224 2.185310 AAAGCTAGCACCCTCCCGTG 62.185 60.000 18.83 0.00 36.80 4.94
2644 3225 4.162690 GCTAGCACCCTCCCGTGG 62.163 72.222 10.63 0.00 34.16 4.94
2652 3233 3.741325 CCTCCCGTGGGATTTCCT 58.259 61.111 8.37 0.00 44.24 3.36
2653 3234 2.925078 CCTCCCGTGGGATTTCCTA 58.075 57.895 8.37 0.00 44.24 2.94
2654 3235 1.435256 CCTCCCGTGGGATTTCCTAT 58.565 55.000 8.37 0.00 44.24 2.57
2655 3236 2.616524 CCTCCCGTGGGATTTCCTATA 58.383 52.381 8.37 0.00 44.24 1.31
2656 3237 2.302157 CCTCCCGTGGGATTTCCTATAC 59.698 54.545 8.37 0.00 44.24 1.47
2657 3238 1.965643 TCCCGTGGGATTTCCTATACG 59.034 52.381 2.72 11.75 39.76 3.06
2658 3239 1.965643 CCCGTGGGATTTCCTATACGA 59.034 52.381 17.01 0.00 38.80 3.43
2659 3240 2.288640 CCCGTGGGATTTCCTATACGAC 60.289 54.545 17.01 0.00 38.80 4.34
2660 3241 2.606308 CCGTGGGATTTCCTATACGACG 60.606 54.545 17.01 0.00 38.80 5.12
2661 3242 2.401351 GTGGGATTTCCTATACGACGC 58.599 52.381 0.00 0.00 36.20 5.19
2662 3243 1.342174 TGGGATTTCCTATACGACGCC 59.658 52.381 0.00 0.00 36.20 5.68
2663 3244 1.668047 GGGATTTCCTATACGACGCCG 60.668 57.143 0.00 0.00 37.77 6.46
2664 3245 1.668047 GGATTTCCTATACGACGCCGG 60.668 57.143 0.00 0.00 40.78 6.13
2665 3246 1.000938 GATTTCCTATACGACGCCGGT 60.001 52.381 1.90 0.00 40.78 5.28
2666 3247 0.101040 TTTCCTATACGACGCCGGTG 59.899 55.000 14.93 14.93 40.78 4.94
2667 3248 0.747644 TTCCTATACGACGCCGGTGA 60.748 55.000 24.59 0.00 40.78 4.02
2668 3249 1.009222 CCTATACGACGCCGGTGAC 60.009 63.158 24.59 15.57 40.78 3.67
2680 3261 2.433664 GGTGACGCCCGTTGTAGG 60.434 66.667 0.00 0.00 0.00 3.18
2681 3262 2.341176 GTGACGCCCGTTGTAGGT 59.659 61.111 0.00 0.00 0.00 3.08
2682 3263 1.301165 GTGACGCCCGTTGTAGGTT 60.301 57.895 0.00 0.00 0.00 3.50
2683 3264 0.881600 GTGACGCCCGTTGTAGGTTT 60.882 55.000 0.00 0.00 0.00 3.27
2684 3265 0.678395 TGACGCCCGTTGTAGGTTTA 59.322 50.000 0.00 0.00 0.00 2.01
2685 3266 1.070821 GACGCCCGTTGTAGGTTTAC 58.929 55.000 0.00 0.00 0.00 2.01
2686 3267 0.681175 ACGCCCGTTGTAGGTTTACT 59.319 50.000 0.00 0.00 0.00 2.24
2687 3268 1.892474 ACGCCCGTTGTAGGTTTACTA 59.108 47.619 0.00 0.00 0.00 1.82
2688 3269 2.094545 ACGCCCGTTGTAGGTTTACTAG 60.095 50.000 0.00 0.00 30.77 2.57
2689 3270 2.274437 GCCCGTTGTAGGTTTACTAGC 58.726 52.381 0.00 0.00 30.77 3.42
2690 3271 2.093816 GCCCGTTGTAGGTTTACTAGCT 60.094 50.000 0.00 0.00 38.39 3.32
2691 3272 3.518590 CCCGTTGTAGGTTTACTAGCTG 58.481 50.000 0.00 0.00 35.80 4.24
2692 3273 3.194116 CCCGTTGTAGGTTTACTAGCTGA 59.806 47.826 0.00 0.00 35.80 4.26
2693 3274 4.322198 CCCGTTGTAGGTTTACTAGCTGAA 60.322 45.833 0.00 0.00 35.80 3.02
2694 3275 4.624452 CCGTTGTAGGTTTACTAGCTGAAC 59.376 45.833 0.00 0.00 35.80 3.18
2695 3276 4.322804 CGTTGTAGGTTTACTAGCTGAACG 59.677 45.833 0.00 0.00 41.15 3.95
2696 3277 3.841643 TGTAGGTTTACTAGCTGAACGC 58.158 45.455 0.00 0.00 35.80 4.84
2697 3278 2.381725 AGGTTTACTAGCTGAACGCC 57.618 50.000 0.00 0.00 40.39 5.68
2698 3279 1.066358 AGGTTTACTAGCTGAACGCCC 60.066 52.381 0.00 0.00 40.39 6.13
2699 3280 1.338389 GGTTTACTAGCTGAACGCCCA 60.338 52.381 0.00 0.00 40.39 5.36
2700 3281 2.629051 GTTTACTAGCTGAACGCCCAT 58.371 47.619 0.00 0.00 40.39 4.00
2701 3282 2.309528 TTACTAGCTGAACGCCCATG 57.690 50.000 0.00 0.00 40.39 3.66
2702 3283 0.179084 TACTAGCTGAACGCCCATGC 60.179 55.000 0.00 0.00 40.39 4.06
2721 3302 3.607777 GTTGCCACGAAACAACGAA 57.392 47.368 0.00 0.00 37.08 3.85
2722 3303 1.185189 GTTGCCACGAAACAACGAAC 58.815 50.000 0.00 0.00 37.08 3.95
2723 3304 1.088306 TTGCCACGAAACAACGAACT 58.912 45.000 0.00 0.00 37.03 3.01
2724 3305 1.088306 TGCCACGAAACAACGAACTT 58.912 45.000 0.00 0.00 37.03 2.66
2725 3306 2.277969 TGCCACGAAACAACGAACTTA 58.722 42.857 0.00 0.00 37.03 2.24
2726 3307 2.285756 TGCCACGAAACAACGAACTTAG 59.714 45.455 0.00 0.00 37.03 2.18
2727 3308 2.540931 GCCACGAAACAACGAACTTAGA 59.459 45.455 0.00 0.00 37.03 2.10
2728 3309 3.001533 GCCACGAAACAACGAACTTAGAA 59.998 43.478 0.00 0.00 37.03 2.10
2729 3310 4.511734 CCACGAAACAACGAACTTAGAAC 58.488 43.478 0.00 0.00 37.03 3.01
2730 3311 4.033129 CCACGAAACAACGAACTTAGAACA 59.967 41.667 0.00 0.00 37.03 3.18
2731 3312 5.446206 CCACGAAACAACGAACTTAGAACAA 60.446 40.000 0.00 0.00 37.03 2.83
2732 3313 5.446899 CACGAAACAACGAACTTAGAACAAC 59.553 40.000 0.00 0.00 37.03 3.32
2733 3314 5.349543 ACGAAACAACGAACTTAGAACAACT 59.650 36.000 0.00 0.00 37.03 3.16
2734 3315 6.128472 ACGAAACAACGAACTTAGAACAACTT 60.128 34.615 0.00 0.00 37.03 2.66
2735 3316 6.739550 CGAAACAACGAACTTAGAACAACTTT 59.260 34.615 0.00 0.00 35.09 2.66
