Multiple sequence alignment - TraesCS7B01G418400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G418400 chr7B 100.000 3109 0 0 1 3109 686849061 686852169 0.000000e+00 5742
1 TraesCS7B01G418400 chr7B 91.688 1179 70 17 966 2142 688163055 688164207 0.000000e+00 1609
2 TraesCS7B01G418400 chr7B 91.132 1184 74 11 966 2142 686966478 686965319 0.000000e+00 1576
3 TraesCS7B01G418400 chr7B 83.199 1738 158 62 425 2098 686889014 686887347 0.000000e+00 1469
4 TraesCS7B01G418400 chr7B 87.228 368 26 11 427 780 686966930 686966570 1.740000e-107 399
5 TraesCS7B01G418400 chr7B 88.806 134 7 5 634 767 688162812 688162937 1.150000e-34 158
6 TraesCS7B01G418400 chr7B 82.184 174 13 7 384 545 688162631 688162798 1.950000e-27 134
7 TraesCS7B01G418400 chr7A 89.672 2314 160 32 826 3108 696552500 696554765 0.000000e+00 2876
8 TraesCS7B01G418400 chr7A 87.272 1752 135 52 410 2142 696724015 696722333 0.000000e+00 1919
9 TraesCS7B01G418400 chr7A 85.752 1151 112 26 961 2098 696623505 696622394 0.000000e+00 1170
10 TraesCS7B01G418400 chr7A 85.749 414 26 17 354 746 696552082 696552483 1.040000e-109 407
11 TraesCS7B01G418400 chr7A 80.435 552 40 32 425 932 696624028 696623501 2.950000e-95 359
12 TraesCS7B01G418400 chr7A 77.612 335 62 10 9 333 30088937 30088606 1.140000e-44 191
13 TraesCS7B01G418400 chr7A 86.982 169 18 3 2321 2489 669403348 669403184 1.470000e-43 187
14 TraesCS7B01G418400 chr7A 80.074 271 30 8 2238 2489 436796495 436796760 2.460000e-41 180
15 TraesCS7B01G418400 chr7D 91.024 1582 89 19 571 2136 603847474 603849018 0.000000e+00 2085
16 TraesCS7B01G418400 chr7D 90.869 1369 87 8 793 2138 604475133 604476486 0.000000e+00 1801
17 TraesCS7B01G418400 chr7D 89.283 1185 98 18 968 2142 604531042 604532207 0.000000e+00 1458
18 TraesCS7B01G418400 chr7D 82.879 1723 151 52 427 2098 603982010 603983639 0.000000e+00 1415
19 TraesCS7B01G418400 chr7D 82.213 461 66 9 1 452 603846814 603847267 1.750000e-102 383
20 TraesCS7B01G418400 chr7D 80.440 455 32 26 504 931 604530616 604531040 8.430000e-76 294
21 TraesCS7B01G418400 chr7D 85.714 196 20 6 544 738 604474939 604475127 1.890000e-47 200
22 TraesCS7B01G418400 chr7D 78.868 265 35 15 2235 2489 221839622 221839369 3.210000e-35 159
23 TraesCS7B01G418400 chr7D 75.375 333 72 10 9 333 11414338 11414008 5.370000e-33 152
24 TraesCS7B01G418400 chrUn 82.661 248 33 3 2237 2477 79228705 79228949 8.740000e-51 211
25 TraesCS7B01G418400 chr5D 81.481 270 29 9 2238 2489 230163538 230163272 5.260000e-48 202
26 TraesCS7B01G418400 chr5D 81.250 256 33 11 2235 2489 119678379 119678138 3.160000e-45 193
27 TraesCS7B01G418400 chr5D 88.961 154 15 2 2325 2477 34061517 34061669 4.090000e-44 189
28 TraesCS7B01G418400 chr5D 81.197 234 31 9 2239 2464 540117512 540117284 3.190000e-40 176
29 TraesCS7B01G418400 chr4D 81.641 256 34 10 2235 2489 319326645 319326402 1.890000e-47 200
30 TraesCS7B01G418400 chr2D 80.934 257 35 10 2237 2489 600168140 600168386 1.140000e-44 191
31 TraesCS7B01G418400 chr4A 77.101 345 65 12 9 344 1133709 1134048 1.470000e-43 187
32 TraesCS7B01G418400 chr1B 80.385 260 35 8 2238 2489 45201513 45201764 1.900000e-42 183
33 TraesCS7B01G418400 chr6A 79.121 273 48 9 64 332 432420411 432420678 2.460000e-41 180
34 TraesCS7B01G418400 chr6A 77.037 270 60 2 65 333 116704077 116704345 1.490000e-33 154
35 TraesCS7B01G418400 chr1D 76.807 332 66 8 9 332 434321074 434321402 3.190000e-40 176
36 TraesCS7B01G418400 chr3B 77.133 293 63 4 61 351 611725746 611726036 1.920000e-37 167
37 TraesCS7B01G418400 chr3A 77.407 270 56 3 64 333 745641202 745640938 4.150000e-34 156
38 TraesCS7B01G418400 chr2B 79.399 233 26 10 2238 2452 566452241 566452013 8.990000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G418400 chr7B 686849061 686852169 3108 False 5742.000000 5742 100.000000 1 3109 1 chr7B.!!$F1 3108
