Multiple sequence alignment - TraesCS7B01G418600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G418600 chr7B 100.000 3092 0 0 1 3092 686967443 686964352 0.000000e+00 5710
1 TraesCS7B01G418600 chr7B 91.586 1438 85 21 724 2143 688162806 688164225 0.000000e+00 1953
2 TraesCS7B01G418600 chr7B 91.132 1184 74 11 966 2125 686850026 686851202 0.000000e+00 1576
3 TraesCS7B01G418600 chr7B 85.062 1138 120 22 968 2081 686888458 686887347 0.000000e+00 1114
4 TraesCS7B01G418600 chr7B 85.132 491 62 7 2365 2849 688164499 688164984 2.770000e-135 492
5 TraesCS7B01G418600 chr7B 87.228 368 26 11 514 874 686849487 686849840 1.730000e-107 399
6 TraesCS7B01G418600 chr7B 77.489 653 108 28 6 650 688162185 688162806 3.790000e-94 355
7 TraesCS7B01G418600 chr7B 84.350 377 35 9 511 874 686889016 686888651 6.350000e-92 348
8 TraesCS7B01G418600 chr7A 87.804 1771 145 31 870 2615 696723598 696721874 0.000000e+00 2008
9 TraesCS7B01G418600 chr7A 91.773 1179 69 14 962 2125 696552635 696553800 0.000000e+00 1615
10 TraesCS7B01G418600 chr7A 84.903 1232 128 34 870 2073 696623603 696622402 0.000000e+00 1192
11 TraesCS7B01G418600 chr7A 81.087 846 124 21 37 874 696724452 696723635 0.000000e+00 643
12 TraesCS7B01G418600 chr7A 82.283 508 64 18 475 969 696552112 696552606 1.720000e-112 416
13 TraesCS7B01G418600 chr7A 84.800 375 33 14 511 874 696624030 696623669 3.790000e-94 355
14 TraesCS7B01G418600 chr7D 88.780 1435 122 22 868 2282 604530949 604532364 0.000000e+00 1722
15 TraesCS7B01G418600 chr7D 93.333 1155 68 8 966 2119 603847872 603849018 0.000000e+00 1698
16 TraesCS7B01G418600 chr7D 92.423 1201 70 6 962 2143 604475310 604476508 0.000000e+00 1694
17 TraesCS7B01G418600 chr7D 84.553 1243 129 32 868 2081 603982431 603983639 0.000000e+00 1173
18 TraesCS7B01G418600 chr7D 86.722 723 80 12 2134 2849 604476625 604477338 0.000000e+00 789
19 TraesCS7B01G418600 chr7D 86.333 600 65 14 2376 2964 604532368 604532961 3.360000e-179 638
20 TraesCS7B01G418600 chr7D 86.782 348 29 11 633 967 604474929 604475272 3.770000e-99 372
21 TraesCS7B01G418600 chr7D 84.881 377 32 11 509 874 603982005 603982367 1.050000e-94 357
22 TraesCS7B01G418600 chr7D 83.904 292 24 10 594 874 604530609 604530888 1.100000e-64 257
23 TraesCS7B01G418600 chr7D 85.408 233 26 5 2853 3083 604532961 604533187 5.150000e-58 235
24 TraesCS7B01G418600 chr7D 87.864 206 15 6 675 874 603847479 603847680 1.850000e-57 233
25 TraesCS7B01G418600 chr7D 93.000 100 7 0 870 969 603847741 603847840 2.480000e-31 147
26 TraesCS7B01G418600 chr7D 91.489 94 8 0 2522 2615 603852621 603852714 2.500000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G418600 chr7B 686964352 686967443 3091 True 5710.000000 5710 100.000000 1 3092 1 chr7B.!!$R1 3091
1 TraesCS7B01G418600 chr7B 686849487 686851202 1715 False 987.500000 1576 89.180000 514 2125 2 chr7B.!!$F1 1611
2 TraesCS7B01G418600 chr7B 688162185 688164984 2799 False 933.333333 1953 84.735667 6 2849 3 chr7B.!!$F2 2843
3 TraesCS7B01G418600 chr7B 686887347 686889016 1669 True 731.000000 1114 84.706000 511 2081 2 chr7B.!!$R2 1570
4 TraesCS7B01G418600 chr7A 696721874 696724452 2578 True 1325.500000 2008 84.445500 37 2615 2 chr7A.!!$R2 2578
5 TraesCS7B01G418600 chr7A 696552112 696553800 1688 False 1015.500000 1615 87.028000 475 2125 2 chr7A.!!$F1 1650
6 TraesCS7B01G418600 chr7A 696622402 696624030 1628 True 773.500000 1192 84.851500 511 2073 2 chr7A.!!$R1 1562
7 TraesCS7B01G418600 chr7D 604474929 604477338 2409 False 951.666667 1694 88.642333 633 2849 3 chr7D.!!$F3 2216
8 TraesCS7B01G418600 chr7D 603982005 603983639 1634 False 765.000000 1173 84.717000 509 2081 2 chr7D.!!$F2 1572