2736 3317 7.252865 CGAAACAACGAACTTAGAACAACTTTG 60.253 37.037 0.00 0.00 35.09 2.77
2737 3318 6.490566 ACAACGAACTTAGAACAACTTTGT 57.509 33.333 0.00 0.00 44.72 2.83
2738 3319 6.540205 ACAACGAACTTAGAACAACTTTGTC 58.460 36.000 0.00 0.00 41.31 3.18
2739 3320 6.148150 ACAACGAACTTAGAACAACTTTGTCA 59.852 34.615 0.00 0.00 41.31 3.58
2740 3321 6.345920 ACGAACTTAGAACAACTTTGTCAG 57.654 37.500 0.00 0.00 41.31 3.51
2741 3322 6.103997 ACGAACTTAGAACAACTTTGTCAGA 58.896 36.000 0.00 0.00 41.31 3.27
2742 3323 6.255887 ACGAACTTAGAACAACTTTGTCAGAG 59.744 38.462 0.00 0.00 41.31 3.35
2743 3324 6.255887 CGAACTTAGAACAACTTTGTCAGAGT 59.744 38.462 0.00 0.00 41.31 3.24
2744 3325 7.515371 CGAACTTAGAACAACTTTGTCAGAGTC 60.515 40.741 0.00 0.00 41.31 3.36
2745 3326 6.879400 ACTTAGAACAACTTTGTCAGAGTCT 58.121 36.000 0.00 0.00 41.31 3.24
2746 3327 7.331791 ACTTAGAACAACTTTGTCAGAGTCTT 58.668 34.615 0.00 0.00 41.31 3.01
2747 3328 7.824779 ACTTAGAACAACTTTGTCAGAGTCTTT 59.175 33.333 0.00 0.00 41.31 2.52
2748 3329 6.428385 AGAACAACTTTGTCAGAGTCTTTG 57.572 37.500 0.00 0.00 41.31 2.77
2749 3330 5.940470 AGAACAACTTTGTCAGAGTCTTTGT 59.060 36.000 0.00 0.00 41.31 2.83
2750 3331 7.103641 AGAACAACTTTGTCAGAGTCTTTGTA 58.896 34.615 4.90 0.00 41.31 2.41
2751 3332 7.770897 AGAACAACTTTGTCAGAGTCTTTGTAT 59.229 33.333 4.90 0.00 41.31 2.29
2752 3333 7.865706 ACAACTTTGTCAGAGTCTTTGTATT 57.134 32.000 2.93 0.00 36.50 1.89
2753 3334 7.697691 ACAACTTTGTCAGAGTCTTTGTATTG 58.302 34.615 2.93 0.28 36.50 1.90
2754 3335 6.867662 ACTTTGTCAGAGTCTTTGTATTGG 57.132 37.500 0.00 0.00 0.00 3.16
2755 3336 5.239525 ACTTTGTCAGAGTCTTTGTATTGGC 59.760 40.000 0.00 0.00 0.00 4.52
2756 3337 4.350368 TGTCAGAGTCTTTGTATTGGCA 57.650 40.909 0.00 0.00 0.00 4.92
2757 3338 4.318332 TGTCAGAGTCTTTGTATTGGCAG 58.682 43.478 0.00 0.00 0.00 4.85
2758 3339 3.126000 GTCAGAGTCTTTGTATTGGCAGC 59.874 47.826 0.00 0.00 0.00 5.25
2759 3340 2.421424 CAGAGTCTTTGTATTGGCAGCC 59.579 50.000 3.66 3.66 0.00 4.85
2760 3341 2.307098 AGAGTCTTTGTATTGGCAGCCT 59.693 45.455 14.15 0.00 0.00 4.58
2761 3342 2.680339 GAGTCTTTGTATTGGCAGCCTC 59.320 50.000 14.15 1.35 0.00 4.70
2762 3343 2.307098 AGTCTTTGTATTGGCAGCCTCT 59.693 45.455 14.15 1.95 0.00 3.69
2763 3344 3.519510 AGTCTTTGTATTGGCAGCCTCTA 59.480 43.478 14.15 0.86 0.00 2.43
2764 3345 4.164988 AGTCTTTGTATTGGCAGCCTCTAT 59.835 41.667 14.15 6.26 0.00 1.98
2765 3346 5.366768 AGTCTTTGTATTGGCAGCCTCTATA 59.633 40.000 14.15 5.26 0.00 1.31
2766 3347 6.055588 GTCTTTGTATTGGCAGCCTCTATAA 58.944 40.000 14.15 6.01 0.00 0.98
2767 3348 6.017852 GTCTTTGTATTGGCAGCCTCTATAAC 60.018 42.308 14.15 3.19 0.00 1.89
2768 3349 5.366482 TTGTATTGGCAGCCTCTATAACA 57.634 39.130 14.15 5.81 0.00 2.41
2769 3350 4.703897 TGTATTGGCAGCCTCTATAACAC 58.296 43.478 14.15 0.00 0.00 3.32
2770 3351 2.309528 TTGGCAGCCTCTATAACACG 57.690 50.000 14.15 0.00 0.00 4.49
2771 3352 1.191535 TGGCAGCCTCTATAACACGT 58.808 50.000 14.15 0.00 0.00 4.49
2772 3353 2.380941 TGGCAGCCTCTATAACACGTA 58.619 47.619 14.15 0.00 0.00 3.57
2773 3354 2.963101 TGGCAGCCTCTATAACACGTAT 59.037 45.455 14.15 0.00 0.00 3.06
2774 3355 3.243737 TGGCAGCCTCTATAACACGTATG 60.244 47.826 14.15 0.00 0.00 2.39
2775 3356 3.318017 GCAGCCTCTATAACACGTATGG 58.682 50.000 0.00 0.00 0.00 2.74
2776 3357 3.005472 GCAGCCTCTATAACACGTATGGA 59.995 47.826 0.00 0.00 0.00 3.41
2777 3358 4.799678 CAGCCTCTATAACACGTATGGAG 58.200 47.826 3.80 3.80 43.90 3.86
2778 3359 3.256136 AGCCTCTATAACACGTATGGAGC 59.744 47.826 5.00 2.19 43.27 4.70
2779 3360 3.822996 CCTCTATAACACGTATGGAGCG 58.177 50.000 5.00 0.00 43.27 5.03
2780 3361 3.235195 CTCTATAACACGTATGGAGCGC 58.765 50.000 0.00 0.00 39.94 5.92
2781 3362 2.030540 TCTATAACACGTATGGAGCGCC 60.031 50.000 2.29 0.00 0.00 6.53
2782 3363 0.249741 ATAACACGTATGGAGCGCCC 60.250 55.000 2.29 5.76 0.00 6.13
2783 3364 1.324740 TAACACGTATGGAGCGCCCT 61.325 55.000 2.29 0.00 35.38 5.19
2784 3365 2.279517 CACGTATGGAGCGCCCTC 60.280 66.667 2.29 0.00 37.37 4.30
2793 3374 3.944476 GAGCGCCCTCCATAATGAT 57.056 52.632 2.29 0.00 31.68 2.45
2794 3375 2.191128 GAGCGCCCTCCATAATGATT 57.809 50.000 2.29 0.00 31.68 2.57
2795 3376 2.079925 GAGCGCCCTCCATAATGATTC 58.920 52.381 2.29 0.00 31.68 2.52
2796 3377 0.798776 GCGCCCTCCATAATGATTCG 59.201 55.000 0.00 0.00 0.00 3.34
2797 3378 0.798776 CGCCCTCCATAATGATTCGC 59.201 55.000 0.00 0.00 0.00 4.70
2798 3379 1.877680 CGCCCTCCATAATGATTCGCA 60.878 52.381 0.00 0.00 0.00 5.10
2799 3380 2.229792 GCCCTCCATAATGATTCGCAA 58.770 47.619 0.00 0.00 0.00 4.85
2800 3381 2.030805 GCCCTCCATAATGATTCGCAAC 60.031 50.000 0.00 0.00 0.00 4.17