1 TraesCS7B01G418400 chr7B 686887347 686889014 1667 True 1469.000000 1469 83.199000 425 2098 1 chr7B.!!$R1 1673
2 TraesCS7B01G418400 chr7B 686965319 686966930 1611 True 987.500000 1576 89.180000 427 2142 2 chr7B.!!$R2 1715
3 TraesCS7B01G418400 chr7B 688162631 688164207 1576 False 633.666667 1609 87.559333 384 2142 3 chr7B.!!$F2 1758
4 TraesCS7B01G418400 chr7A 696722333 696724015 1682 True 1919.000000 1919 87.272000 410 2142 1 chr7A.!!$R3 1732
5 TraesCS7B01G418400 chr7A 696552082 696554765 2683 False 1641.500000 2876 87.710500 354 3108 2 chr7A.!!$F2 2754
6 TraesCS7B01G418400 chr7A 696622394 696624028 1634 True 764.500000 1170 83.093500 425 2098 2 chr7A.!!$R4 1673
7 TraesCS7B01G418400 chr7D 603982010 603983639 1629 False 1415.000000 1415 82.879000 427 2098 1 chr7D.!!$F1 1671
8 TraesCS7B01G418400 chr7D 603846814 603849018 2204 False 1234.000000 2085 86.618500 1 2136 2 chr7D.!!$F2 2135
9 TraesCS7B01G418400 chr7D 604474939 604476486 1547 False 1000.500000 1801 88.291500 544 2138 2 chr7D.!!$F3 1594
10 TraesCS7B01G418400 chr7D 604530616 604532207 1591 False 876.000000 1458 84.861500 504 2142 2 chr7D.!!$F4 1638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
405 414 0.035176 AGCCGGCAAAAAGGTACGTA 59.965 50.0 31.54 0.0 0.00 3.57 F
1035 1285 0.032515 TGATCGGGCAGACTTCCCTA 60.033 55.0 8.66 0.0 41.69 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1266 1534 0.689080 ATTGGTGGTGGTTGTTGGCA 60.689 50.0 0.0 0.0 0.00 4.92 R
2573 2882 0.750546 CCCCACATGACAGAGCCATG 60.751 60.0 0.0 0.0 45.03 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.273606 CGACATAGATTCCCATCGGCT 59.726 52.381 0.00 0.00 34.17 5.52
24 25 2.672478 CGACATAGATTCCCATCGGCTC 60.672 54.545 0.00 0.00 34.17 4.70
32 33 2.511452 CCCATCGGCTCCTAGGGTG 61.511 68.421 9.46 3.54 34.75 4.61
53 54 0.739813 CAAGGTTAGGGTTCTCGGCG 60.740 60.000 0.00 0.00 0.00 6.46
56 57 1.588082 GTTAGGGTTCTCGGCGACA 59.412 57.895 4.99 0.00 0.00 4.35
73 74 3.004616 GACACGTCGACGAAATTTAGC 57.995 47.619 41.52 17.98 43.02 3.09
99 100 7.096271 CGTCAGATTCTTTAGATCGATTCAAGG 60.096 40.741 0.00 0.00 0.00 3.61
100 101 7.170658 GTCAGATTCTTTAGATCGATTCAAGGG 59.829 40.741 0.00 0.00 0.00 3.95
107 108 3.262420 AGATCGATTCAAGGGTTCAACG 58.738 45.455 0.00 0.00 0.00 4.10
108 109 1.803334 TCGATTCAAGGGTTCAACGG 58.197 50.000 0.00 0.00 0.00 4.44
110 111 1.243902 GATTCAAGGGTTCAACGGCA 58.756 50.000 0.00 0.00 0.00 5.69
136 137 4.522971 GACTCCAGGGCGATTGTC 57.477 61.111 0.00 0.00 0.00 3.18
137 138 1.153349 GACTCCAGGGCGATTGTCC 60.153 63.158 0.00 0.00 41.57 4.02
143 144 4.878878 GGGCGATTGTCCTTAGGG 57.121 61.111 0.00 0.00 36.72 3.53
154 159 2.114670 CCTTAGGGGCACGTGCATG 61.115 63.158 38.60 20.80 44.36 4.06
156 161 1.369091 CTTAGGGGCACGTGCATGAC 61.369 60.000 38.60 24.97 44.36 3.06
176 181 4.634443 TGACGACTTTCTAGATGTCATCGA 59.366 41.667 19.67 1.27 35.62 3.59
177 182 5.297029 TGACGACTTTCTAGATGTCATCGAT 59.703 40.000 19.67 0.00 35.62 3.59
182 187 7.520776 CGACTTTCTAGATGTCATCGATAAGGT 60.521 40.741 19.67 7.65 33.27 3.50
189 194 4.028852 TGTCATCGATAAGGTCAAGTCG 57.971 45.455 0.00 0.00 35.55 4.18
191 196 2.128035 CATCGATAAGGTCAAGTCGGC 58.872 52.381 0.00 0.00 35.01 5.54
192 197 1.471119 TCGATAAGGTCAAGTCGGCT 58.529 50.000 0.00 0.00 35.01 5.52
195 200 0.460311 ATAAGGTCAAGTCGGCTCCG 59.540 55.000 1.14 1.14 41.35 4.63
204 209 2.042741 TCGGCTCCGGTATGGGAA 60.043 61.111 8.59 0.00 40.25 3.97
205 210 1.686455 TCGGCTCCGGTATGGGAAA 60.686 57.895 8.59 0.00 40.25 3.13
223 228 1.503818 AATGTGACAACGGCGTGTCC 61.504 55.000 27.30 21.36 46.13 4.02
234 239 4.403137 CGTGTCCGCGGTCCGTTA 62.403 66.667 27.15 0.06 34.38 3.18