9 TraesCS7B01G418600 chr7D 604530609 604533187 2578 False 713.000000 1722 86.106250 594 3083 4 chr7D.!!$F4 2489
10 TraesCS7B01G418600 chr7D 603847479 603852714 5235 False 552.000000 1698 91.421500 675 2615 4 chr7D.!!$F1 1940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 953 0.324943 ACGAACCCCACCTCAAGATG 59.675 55.0 0.0 0.0 0.00 2.90 F
941 1074 0.755327 TAGCTCATGCCCGTCTAGCA 60.755 55.0 0.0 0.0 45.94 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 1935 0.464735 CCCGTATTTCCGCCATTGGA 60.465 55.0 6.95 0.0 35.83 3.53 R
2936 6637 0.175760 CGGAGCATTCGGAGGAAGAA 59.824 55.0 0.00 0.0 35.19 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.020984 TGGTTTTCTTCACGAAGCCTTT 58.979 40.909 1.75 0.00 38.28 3.11
26 27 3.066203 TGGTTTTCTTCACGAAGCCTTTC 59.934 43.478 1.75 0.00 38.28 2.62
27 28 3.315470 GGTTTTCTTCACGAAGCCTTTCT 59.685 43.478 1.75 0.00 38.28 2.52
31 32 4.602340 TCTTCACGAAGCCTTTCTAAGT 57.398 40.909 1.75 0.00 38.28 2.24
35 36 1.697982 ACGAAGCCTTTCTAAGTGGGT 59.302 47.619 0.00 0.00 0.00 4.51
50 51 5.499004 AAGTGGGTAAAGTGCTTCTGATA 57.501 39.130 0.00 0.00 0.00 2.15
52 53 5.246307 AGTGGGTAAAGTGCTTCTGATAAC 58.754 41.667 0.00 0.00 0.00 1.89
74 75 4.750098 ACGTTTCATATAGAAGATTGGCCG 59.250 41.667 0.00 0.00 37.57 6.13
75 76 4.750098 CGTTTCATATAGAAGATTGGCCGT 59.250 41.667 0.00 0.00 37.57 5.68
78 79 4.883083 TCATATAGAAGATTGGCCGTGTC 58.117 43.478 0.00 0.00 0.00 3.67
86 87 5.817816 AGAAGATTGGCCGTGTCTATAAAAG 59.182 40.000 0.00 0.00 0.00 2.27
91 92 6.827586 TTGGCCGTGTCTATAAAAGAAAAT 57.172 33.333 0.00 0.00 35.47 1.82
93 94 6.848451 TGGCCGTGTCTATAAAAGAAAATTC 58.152 36.000 0.00 0.00 35.47 2.17
97 99 7.524065 CCGTGTCTATAAAAGAAAATTCGGTT 58.476 34.615 0.00 0.00 35.47 4.44
122 124 8.080363 TGAAAACCATAAAACTAAACAAGGGT 57.920 30.769 0.00 0.00 0.00 4.34
127 129 5.694458 CCATAAAACTAAACAAGGGTGCAAC 59.306 40.000 0.00 0.00 0.00 4.17
143 146 5.241662 GGTGCAACTGATTAAAGAGACTCT 58.758 41.667 0.00 0.00 36.74 3.24
144 147 6.398918 GGTGCAACTGATTAAAGAGACTCTA 58.601 40.000 5.14 0.00 36.74 2.43
153 156 8.912787 TGATTAAAGAGACTCTATCGACAAAC 57.087 34.615 5.14 0.00 0.00 2.93
158 161 7.392494 AAGAGACTCTATCGACAAACATACA 57.608 36.000 5.14 0.00 0.00 2.29
159 162 7.575414 AGAGACTCTATCGACAAACATACAT 57.425 36.000 2.19 0.00 0.00 2.29
160 163 8.001881 AGAGACTCTATCGACAAACATACATT 57.998 34.615 2.19 0.00 0.00 2.71
211 214 7.489160 TCATATATATGGGTGTATTGCGTCTC 58.511 38.462 20.18 0.00 34.50 3.36
218 221 4.873827 TGGGTGTATTGCGTCTCTAATTTC 59.126 41.667 0.00 0.00 0.00 2.17
219 222 4.873827 GGGTGTATTGCGTCTCTAATTTCA 59.126 41.667 0.00 0.00 0.00 2.69
223 226 7.968405 GGTGTATTGCGTCTCTAATTTCAAAAT 59.032 33.333 0.00 0.00 0.00 1.82
224 227 9.341899 GTGTATTGCGTCTCTAATTTCAAAATT 57.658 29.630 6.04 6.04 41.24 1.82
229 232 9.737427 TTGCGTCTCTAATTTCAAAATTAAACA 57.263 25.926 8.75 1.00 39.57 2.83
230 233 9.737427 TGCGTCTCTAATTTCAAAATTAAACAA 57.263 25.926 8.75 0.00 39.57 2.83
257 260 8.838649 AAAAAGGGGTATACTGCATCTTTATT 57.161 30.769 2.25 2.63 0.00 1.40
259 262 8.919777 AAAGGGGTATACTGCATCTTTATTAC 57.080 34.615 2.25 0.00 0.00 1.89
263 266 7.764901 GGGGTATACTGCATCTTTATTACTAGC 59.235 40.741 2.25 0.00 0.00 3.42
264 267 7.764901 GGGTATACTGCATCTTTATTACTAGCC 59.235 40.741 2.25 0.00 0.00 3.93
266 269 5.630415 ACTGCATCTTTATTACTAGCCCA 57.370 39.130 0.00 0.00 0.00 5.36
275 278 5.968676 TTATTACTAGCCCAACATCCACT 57.031 39.130 0.00 0.00 0.00 4.00
325 328 4.485163 CGTGCCTAATTTTCTTTCTTGGG 58.515 43.478 0.00 0.00 0.00 4.12
327 330 4.283467 GTGCCTAATTTTCTTTCTTGGGGT 59.717 41.667 0.00 0.00 0.00 4.95
330 333 5.221641 GCCTAATTTTCTTTCTTGGGGTGTT 60.222 40.000 0.00 0.00 0.00 3.32
342 345 5.070001 TCTTGGGGTGTTGAAAAGATGTAG 58.930 41.667 0.00 0.00 0.00 2.74
