Multiple sequence alignment - TraesCS7B01G417600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G417600 chr7B 100.000 2372 0 0 1 2372 685377607 685379978 0.000000e+00 4381.0
1 TraesCS7B01G417600 chr7B 91.383 441 37 1 1337 1777 684615678 684615239 1.090000e-168 603.0
2 TraesCS7B01G417600 chr7B 91.781 365 29 1 1413 1777 684643516 684643153 8.780000e-140 507.0
3 TraesCS7B01G417600 chr7B 92.395 263 19 1 1033 1295 684616015 684615754 9.290000e-100 374.0
4 TraesCS7B01G417600 chr7B 90.244 164 15 1 186 349 641811030 641810868 2.140000e-51 213.0
5 TraesCS7B01G417600 chr7B 94.000 100 5 1 1780 1879 684596122 684596024 1.700000e-32 150.0
6 TraesCS7B01G417600 chr7B 100.000 60 0 0 2689 2748 685380295 685380354 8.040000e-21 111.0
7 TraesCS7B01G417600 chr7A 94.713 662 31 1 1337 1994 696251854 696252515 0.000000e+00 1026.0
8 TraesCS7B01G417600 chr7A 94.539 586 30 2 1337 1920 696200237 696199652 0.000000e+00 904.0
9 TraesCS7B01G417600 chr7A 92.593 378 20 4 968 1339 696251427 696251802 1.120000e-148 536.0
10 TraesCS7B01G417600 chr7A 81.654 665 58 30 691 1337 696200909 696200291 6.840000e-136 494.0
11 TraesCS7B01G417600 chr7A 97.297 37 1 0 606 642 696250967 696251003 2.280000e-06 63.9
12 TraesCS7B01G417600 chr7D 94.600 537 28 1 1338 1874 603499695 603499160 0.000000e+00 830.0
13 TraesCS7B01G417600 chr7D 94.103 390 15 5 949 1337 603500131 603499749 1.100000e-163 586.0
14 TraesCS7B01G417600 chr7D 93.750 336 21 0 1340 1675 603646474 603646809 3.160000e-139 505.0
15 TraesCS7B01G417600 chr7D 87.324 426 52 2 1875 2299 603647287 603647711 1.140000e-133 486.0
16 TraesCS7B01G417600 chr7D 86.085 424 54 5 1875 2296 603498838 603498418 4.170000e-123 451.0
17 TraesCS7B01G417600 chr7D 89.275 345 15 8 968 1295 603605387 603605726 1.970000e-111 412.0
18 TraesCS7B01G417600 chr7D 95.349 258 8 3 390 645 603502788 603502533 9.160000e-110 407.0
19 TraesCS7B01G417600 chr7D 90.446 314 12 5 645 950 603500477 603500174 5.510000e-107 398.0
20 TraesCS7B01G417600 chr7D 87.417 151 14 2 1724 1874 603646801 603646946 4.710000e-38 169.0
21 TraesCS7B01G417600 chrUn 91.781 365 29 1 1413 1777 202523674 202523311 8.780000e-140 507.0
22 TraesCS7B01G417600 chrUn 91.507 365 30 1 1413 1777 197868959 197868596 4.090000e-138 501.0
23 TraesCS7B01G417600 chrUn 91.507 365 30 1 1413 1777 224016654 224016291 4.090000e-138 501.0
24 TraesCS7B01G417600 chrUn 87.755 441 33 4 1337 1777 399485768 399486187 1.900000e-136 496.0
25 TraesCS7B01G417600 chrUn 92.776 263 18 1 1033 1295 202524067 202523806 2.000000e-101 379.0
26 TraesCS7B01G417600 chrUn 93.385 257 16 1 1033 1289 399485431 399485686 2.000000e-101 379.0
27 TraesCS7B01G417600 chrUn 92.015 263 20 1 1033 1295 197869352 197869091 4.320000e-98 368.0
28 TraesCS7B01G417600 chrUn 91.635 263 21 1 1033 1295 224017047 224016786 2.010000e-96 363.0
29 TraesCS7B01G417600 chr3D 93.514 185 8 4 1 182 240276877 240277060 3.490000e-69 272.0
30 TraesCS7B01G417600 chr3D 87.432 183 19 4 185 364 548265751 548265932 9.970000e-50 207.0
31 TraesCS7B01G417600 chr3D 89.024 164 17 1 186 349 594084390 594084552 4.640000e-48 202.0