252 257 2.034048 TATGACGGCGGCAATGGCTA 62.034 55.000 23.82 3.60 40.87 3.93
258 263 2.106683 GCGGCAATGGCTACTCGTT 61.107 57.895 5.02 0.00 40.87 3.85
269 274 1.207329 GCTACTCGTTGGTCCAGGAAT 59.793 52.381 0.00 0.00 0.00 3.01
281 286 6.823286 TGGTCCAGGAATCTTGATGTAATA 57.177 37.500 0.00 0.00 0.00 0.98
312 317 6.189677 TGTTTGAGGTGTTTTGTACTTCTG 57.810 37.500 0.00 0.00 0.00 3.02
315 320 6.827586 TTGAGGTGTTTTGTACTTCTGTTT 57.172 33.333 0.00 0.00 0.00 2.83
316 321 6.189677 TGAGGTGTTTTGTACTTCTGTTTG 57.810 37.500 0.00 0.00 0.00 2.93
318 323 6.128117 TGAGGTGTTTTGTACTTCTGTTTGAC 60.128 38.462 0.00 0.00 0.00 3.18
334 339 9.542462 TTCTGTTTGACCTTTATAATAGATCCG 57.458 33.333 0.00 0.00 0.00 4.18
336 341 7.221450 TGTTTGACCTTTATAATAGATCCGGG 58.779 38.462 0.00 0.00 0.00 5.73
341 346 7.291651 TGACCTTTATAATAGATCCGGGTCTTT 59.708 37.037 25.19 18.22 40.65 2.52
342 347 8.042286 ACCTTTATAATAGATCCGGGTCTTTT 57.958 34.615 25.19 23.21 0.00 2.27
343 348 8.500238 ACCTTTATAATAGATCCGGGTCTTTTT 58.500 33.333 25.19 18.80 0.00 1.94
403 412 0.312729 AAAGCCGGCAAAAAGGTACG 59.687 50.000 31.54 0.00 0.00 3.67
404 413 0.820482 AAGCCGGCAAAAAGGTACGT 60.820 50.000 31.54 0.00 0.00 3.57
405 414 0.035176 AGCCGGCAAAAAGGTACGTA 59.965 50.000 31.54 0.00 0.00 3.57
406 415 0.166597 GCCGGCAAAAAGGTACGTAC 59.833 55.000 24.80 17.56 0.00 3.67
407 416 1.510776 CCGGCAAAAAGGTACGTACA 58.489 50.000 26.02 0.00 0.00 2.90
408 417 2.078392 CCGGCAAAAAGGTACGTACAT 58.922 47.619 26.02 17.76 0.00 2.29
416 425 9.426837 GGCAAAAAGGTACGTACATATATATCA 57.573 33.333 26.02 0.00 0.00 2.15
546 571 1.430992 ACGGAGACCCCAAAGAAAGA 58.569 50.000 0.00 0.00 34.14 2.52
554 579 2.224892 ACCCCAAAGAAAGAGCTTCTCC 60.225 50.000 0.00 0.00 44.00 3.71
555 580 2.079925 CCCAAAGAAAGAGCTTCTCCG 58.920 52.381 0.00 0.00 44.00 4.63
556 581 2.551071 CCCAAAGAAAGAGCTTCTCCGT 60.551 50.000 0.00 0.00 44.00 4.69
558 583 3.187432 CCAAAGAAAGAGCTTCTCCGTTC 59.813 47.826 0.00 0.00 44.00 3.95
560 585 3.311486 AGAAAGAGCTTCTCCGTTCTG 57.689 47.619 8.64 0.00 40.61 3.02
561 586 2.630580 AGAAAGAGCTTCTCCGTTCTGT 59.369 45.455 8.64 0.00 40.61 3.41
625 761 2.112998 CCAAAGCCAATCCATCCATGT 58.887 47.619 0.00 0.00 0.00 3.21
626 762 2.159014 CCAAAGCCAATCCATCCATGTG 60.159 50.000 0.00 0.00 0.00 3.21
675 823 5.122519 GTCACCCACAAAAACAAATCCATT 58.877 37.500 0.00 0.00 0.00 3.16
676 824 5.007528 GTCACCCACAAAAACAAATCCATTG 59.992 40.000 0.00 0.00 44.95 2.82
677 825 3.882288 ACCCACAAAAACAAATCCATTGC 59.118 39.130 0.00 0.00 43.13 3.56
683 831 6.257411 CACAAAAACAAATCCATTGCAGTACA 59.743 34.615 0.00 0.00 43.13 2.90
765 917 3.677648 CGACGACGAACCCCACCT 61.678 66.667 0.00 0.00 42.66 4.00
910 1098 0.687757 TCATGCCCGTCTAGCTTCCT 60.688 55.000 0.00 0.00 0.00 3.36
1035 1285 0.032515 TGATCGGGCAGACTTCCCTA 60.033 55.000 8.66 0.00 41.69 3.53
1136 1404 4.141287 TCCATGAAAAATCACGAGGTTGT 58.859 39.130 0.00 0.00 0.00 3.32
1284 1552 1.305297 TGCCAACAACCACCACCAA 60.305 52.632 0.00 0.00 0.00 3.67
1467 1735 0.396435 AGTGCACTTCCATCCACGAA 59.604 50.000 15.25 0.00 33.62 3.85
1591 1867 0.544697 ACACCCAACAACTTCCGTCT 59.455 50.000 0.00 0.00 0.00 4.18
1607 1883 2.033550 CCGTCTATCTTCTTCCTCGTGG 59.966 54.545 0.00 0.00 0.00 4.94
1622 1903 1.752501 CGTGGTCATCGATCGCAACC 61.753 60.000 20.01 20.01 0.00 3.77
1641 1926 1.269051 CCAAAGTTTCTTGCCGTCCAC 60.269 52.381 0.00 0.00 0.00 4.02
1642 1927 1.676006 CAAAGTTTCTTGCCGTCCACT 59.324 47.619 0.00 0.00 0.00 4.00
1643 1928 2.875933 CAAAGTTTCTTGCCGTCCACTA 59.124 45.455 0.00 0.00 0.00 2.74
1644 1929 3.418684 AAGTTTCTTGCCGTCCACTAT 57.581 42.857 0.00 0.00 0.00 2.12
1645 1930 4.546829 AAGTTTCTTGCCGTCCACTATA 57.453 40.909 0.00 0.00 0.00 1.31
1646 1931 4.755266 AGTTTCTTGCCGTCCACTATAT 57.245 40.909 0.00 0.00 0.00 0.86