2801 3382 2.554032 CCCTCCATAATGATTCGCAACC 59.446 50.000 0.00 0.00 0.00 3.77
2802 3383 3.480470 CCTCCATAATGATTCGCAACCT 58.520 45.455 0.00 0.00 0.00 3.50
2803 3384 3.885297 CCTCCATAATGATTCGCAACCTT 59.115 43.478 0.00 0.00 0.00 3.50
2804 3385 4.339247 CCTCCATAATGATTCGCAACCTTT 59.661 41.667 0.00 0.00 0.00 3.11
2805 3386 5.530915 CCTCCATAATGATTCGCAACCTTTA 59.469 40.000 0.00 0.00 0.00 1.85
2806 3387 6.039270 CCTCCATAATGATTCGCAACCTTTAA 59.961 38.462 0.00 0.00 0.00 1.52
2807 3388 7.397892 TCCATAATGATTCGCAACCTTTAAA 57.602 32.000 0.00 0.00 0.00 1.52
2808 3389 8.006298 TCCATAATGATTCGCAACCTTTAAAT 57.994 30.769 0.00 0.00 0.00 1.40
2809 3390 9.126151 TCCATAATGATTCGCAACCTTTAAATA 57.874 29.630 0.00 0.00 0.00 1.40
2810 3391 9.180678 CCATAATGATTCGCAACCTTTAAATAC 57.819 33.333 0.00 0.00 0.00 1.89
2811 3392 9.729023 CATAATGATTCGCAACCTTTAAATACA 57.271 29.630 0.00 0.00 0.00 2.29
2814 3395 9.482627 AATGATTCGCAACCTTTAAATACAAAA 57.517 25.926 0.00 0.00 0.00 2.44
2815 3396 9.651913 ATGATTCGCAACCTTTAAATACAAAAT 57.348 25.926 0.00 0.00 0.00 1.82
2816 3397 9.482627 TGATTCGCAACCTTTAAATACAAAATT 57.517 25.926 0.00 0.00 0.00 1.82
2817 3398 9.739786 GATTCGCAACCTTTAAATACAAAATTG 57.260 29.630 0.00 0.00 0.00 2.32
2818 3399 8.873215 TTCGCAACCTTTAAATACAAAATTGA 57.127 26.923 0.00 0.00 0.00 2.57
2819 3400 9.482627 TTCGCAACCTTTAAATACAAAATTGAT 57.517 25.926 0.00 0.00 0.00 2.57
2820 3401 9.134734 TCGCAACCTTTAAATACAAAATTGATC 57.865 29.630 0.00 0.00 0.00 2.92
2821 3402 8.379902 CGCAACCTTTAAATACAAAATTGATCC 58.620 33.333 0.00 0.00 0.00 3.36
2822 3403 9.213799 GCAACCTTTAAATACAAAATTGATCCA 57.786 29.630 0.00 0.00 0.00 3.41
2834 3415 8.750515 ACAAAATTGATCCATTCCTTTGTTTT 57.249 26.923 0.00 0.00 31.67 2.43
2835 3416 8.839343 ACAAAATTGATCCATTCCTTTGTTTTC 58.161 29.630 0.00 0.00 31.67 2.29
2836 3417 9.059260 CAAAATTGATCCATTCCTTTGTTTTCT 57.941 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.742589 GGGAGTAGAAAAAGGAAGCGTG 59.257 50.000 0.00 0.00 0.00 5.34
27 28 2.742589 CGTGGGAGTAGAAAAAGGAAGC 59.257 50.000 0.00 0.00 0.00 3.86
28 29 4.267349 TCGTGGGAGTAGAAAAAGGAAG 57.733 45.455 0.00 0.00 0.00 3.46
82 83 2.505405 AGCGAGTGAGTAGACAGTGAA 58.495 47.619 0.00 0.00 0.00 3.18
101 102 6.630045 CACATTGATCATGTATGCACGTTAAG 59.370 38.462 0.00 0.00 45.06 1.85
107 108 4.261322 GGGACACATTGATCATGTATGCAC 60.261 45.833 0.00 0.00 45.06 4.57
110 119 3.499537 CGGGGACACATTGATCATGTATG 59.500 47.826 0.00 0.00 45.06 2.39
118 127 0.752743 CATGCCGGGGACACATTGAT 60.753 55.000 2.18 0.00 0.00 2.57
135 144 2.679934 CGCACGCACACATGACCAT 61.680 57.895 0.00 0.00 0.00 3.55
137 146 4.741781 GCGCACGCACACATGACC 62.742 66.667 10.65 0.00 41.49 4.02
197 208 4.988598 AAGGTGCACGTGCTCGGG 62.989 66.667 37.59 9.89 44.09 5.14
198 209 3.716006 CAAGGTGCACGTGCTCGG 61.716 66.667 37.59 23.16 42.66 4.63
209 220 4.318332 TCTAACATGAGAAGCACAAGGTG 58.682 43.478 0.00 0.00 36.51 4.00
210 221 4.623932 TCTAACATGAGAAGCACAAGGT 57.376 40.909 0.00 0.00 0.00 3.50
224 235 1.338769 GGCACCAGTCGGTTCTAACAT 60.339 52.381 0.00 0.00 46.31 2.71
317 328 6.772360 TTTACTCAATGATTATGCCAGCAA 57.228 33.333 0.00 0.00 0.00 3.91
348 359 1.460743 CGACGATGCAGAAAAGCTTCA 59.539 47.619 0.00 0.00 38.25 3.02
351 362 0.950555 TGCGACGATGCAGAAAAGCT 60.951 50.000 0.00 0.00 40.62 3.74
363 374 5.119588 CCAAACTTAAATAACTCTGCGACGA 59.880 40.000 0.00 0.00 0.00 4.20
367 378 4.412207 GGCCAAACTTAAATAACTCTGCG 58.588 43.478 0.00 0.00 0.00 5.18
368 379 4.155280 TCGGCCAAACTTAAATAACTCTGC 59.845 41.667 2.24 0.00 0.00 4.26
370 381 6.657541 TGAATCGGCCAAACTTAAATAACTCT 59.342 34.615 2.24 0.00 0.00 3.24
398 409 3.963676 GCATCAGCACACCAAACAA 57.036 47.368 0.00 0.00 41.58 2.83
409 420 4.171754 GGAGTGAAGAAAATTGCATCAGC 58.828 43.478 0.00 0.00 42.57 4.26
410 421 5.048224 AGTGGAGTGAAGAAAATTGCATCAG 60.048 40.000 0.00 0.00 0.00 2.90
411 422 4.828939 AGTGGAGTGAAGAAAATTGCATCA 59.171 37.500 0.00 0.00 0.00 3.07
412 423 5.382618 AGTGGAGTGAAGAAAATTGCATC 57.617 39.130 0.00 0.00 0.00 3.91
413 424 5.535333 CAAGTGGAGTGAAGAAAATTGCAT 58.465 37.500 0.00 0.00 0.00 3.96
414 425 4.737352 GCAAGTGGAGTGAAGAAAATTGCA 60.737 41.667 0.00 0.00 40.07 4.08
415 426 3.737774 GCAAGTGGAGTGAAGAAAATTGC 59.262 43.478 0.00 0.00 34.46 3.56
416 427 4.980434 CAGCAAGTGGAGTGAAGAAAATTG 59.020 41.667 0.00 0.00 0.00 2.32
417 428 4.500375 GCAGCAAGTGGAGTGAAGAAAATT 60.500 41.667 0.00 0.00 0.00 1.82
418 429 3.005155 GCAGCAAGTGGAGTGAAGAAAAT 59.995 43.478 0.00 0.00 0.00 1.82
419 430 2.358898 GCAGCAAGTGGAGTGAAGAAAA 59.641 45.455 0.00 0.00 0.00 2.29