32 TraesCS7B01G417600 chr3D 95.876 97 3 1 390 486 599166223 599166128 3.660000e-34 156.0
33 TraesCS7B01G417600 chr3D 92.079 101 7 1 390 489 28857259 28857359 1.030000e-29 141.0
34 TraesCS7B01G417600 chr2B 92.147 191 6 7 1 182 194206000 194206190 7.550000e-66 261.0
35 TraesCS7B01G417600 chr2B 92.391 184 11 3 1 182 385347086 385346904 2.710000e-65 259.0
36 TraesCS7B01G417600 chr2B 92.021 188 9 5 1 182 539409420 539409607 2.710000e-65 259.0
37 TraesCS7B01G417600 chr2B 91.053 190 12 5 1 185 523480288 523480099 4.540000e-63 252.0
38 TraesCS7B01G417600 chr2B 94.681 94 5 0 387 480 800132895 800132988 2.210000e-31 147.0
39 TraesCS7B01G417600 chr4B 92.063 189 7 4 1 182 562804488 562804675 2.710000e-65 259.0
40 TraesCS7B01G417600 chr4B 92.021 188 8 4 1 182 204915921 204915735 9.760000e-65 257.0
41 TraesCS7B01G417600 chr4B 91.209 91 8 0 391 481 404777569 404777479 1.030000e-24 124.0
42 TraesCS7B01G417600 chr5B 91.444 187 11 4 1 182 570631461 570631647 4.540000e-63 252.0
43 TraesCS7B01G417600 chr3B 91.803 183 12 2 1 182 551427213 551427393 4.540000e-63 252.0
44 TraesCS7B01G417600 chr3B 87.363 182 20 3 185 364 811411714 811411894 3.590000e-49 206.0
45 TraesCS7B01G417600 chr5D 92.216 167 11 2 186 351 481697102 481697267 4.580000e-58 235.0
46 TraesCS7B01G417600 chr5D 89.831 177 15 3 186 360 407109746 407109571 9.900000e-55 224.0
47 TraesCS7B01G417600 chr5D 89.024 164 17 1 186 349 543118660 543118498 4.640000e-48 202.0
48 TraesCS7B01G417600 chr5D 94.565 92 5 0 397 488 46056148 46056057 2.850000e-30 143.0
49 TraesCS7B01G417600 chr4A 92.683 164 11 1 186 349 701348000 701347838 4.580000e-58 235.0
50 TraesCS7B01G417600 chr3A 88.485 165 18 1 186 350 670664967 670665130 6.000000e-47 198.0
51 TraesCS7B01G417600 chr1D 96.842 95 3 0 387 481 416845130 416845224 2.830000e-35 159.0
52 TraesCS7B01G417600 chr1D 94.118 85 5 0 397 481 328875668 328875584 2.220000e-26 130.0
53 TraesCS7B01G417600 chr5A 94.949 99 5 0 390 488 37066705 37066607 3.660000e-34 156.0
54 TraesCS7B01G417600 chr1A 96.739 92 3 0 390 481 514139052 514139143 1.320000e-33 154.0
55 TraesCS7B01G417600 chr1A 91.176 102 8 1 387 488 557927841 557927941 1.330000e-28 137.0
56 TraesCS7B01G417600 chr1A 92.391 92 5 2 397 488 425710757 425710668 2.220000e-26 130.0
57 TraesCS7B01G417600 chr4D 95.652 92 4 0 390 481 310115656 310115565 6.130000e-32 148.0
58 TraesCS7B01G417600 chr1B 92.632 95 6 1 390 484 42091687 42091594 4.770000e-28 135.0
59 TraesCS7B01G417600 chr6A 93.750 80 3 2 395 473 578702948 578702870 4.810000e-23 119.0
60 TraesCS7B01G417600 chr6D 90.909 88 3 3 390 473 432673061 432672975 2.240000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G417600 chr7B 685377607 685380354 2747 False 2246.000000 4381 100.000000 1 2748 2 chr7B.!!$F1 2747
1 TraesCS7B01G417600 chr7B 684615239 684616015 776 True 488.500000 603 91.889000 1033 1777 2 chr7B.!!$R4 744
2 TraesCS7B01G417600 chr7A 696199652 696200909 1257 True 699.000000 904 88.096500 691 1920 2 chr7A.!!$R1 1229