1647 1932 5.864418 AGTTTCTTGCCGTCCACTATATA 57.136 39.130 0.00 0.00 0.00 0.86
1648 1933 6.229936 AGTTTCTTGCCGTCCACTATATAA 57.770 37.500 0.00 0.00 0.00 0.98
1649 1934 6.281405 AGTTTCTTGCCGTCCACTATATAAG 58.719 40.000 0.00 0.00 0.00 1.73
1650 1935 5.864418 TTCTTGCCGTCCACTATATAAGT 57.136 39.130 0.00 0.00 39.81 2.24
1651 1936 5.449107 TCTTGCCGTCCACTATATAAGTC 57.551 43.478 0.00 0.00 35.76 3.01
1652 1937 5.138276 TCTTGCCGTCCACTATATAAGTCT 58.862 41.667 0.00 0.00 35.76 3.24
1653 1938 6.301486 TCTTGCCGTCCACTATATAAGTCTA 58.699 40.000 0.00 0.00 35.76 2.59
1775 2060 2.359967 GGCCTACTTCCGGTGCTCT 61.360 63.158 0.00 0.00 0.00 4.09
1853 2138 1.740296 GCTTGTGGCCACGTACGAT 60.740 57.895 30.07 3.10 34.27 3.73
2116 2405 1.247567 CCTGTTGCTTGACCGGAAAT 58.752 50.000 9.46 0.00 0.00 2.17
2131 2425 2.746142 CGGAAATCTGCCAGCATAGGAA 60.746 50.000 0.00 0.00 0.00 3.36
2148 2442 8.099537 AGCATAGGAAAATATAGTCACATGAGG 58.900 37.037 0.00 0.00 0.00 3.86
2150 2444 9.650539 CATAGGAAAATATAGTCACATGAGGAG 57.349 37.037 0.00 0.00 0.00 3.69
2155 2449 9.383519 GAAAATATAGTCACATGAGGAGAACAA 57.616 33.333 0.00 0.00 0.00 2.83
2158 2452 9.911788 AATATAGTCACATGAGGAGAACAATTT 57.088 29.630 0.00 0.00 0.00 1.82
2160 2454 6.323203 AGTCACATGAGGAGAACAATTTTG 57.677 37.500 0.00 0.00 0.00 2.44
2161 2455 6.064060 AGTCACATGAGGAGAACAATTTTGA 58.936 36.000 0.00 0.00 0.00 2.69
2162 2456 6.206243 AGTCACATGAGGAGAACAATTTTGAG 59.794 38.462 0.00 0.00 0.00 3.02
2163 2457 6.205464 GTCACATGAGGAGAACAATTTTGAGA 59.795 38.462 0.00 0.00 0.00 3.27
2164 2458 6.429078 TCACATGAGGAGAACAATTTTGAGAG 59.571 38.462 0.00 0.00 0.00 3.20
2221 2518 5.319043 TGTATAAATGAATCCTGGACCCC 57.681 43.478 0.00 0.00 0.00 4.95
2229 2526 1.392407 ATCCTGGACCCCCAAATTGA 58.608 50.000 0.00 0.00 42.98 2.57
2238 2535 2.214235 CCCAAATTGAGGCCATGGG 58.786 57.895 15.13 8.92 44.38 4.00
2272 2569 7.406151 TCCTCTAATTTAGGGAAGGAAAGTCAT 59.594 37.037 4.81 0.00 34.66 3.06
2274 2571 8.158025 TCTAATTTAGGGAAGGAAAGTCATGA 57.842 34.615 3.66 0.00 0.00 3.07
2278 2575 6.581388 TTAGGGAAGGAAAGTCATGATGAT 57.419 37.500 0.00 0.00 0.00 2.45
2308 2605 6.818644 TGCTAGCCTAGTGTAAAATGAAGAAG 59.181 38.462 13.29 0.00 0.00 2.85
2313 2610 8.787852 AGCCTAGTGTAAAATGAAGAAGAAAAG 58.212 33.333 0.00 0.00 0.00 2.27
2320 2617 8.856103 TGTAAAATGAAGAAGAAAAGTTAGGGG 58.144 33.333 0.00 0.00 0.00 4.79
2322 2619 4.447138 TGAAGAAGAAAAGTTAGGGGCA 57.553 40.909 0.00 0.00 0.00 5.36
2323 2620 4.142038 TGAAGAAGAAAAGTTAGGGGCAC 58.858 43.478 0.00 0.00 0.00 5.01
2338 2642 1.671845 GGGCACGTTGTTTACTGTTGA 59.328 47.619 0.00 0.00 0.00 3.18
2345 2649 7.480542 GGCACGTTGTTTACTGTTGATATTTAG 59.519 37.037 0.00 0.00 0.00 1.85
2483 2787 6.499106 TTAGCCTTGATCATATGGACTGAA 57.501 37.500 12.36 0.00 0.00 3.02
2485 2789 5.950023 AGCCTTGATCATATGGACTGAAAT 58.050 37.500 12.36 0.00 0.00 2.17
2489 2793 7.446625 GCCTTGATCATATGGACTGAAATAAGT 59.553 37.037 12.36 0.00 0.00 2.24
2500 2809 5.744819 GGACTGAAATAAGTCGTAGCTTCTC 59.255 44.000 0.00 0.00 46.31 2.87
2502 2811 6.557110 ACTGAAATAAGTCGTAGCTTCTCTC 58.443 40.000 0.00 0.00 0.00 3.20
2508 2817 3.681593 AGTCGTAGCTTCTCTCACTTCT 58.318 45.455 0.00 0.00 0.00 2.85
2509 2818 4.076394 AGTCGTAGCTTCTCTCACTTCTT 58.924 43.478 0.00 0.00 0.00 2.52
2521 2830 7.953158 TCTCTCACTTCTTTTCTGTATGTTG 57.047 36.000 0.00 0.00 0.00 3.33
2525 2834 5.997746 TCACTTCTTTTCTGTATGTTGGAGG 59.002 40.000 0.00 0.00 0.00 4.30
2526 2835 5.997746 CACTTCTTTTCTGTATGTTGGAGGA 59.002 40.000 0.00 0.00 0.00 3.71
2528 2837 6.881602 ACTTCTTTTCTGTATGTTGGAGGATC 59.118 38.462 0.00 0.00 0.00 3.36
2543 2852 3.699134 GATCCAGTTCCGGGGCCAC 62.699 68.421 4.39 0.00 0.00 5.01
2573 2882 3.050275 GGAGCCCACACGTTCTGC 61.050 66.667 0.00 0.00 0.00 4.26
2580 2889 1.499056 CACACGTTCTGCATGGCTC 59.501 57.895 0.00 0.00 0.00 4.70