344 347 3.139397 TGGGGTGTTGAAAAGATGTAGGT 59.861 43.478 0.00 0.00 0.00 3.08
349 352 6.294342 GGGTGTTGAAAAGATGTAGGTTAACC 60.294 42.308 17.41 17.41 0.00 2.85
351 354 5.470777 TGTTGAAAAGATGTAGGTTAACCCG 59.529 40.000 21.30 0.00 38.74 5.28
352 355 4.581868 TGAAAAGATGTAGGTTAACCCGG 58.418 43.478 21.30 0.00 38.74 5.73
353 356 4.041938 TGAAAAGATGTAGGTTAACCCGGT 59.958 41.667 21.30 5.54 38.74 5.28
381 384 7.639113 TTTTTCTGTTCAAGTCAATGGTACT 57.361 32.000 0.00 0.00 0.00 2.73
387 390 3.093814 TCAAGTCAATGGTACTAGGCGA 58.906 45.455 0.00 0.00 0.00 5.54
389 392 2.453521 AGTCAATGGTACTAGGCGACA 58.546 47.619 0.00 0.00 0.00 4.35
391 394 3.451178 AGTCAATGGTACTAGGCGACATT 59.549 43.478 0.00 0.00 32.43 2.71
394 397 5.233689 GTCAATGGTACTAGGCGACATTTAC 59.766 44.000 0.00 0.00 30.00 2.01
395 398 5.105269 TCAATGGTACTAGGCGACATTTACA 60.105 40.000 0.00 0.00 30.00 2.41
396 399 4.804868 TGGTACTAGGCGACATTTACAA 57.195 40.909 0.00 0.00 0.00 2.41
399 402 4.802563 GGTACTAGGCGACATTTACAAGAC 59.197 45.833 0.00 0.00 0.00 3.01
403 406 5.651139 ACTAGGCGACATTTACAAGACTCTA 59.349 40.000 0.00 0.00 0.00 2.43
406 409 5.869888 AGGCGACATTTACAAGACTCTAAAG 59.130 40.000 0.00 0.00 0.00 1.85
407 410 5.446073 GGCGACATTTACAAGACTCTAAAGC 60.446 44.000 0.00 0.00 0.00 3.51
411 414 4.612264 TTTACAAGACTCTAAAGCGGGT 57.388 40.909 0.00 0.00 0.00 5.28
414 417 2.367567 ACAAGACTCTAAAGCGGGTGAA 59.632 45.455 0.00 0.00 0.00 3.18
422 425 3.773119 TCTAAAGCGGGTGAAATAGGACT 59.227 43.478 0.00 0.00 0.00 3.85
425 428 1.761198 AGCGGGTGAAATAGGACTACC 59.239 52.381 0.00 0.00 0.00 3.18
426 429 1.202615 GCGGGTGAAATAGGACTACCC 60.203 57.143 0.00 0.00 45.95 3.69
427 430 2.904697 GGGTGAAATAGGACTACCCG 57.095 55.000 0.00 0.00 41.34 5.28
428 431 1.415289 GGGTGAAATAGGACTACCCGG 59.585 57.143 0.00 0.00 41.34 5.73
443 446 1.002773 ACCCGGGGCATCGATTTATAC 59.997 52.381 27.92 0.00 0.00 1.47
444 447 1.677820 CCCGGGGCATCGATTTATACC 60.678 57.143 14.71 0.00 0.00 2.73
453 456 7.229907 GGGGCATCGATTTATACCTAAGAAAAA 59.770 37.037 0.00 0.00 0.00 1.94
465 468 0.666374 AAGAAAAACCCGGCGACTTG 59.334 50.000 9.30 0.00 0.00 3.16
466 469 0.464916 AGAAAAACCCGGCGACTTGT 60.465 50.000 9.30 0.00 0.00 3.16
474 477 2.081462 CCCGGCGACTTGTAGATTTTT 58.919 47.619 9.30 0.00 0.00 1.94
478 481 5.321516 CCGGCGACTTGTAGATTTTTAAAG 58.678 41.667 9.30 0.00 0.00 1.85
496 500 3.665745 AAGGCTGGCAAAAAGTACATG 57.334 42.857 3.38 0.00 0.00 3.21
538 542 7.480760 TTATTAAAGAAAATCAAGGCAGGCT 57.519 32.000 0.00 0.00 0.00 4.58
672 677 1.831652 CTTCTGTCCCCGCTCCACTT 61.832 60.000 0.00 0.00 0.00 3.16
673 678 1.827399 TTCTGTCCCCGCTCCACTTC 61.827 60.000 0.00 0.00 0.00 3.01
861 948 2.522436 ACGACGAACCCCACCTCA 60.522 61.111 0.00 0.00 0.00 3.86
862 949 2.091102 GACGACGAACCCCACCTCAA 62.091 60.000 0.00 0.00 0.00 3.02
863 950 1.374252 CGACGAACCCCACCTCAAG 60.374 63.158 0.00 0.00 0.00 3.02
864 951 1.812686 CGACGAACCCCACCTCAAGA 61.813 60.000 0.00 0.00 0.00 3.02
865 952 0.613777 GACGAACCCCACCTCAAGAT 59.386 55.000 0.00 0.00 0.00 2.40
866 953 0.324943 ACGAACCCCACCTCAAGATG 59.675 55.000 0.00 0.00 0.00 2.90
912 1036 4.847444 GCCTCCTCCAAGCCTCGC 62.847 72.222 0.00 0.00 0.00 5.03
941 1074 0.755327 TAGCTCATGCCCGTCTAGCA 60.755 55.000 0.00 0.00 45.94 3.49
946 1079 2.041922 TGCCCGTCTAGCATCCCT 60.042 61.111 0.00 0.00 34.69 4.20
1093 1299 3.391382 CGGTGACCAGGGTCCTCC 61.391 72.222 15.53 15.43 43.97 4.30
1231 1437 2.571216 AAGTACGCCGACCTGCAGT 61.571 57.895 13.81 0.11 0.00 4.40
1295 1519 2.404186 CGTGGACGACATCGGAGGA 61.404 63.158 6.21 0.00 44.95 3.71
1561 1785 1.881973 ACGTCAGCCTCGTAAGTAACA 59.118 47.619 0.00 0.00 39.78 2.41
1574 1798 4.571580 CGTAAGTAACAAACAGACACCCAA 59.428 41.667 0.00 0.00 0.00 4.12