420 431 1.949525 GCAGCAAGTGGAGTGAAGAAA 59.050 47.619 0.00 0.00 0.00 2.52
421 432 1.141657 AGCAGCAAGTGGAGTGAAGAA 59.858 47.619 0.00 0.00 0.00 2.52
422 433 0.761187 AGCAGCAAGTGGAGTGAAGA 59.239 50.000 0.00 0.00 0.00 2.87
423 434 0.873054 CAGCAGCAAGTGGAGTGAAG 59.127 55.000 0.00 0.00 0.00 3.02
424 435 1.168407 GCAGCAGCAAGTGGAGTGAA 61.168 55.000 0.00 0.00 41.58 3.18
425 436 1.598962 GCAGCAGCAAGTGGAGTGA 60.599 57.895 0.00 0.00 41.58 3.41
426 437 2.623915 GGCAGCAGCAAGTGGAGTG 61.624 63.158 2.65 0.00 44.61 3.51
427 438 2.282040 GGCAGCAGCAAGTGGAGT 60.282 61.111 2.65 0.00 44.61 3.85
509 520 3.003173 CGGAGTGGGGCTCTTCCA 61.003 66.667 8.81 0.00 43.62 3.53
585 596 3.175152 CAACTCTTCTTCGTCATCCTCG 58.825 50.000 0.00 0.00 0.00 4.63
645 660 0.175760 GAATAGTCGGGTCAGCAGCA 59.824 55.000 0.00 0.00 0.00 4.41
775 790 2.203640 ACCGTGGAGCCAGACAGA 60.204 61.111 0.00 0.00 0.00 3.41
815 831 3.190849 CTGCCGCACGATGTCCAG 61.191 66.667 0.00 0.00 0.00 3.86
822 838 3.648982 CTGCAAACTGCCGCACGA 61.649 61.111 0.00 0.00 44.23 4.35
849 865 1.033746 CCAAGCAACGGGAGCATCAT 61.034 55.000 0.00 0.00 36.25 2.45
850 866 1.675310 CCAAGCAACGGGAGCATCA 60.675 57.895 0.00 0.00 36.25 3.07
888 911 2.676121 CAAGGATTGCGGCACCCA 60.676 61.111 19.01 0.00 40.39 4.51
934 957 1.364171 GAGATAGTGGTGGCGCGAT 59.636 57.895 12.10 0.00 0.00 4.58
961 984 2.283254 GAGCTCGACAATGCTCGAC 58.717 57.895 8.43 3.29 44.72 4.20
962 985 4.794164 GAGCTCGACAATGCTCGA 57.206 55.556 8.43 7.46 44.72 4.04
989 1012 1.077068 GATTGCATCGGACCCCCAA 60.077 57.895 0.00 0.00 0.00 4.12
1131 1168 0.598065 GAAAGCTCCCAACACGCATT 59.402 50.000 0.00 0.00 0.00 3.56
1206 1477 1.712977 GACGCGACGTAGGAGTGGAT 61.713 60.000 15.93 0.00 41.37 3.41
1261 1585 3.180507 AGAGCTCTTCATCCCTGTTCTT 58.819 45.455 11.45 0.00 0.00 2.52
1386 1712 4.702831 TCACACATAGTTGTTGAAGCTCA 58.297 39.130 0.00 0.00 32.34 4.26
1488 1814 5.157940 ACACTTCTAGTTGCTCACATGAT 57.842 39.130 0.00 0.00 0.00 2.45
1550 2032 2.719739 CCAACATCTTGACTGCCTCAT 58.280 47.619 0.00 0.00 0.00 2.90
1708 2231 4.275936 ACGTTTAAGCAAGCTGTGAATCTT 59.724 37.500 0.00 0.00 0.00 2.40
1725 2248 0.321021 TAGCCGCCTCCAAACGTTTA 59.679 50.000 14.20 0.00 0.00 2.01
1763 2320 2.235650 CTGAGAGCCTCCTCAACAATCA 59.764 50.000 0.00 0.00 42.05 2.57
1825 2382 0.330604 ACCATCCATCAAGCAGCTGT 59.669 50.000 16.64 0.00 0.00 4.40
1875 2432 0.238289 CAAATCCGCGCTGACAACTT 59.762 50.000 2.79 0.00 0.00 2.66
1987 2547 2.126071 ACGCGATCAACCCGACAG 60.126 61.111 15.93 0.00 0.00 3.51
2103 2681 9.736023 AAAGATTTGCCTCATCGATTAATTAAC 57.264 29.630 0.00 0.00 0.00 2.01
2150 2728 5.843673 TGATTCTGCCAGTGTTTTGTTAA 57.156 34.783 0.00 0.00 0.00 2.01
2152 2730 4.160252 AGTTGATTCTGCCAGTGTTTTGTT 59.840 37.500 0.00 0.00 0.00 2.83
2154 2732 4.046462 CAGTTGATTCTGCCAGTGTTTTG 58.954 43.478 0.00 0.00 0.00 2.44
2155 2733 4.311816 CAGTTGATTCTGCCAGTGTTTT 57.688 40.909 0.00 0.00 0.00 2.43
2156 2734 3.996150 CAGTTGATTCTGCCAGTGTTT 57.004 42.857 0.00 0.00 0.00 2.83
2165 2743 1.462283 CGTGAGGTGCAGTTGATTCTG 59.538 52.381 0.00 0.00 38.35 3.02
2166 2744 1.344438 TCGTGAGGTGCAGTTGATTCT 59.656 47.619 0.00 0.00 0.00 2.40
2167 2745 1.795768 TCGTGAGGTGCAGTTGATTC 58.204 50.000 0.00 0.00 0.00 2.52
2168 2746 2.350522 GATCGTGAGGTGCAGTTGATT 58.649 47.619 0.00 0.00 0.00 2.57
2169 2747 1.737029 CGATCGTGAGGTGCAGTTGAT 60.737 52.381 7.03 0.00 0.00 2.57
2170 2748 0.388520 CGATCGTGAGGTGCAGTTGA 60.389 55.000 7.03 0.00 0.00 3.18
2171 2749 0.388520 TCGATCGTGAGGTGCAGTTG 60.389 55.000 15.94 0.00 0.00 3.16
2172 2750 0.317160 TTCGATCGTGAGGTGCAGTT 59.683 50.000 15.94 0.00 0.00 3.16
2173 2751 0.109086 CTTCGATCGTGAGGTGCAGT 60.109 55.000 15.94 0.00 0.00 4.40
2174 2752 0.803768 CCTTCGATCGTGAGGTGCAG 60.804 60.000 23.30 7.39 0.00 4.41
2175 2753 1.215382 CCTTCGATCGTGAGGTGCA 59.785 57.895 23.30 0.00 0.00 4.57
2176 2754 1.519455 CCCTTCGATCGTGAGGTGC 60.519 63.158 26.74 0.00 0.00 5.01
2177 2755 0.747255 ATCCCTTCGATCGTGAGGTG 59.253 55.000 26.74 20.83 0.00 4.00
2178 2756 1.033574 GATCCCTTCGATCGTGAGGT 58.966 55.000 26.74 16.31 38.23 3.85
2179 2757 3.875838 GATCCCTTCGATCGTGAGG 57.124 57.895 24.12 24.12 38.23 3.86
2185 2763 2.634940 TCTCCATTGGATCCCTTCGATC 59.365 50.000 9.90 0.00 45.91 3.69
2186 2764 2.694397 TCTCCATTGGATCCCTTCGAT 58.306 47.619 9.90 0.00 0.00 3.59
2187 2765 2.174685 TCTCCATTGGATCCCTTCGA 57.825 50.000 9.90 0.00 0.00 3.71
2188 2766 3.498774 ATTCTCCATTGGATCCCTTCG 57.501 47.619 9.90 0.00 0.00 3.79
2189 2767 5.310409 TGTATTCTCCATTGGATCCCTTC 57.690 43.478 9.90 0.00 0.00 3.46