2585 2894 0.671472 CGTTCTGCATGGCTCTGTCA 60.671 55.000 0.00 0.00 0.00 3.58
2624 2934 1.209019 CCACTAGCACCTCTCTGCAAT 59.791 52.381 0.00 0.00 39.86 3.56
2644 2954 5.948162 GCAATATATGATGTTGGATGACCCT 59.052 40.000 0.00 0.00 32.72 4.34
2651 2961 4.881273 TGATGTTGGATGACCCTAAAATCG 59.119 41.667 0.00 0.00 35.38 3.34
2652 2962 4.561500 TGTTGGATGACCCTAAAATCGA 57.438 40.909 0.00 0.00 35.38 3.59
2653 2963 5.110814 TGTTGGATGACCCTAAAATCGAT 57.889 39.130 0.00 0.00 35.38 3.59
2699 3009 3.756963 CTCAACATCTATGCATCATGGGG 59.243 47.826 18.32 11.80 0.00 4.96
2702 3012 4.458256 ACATCTATGCATCATGGGGAAA 57.542 40.909 18.32 0.00 0.00 3.13
2703 3013 4.404640 ACATCTATGCATCATGGGGAAAG 58.595 43.478 18.32 2.94 0.00 2.62
2716 3026 2.112190 GGGGAAAGATCTCTTCTCCGT 58.888 52.381 16.11 0.00 34.61 4.69
2720 3030 0.457851 AAGATCTCTTCTCCGTGGCG 59.542 55.000 0.00 0.00 31.78 5.69
2736 3046 1.002773 TGGCGGAAGGGAGAAAACTAC 59.997 52.381 0.00 0.00 0.00 2.73
2738 3048 1.002773 GCGGAAGGGAGAAAACTACCA 59.997 52.381 0.00 0.00 0.00 3.25
2739 3049 2.551504 GCGGAAGGGAGAAAACTACCAA 60.552 50.000 0.00 0.00 0.00 3.67
2756 3066 6.314917 ACTACCAATTCTCAAAGGGTTGATT 58.685 36.000 0.00 0.00 42.85 2.57
2760 3070 5.928264 CCAATTCTCAAAGGGTTGATTTCAC 59.072 40.000 0.00 0.00 42.85 3.18
2772 3082 2.524306 TGATTTCACCGGAATTTGCCT 58.476 42.857 9.46 0.00 31.93 4.75
2774 3084 4.277476 TGATTTCACCGGAATTTGCCTAT 58.723 39.130 9.46 0.00 31.93 2.57
2785 3095 4.750598 GGAATTTGCCTATAGACGAAGGAC 59.249 45.833 0.00 0.00 34.58 3.85
2786 3096 5.453480 GGAATTTGCCTATAGACGAAGGACT 60.453 44.000 0.00 0.00 34.58 3.85
2821 3131 1.197721 GTTCTCAACACCAAGGCATCG 59.802 52.381 0.00 0.00 0.00 3.84
2824 3134 0.888736 TCAACACCAAGGCATCGTGG 60.889 55.000 3.93 0.00 46.01 4.94
2825 3135 1.603455 AACACCAAGGCATCGTGGG 60.603 57.895 3.93 0.00 45.06 4.61
2826 3136 2.751436 CACCAAGGCATCGTGGGG 60.751 66.667 3.68 0.00 45.06 4.96
2834 3144 0.815615 GGCATCGTGGGGAACATCTC 60.816 60.000 0.00 0.00 0.00 2.75
2870 3180 7.534085 TCACTATTATTTCCATCGACAACAC 57.466 36.000 0.00 0.00 0.00 3.32
2876 3186 2.754946 TCCATCGACAACACTTACCC 57.245 50.000 0.00 0.00 0.00 3.69
2877 3187 1.276989 TCCATCGACAACACTTACCCC 59.723 52.381 0.00 0.00 0.00 4.95
2894 3204 0.961358 CCCGCCCCGTTTATGAACAA 60.961 55.000 0.95 0.00 35.44 2.83
2897 3207 2.525055 CGCCCCGTTTATGAACAATTG 58.475 47.619 3.24 3.24 35.44 2.32
2926 3236 5.602978 AGATCGGTTATGGTTATCACTTCCT 59.397 40.000 0.00 0.00 0.00 3.36
2940 3250 9.391006 GTTATCACTTCCTGGTGTTAATTGATA 57.609 33.333 0.00 0.00 35.35 2.15
3062 3372 7.575414 TGTATGTAAAACACCATGTTCTTGT 57.425 32.000 0.00 0.00 40.14 3.16
3108 3418 5.192176 TGCTACTCATGTGAAATGGCATAA 58.808 37.500 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.625818 GGAGCCGATGGGAATCTATGT 59.374 52.381 0.00 0.00 34.06 2.29
7 8 2.334006 AGGAGCCGATGGGAATCTAT 57.666 50.000 0.00 0.00 34.06 1.98
16 17 3.142393 CCACCCTAGGAGCCGATG 58.858 66.667 11.48 0.00 0.00 3.84
23 24 1.580059 CTAACCTTGCCACCCTAGGA 58.420 55.000 11.48 0.00 38.56 2.94
24 25 0.546598 CCTAACCTTGCCACCCTAGG 59.453 60.000 0.06 0.06 41.55 3.02
32 33 0.392595 CCGAGAACCCTAACCTTGCC 60.393 60.000 0.00 0.00 0.00 4.52
53 54 2.529680 CGCTAAATTTCGTCGACGTGTC 60.530 50.000 34.40 15.85 40.80 3.67
56 57 1.645751 GACGCTAAATTTCGTCGACGT 59.354 47.619 34.40 19.32 44.18 4.34
64 65 9.856803 GATCTAAAGAATCTGACGCTAAATTTC 57.143 33.333 0.00 0.00 0.00 2.17
71 72 4.902443 TCGATCTAAAGAATCTGACGCT 57.098 40.909 0.00 0.00 0.00 5.07
73 74 7.096271 CCTTGAATCGATCTAAAGAATCTGACG 60.096 40.741 13.42 0.00 0.00 4.35
76 77 6.989169 ACCCTTGAATCGATCTAAAGAATCTG 59.011 38.462 13.42 1.06 0.00 2.90
79 80 7.338710 TGAACCCTTGAATCGATCTAAAGAAT 58.661 34.615 13.42 2.41 0.00 2.40
99 100 1.129811 CGTTATCCTTGCCGTTGAACC 59.870 52.381 0.00 0.00 0.00 3.62