3 TraesCS7B01G417600 chr7A 696250967 696252515 1548 False 541.966667 1026 94.867667 606 1994 3 chr7A.!!$F1 1388
4 TraesCS7B01G417600 chr7D 603498418 603502788 4370 True 534.400000 830 92.116600 390 2296 5 chr7D.!!$R1 1906
5 TraesCS7B01G417600 chr7D 603646474 603647711 1237 False 386.666667 505 89.497000 1340 2299 3 chr7D.!!$F2 959
6 TraesCS7B01G417600 chrUn 202523311 202524067 756 True 443.000000 507 92.278500 1033 1777 2 chrUn.!!$R2 744
7 TraesCS7B01G417600 chrUn 399485431 399486187 756 False 437.500000 496 90.570000 1033 1777 2 chrUn.!!$F1 744
8 TraesCS7B01G417600 chrUn 197868596 197869352 756 True 434.500000 501 91.761000 1033 1777 2 chrUn.!!$R1 744
9 TraesCS7B01G417600 chrUn 224016291 224017047 756 True 432.000000 501 91.571000 1033 1777 2 chrUn.!!$R3 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.036306 GTAGGTGGGCCCGGAATATG 59.964 60.0 19.37 0.0 38.74 1.78 F
356 357 0.037790 GTCGGCATAGATGAGGAGGC 60.038 60.0 0.00 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1666 3886 0.318445 GGTTCGTCTGCGTGTACACT 60.318 55.0 23.01 0.0 39.49 3.55 R
1983 4562 0.472471 TGGTTTGAGAGGAACGGCTT 59.528 50.0 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.837093 TTGGACTCCGTTTGATATTCCT 57.163 40.909 0.00 0.00 0.00 3.36
23 24 4.837093 TGGACTCCGTTTGATATTCCTT 57.163 40.909 0.00 0.00 0.00 3.36
24 25 5.174037 TGGACTCCGTTTGATATTCCTTT 57.826 39.130 0.00 0.00 0.00 3.11
25 26 5.566469 TGGACTCCGTTTGATATTCCTTTT 58.434 37.500 0.00 0.00 0.00 2.27
26 27 5.646360 TGGACTCCGTTTGATATTCCTTTTC 59.354 40.000 0.00 0.00 0.00 2.29
27 28 5.066117 GGACTCCGTTTGATATTCCTTTTCC 59.934 44.000 0.00 0.00 0.00 3.13
28 29 4.634443 ACTCCGTTTGATATTCCTTTTCCG 59.366 41.667 0.00 0.00 0.00 4.30
29 30 3.375922 TCCGTTTGATATTCCTTTTCCGC 59.624 43.478 0.00 0.00 0.00 5.54
30 31 3.350912 CGTTTGATATTCCTTTTCCGCG 58.649 45.455 0.00 0.00 0.00 6.46
31 32 3.062909 CGTTTGATATTCCTTTTCCGCGA 59.937 43.478 8.23 0.00 0.00 5.87
32 33 4.436317 CGTTTGATATTCCTTTTCCGCGAA 60.436 41.667 8.23 0.00 0.00 4.70
33 34 5.395642 GTTTGATATTCCTTTTCCGCGAAA 58.604 37.500 8.23 3.35 0.00 3.46
34 35 4.609691 TGATATTCCTTTTCCGCGAAAC 57.390 40.909 8.23 0.00 30.83 2.78
35 36 4.004314 TGATATTCCTTTTCCGCGAAACA 58.996 39.130 8.23 0.00 30.83 2.83
36 37 2.699251 ATTCCTTTTCCGCGAAACAC 57.301 45.000 8.23 0.00 30.83 3.32
37 38 1.670791 TTCCTTTTCCGCGAAACACT 58.329 45.000 8.23 0.00 30.83 3.55
38 39 2.529780 TCCTTTTCCGCGAAACACTA 57.470 45.000 8.23 0.00 30.83 2.74
39 40 2.836262 TCCTTTTCCGCGAAACACTAA 58.164 42.857 8.23 0.00 30.83 2.24
40 41 3.204526 TCCTTTTCCGCGAAACACTAAA 58.795 40.909 8.23 0.00 30.83 1.85
41 42 3.626670 TCCTTTTCCGCGAAACACTAAAA 59.373 39.130 8.23 1.96 30.83 1.52
42 43 4.276431 TCCTTTTCCGCGAAACACTAAAAT 59.724 37.500 8.23 0.00 30.83 1.82
43 44 5.469421 TCCTTTTCCGCGAAACACTAAAATA 59.531 36.000 8.23 0.00 30.83 1.40
44 45 5.793457 CCTTTTCCGCGAAACACTAAAATAG 59.207 40.000 8.23 0.00 30.83 1.73
45 46 4.932268 TTCCGCGAAACACTAAAATAGG 57.068 40.909 8.23 0.00 0.00 2.57
46 47 4.191033 TCCGCGAAACACTAAAATAGGA 57.809 40.909 8.23 0.00 0.00 2.94
47 48 4.567971 TCCGCGAAACACTAAAATAGGAA 58.432 39.130 8.23 0.00 0.00 3.36