1576 1800 6.424509 CGTAAGTAACAAACAGACACCCAATA 59.575 38.462 0.00 0.00 0.00 1.90
1585 1810 3.073062 ACAGACACCCAATAGCAACTTCT 59.927 43.478 0.00 0.00 0.00 2.85
1614 1839 1.066152 TCTTCCTCGTGAGCATCGATG 59.934 52.381 21.27 21.27 38.61 3.84
1690 1935 0.405585 CAGGTGGTGAAGGATGGGTT 59.594 55.000 0.00 0.00 0.00 4.11
1818 2063 4.373116 GCGCCGAGGACAAGACCA 62.373 66.667 0.00 0.00 0.00 4.02
1953 2201 3.933048 CTTGTCCAGCAGCAGGGGG 62.933 68.421 3.59 0.00 0.00 5.40
1956 2204 2.614969 TCCAGCAGCAGGGGGAAT 60.615 61.111 3.59 0.00 0.00 3.01
2075 2326 3.749064 GTCGGCGCTCTCTGGTCA 61.749 66.667 7.64 0.00 0.00 4.02
2234 5712 2.994995 ACGGACGCATCCCTGACA 60.995 61.111 0.00 0.00 42.83 3.58
2256 5734 4.657824 CGGTGCCCGTTCGTGTCT 62.658 66.667 5.56 0.00 42.73 3.41
2258 5736 3.041940 GTGCCCGTTCGTGTCTGG 61.042 66.667 0.00 0.00 0.00 3.86
2263 5741 1.292223 CCGTTCGTGTCTGGATGGT 59.708 57.895 0.00 0.00 0.00 3.55
2288 5766 4.681978 GGCGTCACGGTGGCTTCT 62.682 66.667 11.39 0.00 0.00 2.85
2294 5772 2.049433 ACGGTGGCTTCTTCGACG 60.049 61.111 0.00 0.00 0.00 5.12
2295 5773 2.257371 CGGTGGCTTCTTCGACGA 59.743 61.111 0.00 0.00 0.00 4.20
2296 5774 1.153823 CGGTGGCTTCTTCGACGAT 60.154 57.895 0.00 0.00 0.00 3.73
2307 5785 4.147449 CGACGATGGCTGCCCTGA 62.147 66.667 17.53 0.00 0.00 3.86
2308 5786 2.507944 GACGATGGCTGCCCTGAT 59.492 61.111 17.53 2.43 0.00 2.90
2354 5832 1.522355 ATTGATCGCGGCAGACCTG 60.522 57.895 6.13 0.00 0.00 4.00
2420 5898 2.975799 GCCGCGAAACCTGTGGAA 60.976 61.111 8.23 0.00 39.39 3.53
2427 5905 2.487762 GCGAAACCTGTGGAAATCATCA 59.512 45.455 0.00 0.00 0.00 3.07
2471 5952 2.079170 TCTGAGCCGAGGAAGATCAT 57.921 50.000 0.00 0.00 0.00 2.45
2475 5956 1.410517 GAGCCGAGGAAGATCATGACA 59.589 52.381 0.00 0.00 0.00 3.58
2478 5959 2.677902 GCCGAGGAAGATCATGACAACA 60.678 50.000 0.00 0.00 0.00 3.33
2481 5962 5.359756 CCGAGGAAGATCATGACAACAATA 58.640 41.667 0.00 0.00 0.00 1.90
2492 5973 2.224185 TGACAACAATAGTGGCACGACT 60.224 45.455 12.71 0.00 0.00 4.18
2496 5977 4.097286 ACAACAATAGTGGCACGACTTTTT 59.903 37.500 12.71 4.00 0.00 1.94
2517 5998 6.986904 TTTTGTATGCATACCATGACGTAA 57.013 33.333 29.36 14.39 35.34 3.18
2520 6216 5.606505 TGTATGCATACCATGACGTAATGT 58.393 37.500 29.36 3.11 35.34 2.71
2570 6266 7.808856 TGTAAACTGGTGAACTGTTTGTAAAAC 59.191 33.333 14.59 5.96 46.50 2.43
2592 6288 3.549471 CAGTGAGCGTATGAACTGATGTC 59.451 47.826 6.92 0.00 42.09 3.06
2607 6303 2.162208 TGATGTCGAATTTTCTGCTGCC 59.838 45.455 0.00 0.00 0.00 4.85
2617 6313 3.829886 TTTCTGCTGCCAAATTAGACG 57.170 42.857 0.00 0.00 0.00 4.18
2618 6314 1.737838 TCTGCTGCCAAATTAGACGG 58.262 50.000 0.00 0.00 0.00 4.79
2620 6316 1.131126 CTGCTGCCAAATTAGACGGTG 59.869 52.381 0.00 0.00 0.00 4.94
2621 6317 0.179163 GCTGCCAAATTAGACGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
2622 6318 1.453155 CTGCCAAATTAGACGGTGCT 58.547 50.000 0.00 0.00 0.00 4.40
2623 6319 1.131126 CTGCCAAATTAGACGGTGCTG 59.869 52.381 0.00 0.00 0.00 4.41
2646 6346 7.651704 GCTGAAAATTAGCCAACTGTCTTTAAA 59.348 33.333 0.00 0.00 35.15 1.52
2666 6366 3.610040 AATATGCTTCTGGACGTGTGA 57.390 42.857 0.00 0.00 0.00 3.58
2679 6379 7.162761 TCTGGACGTGTGAAAAATTTAGGATA 58.837 34.615 0.00 0.00 0.00 2.59
2718 6418 0.246910 TACTTAACGCATCGCCCACA 59.753 50.000 0.00 0.00 0.00 4.17
2729 6429 0.180642 TCGCCCACAGTTTACAACCA 59.819 50.000 0.00 0.00 0.00 3.67
2866 6567 6.374333 TGTTAAGTGCTGACTGAAGAAAAAGT 59.626 34.615 0.00 0.00 30.61 2.66
2877 6578 4.364860 TGAAGAAAAAGTTTTAAGGCCGC 58.635 39.130 0.24 0.00 0.00 6.53
2880 6581 1.415200 AAAAGTTTTAAGGCCGCCCA 58.585 45.000 5.55 0.00 0.00 5.36
2881 6582 0.966179 AAAGTTTTAAGGCCGCCCAG 59.034 50.000 5.55 0.00 0.00 4.45