100 101 2.070783 TCGTTATCCTTGCCGTTGAAC 58.929 47.619 0.00 0.00 0.00 3.18
107 108 1.473434 CCTGGAGTCGTTATCCTTGCC 60.473 57.143 0.00 0.00 37.74 4.52
108 109 1.473434 CCCTGGAGTCGTTATCCTTGC 60.473 57.143 0.00 0.00 37.74 4.01
110 111 0.831307 GCCCTGGAGTCGTTATCCTT 59.169 55.000 0.00 0.00 37.74 3.36
130 131 0.252197 ACGTGCCCCTAAGGACAATC 59.748 55.000 0.00 0.00 38.24 2.67
131 132 0.035439 CACGTGCCCCTAAGGACAAT 60.035 55.000 0.82 0.00 38.24 2.71
132 133 1.373435 CACGTGCCCCTAAGGACAA 59.627 57.895 0.82 0.00 38.24 3.18
133 134 3.065306 CACGTGCCCCTAAGGACA 58.935 61.111 0.82 0.00 38.24 4.02
134 135 2.436115 GCACGTGCCCCTAAGGAC 60.436 66.667 30.12 0.00 38.24 3.85
136 137 2.114670 CATGCACGTGCCCCTAAGG 61.115 63.158 35.72 16.27 41.18 2.69
137 138 1.078497 TCATGCACGTGCCCCTAAG 60.078 57.895 35.72 18.89 41.18 2.18
139 140 2.267642 GTCATGCACGTGCCCCTA 59.732 61.111 35.72 19.27 41.18 3.53
154 159 5.158101 TCGATGACATCTAGAAAGTCGTC 57.842 43.478 26.01 26.01 42.19 4.20
156 161 6.799441 CCTTATCGATGACATCTAGAAAGTCG 59.201 42.308 18.34 13.69 35.09 4.18
162 167 6.773200 ACTTGACCTTATCGATGACATCTAGA 59.227 38.462 8.54 4.84 0.00 2.43
165 170 5.506483 CGACTTGACCTTATCGATGACATCT 60.506 44.000 8.54 0.00 36.70 2.90
176 181 0.460311 CGGAGCCGACTTGACCTTAT 59.540 55.000 2.00 0.00 42.83 1.73
177 182 1.601419 CCGGAGCCGACTTGACCTTA 61.601 60.000 11.05 0.00 42.83 2.69
182 187 1.672854 CCATACCGGAGCCGACTTGA 61.673 60.000 9.46 0.00 42.83 3.02
189 194 0.182775 ACATTTCCCATACCGGAGCC 59.817 55.000 9.46 0.00 36.56 4.70
191 196 2.093181 TGTCACATTTCCCATACCGGAG 60.093 50.000 9.46 0.00 36.56 4.63
192 197 1.909986 TGTCACATTTCCCATACCGGA 59.090 47.619 9.46 0.00 36.56 5.14
195 200 2.422127 CCGTTGTCACATTTCCCATACC 59.578 50.000 0.00 0.00 0.00 2.73
204 209 1.503818 GGACACGCCGTTGTCACATT 61.504 55.000 17.22 0.00 46.68 2.71
205 210 1.959226 GGACACGCCGTTGTCACAT 60.959 57.895 17.22 0.00 46.68 3.21
234 239 3.399105 TAGCCATTGCCGCCGTCAT 62.399 57.895 0.00 0.00 38.69 3.06
246 251 0.537188 CTGGACCAACGAGTAGCCAT 59.463 55.000 0.00 0.00 0.00 4.40
252 257 1.645710 AGATTCCTGGACCAACGAGT 58.354 50.000 0.00 0.00 0.00 4.18
258 263 5.715439 ATTACATCAAGATTCCTGGACCA 57.285 39.130 0.00 0.00 0.00 4.02
312 317 7.222161 ACCCGGATCTATTATAAAGGTCAAAC 58.778 38.462 0.73 0.00 0.00 2.93
315 320 6.320518 AGACCCGGATCTATTATAAAGGTCA 58.679 40.000 0.00 0.00 42.95 4.02
316 321 6.854091 AGACCCGGATCTATTATAAAGGTC 57.146 41.667 0.00 0.00 41.25 3.85
318 323 8.919777 AAAAAGACCCGGATCTATTATAAAGG 57.080 34.615 0.00 0.00 0.00 3.11
456 467 3.432890 GGCACCCCAACAAAGAAAATTCA 60.433 43.478 0.00 0.00 0.00 2.57
457 468 3.138304 GGCACCCCAACAAAGAAAATTC 58.862 45.455 0.00 0.00 0.00 2.17
546 571 0.832135 TGGGACAGAACGGAGAAGCT 60.832 55.000 0.00 0.00 0.00 3.74
554 579 2.032071 GTGGGGTGGGACAGAACG 59.968 66.667 0.00 0.00 41.80 3.95
555 580 1.375326 GAGTGGGGTGGGACAGAAC 59.625 63.158 0.00 0.00 41.80 3.01
556 581 2.214216 CGAGTGGGGTGGGACAGAA 61.214 63.158 0.00 0.00 41.80 3.02
558 583 2.603473 TCGAGTGGGGTGGGACAG 60.603 66.667 0.00 0.00 41.80 3.51
560 585 0.901580 TTAGTCGAGTGGGGTGGGAC 60.902 60.000 2.10 0.00 0.00 4.46
561 586 0.042131 ATTAGTCGAGTGGGGTGGGA 59.958 55.000 2.10 0.00 0.00 4.37
625 761 1.417517 CATGAGGGAATCGGTGGATCA 59.582 52.381 0.00 0.00 30.81 2.92
626 762 1.879796 GCATGAGGGAATCGGTGGATC 60.880 57.143 0.00 0.00 30.81 3.36
675 823 2.703416 CTGGCAAGAAGATGTACTGCA 58.297 47.619 3.78 0.00 0.00 4.41
676 824 1.399791 GCTGGCAAGAAGATGTACTGC 59.600 52.381 0.00 0.00 0.00 4.40
677 825 2.983229 AGCTGGCAAGAAGATGTACTG 58.017 47.619 0.00 0.00 0.00 2.74
683 831 2.875094 AGTGAAGCTGGCAAGAAGAT 57.125 45.000 0.00 0.00 0.00 2.40
765 917 0.826715 CGGAGGAGGAAGCATCTTGA 59.173 55.000 0.00 0.00 0.00 3.02