48 49 4.996122 TCCGCGAAACACTAAAATAGGAAA 59.004 37.500 8.23 0.00 0.00 3.13
49 50 5.469421 TCCGCGAAACACTAAAATAGGAAAA 59.531 36.000 8.23 0.00 0.00 2.29
50 51 6.017275 TCCGCGAAACACTAAAATAGGAAAAA 60.017 34.615 8.23 0.00 0.00 1.94
70 71 4.985845 CAACAATTCGGGTTGGGC 57.014 55.556 0.00 0.00 41.41 5.36
71 72 1.291906 CAACAATTCGGGTTGGGCC 59.708 57.895 0.00 0.00 41.41 5.80
72 73 1.155155 AACAATTCGGGTTGGGCCT 59.845 52.632 4.53 0.00 37.43 5.19
73 74 0.898326 AACAATTCGGGTTGGGCCTC 60.898 55.000 4.53 0.00 37.43 4.70
74 75 2.052104 CAATTCGGGTTGGGCCTCC 61.052 63.158 4.53 7.48 37.43 4.30
75 76 3.638592 AATTCGGGTTGGGCCTCCG 62.639 63.158 21.43 21.43 44.59 4.63
79 80 3.332385 GGGTTGGGCCTCCGGTTA 61.332 66.667 4.53 0.00 37.43 2.85
80 81 2.271173 GGTTGGGCCTCCGGTTAG 59.729 66.667 4.53 0.00 35.24 2.34
81 82 2.599757 GGTTGGGCCTCCGGTTAGT 61.600 63.158 4.53 0.00 35.24 2.24
82 83 1.266867 GGTTGGGCCTCCGGTTAGTA 61.267 60.000 4.53 0.00 35.24 1.82
83 84 0.177373 GTTGGGCCTCCGGTTAGTAG 59.823 60.000 4.53 0.00 35.24 2.57
84 85 0.979187 TTGGGCCTCCGGTTAGTAGG 60.979 60.000 4.53 0.51 35.24 3.18
85 86 1.382283 GGGCCTCCGGTTAGTAGGT 60.382 63.158 0.84 0.00 32.67 3.08
86 87 0.979709 GGGCCTCCGGTTAGTAGGTT 60.980 60.000 0.84 0.00 32.67 3.50
87 88 1.689258 GGGCCTCCGGTTAGTAGGTTA 60.689 57.143 0.84 0.00 32.67 2.85
88 89 1.685517 GGCCTCCGGTTAGTAGGTTAG 59.314 57.143 0.00 0.00 32.67 2.34
89 90 1.068281 GCCTCCGGTTAGTAGGTTAGC 59.932 57.143 0.00 0.00 32.67 3.09
90 91 1.685517 CCTCCGGTTAGTAGGTTAGCC 59.314 57.143 0.00 0.00 0.00 3.93
91 92 1.685517 CTCCGGTTAGTAGGTTAGCCC 59.314 57.143 0.00 0.00 34.57 5.19
92 93 1.006998 TCCGGTTAGTAGGTTAGCCCA 59.993 52.381 0.00 0.00 34.66 5.36
93 94 2.044758 CCGGTTAGTAGGTTAGCCCAT 58.955 52.381 0.00 0.00 34.66 4.00
94 95 3.117169 TCCGGTTAGTAGGTTAGCCCATA 60.117 47.826 0.00 0.00 34.66 2.74
95 96 3.642848 CCGGTTAGTAGGTTAGCCCATAA 59.357 47.826 0.00 0.00 34.66 1.90
96 97 4.101430 CCGGTTAGTAGGTTAGCCCATAAA 59.899 45.833 0.00 0.00 34.66 1.40
97 98 5.396660 CCGGTTAGTAGGTTAGCCCATAAAA 60.397 44.000 0.00 0.00 34.66 1.52
98 99 5.756833 CGGTTAGTAGGTTAGCCCATAAAAG 59.243 44.000 0.00 0.00 34.66 2.27
99 100 6.631088 CGGTTAGTAGGTTAGCCCATAAAAGT 60.631 42.308 0.00 0.00 34.66 2.66
100 101 6.541278 GGTTAGTAGGTTAGCCCATAAAAGTG 59.459 42.308 0.00 0.00 34.66 3.16
101 102 5.774102 AGTAGGTTAGCCCATAAAAGTGT 57.226 39.130 0.00 0.00 34.66 3.55
102 103 6.879367 AGTAGGTTAGCCCATAAAAGTGTA 57.121 37.500 0.00 0.00 34.66 2.90
103 104 7.261688 AGTAGGTTAGCCCATAAAAGTGTAA 57.738 36.000 0.00 0.00 34.66 2.41
104 105 7.692172 AGTAGGTTAGCCCATAAAAGTGTAAA 58.308 34.615 0.00 0.00 34.66 2.01
105 106 7.827729 AGTAGGTTAGCCCATAAAAGTGTAAAG 59.172 37.037 0.00 0.00 34.66 1.85
106 107 6.549242 AGGTTAGCCCATAAAAGTGTAAAGT 58.451 36.000 0.00 0.00 34.66 2.66
107 108 7.692172 AGGTTAGCCCATAAAAGTGTAAAGTA 58.308 34.615 0.00 0.00 34.66 2.24
108 109 8.165397 AGGTTAGCCCATAAAAGTGTAAAGTAA 58.835 33.333 0.00 0.00 34.66 2.24
109 110 8.795513 GGTTAGCCCATAAAAGTGTAAAGTAAA 58.204 33.333 0.00 0.00 0.00 2.01
110 111 9.836076 GTTAGCCCATAAAAGTGTAAAGTAAAG 57.164 33.333 0.00 0.00 0.00 1.85