2882 6583 0.178973 AAGTTTTAAGGCCGCCCAGT 60.179 50.000 5.55 0.00 0.00 4.00
2887 6588 3.622060 TAAGGCCGCCCAGTGAAGC 62.622 63.158 5.55 0.00 0.00 3.86
2898 6599 1.004277 CAGTGAAGCGACCGTCAGAC 61.004 60.000 0.00 0.00 30.08 3.51
2901 6602 2.915659 AAGCGACCGTCAGACCCA 60.916 61.111 0.00 0.00 0.00 4.51
2907 6608 1.000060 CGACCGTCAGACCCACTTAAA 60.000 52.381 0.00 0.00 0.00 1.52
2917 6618 1.491754 ACCCACTTAAACTTGACCCGT 59.508 47.619 0.00 0.00 0.00 5.28
2920 6621 2.485835 CCACTTAAACTTGACCCGTCCA 60.486 50.000 0.00 0.00 0.00 4.02
2936 6637 2.099263 CGTCCACTCTCGTAACCATGAT 59.901 50.000 0.00 0.00 0.00 2.45
2945 6646 4.099573 TCTCGTAACCATGATTCTTCCTCC 59.900 45.833 0.00 0.00 0.00 4.30
2990 6801 5.332506 CGTGGCATGACAAATTTTCTCAAAC 60.333 40.000 0.58 0.00 0.00 2.93
2992 6803 6.922957 GTGGCATGACAAATTTTCTCAAACTA 59.077 34.615 0.58 0.00 0.00 2.24
2996 6807 7.148853 GCATGACAAATTTTCTCAAACTAGCTG 60.149 37.037 0.00 0.00 0.00 4.24
2997 6808 7.333528 TGACAAATTTTCTCAAACTAGCTGT 57.666 32.000 0.00 0.00 0.00 4.40
3000 6811 9.087424 GACAAATTTTCTCAAACTAGCTGTTTT 57.913 29.630 10.38 0.93 45.69 2.43
3032 6843 1.000955 CTACCGAGGGCATACCATGAC 59.999 57.143 0.00 0.00 43.89 3.06
3060 6871 5.495640 TGCCAAGTTTCAGGTTTTTCAAAT 58.504 33.333 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.394729 AGGCTTCGTGAAGAAAACCAATA 58.605 39.130 13.60 0.00 40.79 1.90
14 15 2.076863 CCCACTTAGAAAGGCTTCGTG 58.923 52.381 0.00 3.69 36.61 4.35
16 17 2.474410 ACCCACTTAGAAAGGCTTCG 57.526 50.000 0.00 0.00 36.61 3.79
20 21 3.190744 GCACTTTACCCACTTAGAAAGGC 59.809 47.826 0.00 0.00 33.99 4.35
25 26 4.591498 TCAGAAGCACTTTACCCACTTAGA 59.409 41.667 0.00 0.00 0.00 2.10
26 27 4.894784 TCAGAAGCACTTTACCCACTTAG 58.105 43.478 0.00 0.00 0.00 2.18
27 28 4.967084 TCAGAAGCACTTTACCCACTTA 57.033 40.909 0.00 0.00 0.00 2.24
31 32 4.250464 CGTTATCAGAAGCACTTTACCCA 58.750 43.478 0.00 0.00 0.00 4.51
35 36 7.667043 ATGAAACGTTATCAGAAGCACTTTA 57.333 32.000 0.00 0.00 0.00 1.85
50 51 5.236478 CGGCCAATCTTCTATATGAAACGTT 59.764 40.000 2.24 0.00 33.79 3.99
52 53 4.750098 ACGGCCAATCTTCTATATGAAACG 59.250 41.667 2.24 0.00 33.79 3.60
68 69 6.827586 ATTTTCTTTTATAGACACGGCCAA 57.172 33.333 2.24 0.00 30.90 4.52
74 75 9.887406 TTCAACCGAATTTTCTTTTATAGACAC 57.113 29.630 0.00 0.00 30.90 3.67
97 99 7.982354 CACCCTTGTTTAGTTTTATGGTTTTCA 59.018 33.333 0.00 0.00 0.00 2.69
109 111 3.626930 TCAGTTGCACCCTTGTTTAGTT 58.373 40.909 0.00 0.00 0.00 2.24
111 113 4.853924 AATCAGTTGCACCCTTGTTTAG 57.146 40.909 0.00 0.00 0.00 1.85
112 114 6.547880 TCTTTAATCAGTTGCACCCTTGTTTA 59.452 34.615 0.00 0.00 0.00 2.01
115 117 4.469657 TCTTTAATCAGTTGCACCCTTGT 58.530 39.130 0.00 0.00 0.00 3.16
119 121 4.327680 AGTCTCTTTAATCAGTTGCACCC 58.672 43.478 0.00 0.00 0.00 4.61
122 124 6.975197 CGATAGAGTCTCTTTAATCAGTTGCA 59.025 38.462 7.89 0.00 39.76 4.08
189 192 8.584063 TTAGAGACGCAATACACCCATATATA 57.416 34.615 0.00 0.00 0.00 0.86
190 193 7.476540 TTAGAGACGCAATACACCCATATAT 57.523 36.000 0.00 0.00 0.00 0.86
196 199 4.873827 TGAAATTAGAGACGCAATACACCC 59.126 41.667 0.00 0.00 0.00 4.61
232 235 8.838649 AATAAAGATGCAGTATACCCCTTTTT 57.161 30.769 0.00 0.00 0.00 1.94
233 236 9.350951 GTAATAAAGATGCAGTATACCCCTTTT 57.649 33.333 0.00 0.00 0.00 2.27
234 237 8.724310 AGTAATAAAGATGCAGTATACCCCTTT 58.276 33.333 0.00 5.31 0.00 3.11
235 238 8.276453 AGTAATAAAGATGCAGTATACCCCTT 57.724 34.615 0.00 0.00 0.00 3.95
236 239 7.873699 AGTAATAAAGATGCAGTATACCCCT 57.126 36.000 0.00 0.00 0.00 4.79
237 240 7.764901 GCTAGTAATAAAGATGCAGTATACCCC 59.235 40.741 0.00 0.00 0.00 4.95
238 241 7.764901 GGCTAGTAATAAAGATGCAGTATACCC 59.235 40.741 0.00 0.00 0.00 3.69
239 242 7.764901 GGGCTAGTAATAAAGATGCAGTATACC 59.235 40.741 0.00 0.00 0.00 2.73