2190 2768 5.937492 ATGTATTCTCCATTGGATCCCTT 57.063 39.130 9.90 0.00 0.00 3.95
2191 2769 5.373555 TCAATGTATTCTCCATTGGATCCCT 59.626 40.000 9.90 0.00 45.84 4.20
2192 2770 5.474876 GTCAATGTATTCTCCATTGGATCCC 59.525 44.000 9.90 0.00 45.84 3.85
2193 2771 6.064060 TGTCAATGTATTCTCCATTGGATCC 58.936 40.000 5.70 4.20 45.84 3.36
2194 2772 7.500227 TCTTGTCAATGTATTCTCCATTGGATC 59.500 37.037 5.70 0.00 45.84 3.36
2195 2773 7.348815 TCTTGTCAATGTATTCTCCATTGGAT 58.651 34.615 5.70 0.00 45.84 3.41
2196 2774 6.720309 TCTTGTCAATGTATTCTCCATTGGA 58.280 36.000 5.05 5.05 45.84 3.53
2197 2775 6.459298 GCTCTTGTCAATGTATTCTCCATTGG 60.459 42.308 11.84 0.00 45.84 3.16
2198 2776 6.094464 TGCTCTTGTCAATGTATTCTCCATTG 59.906 38.462 6.76 6.76 46.72 2.82
2199 2777 6.182627 TGCTCTTGTCAATGTATTCTCCATT 58.817 36.000 0.00 0.00 32.88 3.16
2200 2778 5.748402 TGCTCTTGTCAATGTATTCTCCAT 58.252 37.500 0.00 0.00 0.00 3.41
2201 2779 5.164620 TGCTCTTGTCAATGTATTCTCCA 57.835 39.130 0.00 0.00 0.00 3.86
2202 2780 6.690194 AATGCTCTTGTCAATGTATTCTCC 57.310 37.500 0.00 0.00 0.00 3.71
2203 2781 7.755591 TCAAATGCTCTTGTCAATGTATTCTC 58.244 34.615 0.00 0.00 0.00 2.87
2204 2782 7.692460 TCAAATGCTCTTGTCAATGTATTCT 57.308 32.000 0.00 0.00 0.00 2.40
2205 2783 8.025445 ACTTCAAATGCTCTTGTCAATGTATTC 58.975 33.333 0.00 0.00 0.00 1.75
2206 2784 7.889469 ACTTCAAATGCTCTTGTCAATGTATT 58.111 30.769 0.00 0.00 0.00 1.89
2207 2785 7.458409 ACTTCAAATGCTCTTGTCAATGTAT 57.542 32.000 0.00 0.00 0.00 2.29
2208 2786 6.882610 ACTTCAAATGCTCTTGTCAATGTA 57.117 33.333 0.00 0.00 0.00 2.29
2209 2787 5.779529 ACTTCAAATGCTCTTGTCAATGT 57.220 34.783 0.00 0.00 0.00 2.71
2210 2788 7.473027 AAAACTTCAAATGCTCTTGTCAATG 57.527 32.000 0.00 0.00 0.00 2.82
2211 2789 6.418819 CGAAAACTTCAAATGCTCTTGTCAAT 59.581 34.615 0.00 0.00 0.00 2.57
2212 2790 5.743398 CGAAAACTTCAAATGCTCTTGTCAA 59.257 36.000 0.00 0.00 0.00 3.18
2213 2791 5.163663 ACGAAAACTTCAAATGCTCTTGTCA 60.164 36.000 0.00 0.00 0.00 3.58
2214 2792 5.172053 CACGAAAACTTCAAATGCTCTTGTC 59.828 40.000 0.00 0.00 0.00 3.18
2215 2793 5.036737 CACGAAAACTTCAAATGCTCTTGT 58.963 37.500 0.00 0.00 0.00 3.16
2216 2794 5.036737 ACACGAAAACTTCAAATGCTCTTG 58.963 37.500 0.00 0.00 0.00 3.02
2217 2795 5.248870 ACACGAAAACTTCAAATGCTCTT 57.751 34.783 0.00 0.00 0.00 2.85
2218 2796 4.900635 ACACGAAAACTTCAAATGCTCT 57.099 36.364 0.00 0.00 0.00 4.09
2219 2797 4.909880 GGTACACGAAAACTTCAAATGCTC 59.090 41.667 0.00 0.00 0.00 4.26
2220 2798 4.261447 GGGTACACGAAAACTTCAAATGCT 60.261 41.667 0.00 0.00 0.00 3.79
2221 2799 3.978855 GGGTACACGAAAACTTCAAATGC 59.021 43.478 0.00 0.00 0.00 3.56
2222 2800 5.176407 TGGGTACACGAAAACTTCAAATG 57.824 39.130 0.00 0.00 0.00 2.32
2223 2801 5.048294 GGATGGGTACACGAAAACTTCAAAT 60.048 40.000 0.00 0.00 0.00 2.32
2224 2802 4.276431 GGATGGGTACACGAAAACTTCAAA 59.724 41.667 0.00 0.00 0.00 2.69
2225 2803 3.816523 GGATGGGTACACGAAAACTTCAA 59.183 43.478 0.00 0.00 0.00 2.69
2226 2804 3.404899 GGATGGGTACACGAAAACTTCA 58.595 45.455 0.00 0.00 0.00 3.02
2227 2805 2.745821 GGGATGGGTACACGAAAACTTC 59.254 50.000 0.00 0.00 0.00 3.01
2228 2806 2.786777 GGGATGGGTACACGAAAACTT 58.213 47.619 0.00 0.00 0.00 2.66
2229 2807 1.338389 CGGGATGGGTACACGAAAACT 60.338 52.381 0.00 0.00 36.15 2.66
2230 2808 1.081094 CGGGATGGGTACACGAAAAC 58.919 55.000 0.00 0.00 36.15 2.43
2231 2809 0.674269 GCGGGATGGGTACACGAAAA 60.674 55.000 0.00 0.00 36.15 2.29
2232 2810 1.078988 GCGGGATGGGTACACGAAA 60.079 57.895 0.00 0.00 36.15 3.46
2233 2811 1.828461 TTGCGGGATGGGTACACGAA 61.828 55.000 0.00 0.00 36.15 3.85
2234 2812 1.828461 TTTGCGGGATGGGTACACGA 61.828 55.000 0.00 0.00 36.15 4.35
2235 2813 0.956410 TTTTGCGGGATGGGTACACG 60.956 55.000 0.00 0.00 37.22 4.49
2236 2814 1.249407 TTTTTGCGGGATGGGTACAC 58.751 50.000 0.00 0.00 0.00 2.90
2237 2815 3.747735 TTTTTGCGGGATGGGTACA 57.252 47.368 0.00 0.00 0.00 2.90
2257 2835 6.904463 ATATGGGGTACACGAAAACTTTTT 57.096 33.333 0.00 0.00 0.00 1.94
2258 2836 6.094464 GCTATATGGGGTACACGAAAACTTTT 59.906 38.462 0.00 0.00 0.00 2.27
2279 2857 0.039074 GCCGTAGCTCATGACGCTAT 60.039 55.000 21.76 6.99 41.52 2.97
2280 2858 1.359117 GCCGTAGCTCATGACGCTA 59.641 57.895 17.57 17.57 38.86 4.26
2282 2860 2.962253 GGCCGTAGCTCATGACGC 60.962 66.667 1.14 8.56 39.73 5.19
2286 2864 1.148157 CTGAACGGCCGTAGCTCATG 61.148 60.000 34.44 19.57 39.73 3.07
2297 2875 2.825836 CCCAGGCATCTGAACGGC 60.826 66.667 0.00 0.00 43.49 5.68
2299 2877 3.197790 CGCCCAGGCATCTGAACG 61.198 66.667 9.78 0.00 43.49 3.95