826 993 2.223803 ATATAGAGTGGAGGCGGAGG 57.776 55.000 0.00 0.00 0.00 4.30
827 994 4.950475 TCAATATATAGAGTGGAGGCGGAG 59.050 45.833 0.00 0.00 0.00 4.63
828 995 4.930696 TCAATATATAGAGTGGAGGCGGA 58.069 43.478 0.00 0.00 0.00 5.54
829 996 5.127845 ACATCAATATATAGAGTGGAGGCGG 59.872 44.000 0.00 0.00 0.00 6.13
830 997 6.214191 ACATCAATATATAGAGTGGAGGCG 57.786 41.667 0.00 0.00 0.00 5.52
831 998 6.578023 GGACATCAATATATAGAGTGGAGGC 58.422 44.000 0.00 0.00 0.00 4.70
837 1011 4.673441 GCGCGGACATCAATATATAGAGT 58.327 43.478 8.83 0.00 0.00 3.24
910 1098 4.262079 GGAAGAAGTCGAAGAAGAAGACCA 60.262 45.833 0.00 0.00 39.69 4.02
1035 1285 1.004440 GACGTTGAGGCTGAGGCTT 60.004 57.895 10.75 0.00 38.98 4.35
1068 1336 2.283966 CTGGTCACGGGAGGAGGT 60.284 66.667 0.00 0.00 0.00 3.85
1069 1337 3.077556 CCTGGTCACGGGAGGAGG 61.078 72.222 0.00 0.00 46.80 4.30
1077 1345 2.989824 ACGAGGTCCCTGGTCACG 60.990 66.667 0.00 0.00 28.93 4.35
1118 1386 2.034053 GCCACAACCTCGTGATTTTTCA 59.966 45.455 0.00 0.00 39.34 2.69
1261 1529 2.904866 GTGGTTGTTGGCAGCGGA 60.905 61.111 0.00 0.00 0.00 5.54
1266 1534 0.689080 ATTGGTGGTGGTTGTTGGCA 60.689 50.000 0.00 0.00 0.00 4.92
1502 1770 4.335647 AGACACGGCTGGCCTTGG 62.336 66.667 19.58 7.54 39.36 3.61
1515 1783 1.174783 GGACGTAGAGCTTGGAGACA 58.825 55.000 0.00 0.00 39.83 3.41
1591 1867 3.315470 CGATGACCACGAGGAAGAAGATA 59.685 47.826 5.68 0.00 38.69 1.98
1607 1883 1.732259 ACTTTGGTTGCGATCGATGAC 59.268 47.619 21.57 12.93 0.00 3.06
1622 1903 1.676006 AGTGGACGGCAAGAAACTTTG 59.324 47.619 0.00 0.00 0.00 2.77
1646 1931 9.542462 AGCGCAAATTGATTAGTTATAGACTTA 57.458 29.630 11.47 0.00 39.86 2.24
1647 1932 8.438676 AGCGCAAATTGATTAGTTATAGACTT 57.561 30.769 11.47 0.00 39.86 3.01
1648 1933 8.338259 CAAGCGCAAATTGATTAGTTATAGACT 58.662 33.333 11.47 0.00 42.55 3.24
1649 1934 7.587757 CCAAGCGCAAATTGATTAGTTATAGAC 59.412 37.037 11.47 0.00 0.00 2.59
1650 1935 7.282224 ACCAAGCGCAAATTGATTAGTTATAGA 59.718 33.333 11.47 0.00 0.00 1.98
1651 1936 7.417612 ACCAAGCGCAAATTGATTAGTTATAG 58.582 34.615 11.47 0.00 0.00 1.31
1652 1937 7.328277 ACCAAGCGCAAATTGATTAGTTATA 57.672 32.000 11.47 0.00 0.00 0.98
1653 1938 6.207691 ACCAAGCGCAAATTGATTAGTTAT 57.792 33.333 11.47 0.00 0.00 1.89
1956 2241 3.800863 CTTCCGCTGCAGCTGCTG 61.801 66.667 36.61 35.16 42.66 4.41
1963 2248 2.359107 CTTCCTGCTTCCGCTGCA 60.359 61.111 0.00 0.00 38.81 4.41
2116 2405 6.043127 TGACTATATTTTCCTATGCTGGCAGA 59.957 38.462 20.86 3.68 0.00 4.26
2131 2425 9.911788 AATTGTTCTCCTCATGTGACTATATTT 57.088 29.630 0.00 0.00 0.00 1.40
2148 2442 8.190784 TCTGTTTTTCCTCTCAAAATTGTTCTC 58.809 33.333 0.00 0.00 0.00 2.87
2150 2444 8.702163 TTCTGTTTTTCCTCTCAAAATTGTTC 57.298 30.769 0.00 0.00 0.00 3.18
2158 2452 9.408648 AGTATTTTCTTCTGTTTTTCCTCTCAA 57.591 29.630 0.00 0.00 0.00 3.02
2161 2455 9.847224 TGTAGTATTTTCTTCTGTTTTTCCTCT 57.153 29.630 0.00 0.00 0.00 3.69
2203 2500 2.579100 TGGGGGTCCAGGATTCATTTA 58.421 47.619 0.00 0.00 38.32 1.40
2204 2501 1.392407 TGGGGGTCCAGGATTCATTT 58.608 50.000 0.00 0.00 38.32 2.32
2215 2512 1.685765 GGCCTCAATTTGGGGGTCC 60.686 63.158 17.06 6.81 38.85 4.46
2221 2518 1.207811 GTTCCCATGGCCTCAATTTGG 59.792 52.381 6.09 1.39 0.00 3.28
2229 2526 1.649271 GGATCTGGTTCCCATGGCCT 61.649 60.000 6.09 0.00 30.82 5.19
2272 2569 4.764308 CACTAGGCTAGCACTCTATCATCA 59.236 45.833 21.26 0.00 0.00 3.07
2274 2571 4.735369 ACACTAGGCTAGCACTCTATCAT 58.265 43.478 21.26 0.00 0.00 2.45
2278 2575 6.605995 TCATTTTACACTAGGCTAGCACTCTA 59.394 38.462 21.26 7.99 0.00 2.43
2308 2605 1.951602 ACAACGTGCCCCTAACTTTTC 59.048 47.619 0.00 0.00 0.00 2.29
2313 2610 2.224784 CAGTAAACAACGTGCCCCTAAC 59.775 50.000 0.00 0.00 0.00 2.34
2320 2617 8.013378 ACTAAATATCAACAGTAAACAACGTGC 58.987 33.333 0.00 0.00 0.00 5.34