240 243 8.311836 TGGGCTAGTAATAAAGATGCAGTATAC 58.688 37.037 0.00 0.00 0.00 1.47
241 244 8.430573 TGGGCTAGTAATAAAGATGCAGTATA 57.569 34.615 0.00 0.00 0.00 1.47
242 245 7.316393 TGGGCTAGTAATAAAGATGCAGTAT 57.684 36.000 0.00 0.00 0.00 2.12
243 246 6.740944 TGGGCTAGTAATAAAGATGCAGTA 57.259 37.500 0.00 0.00 0.00 2.74
244 247 5.630415 TGGGCTAGTAATAAAGATGCAGT 57.370 39.130 0.00 0.00 0.00 4.40
245 248 5.822519 TGTTGGGCTAGTAATAAAGATGCAG 59.177 40.000 0.00 0.00 0.00 4.41
246 249 5.750524 TGTTGGGCTAGTAATAAAGATGCA 58.249 37.500 0.00 0.00 0.00 3.96
247 250 6.072452 GGATGTTGGGCTAGTAATAAAGATGC 60.072 42.308 0.00 0.00 0.00 3.91
248 251 6.998074 TGGATGTTGGGCTAGTAATAAAGATG 59.002 38.462 0.00 0.00 0.00 2.90
249 252 6.998673 GTGGATGTTGGGCTAGTAATAAAGAT 59.001 38.462 0.00 0.00 0.00 2.40
250 253 6.157994 AGTGGATGTTGGGCTAGTAATAAAGA 59.842 38.462 0.00 0.00 0.00 2.52
251 254 6.357367 AGTGGATGTTGGGCTAGTAATAAAG 58.643 40.000 0.00 0.00 0.00 1.85
252 255 6.321821 AGTGGATGTTGGGCTAGTAATAAA 57.678 37.500 0.00 0.00 0.00 1.40
255 258 5.968676 TTAGTGGATGTTGGGCTAGTAAT 57.031 39.130 0.00 0.00 0.00 1.89
257 260 4.781087 ACTTTAGTGGATGTTGGGCTAGTA 59.219 41.667 0.00 0.00 0.00 1.82
259 262 3.941483 CACTTTAGTGGATGTTGGGCTAG 59.059 47.826 1.88 0.00 42.10 3.42
263 266 7.461182 TTTTATCACTTTAGTGGATGTTGGG 57.539 36.000 9.82 0.00 45.65 4.12
264 267 8.356657 TGTTTTTATCACTTTAGTGGATGTTGG 58.643 33.333 9.82 0.00 45.65 3.77
300 303 4.846779 AGAAAGAAAATTAGGCACGCAA 57.153 36.364 0.00 0.00 0.00 4.85
301 304 4.545610 CAAGAAAGAAAATTAGGCACGCA 58.454 39.130 0.00 0.00 0.00 5.24
303 306 4.485163 CCCAAGAAAGAAAATTAGGCACG 58.515 43.478 0.00 0.00 0.00 5.34
309 312 7.425224 TTCAACACCCCAAGAAAGAAAATTA 57.575 32.000 0.00 0.00 0.00 1.40
315 318 4.605183 TCTTTTCAACACCCCAAGAAAGA 58.395 39.130 0.00 0.00 32.29 2.52
325 328 6.294342 GGGTTAACCTACATCTTTTCAACACC 60.294 42.308 23.69 0.00 35.85 4.16
327 330 5.470777 CGGGTTAACCTACATCTTTTCAACA 59.529 40.000 23.69 0.00 36.97 3.33
330 333 4.041938 ACCGGGTTAACCTACATCTTTTCA 59.958 41.667 23.69 0.00 36.97 2.69
358 361 7.444183 CCTAGTACCATTGACTTGAACAGAAAA 59.556 37.037 0.00 0.00 0.00 2.29
362 365 4.631813 GCCTAGTACCATTGACTTGAACAG 59.368 45.833 0.00 0.00 0.00 3.16
366 369 3.093814 TCGCCTAGTACCATTGACTTGA 58.906 45.455 0.00 0.00 0.00 3.02
367 370 3.187700 GTCGCCTAGTACCATTGACTTG 58.812 50.000 0.00 0.00 0.00 3.16
373 376 5.347620 TGTAAATGTCGCCTAGTACCATT 57.652 39.130 0.00 0.00 0.00 3.16
376 379 4.802563 GTCTTGTAAATGTCGCCTAGTACC 59.197 45.833 0.00 0.00 0.00 3.34
381 384 6.519679 TTAGAGTCTTGTAAATGTCGCCTA 57.480 37.500 0.00 0.00 0.00 3.93
387 390 4.935808 CCCGCTTTAGAGTCTTGTAAATGT 59.064 41.667 0.00 0.00 0.00 2.71
389 392 4.935808 CACCCGCTTTAGAGTCTTGTAAAT 59.064 41.667 0.00 0.00 0.00 1.40
391 394 3.575256 TCACCCGCTTTAGAGTCTTGTAA 59.425 43.478 0.00 0.00 0.00 2.41
394 397 2.743636 TCACCCGCTTTAGAGTCTTG 57.256 50.000 0.00 0.00 0.00 3.02
395 398 3.764237 TTTCACCCGCTTTAGAGTCTT 57.236 42.857 0.00 0.00 0.00 3.01
396 399 3.983044 ATTTCACCCGCTTTAGAGTCT 57.017 42.857 0.00 0.00 0.00 3.24
399 402 4.120589 GTCCTATTTCACCCGCTTTAGAG 58.879 47.826 0.00 0.00 0.00 2.43
403 406 3.370209 GGTAGTCCTATTTCACCCGCTTT 60.370 47.826 0.00 0.00 0.00 3.51
406 409 1.202615 GGGTAGTCCTATTTCACCCGC 60.203 57.143 0.00 0.00 39.54 6.13
407 410 2.904697 GGGTAGTCCTATTTCACCCG 57.095 55.000 0.00 0.00 39.54 5.28
411 414 1.797320 CCCCGGGTAGTCCTATTTCA 58.203 55.000 21.85 0.00 0.00 2.69
414 417 0.104620 ATGCCCCGGGTAGTCCTATT 60.105 55.000 21.85 0.00 0.00 1.73
422 425 1.354101 ATAAATCGATGCCCCGGGTA 58.646 50.000 21.85 8.68 0.00 3.69
425 428 1.278127 AGGTATAAATCGATGCCCCGG 59.722 52.381 0.00 0.00 32.28 5.73
426 429 2.762535 AGGTATAAATCGATGCCCCG 57.237 50.000 0.00 0.00 32.28 5.73