2306 2887 1.847798 TAAGTCAACCGCCCAGGCAT 61.848 55.000 9.78 0.00 46.52 4.40
2336 2917 1.141053 GGTCGTAGGAGAAATGGCCAT 59.859 52.381 14.09 14.09 0.00 4.40
2339 2920 2.622064 ATGGTCGTAGGAGAAATGGC 57.378 50.000 0.00 0.00 0.00 4.40
2341 2922 5.872617 TGTGTAAATGGTCGTAGGAGAAATG 59.127 40.000 0.00 0.00 0.00 2.32
2342 2923 5.873164 GTGTGTAAATGGTCGTAGGAGAAAT 59.127 40.000 0.00 0.00 0.00 2.17
2346 2927 3.518590 GGTGTGTAAATGGTCGTAGGAG 58.481 50.000 0.00 0.00 0.00 3.69
2401 2982 4.376225 AACCTTCCATTTTCGTTCCCTA 57.624 40.909 0.00 0.00 0.00 3.53
2403 2984 3.572682 AGAAACCTTCCATTTTCGTTCCC 59.427 43.478 0.00 0.00 36.91 3.97
2407 2988 4.760204 CCACTAGAAACCTTCCATTTTCGT 59.240 41.667 0.00 0.00 36.91 3.85
2408 2989 4.156008 CCCACTAGAAACCTTCCATTTTCG 59.844 45.833 0.00 0.00 36.91 3.46
2412 2993 3.916989 AGTCCCACTAGAAACCTTCCATT 59.083 43.478 0.00 0.00 0.00 3.16
2445 3026 3.826157 ACATTTGGTCATTCGTGGTCATT 59.174 39.130 0.00 0.00 0.00 2.57
2446 3027 3.420893 ACATTTGGTCATTCGTGGTCAT 58.579 40.909 0.00 0.00 0.00 3.06
2457 3038 9.231403 CATGAAGCATGATGAGACATTTGGTCA 62.231 40.741 0.00 0.00 45.20 4.02
2492 3073 0.788391 CGAAGCGTGGTAAAGTCACC 59.212 55.000 0.00 0.00 39.20 4.02
2507 3088 2.325082 CCGGTGGTTGGCTTCGAAG 61.325 63.158 21.02 21.02 0.00 3.79
2564 3145 0.882927 TGTAGCATTATTCCGGCGGC 60.883 55.000 23.83 7.60 0.00 6.53
2579 3160 1.659098 GGCCGTGATCGAAAGTTGTAG 59.341 52.381 0.00 0.00 39.71 2.74
2581 3162 0.250124 TGGCCGTGATCGAAAGTTGT 60.250 50.000 0.00 0.00 39.71 3.32
2588 3169 3.366915 TGTCGTGGCCGTGATCGA 61.367 61.111 0.00 0.18 39.71 3.59
2594 3175 1.525077 ATTTGTGTGTCGTGGCCGT 60.525 52.632 0.00 0.00 35.01 5.68
2595 3176 1.082169 CATTTGTGTGTCGTGGCCG 60.082 57.895 0.00 0.00 0.00 6.13
2596 3177 0.040425 GACATTTGTGTGTCGTGGCC 60.040 55.000 0.00 0.00 39.12 5.36
2597 3178 3.454941 GACATTTGTGTGTCGTGGC 57.545 52.632 0.00 0.00 39.12 5.01
2602 3183 3.314913 TGTGGTGATGACATTTGTGTGTC 59.685 43.478 0.30 0.30 46.75 3.67
2603 3184 3.286353 TGTGGTGATGACATTTGTGTGT 58.714 40.909 0.00 0.00 34.39 3.72
2604 3185 3.986442 TGTGGTGATGACATTTGTGTG 57.014 42.857 0.00 0.00 0.00 3.82
2605 3186 4.737352 GCTTTGTGGTGATGACATTTGTGT 60.737 41.667 0.00 0.00 0.00 3.72
2606 3187 3.737266 GCTTTGTGGTGATGACATTTGTG 59.263 43.478 0.00 0.00 0.00 3.33
2607 3188 3.638160 AGCTTTGTGGTGATGACATTTGT 59.362 39.130 0.00 0.00 0.00 2.83
2608 3189 4.247267 AGCTTTGTGGTGATGACATTTG 57.753 40.909 0.00 0.00 0.00 2.32
2609 3190 4.082571 GCTAGCTTTGTGGTGATGACATTT 60.083 41.667 7.70 0.00 0.00 2.32
2610 3191 3.441572 GCTAGCTTTGTGGTGATGACATT 59.558 43.478 7.70 0.00 0.00 2.71
2611 3192 3.012518 GCTAGCTTTGTGGTGATGACAT 58.987 45.455 7.70 0.00 0.00 3.06
2612 3193 2.224499 TGCTAGCTTTGTGGTGATGACA 60.224 45.455 17.23 0.00 0.00 3.58
2613 3194 2.160417 GTGCTAGCTTTGTGGTGATGAC 59.840 50.000 17.23 0.00 0.00 3.06
2614 3195 2.426522 GTGCTAGCTTTGTGGTGATGA 58.573 47.619 17.23 0.00 0.00 2.92
2615 3196 1.470098 GGTGCTAGCTTTGTGGTGATG 59.530 52.381 17.23 0.00 0.00 3.07
2616 3197 1.614317 GGGTGCTAGCTTTGTGGTGAT 60.614 52.381 17.23 0.00 0.00 3.06
2617 3198 0.250727 GGGTGCTAGCTTTGTGGTGA 60.251 55.000 17.23 0.00 0.00 4.02
2618 3199 0.250901 AGGGTGCTAGCTTTGTGGTG 60.251 55.000 17.23 0.00 0.00 4.17
2619 3200 0.036875 GAGGGTGCTAGCTTTGTGGT 59.963 55.000 17.23 0.00 0.00 4.16
2620 3201 0.678048 GGAGGGTGCTAGCTTTGTGG 60.678 60.000 17.23 0.00 0.00 4.17
2621 3202 0.678048 GGGAGGGTGCTAGCTTTGTG 60.678 60.000 17.23 0.00 0.00 3.33
2622 3203 1.685820 GGGAGGGTGCTAGCTTTGT 59.314 57.895 17.23 0.00 0.00 2.83
2623 3204 1.450312 CGGGAGGGTGCTAGCTTTG 60.450 63.158 17.23 0.00 0.00 2.77
2624 3205 1.918800 ACGGGAGGGTGCTAGCTTT 60.919 57.895 17.23 0.00 0.00 3.51
2625 3206 2.284699 ACGGGAGGGTGCTAGCTT 60.285 61.111 17.23 0.00 0.00 3.74
2626 3207 3.077556 CACGGGAGGGTGCTAGCT 61.078 66.667 17.23 0.00 0.00 3.32
2627 3208 4.162690 CCACGGGAGGGTGCTAGC 62.163 72.222 8.10 8.10 36.59 3.42
2628 3209 3.470888 CCCACGGGAGGGTGCTAG 61.471 72.222 0.00 0.00 44.24 3.42
2638 3219 1.965643 TCGTATAGGAAATCCCACGGG 59.034 52.381 14.86 0.00 37.05 5.28
2639 3220 2.606308 CGTCGTATAGGAAATCCCACGG 60.606 54.545 14.86 1.96 37.05 4.94
2640 3221 2.658285 CGTCGTATAGGAAATCCCACG 58.342 52.381 10.80 10.80 37.47 4.94
2641 3222 2.401351 GCGTCGTATAGGAAATCCCAC 58.599 52.381 0.00 0.00 37.41 4.61
2642 3223 1.342174 GGCGTCGTATAGGAAATCCCA 59.658 52.381 0.00 0.00 37.41 4.37
2643 3224 1.668047 CGGCGTCGTATAGGAAATCCC 60.668 57.143 0.00 0.00 36.42 3.85
2644 3225 1.668047 CCGGCGTCGTATAGGAAATCC 60.668 57.143 9.28 0.00 33.95 3.01