111 112 6.920817 AGCCCATAAAAGTGTAAAGTAAAGC 58.079 36.000 0.00 0.00 0.00 3.51
112 113 6.719829 AGCCCATAAAAGTGTAAAGTAAAGCT 59.280 34.615 0.00 0.00 0.00 3.74
113 114 7.027760 GCCCATAAAAGTGTAAAGTAAAGCTC 58.972 38.462 0.00 0.00 0.00 4.09
114 115 7.308951 GCCCATAAAAGTGTAAAGTAAAGCTCA 60.309 37.037 0.00 0.00 0.00 4.26
115 116 8.739972 CCCATAAAAGTGTAAAGTAAAGCTCAT 58.260 33.333 0.00 0.00 0.00 2.90
123 124 8.947115 AGTGTAAAGTAAAGCTCATAAACATCC 58.053 33.333 0.00 0.00 0.00 3.51
124 125 8.726988 GTGTAAAGTAAAGCTCATAAACATCCA 58.273 33.333 0.00 0.00 0.00 3.41
125 126 9.290988 TGTAAAGTAAAGCTCATAAACATCCAA 57.709 29.630 0.00 0.00 0.00 3.53
128 129 9.476202 AAAGTAAAGCTCATAAACATCCAAAAC 57.524 29.630 0.00 0.00 0.00 2.43
129 130 8.177119 AGTAAAGCTCATAAACATCCAAAACA 57.823 30.769 0.00 0.00 0.00 2.83
130 131 8.299570 AGTAAAGCTCATAAACATCCAAAACAG 58.700 33.333 0.00 0.00 0.00 3.16
131 132 5.649782 AGCTCATAAACATCCAAAACAGG 57.350 39.130 0.00 0.00 0.00 4.00
132 133 5.079643 AGCTCATAAACATCCAAAACAGGT 58.920 37.500 0.00 0.00 0.00 4.00
133 134 6.245408 AGCTCATAAACATCCAAAACAGGTA 58.755 36.000 0.00 0.00 0.00 3.08
134 135 6.719370 AGCTCATAAACATCCAAAACAGGTAA 59.281 34.615 0.00 0.00 0.00 2.85
135 136 7.397192 AGCTCATAAACATCCAAAACAGGTAAT 59.603 33.333 0.00 0.00 0.00 1.89
136 137 8.682710 GCTCATAAACATCCAAAACAGGTAATA 58.317 33.333 0.00 0.00 0.00 0.98
144 145 9.860650 ACATCCAAAACAGGTAATATAATAGCA 57.139 29.630 0.17 0.00 0.00 3.49
147 148 9.295825 TCCAAAACAGGTAATATAATAGCATGG 57.704 33.333 0.00 0.00 0.00 3.66
148 149 9.295825 CCAAAACAGGTAATATAATAGCATGGA 57.704 33.333 0.00 0.00 0.00 3.41
191 192 3.606777 CGTGGAGACGTATTAATATGCCG 59.393 47.826 13.56 8.20 40.91 5.69
192 193 4.614306 CGTGGAGACGTATTAATATGCCGA 60.614 45.833 13.56 0.33 40.91 5.54
193 194 4.620184 GTGGAGACGTATTAATATGCCGAC 59.380 45.833 13.56 6.50 0.00 4.79
194 195 3.850273 GGAGACGTATTAATATGCCGACG 59.150 47.826 13.56 9.17 36.42 5.12
195 196 3.829948 AGACGTATTAATATGCCGACGG 58.170 45.455 10.29 10.29 34.72 4.79
218 219 4.362476 GTTACCACCCGTCGGCGT 62.362 66.667 9.28 2.35 36.15 5.68
219 220 2.674727 TTACCACCCGTCGGCGTA 60.675 61.111 9.28 2.89 36.15 4.42
220 221 2.699768 TTACCACCCGTCGGCGTAG 61.700 63.158 9.28 1.04 36.15 3.51
221 222 3.918253 TACCACCCGTCGGCGTAGT 62.918 63.158 9.28 1.83 36.15 2.73
222 223 4.060038 CCACCCGTCGGCGTAGTT 62.060 66.667 9.28 0.00 36.15 2.24
223 224 2.048877 CACCCGTCGGCGTAGTTT 60.049 61.111 9.28 0.00 36.15 2.66
224 225 2.090524 CACCCGTCGGCGTAGTTTC 61.091 63.158 9.28 0.00 36.15 2.78
225 226 2.877582 CCCGTCGGCGTAGTTTCG 60.878 66.667 9.28 3.83 36.15 3.46
226 227 2.176546 CCGTCGGCGTAGTTTCGA 59.823 61.111 9.28 0.00 36.15 3.71
227 228 2.148365 CCGTCGGCGTAGTTTCGAC 61.148 63.158 9.28 0.00 46.52 4.20
231 232 3.356640 GGCGTAGTTTCGACGTCG 58.643 61.111 31.30 31.30 42.31 5.12
232 233 1.441016 GGCGTAGTTTCGACGTCGT 60.441 57.895 34.40 19.70 42.31 4.34
233 234 1.391396 GGCGTAGTTTCGACGTCGTC 61.391 60.000 34.40 24.65 42.31 4.20
234 235 0.722469 GCGTAGTTTCGACGTCGTCA 60.722 55.000 34.40 21.16 42.31 4.35
235 236 1.662360 CGTAGTTTCGACGTCGTCAA 58.338 50.000 34.40 25.17 40.80 3.18