2322 2619 9.048446 ACACTAAATATCAACAGTAAACAACGT 57.952 29.630 0.00 0.00 0.00 3.99
2456 2760 7.446319 TCAGTCCATATGATCAAGGCTAAAATG 59.554 37.037 3.65 0.00 0.00 2.32
2457 2761 7.520798 TCAGTCCATATGATCAAGGCTAAAAT 58.479 34.615 3.65 0.00 0.00 1.82
2483 2787 6.376018 AGAAGTGAGAGAAGCTACGACTTATT 59.624 38.462 0.00 0.00 0.00 1.40
2485 2789 5.247084 AGAAGTGAGAGAAGCTACGACTTA 58.753 41.667 0.00 0.00 0.00 2.24
2489 2793 5.241949 AGAAAAGAAGTGAGAGAAGCTACGA 59.758 40.000 0.00 0.00 0.00 3.43
2500 2809 6.148480 CCTCCAACATACAGAAAAGAAGTGAG 59.852 42.308 0.00 0.00 0.00 3.51
2502 2811 5.997746 TCCTCCAACATACAGAAAAGAAGTG 59.002 40.000 0.00 0.00 0.00 3.16
2508 2817 5.512942 TGGATCCTCCAACATACAGAAAA 57.487 39.130 14.23 0.00 45.00 2.29
2521 2830 2.444256 CCCCGGAACTGGATCCTCC 61.444 68.421 14.23 10.85 37.34 4.30
2525 2834 3.407967 TGGCCCCGGAACTGGATC 61.408 66.667 0.73 0.00 33.16 3.36
2526 2835 3.728373 GTGGCCCCGGAACTGGAT 61.728 66.667 0.73 0.00 33.16 3.41
2543 2852 2.436646 GCTCCACACATCACCCCG 60.437 66.667 0.00 0.00 0.00 5.73
2568 2877 1.003928 ACATGACAGAGCCATGCAGAA 59.996 47.619 0.00 0.00 43.76 3.02
2573 2882 0.750546 CCCCACATGACAGAGCCATG 60.751 60.000 0.00 0.00 45.03 3.66
2580 2889 1.153188 TATGCGCCCCACATGACAG 60.153 57.895 4.18 0.00 0.00 3.51
2585 2894 2.111878 GCTCTATGCGCCCCACAT 59.888 61.111 4.18 0.00 0.00 3.21
2624 2934 9.739276 GATTTTAGGGTCATCCAACATCATATA 57.261 33.333 0.00 0.00 38.24 0.86
2671 2981 5.847304 TGATGCATAGATGTTGAGGACTAC 58.153 41.667 0.00 0.00 0.00 2.73
2676 2986 3.756963 CCCATGATGCATAGATGTTGAGG 59.243 47.826 0.00 0.00 0.00 3.86
2685 2995 4.919793 AGATCTTTCCCCATGATGCATAG 58.080 43.478 0.00 0.00 0.00 2.23
2686 2996 4.600547 AGAGATCTTTCCCCATGATGCATA 59.399 41.667 0.00 0.00 0.00 3.14
2687 2997 3.398292 AGAGATCTTTCCCCATGATGCAT 59.602 43.478 0.00 0.00 0.00 3.96
2688 2998 2.781757 AGAGATCTTTCCCCATGATGCA 59.218 45.455 0.00 0.00 0.00 3.96
2699 3009 2.545731 GCCACGGAGAAGAGATCTTTC 58.454 52.381 0.00 3.26 38.96 2.62
2702 3012 2.111162 CGCCACGGAGAAGAGATCT 58.889 57.895 0.00 0.00 42.61 2.75
2703 3013 4.719997 CGCCACGGAGAAGAGATC 57.280 61.111 0.00 0.00 0.00 2.75
2716 3026 1.002773 GTAGTTTTCTCCCTTCCGCCA 59.997 52.381 0.00 0.00 0.00 5.69
2720 3030 5.571285 AGAATTGGTAGTTTTCTCCCTTCC 58.429 41.667 0.00 0.00 0.00 3.46
2736 3046 5.928264 GTGAAATCAACCCTTTGAGAATTGG 59.072 40.000 0.00 0.00 45.07 3.16
2738 3048 5.278957 CGGTGAAATCAACCCTTTGAGAATT 60.279 40.000 0.00 0.00 45.07 2.17
2739 3049 4.218417 CGGTGAAATCAACCCTTTGAGAAT 59.782 41.667 0.00 0.00 45.07 2.40
2756 3066 4.448210 GTCTATAGGCAAATTCCGGTGAA 58.552 43.478 0.00 0.00 34.33 3.18
2760 3070 3.380479 TCGTCTATAGGCAAATTCCGG 57.620 47.619 4.99 0.00 0.00 5.14
2791 3101 1.061131 GTGTTGAGAACGATGATGGCG 59.939 52.381 0.00 0.00 0.00 5.69
2821 3131 3.041946 AGTAGATGGAGATGTTCCCCAC 58.958 50.000 0.00 0.00 46.19 4.61
2824 3134 5.070981 TGATGAAGTAGATGGAGATGTTCCC 59.929 44.000 0.00 0.00 46.19 3.97
2825 3135 5.988561 GTGATGAAGTAGATGGAGATGTTCC 59.011 44.000 0.00 0.00 46.98 3.62
2826 3136 6.815089 AGTGATGAAGTAGATGGAGATGTTC 58.185 40.000 0.00 0.00 0.00 3.18
2870 3180 0.816421 CATAAACGGGGCGGGGTAAG 60.816 60.000 0.00 0.00 0.00 2.34
2876 3186 1.099689 ATTGTTCATAAACGGGGCGG 58.900 50.000 0.00 0.00 38.28 6.13
2877 3187 2.525055 CAATTGTTCATAAACGGGGCG 58.475 47.619 0.00 0.00 38.28 6.13
2894 3204 8.758829 TGATAACCATAACCGATCTATAGCAAT 58.241 33.333 0.00 0.00 0.00 3.56
2897 3207 7.773149 AGTGATAACCATAACCGATCTATAGC 58.227 38.462 0.00 0.00 0.00 2.97
2957 3267 7.595819 ACAAAGGATTCACCAATAACAAAGA 57.404 32.000 0.00 0.00 42.04 2.52
3042 3352 4.950475 TCCACAAGAACATGGTGTTTTACA 59.050 37.500 0.00 0.00 41.28 2.41
3062 3372 2.173356 CAATAGGCTTCTCCCACATCCA 59.827 50.000 0.00 0.00 34.51 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.