2645 3226 1.000938 ACCGGCGTCGTATAGGAAATC 60.001 52.381 9.28 0.00 33.95 2.17
2646 3227 1.035139 ACCGGCGTCGTATAGGAAAT 58.965 50.000 9.28 0.00 33.95 2.17
2647 3228 0.101040 CACCGGCGTCGTATAGGAAA 59.899 55.000 9.28 0.00 33.95 3.13
2648 3229 0.747644 TCACCGGCGTCGTATAGGAA 60.748 55.000 9.28 0.00 33.95 3.36
2649 3230 1.153188 TCACCGGCGTCGTATAGGA 60.153 57.895 9.28 0.00 33.95 2.94
2650 3231 1.009222 GTCACCGGCGTCGTATAGG 60.009 63.158 9.28 0.00 33.95 2.57
2651 3232 1.368493 CGTCACCGGCGTCGTATAG 60.368 63.158 9.28 0.00 33.95 1.31
2652 3233 2.708865 CGTCACCGGCGTCGTATA 59.291 61.111 9.28 0.00 33.95 1.47
2653 3234 4.842091 GCGTCACCGGCGTCGTAT 62.842 66.667 9.28 0.00 33.95 3.06
2663 3244 2.433664 CCTACAACGGGCGTCACC 60.434 66.667 0.00 0.00 37.93 4.02
2664 3245 0.881600 AAACCTACAACGGGCGTCAC 60.882 55.000 0.00 0.00 0.00 3.67
2665 3246 0.678395 TAAACCTACAACGGGCGTCA 59.322 50.000 0.00 0.00 0.00 4.35
2666 3247 1.070821 GTAAACCTACAACGGGCGTC 58.929 55.000 0.00 0.00 0.00 5.19
2667 3248 0.681175 AGTAAACCTACAACGGGCGT 59.319 50.000 0.00 0.00 0.00 5.68
2668 3249 2.533266 CTAGTAAACCTACAACGGGCG 58.467 52.381 0.00 0.00 0.00 6.13
2669 3250 2.093816 AGCTAGTAAACCTACAACGGGC 60.094 50.000 0.00 0.00 0.00 6.13
2670 3251 3.194116 TCAGCTAGTAAACCTACAACGGG 59.806 47.826 0.00 0.00 0.00 5.28
2671 3252 4.445452 TCAGCTAGTAAACCTACAACGG 57.555 45.455 0.00 0.00 0.00 4.44
2672 3253 4.322804 CGTTCAGCTAGTAAACCTACAACG 59.677 45.833 0.00 0.00 0.00 4.10
2673 3254 4.091075 GCGTTCAGCTAGTAAACCTACAAC 59.909 45.833 0.00 0.00 44.04 3.32
2674 3255 4.240096 GCGTTCAGCTAGTAAACCTACAA 58.760 43.478 0.00 0.00 44.04 2.41
2675 3256 3.841643 GCGTTCAGCTAGTAAACCTACA 58.158 45.455 0.00 0.00 44.04 2.74
2703 3284 1.185189 GTTCGTTGTTTCGTGGCAAC 58.815 50.000 0.00 0.00 40.90 4.17
2704 3285 1.088306 AGTTCGTTGTTTCGTGGCAA 58.912 45.000 0.00 0.00 0.00 4.52
2705 3286 1.088306 AAGTTCGTTGTTTCGTGGCA 58.912 45.000 0.00 0.00 0.00 4.92
2706 3287 2.540931 TCTAAGTTCGTTGTTTCGTGGC 59.459 45.455 0.00 0.00 0.00 5.01
2707 3288 4.033129 TGTTCTAAGTTCGTTGTTTCGTGG 59.967 41.667 0.00 0.00 0.00 4.94
2708 3289 5.133707 TGTTCTAAGTTCGTTGTTTCGTG 57.866 39.130 0.00 0.00 0.00 4.35
2709 3290 5.349543 AGTTGTTCTAAGTTCGTTGTTTCGT 59.650 36.000 0.00 0.00 0.00 3.85
2710 3291 5.792631 AGTTGTTCTAAGTTCGTTGTTTCG 58.207 37.500 0.00 0.00 0.00 3.46
2711 3292 7.536281 ACAAAGTTGTTCTAAGTTCGTTGTTTC 59.464 33.333 0.00 0.00 38.47 2.78
2712 3293 7.364970 ACAAAGTTGTTCTAAGTTCGTTGTTT 58.635 30.769 0.00 0.00 38.47 2.83
2713 3294 6.905578 ACAAAGTTGTTCTAAGTTCGTTGTT 58.094 32.000 0.00 0.00 38.47 2.83
2714 3295 6.148150 TGACAAAGTTGTTCTAAGTTCGTTGT 59.852 34.615 0.00 0.00 42.43 3.32
2715 3296 6.539324 TGACAAAGTTGTTCTAAGTTCGTTG 58.461 36.000 0.00 0.00 42.43 4.10
2716 3297 6.592607 TCTGACAAAGTTGTTCTAAGTTCGTT 59.407 34.615 0.00 0.00 42.43 3.85
2717 3298 6.103997 TCTGACAAAGTTGTTCTAAGTTCGT 58.896 36.000 0.00 0.00 42.43 3.85
2718 3299 6.255887 ACTCTGACAAAGTTGTTCTAAGTTCG 59.744 38.462 0.00 0.00 42.43 3.95
2719 3300 7.492994 AGACTCTGACAAAGTTGTTCTAAGTTC 59.507 37.037 0.00 0.00 42.43 3.01
2720 3301 7.331791 AGACTCTGACAAAGTTGTTCTAAGTT 58.668 34.615 0.00 0.00 42.43 2.66
2721 3302 6.879400 AGACTCTGACAAAGTTGTTCTAAGT 58.121 36.000 0.00 1.10 42.43 2.24
2722 3303 7.778470 AAGACTCTGACAAAGTTGTTCTAAG 57.222 36.000 0.00 0.00 42.43 2.18
2723 3304 7.606456 ACAAAGACTCTGACAAAGTTGTTCTAA 59.394 33.333 0.00 0.00 42.43 2.10
2724 3305 7.103641 ACAAAGACTCTGACAAAGTTGTTCTA 58.896 34.615 0.00 0.00 42.43 2.10
2725 3306 5.940470 ACAAAGACTCTGACAAAGTTGTTCT 59.060 36.000 0.00 0.00 42.43 3.01
2726 3307 6.183309 ACAAAGACTCTGACAAAGTTGTTC 57.817 37.500 0.00 0.00 42.43 3.18
2727 3308 7.865706 ATACAAAGACTCTGACAAAGTTGTT 57.134 32.000 0.00 0.00 42.43 2.83
2728 3309 7.201732 CCAATACAAAGACTCTGACAAAGTTGT 60.202 37.037 0.00 0.00 45.65 3.32
2729 3310 7.134815 CCAATACAAAGACTCTGACAAAGTTG 58.865 38.462 0.00 0.00 0.00 3.16
2730 3311 6.238759 GCCAATACAAAGACTCTGACAAAGTT 60.239 38.462 0.00 0.00 0.00 2.66
2731 3312 5.239525 GCCAATACAAAGACTCTGACAAAGT 59.760 40.000 0.00 0.00 0.00 2.66
2732 3313 5.239306 TGCCAATACAAAGACTCTGACAAAG 59.761 40.000 0.00 0.00 0.00 2.77
2733 3314 5.129634 TGCCAATACAAAGACTCTGACAAA 58.870 37.500 0.00 0.00 0.00 2.83
2734 3315 4.713553 TGCCAATACAAAGACTCTGACAA 58.286 39.130 0.00 0.00 0.00 3.18
2735 3316 4.318332 CTGCCAATACAAAGACTCTGACA 58.682 43.478 0.00 0.00 0.00 3.58
2736 3317 3.126000 GCTGCCAATACAAAGACTCTGAC 59.874 47.826 0.00 0.00 0.00 3.51