236 237 1.636135 CGTAGTTTCGACGTCGTCAAG 59.364 52.381 34.40 17.60 40.80 3.02
237 238 1.381429 GTAGTTTCGACGTCGTCAAGC 59.619 52.381 34.40 24.05 40.80 4.01
238 239 1.125266 GTTTCGACGTCGTCAAGCG 59.875 57.895 34.40 11.05 40.80 4.68
239 240 2.012414 TTTCGACGTCGTCAAGCGG 61.012 57.895 34.40 7.16 41.72 5.52
240 241 2.666715 TTTCGACGTCGTCAAGCGGT 62.667 55.000 34.40 0.00 41.72 5.68
241 242 3.164011 CGACGTCGTCAAGCGGTC 61.164 66.667 29.08 0.00 41.72 4.79
242 243 3.164011 GACGTCGTCAAGCGGTCG 61.164 66.667 20.28 0.00 41.72 4.79
243 244 3.868951 GACGTCGTCAAGCGGTCGT 62.869 63.158 20.28 0.00 46.47 4.34
244 245 3.164011 CGTCGTCAAGCGGTCGTC 61.164 66.667 0.00 0.00 41.72 4.20
245 246 3.164011 GTCGTCAAGCGGTCGTCG 61.164 66.667 0.00 0.00 41.72 5.12
254 255 4.778415 CGGTCGTCGCTGACTGGG 62.778 72.222 7.56 0.00 40.77 4.45
255 256 3.681835 GGTCGTCGCTGACTGGGT 61.682 66.667 6.79 0.00 38.91 4.51
256 257 2.338015 GGTCGTCGCTGACTGGGTA 61.338 63.158 6.79 0.00 38.91 3.69
257 258 1.136984 GTCGTCGCTGACTGGGTAG 59.863 63.158 7.03 0.00 35.95 3.18
258 259 2.044555 TCGTCGCTGACTGGGTAGG 61.045 63.158 7.03 0.00 0.00 3.18
259 260 2.341101 CGTCGCTGACTGGGTAGGT 61.341 63.158 7.03 0.00 0.00 3.08
260 261 1.215647 GTCGCTGACTGGGTAGGTG 59.784 63.158 2.10 0.00 0.00 4.00
261 262 1.982395 TCGCTGACTGGGTAGGTGG 60.982 63.158 0.00 0.00 0.00 4.61
262 263 2.990479 GCTGACTGGGTAGGTGGG 59.010 66.667 0.00 0.00 0.00 4.61
263 264 2.990479 CTGACTGGGTAGGTGGGC 59.010 66.667 0.00 0.00 0.00 5.36
264 265 2.609610 TGACTGGGTAGGTGGGCC 60.610 66.667 0.00 0.00 0.00 5.80
265 266 3.408853 GACTGGGTAGGTGGGCCC 61.409 72.222 17.59 17.59 45.04 5.80
270 271 3.094498 GGTAGGTGGGCCCGGAAT 61.094 66.667 19.37 5.48 38.74 3.01
271 272 1.767268 GGTAGGTGGGCCCGGAATA 60.767 63.158 19.37 4.35 38.74 1.75
272 273 1.131928 GGTAGGTGGGCCCGGAATAT 61.132 60.000 19.37 1.82 38.74 1.28
273 274 0.036306 GTAGGTGGGCCCGGAATATG 59.964 60.000 19.37 0.00 38.74 1.78
274 275 1.774894 TAGGTGGGCCCGGAATATGC 61.775 60.000 19.37 0.00 38.74 3.14
275 276 2.597510 GTGGGCCCGGAATATGCC 60.598 66.667 19.37 6.57 44.59 4.40
308 309 4.977126 CGTATCTCGCGCGGTCCC 62.977 72.222 31.69 13.23 0.00 4.46
309 310 4.977126 GTATCTCGCGCGGTCCCG 62.977 72.222 31.69 13.29 43.09 5.14
320 321 4.222847 GGTCCCGACGGCCTCATC 62.223 72.222 8.86 0.00 0.00 2.92
321 322 3.148279 GTCCCGACGGCCTCATCT 61.148 66.667 8.86 0.00 0.00 2.90
322 323 1.826921 GTCCCGACGGCCTCATCTA 60.827 63.158 8.86 0.00 0.00 1.98
323 324 1.153061 TCCCGACGGCCTCATCTAT 59.847 57.895 8.86 0.00 0.00 1.98
324 325 1.179174 TCCCGACGGCCTCATCTATG 61.179 60.000 8.86 0.00 0.00 2.23
325 326 1.373497 CCGACGGCCTCATCTATGC 60.373 63.158 0.00 0.00 0.00 3.14
326 327 1.373497 CGACGGCCTCATCTATGCC 60.373 63.158 0.00 0.00 41.85 4.40
329 330 4.683432 GGCCTCATCTATGCCGAC 57.317 61.111 0.00 0.00 35.08 4.79
330 331 1.373497 GGCCTCATCTATGCCGACG 60.373 63.158 0.00 0.00 35.08 5.12
331 332 1.373497 GCCTCATCTATGCCGACGG 60.373 63.158 10.29 10.29 0.00 4.79
349 350 2.343758 CCCCCGTCGGCATAGATG 59.656 66.667 5.50 0.00 0.00 2.90
350 351 2.207229 CCCCCGTCGGCATAGATGA 61.207 63.158 5.50 0.00 0.00 2.92