427 430 5.416271 TCTTAGGTATAAATCGATGCCCC 57.584 43.478 0.00 0.00 32.28 5.80
428 431 7.739498 TTTTCTTAGGTATAAATCGATGCCC 57.261 36.000 0.00 0.00 32.28 5.36
443 446 0.800631 GTCGCCGGGTTTTTCTTAGG 59.199 55.000 2.18 0.00 0.00 2.69
444 447 1.804601 AGTCGCCGGGTTTTTCTTAG 58.195 50.000 2.18 0.00 0.00 2.18
453 456 0.611714 AAATCTACAAGTCGCCGGGT 59.388 50.000 2.18 0.00 0.00 5.28
465 468 7.441157 ACTTTTTGCCAGCCTTTAAAAATCTAC 59.559 33.333 0.00 0.00 33.24 2.59
466 469 7.505258 ACTTTTTGCCAGCCTTTAAAAATCTA 58.495 30.769 0.00 0.00 33.24 1.98
474 477 4.586841 ACATGTACTTTTTGCCAGCCTTTA 59.413 37.500 0.00 0.00 0.00 1.85
478 481 4.399303 AGATACATGTACTTTTTGCCAGCC 59.601 41.667 7.96 0.00 0.00 4.85
511 515 9.987272 GCCTGCCTTGATTTTCTTTAATAATAT 57.013 29.630 0.00 0.00 0.00 1.28
538 542 2.208431 CAACAAAGAAAATTGCGGGCA 58.792 42.857 0.00 0.00 33.52 5.36
614 619 0.108019 GGGTCTCCGTTTGGTCAAGT 59.892 55.000 0.00 0.00 36.30 3.16
672 677 7.942341 AGTAAGTGGGAATTGTTTGATTAGTGA 59.058 33.333 0.00 0.00 0.00 3.41
673 678 8.110860 AGTAAGTGGGAATTGTTTGATTAGTG 57.889 34.615 0.00 0.00 0.00 2.74
861 948 9.504708 CATCAATTTATAGAGAGGAAGCATCTT 57.495 33.333 0.00 0.00 0.00 2.40
862 949 8.658619 ACATCAATTTATAGAGAGGAAGCATCT 58.341 33.333 0.00 0.00 0.00 2.90
863 950 8.845413 ACATCAATTTATAGAGAGGAAGCATC 57.155 34.615 0.00 0.00 0.00 3.91
864 951 8.658619 AGACATCAATTTATAGAGAGGAAGCAT 58.341 33.333 0.00 0.00 0.00 3.79
865 952 7.930325 CAGACATCAATTTATAGAGAGGAAGCA 59.070 37.037 0.00 0.00 0.00 3.91
866 953 7.095271 GCAGACATCAATTTATAGAGAGGAAGC 60.095 40.741 0.00 0.00 0.00 3.86
909 1033 0.323451 TGAGCTAGAGAAGTGGGCGA 60.323 55.000 0.00 0.00 0.00 5.54
912 1036 1.202627 GGCATGAGCTAGAGAAGTGGG 60.203 57.143 0.00 0.00 41.70 4.61
941 1074 3.436243 AGTCGAAGAAGAAGACAGGGAT 58.564 45.455 0.00 0.00 39.69 3.85
946 1079 4.341235 TGGAAGAAGTCGAAGAAGAAGACA 59.659 41.667 0.00 0.00 39.69 3.41
1075 1281 2.283676 GAGGACCCTGGTCACCGA 60.284 66.667 17.64 0.00 46.20 4.69
1093 1299 2.977772 GACATGAAGTCCTCCTCCAG 57.022 55.000 0.00 0.00 41.56 3.86
1543 1767 4.053295 TGTTTGTTACTTACGAGGCTGAC 58.947 43.478 0.00 0.00 0.00 3.51
1561 1785 3.832527 AGTTGCTATTGGGTGTCTGTTT 58.167 40.909 0.00 0.00 0.00 2.83
1574 1798 5.078411 AGACGATGAACAGAAGTTGCTAT 57.922 39.130 0.00 0.00 38.30 2.97
1576 1800 3.393089 AGACGATGAACAGAAGTTGCT 57.607 42.857 0.00 0.00 38.30 3.91
1585 1810 1.883926 TCACGAGGAAGACGATGAACA 59.116 47.619 0.00 0.00 34.70 3.18
1614 1839 1.120437 CGCCAAGAAACTTTCGTTGC 58.880 50.000 4.15 4.15 32.65 4.17
1615 1840 2.372350 GACGCCAAGAAACTTTCGTTG 58.628 47.619 0.00 2.46 32.65 4.10
1616 1841 1.332686 GGACGCCAAGAAACTTTCGTT 59.667 47.619 0.00 0.00 34.03 3.85
1617 1842 0.942252 GGACGCCAAGAAACTTTCGT 59.058 50.000 0.00 0.00 34.02 3.85
1631 1864 5.171337 CGCAAATTGATTAGTTAATGGACGC 59.829 40.000 0.00 0.00 0.00 5.19
1690 1935 0.464735 CCCGTATTTCCGCCATTGGA 60.465 55.000 6.95 0.00 35.83 3.53
1818 2063 2.032634 CGTACGTGGCCACAAGCAT 61.033 57.895 34.16 16.32 46.50 3.79
1950 2198 0.541863 TCGAAGCTTCCTGATTCCCC 59.458 55.000 20.62 0.00 37.77 4.81
1953 2201 1.281899 CCGTCGAAGCTTCCTGATTC 58.718 55.000 20.62 2.03 37.69 2.52
1956 2204 2.261671 GCCGTCGAAGCTTCCTGA 59.738 61.111 20.62 10.25 0.00 3.86
2075 2326 1.903877 CGGTCAGGCAACAGGGATCT 61.904 60.000 0.00 0.00 41.41 2.75
2143 5621 3.329889 TCATGCACCGGCCCTCTT 61.330 61.111 0.00 0.00 40.13 2.85
2226 5704 3.059982 CACCGCTCTTGTCAGGGA 58.940 61.111 0.00 0.00 0.00 4.20
2256 5734 4.028490 GCCCACGTGGACCATCCA 62.028 66.667 36.07 0.00 45.98 3.41
2286 5764 2.184322 GGCAGCCATCGTCGAAGA 59.816 61.111 6.55 2.86 0.00 2.87
2288 5766 3.390521 AGGGCAGCCATCGTCGAA 61.391 61.111 15.19 0.00 0.00 3.71