2737 3318 3.338249 GCTGCCAATACAAAGACTCTGA 58.662 45.455 0.00 0.00 0.00 3.27
2738 3319 2.421424 GGCTGCCAATACAAAGACTCTG 59.579 50.000 15.17 0.00 0.00 3.35
2739 3320 2.307098 AGGCTGCCAATACAAAGACTCT 59.693 45.455 22.65 0.00 0.00 3.24
2740 3321 2.680339 GAGGCTGCCAATACAAAGACTC 59.320 50.000 22.65 0.59 37.63 3.36
2741 3322 2.307098 AGAGGCTGCCAATACAAAGACT 59.693 45.455 22.65 0.00 0.00 3.24
2742 3323 2.716217 AGAGGCTGCCAATACAAAGAC 58.284 47.619 22.65 0.00 0.00 3.01
2743 3324 4.778213 ATAGAGGCTGCCAATACAAAGA 57.222 40.909 22.65 0.00 0.00 2.52
2744 3325 5.822519 TGTTATAGAGGCTGCCAATACAAAG 59.177 40.000 22.65 0.00 0.00 2.77
2745 3326 5.588648 GTGTTATAGAGGCTGCCAATACAAA 59.411 40.000 22.65 8.26 0.00 2.83
2746 3327 5.123227 GTGTTATAGAGGCTGCCAATACAA 58.877 41.667 22.65 5.62 0.00 2.41
2747 3328 4.703897 GTGTTATAGAGGCTGCCAATACA 58.296 43.478 22.65 12.37 0.00 2.29
2748 3329 3.741344 CGTGTTATAGAGGCTGCCAATAC 59.259 47.826 22.65 12.73 0.00 1.89
2749 3330 3.386726 ACGTGTTATAGAGGCTGCCAATA 59.613 43.478 22.65 13.18 0.00 1.90
2750 3331 2.170607 ACGTGTTATAGAGGCTGCCAAT 59.829 45.455 22.65 13.33 0.00 3.16
2751 3332 1.553248 ACGTGTTATAGAGGCTGCCAA 59.447 47.619 22.65 6.13 0.00 4.52
2752 3333 1.191535 ACGTGTTATAGAGGCTGCCA 58.808 50.000 22.65 0.00 0.00 4.92
2753 3334 3.318017 CATACGTGTTATAGAGGCTGCC 58.682 50.000 11.65 11.65 0.00 4.85
2754 3335 3.005472 TCCATACGTGTTATAGAGGCTGC 59.995 47.826 0.00 0.00 0.00 5.25
2755 3336 4.799678 CTCCATACGTGTTATAGAGGCTG 58.200 47.826 0.00 0.00 0.00 4.85
2756 3337 3.256136 GCTCCATACGTGTTATAGAGGCT 59.744 47.826 0.00 0.00 29.18 4.58
2757 3338 3.576648 GCTCCATACGTGTTATAGAGGC 58.423 50.000 0.00 0.00 29.18 4.70
2758 3339 3.822996 CGCTCCATACGTGTTATAGAGG 58.177 50.000 0.00 0.00 29.18 3.69
2759 3340 3.235195 GCGCTCCATACGTGTTATAGAG 58.765 50.000 0.00 0.00 31.07 2.43
2760 3341 2.030540 GGCGCTCCATACGTGTTATAGA 60.031 50.000 7.64 0.00 0.00 1.98
2761 3342 2.325761 GGCGCTCCATACGTGTTATAG 58.674 52.381 7.64 0.00 0.00 1.31
2762 3343 1.000060 GGGCGCTCCATACGTGTTATA 60.000 52.381 7.64 0.00 35.00 0.98
2763 3344 0.249741 GGGCGCTCCATACGTGTTAT 60.250 55.000 7.64 0.00 35.00 1.89
2764 3345 1.142314 GGGCGCTCCATACGTGTTA 59.858 57.895 7.64 0.00 35.00 2.41
2765 3346 2.125269 GGGCGCTCCATACGTGTT 60.125 61.111 7.64 0.00 35.00 3.32
2766 3347 3.075005 AGGGCGCTCCATACGTGT 61.075 61.111 2.00 0.00 38.24 4.49
2767 3348 2.279517 GAGGGCGCTCCATACGTG 60.280 66.667 19.61 0.00 38.24 4.49
2768 3349 3.537874 GGAGGGCGCTCCATACGT 61.538 66.667 37.42 0.00 42.86 3.57
2774 3355 0.326264 ATCATTATGGAGGGCGCTCC 59.674 55.000 36.30 36.30 43.60 4.70
2775 3356 2.079925 GAATCATTATGGAGGGCGCTC 58.920 52.381 21.89 21.89 0.00 5.03
2776 3357 1.609061 CGAATCATTATGGAGGGCGCT 60.609 52.381 7.64 1.38 0.00 5.92
2777 3358 0.798776 CGAATCATTATGGAGGGCGC 59.201 55.000 0.00 0.00 0.00 6.53
2778 3359 0.798776 GCGAATCATTATGGAGGGCG 59.201 55.000 0.00 0.00 0.00 6.13
2779 3360 1.896220 TGCGAATCATTATGGAGGGC 58.104 50.000 0.00 0.00 0.00 5.19
2780 3361 2.554032 GGTTGCGAATCATTATGGAGGG 59.446 50.000 0.00 0.00 0.00 4.30
2781 3362 3.480470 AGGTTGCGAATCATTATGGAGG 58.520 45.455 0.00 0.00 0.00 4.30
2782 3363 5.505173 AAAGGTTGCGAATCATTATGGAG 57.495 39.130 0.00 0.00 0.00 3.86
2783 3364 7.397892 TTTAAAGGTTGCGAATCATTATGGA 57.602 32.000 0.00 0.00 0.00 3.41
2784 3365 9.180678 GTATTTAAAGGTTGCGAATCATTATGG 57.819 33.333 0.00 0.00 0.00 2.74
2785 3366 9.729023 TGTATTTAAAGGTTGCGAATCATTATG 57.271 29.630 0.00 0.00 0.00 1.90
2788 3369 9.482627 TTTTGTATTTAAAGGTTGCGAATCATT 57.517 25.926 0.00 0.00 0.00 2.57
2789 3370 9.651913 ATTTTGTATTTAAAGGTTGCGAATCAT 57.348 25.926 0.00 0.00 0.00 2.45
2790 3371 9.482627 AATTTTGTATTTAAAGGTTGCGAATCA 57.517 25.926 0.00 0.00 0.00 2.57
2791 3372 9.739786 CAATTTTGTATTTAAAGGTTGCGAATC 57.260 29.630 0.00 0.00 0.00 2.52
2792 3373 9.482627 TCAATTTTGTATTTAAAGGTTGCGAAT 57.517 25.926 0.00 0.00 0.00 3.34
2793 3374 8.873215 TCAATTTTGTATTTAAAGGTTGCGAA 57.127 26.923 0.00 0.00 0.00 4.70
2794 3375 9.134734 GATCAATTTTGTATTTAAAGGTTGCGA 57.865 29.630 0.00 0.00 0.00 5.10
2795 3376 8.379902 GGATCAATTTTGTATTTAAAGGTTGCG 58.620 33.333 0.00 0.00 0.00 4.85
2796 3377 9.213799 TGGATCAATTTTGTATTTAAAGGTTGC 57.786 29.630 0.00 0.00 0.00 4.17
2808 3389 9.844257 AAAACAAAGGAATGGATCAATTTTGTA 57.156 25.926 10.45 0.00 37.50 2.41
2809 3390 8.750515 AAAACAAAGGAATGGATCAATTTTGT 57.249 26.923 5.79 5.79 38.82 2.83
2810 3391 9.059260 AGAAAACAAAGGAATGGATCAATTTTG 57.941 29.630 0.00 0.84 34.37 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.