351 352 1.290324 CCCCGTCGGCATAGATGAG 59.710 63.158 5.50 0.00 0.00 2.90
352 353 1.290324 CCCGTCGGCATAGATGAGG 59.710 63.158 5.50 0.00 0.00 3.86
353 354 1.179174 CCCGTCGGCATAGATGAGGA 61.179 60.000 5.50 0.00 0.00 3.71
354 355 0.242286 CCGTCGGCATAGATGAGGAG 59.758 60.000 0.00 0.00 0.00 3.69
355 356 0.242286 CGTCGGCATAGATGAGGAGG 59.758 60.000 0.00 0.00 0.00 4.30
356 357 0.037790 GTCGGCATAGATGAGGAGGC 60.038 60.000 0.00 0.00 0.00 4.70
357 358 1.188219 TCGGCATAGATGAGGAGGCC 61.188 60.000 0.00 0.00 38.04 5.19
358 359 1.294780 GGCATAGATGAGGAGGCCG 59.705 63.158 0.00 0.00 0.00 6.13
359 360 1.188219 GGCATAGATGAGGAGGCCGA 61.188 60.000 0.00 0.00 0.00 5.54
360 361 0.901124 GCATAGATGAGGAGGCCGAT 59.099 55.000 0.00 0.00 0.00 4.18
361 362 1.405256 GCATAGATGAGGAGGCCGATG 60.405 57.143 0.00 0.00 0.00 3.84
362 363 1.206610 CATAGATGAGGAGGCCGATGG 59.793 57.143 0.00 0.00 0.00 3.51
372 373 2.908015 GCCGATGGCCTAAGTGGA 59.092 61.111 3.32 0.00 44.06 4.02
373 374 1.451936 GCCGATGGCCTAAGTGGAT 59.548 57.895 3.32 0.00 44.06 3.41
374 375 0.685097 GCCGATGGCCTAAGTGGATA 59.315 55.000 3.32 0.00 44.06 2.59
375 376 1.279271 GCCGATGGCCTAAGTGGATAT 59.721 52.381 3.32 0.00 44.06 1.63
376 377 2.290323 GCCGATGGCCTAAGTGGATATT 60.290 50.000 3.32 0.00 44.06 1.28
377 378 3.600388 CCGATGGCCTAAGTGGATATTC 58.400 50.000 3.32 0.00 38.35 1.75
378 379 3.261897 CCGATGGCCTAAGTGGATATTCT 59.738 47.826 3.32 0.00 38.35 2.40
379 380 4.248859 CGATGGCCTAAGTGGATATTCTG 58.751 47.826 3.32 0.00 38.35 3.02
380 381 4.583871 GATGGCCTAAGTGGATATTCTGG 58.416 47.826 3.32 0.00 38.35 3.86
381 382 3.393687 TGGCCTAAGTGGATATTCTGGT 58.606 45.455 3.32 0.00 38.35 4.00
382 383 4.562767 TGGCCTAAGTGGATATTCTGGTA 58.437 43.478 3.32 0.00 38.35 3.25
383 384 4.593206 TGGCCTAAGTGGATATTCTGGTAG 59.407 45.833 3.32 0.00 38.35 3.18
384 385 4.593634 GGCCTAAGTGGATATTCTGGTAGT 59.406 45.833 0.00 0.00 38.35 2.73
385 386 5.511545 GGCCTAAGTGGATATTCTGGTAGTG 60.512 48.000 0.00 0.00 38.35 2.74
386 387 5.070580 GCCTAAGTGGATATTCTGGTAGTGT 59.929 44.000 0.00 0.00 38.35 3.55
387 388 6.739008 GCCTAAGTGGATATTCTGGTAGTGTC 60.739 46.154 0.00 0.00 38.35 3.67
388 389 4.920640 AGTGGATATTCTGGTAGTGTCG 57.079 45.455 0.00 0.00 0.00 4.35
407 408 6.587990 AGTGTCGAGTGACTCTATTTTTCATG 59.412 38.462 11.26 0.00 44.73 3.07
412 413 7.544566 TCGAGTGACTCTATTTTTCATGTAACC 59.455 37.037 11.26 0.00 0.00 2.85
465 466 9.129209 TCTCGATTATACTTGATCAATAAAGCG 57.871 33.333 8.96 14.16 0.00 4.68
476 477 5.348724 TGATCAATAAAGCGCGATATTCCTC 59.651 40.000 12.10 14.23 0.00 3.71
481 482 3.675467 AAGCGCGATATTCCTCAAAAC 57.325 42.857 12.10 0.00 0.00 2.43
482 483 2.627945 AGCGCGATATTCCTCAAAACA 58.372 42.857 12.10 0.00 0.00 2.83
484 485 3.063997 AGCGCGATATTCCTCAAAACAAG 59.936 43.478 12.10 0.00 0.00 3.16
487 488 5.022021 CGCGATATTCCTCAAAACAAGAAC 58.978 41.667 0.00 0.00 0.00 3.01
597 598 5.280654 TCGTTTACCAGGTCAAACTAACT 57.719 39.130 16.36 0.00 33.43 2.24
648 2705 7.373180 GCACAACACAAATCACACATATATACG 59.627 37.037 0.00 0.00 0.00 3.06
653 2710 7.223971 ACACAAATCACACATATATACGTGACC 59.776 37.037 15.45 0.00 40.91 4.02