2294 5772 0.959553 CATTCATCAGGGCAGCCATC 59.040 55.000 15.19 0.00 0.00 3.51
2295 5773 1.113517 GCATTCATCAGGGCAGCCAT 61.114 55.000 15.19 1.92 0.00 4.40
2296 5774 1.755395 GCATTCATCAGGGCAGCCA 60.755 57.895 15.19 0.00 0.00 4.75
2326 5804 1.368345 CGCGATCAATGAAGGTGCCA 61.368 55.000 0.00 0.00 0.00 4.92
2331 5809 0.811219 TCTGCCGCGATCAATGAAGG 60.811 55.000 8.23 0.00 0.00 3.46
2414 5892 4.384940 TCGTCAAGTTGATGATTTCCACA 58.615 39.130 21.37 0.00 37.48 4.17
2420 5898 3.055530 AGGAGCTCGTCAAGTTGATGATT 60.056 43.478 24.49 16.95 41.15 2.57
2427 5905 1.621992 TCAGAGGAGCTCGTCAAGTT 58.378 50.000 31.77 13.47 35.36 2.66
2471 5952 2.139917 GTCGTGCCACTATTGTTGTCA 58.860 47.619 0.00 0.00 0.00 3.58
2475 5956 4.911514 AAAAAGTCGTGCCACTATTGTT 57.088 36.364 0.00 0.00 0.00 2.83
2496 5977 6.052360 ACATTACGTCATGGTATGCATACAA 58.948 36.000 32.19 25.16 34.98 2.41
2498 5979 7.827819 ATACATTACGTCATGGTATGCATAC 57.172 36.000 25.74 25.74 0.00 2.39
2500 5981 9.448438 AAATATACATTACGTCATGGTATGCAT 57.552 29.630 13.94 3.79 0.00 3.96
2501 5982 8.840833 AAATATACATTACGTCATGGTATGCA 57.159 30.769 13.94 0.00 0.00 3.96
2506 5987 9.278978 TGCATAAAATATACATTACGTCATGGT 57.721 29.630 13.94 5.15 0.00 3.55
2570 6266 3.515630 ACATCAGTTCATACGCTCACTG 58.484 45.455 0.00 0.00 38.42 3.66
2592 6288 5.287035 GTCTAATTTGGCAGCAGAAAATTCG 59.713 40.000 13.17 9.30 35.64 3.34
2607 6303 6.251376 GCTAATTTTCAGCACCGTCTAATTTG 59.749 38.462 0.00 0.00 38.93 2.32
2617 6313 3.005791 ACAGTTGGCTAATTTTCAGCACC 59.994 43.478 1.35 0.00 40.95 5.01
2618 6314 4.022849 AGACAGTTGGCTAATTTTCAGCAC 60.023 41.667 1.35 0.00 40.95 4.40
2620 6316 4.773323 AGACAGTTGGCTAATTTTCAGC 57.227 40.909 0.00 0.00 38.35 4.26
2621 6317 9.528018 TTTTAAAGACAGTTGGCTAATTTTCAG 57.472 29.630 0.00 0.00 29.55 3.02
2646 6346 3.610040 TCACACGTCCAGAAGCATATT 57.390 42.857 0.00 0.00 0.00 1.28
2679 6379 4.634443 AGTACGCCGCAGAGATAAAAATTT 59.366 37.500 0.00 0.00 0.00 1.82
2686 6386 2.286595 CGTTAAGTACGCCGCAGAGATA 60.287 50.000 0.00 0.00 44.26 1.98
2708 6408 2.611974 GTTGTAAACTGTGGGCGATG 57.388 50.000 0.00 0.00 45.32 3.84
2729 6429 7.030075 TGATTTATCATCGCACATGATTTGT 57.970 32.000 12.23 1.42 39.30 2.83
2782 6483 8.422577 TCGGATTCATCTGATATTTCTAGGAA 57.577 34.615 0.00 0.00 37.28 3.36
2796 6497 6.773976 TTTGGCTATTTTTCGGATTCATCT 57.226 33.333 0.00 0.00 0.00 2.90
2797 6498 7.826260 TTTTTGGCTATTTTTCGGATTCATC 57.174 32.000 0.00 0.00 0.00 2.92
2837 6538 8.445275 TTTCTTCAGTCAGCACTTAACATTTA 57.555 30.769 0.00 0.00 0.00 1.40
2850 6551 6.697455 GGCCTTAAAACTTTTTCTTCAGTCAG 59.303 38.462 0.00 0.00 0.00 3.51
2854 6555 4.444388 GCGGCCTTAAAACTTTTTCTTCAG 59.556 41.667 0.00 0.00 0.00 3.02
2866 6567 0.178987 TTCACTGGGCGGCCTTAAAA 60.179 50.000 29.87 15.10 0.00 1.52
2877 6578 2.432628 GACGGTCGCTTCACTGGG 60.433 66.667 0.00 0.00 0.00 4.45
2880 6581 1.286260 GTCTGACGGTCGCTTCACT 59.714 57.895 3.34 0.00 0.00 3.41
2881 6582 1.733399 GGTCTGACGGTCGCTTCAC 60.733 63.158 3.34 0.00 0.00 3.18
2882 6583 2.649034 GGTCTGACGGTCGCTTCA 59.351 61.111 3.34 0.00 0.00 3.02
2887 6588 0.599558 TTAAGTGGGTCTGACGGTCG 59.400 55.000 3.34 0.00 0.00 4.79
2898 6599 2.148768 GACGGGTCAAGTTTAAGTGGG 58.851 52.381 0.00 0.00 0.00 4.61
2901 6602 2.436911 AGTGGACGGGTCAAGTTTAAGT 59.563 45.455 0.75 0.00 0.00 2.24
2907 6608 1.524863 CGAGAGTGGACGGGTCAAGT 61.525 60.000 0.75 0.00 0.00 3.16
2936 6637 0.175760 CGGAGCATTCGGAGGAAGAA 59.824 55.000 0.00 0.00 35.19 2.52
3015 6826 0.397941 ATGTCATGGTATGCCCTCGG 59.602 55.000 0.00 0.00 0.00 4.63
3032 6843 3.947910 AACCTGAAACTTGGCATGATG 57.052 42.857 7.45 0.00 0.00 3.07
3042 6853 8.869109 TGGATATGATTTGAAAAACCTGAAACT 58.131 29.630 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.