661 2718 5.014858 ACATATATACGTGACCCACCCTAG 58.985 45.833 0.00 0.00 0.00 3.02
664 2721 2.307496 TACGTGACCCACCCTAGAAA 57.693 50.000 0.00 0.00 0.00 2.52
711 2768 4.461781 AGAACAAGAAAAGATGGCTGATGG 59.538 41.667 0.00 0.00 0.00 3.51
717 2774 2.154567 AAGATGGCTGATGGTGCATT 57.845 45.000 0.00 0.00 0.00 3.56
742 2799 6.759356 TGATACCGACATGAAACGAAATACAT 59.241 34.615 0.00 0.00 0.00 2.29
744 2801 6.340537 ACCGACATGAAACGAAATACATAC 57.659 37.500 0.00 0.00 0.00 2.39
746 2803 6.035650 ACCGACATGAAACGAAATACATACAG 59.964 38.462 0.00 0.00 0.00 2.74
747 2804 6.254804 CCGACATGAAACGAAATACATACAGA 59.745 38.462 0.00 0.00 0.00 3.41
748 2805 7.201487 CCGACATGAAACGAAATACATACAGAA 60.201 37.037 0.00 0.00 0.00 3.02
749 2806 8.166066 CGACATGAAACGAAATACATACAGAAA 58.834 33.333 0.00 0.00 0.00 2.52
750 2807 9.478019 GACATGAAACGAAATACATACAGAAAG 57.522 33.333 0.00 0.00 0.00 2.62
919 3025 6.214412 CAGGCTATTTACTCCAGGGAATATCT 59.786 42.308 0.00 0.00 0.00 1.98
1004 3161 1.149174 CCGGTCCCTTGATCATGGG 59.851 63.158 31.96 31.96 44.74 4.00
1062 3219 3.274455 CTCGACGCTGTGGCACTCT 62.274 63.158 19.83 0.00 38.60 3.24
1298 3455 4.439449 CGTAAGTCGCATCAATCTCTTCTC 59.561 45.833 0.00 0.00 0.00 2.87
1328 3488 2.821969 CCAAACCTTCCTCTCACAATGG 59.178 50.000 0.00 0.00 0.00 3.16
1385 3605 4.329545 TGTGGCAGTTCGAGGGGC 62.330 66.667 0.00 0.00 0.00 5.80
1510 3730 1.611043 GGCTCGTGTACTACAACGAC 58.389 55.000 2.35 1.34 31.87 4.34
1582 3802 2.338984 GTCCACGACGTCCAAGCT 59.661 61.111 10.58 0.00 0.00 3.74
1645 3865 3.227276 CCAGGCTACGGCGGAGAT 61.227 66.667 26.08 7.50 39.81 2.75
1666 3886 4.675976 TTTCCACTACTTCAAGTTCGGA 57.324 40.909 0.00 0.00 0.00 4.55
1778 3999 6.409524 AAGAAATCAACCTGCAAGATTTCA 57.590 33.333 27.27 0.13 34.07 2.69
1830 4052 5.549742 TTGATTGGCAAGTGGAAGAAAAT 57.450 34.783 5.96 0.00 31.55 1.82
2000 4579 3.660865 TCTAAAGCCGTTCCTCTCAAAC 58.339 45.455 0.00 0.00 0.00 2.93
2011 4590 5.560953 CGTTCCTCTCAAACCATTCTCAAAC 60.561 44.000 0.00 0.00 0.00 2.93
2014 4593 4.319766 CCTCTCAAACCATTCTCAAACGTG 60.320 45.833 0.00 0.00 0.00 4.49
2034 4613 2.103042 GCAGATGTGTCCGGTCAGC 61.103 63.158 0.19 2.99 0.00 4.26
2040 4619 3.060000 TGTCCGGTCAGCGATCGT 61.060 61.111 17.81 0.26 33.97 3.73
2083 4662 4.662961 CGTGAGCTGGTGTGGCGA 62.663 66.667 0.00 0.00 34.52 5.54
2094 4673 4.373116 GTGGCGACCGCTCCTTCA 62.373 66.667 14.25 0.41 41.60 3.02
2095 4674 3.621805 TGGCGACCGCTCCTTCAA 61.622 61.111 14.25 0.00 41.60 2.69
2142 4721 2.685017 TCCTGCTGGATCTGGCGT 60.685 61.111 8.48 0.00 37.46 5.68
2147 4726 3.842923 CTGGATCTGGCGTCGGCT 61.843 66.667 20.29 0.00 39.81 5.52
2179 4758 4.039092 GAGGGCTGAGGCTGGCAA 62.039 66.667 5.84 0.00 38.73 4.52
2216 4795 2.509336 CTGTCGTGGATCGGTGGC 60.509 66.667 0.00 0.00 40.32 5.01
2223 4803 1.987306 TGGATCGGTGGCAGTGCTA 60.987 57.895 16.11 5.94 0.00 3.49
2224 4804 1.521681 GGATCGGTGGCAGTGCTAC 60.522 63.158 22.33 22.33 39.31 3.58
2249 4829 3.640407 GCTGAGGTGGTGGAGGCA 61.640 66.667 0.00 0.00 0.00 4.75
2250 4830 2.976490 GCTGAGGTGGTGGAGGCAT 61.976 63.158 0.00 0.00 0.00 4.40
2285 4865 3.330720 CGGTTGGGCCTTCCTCCT 61.331 66.667 4.53 0.00 36.20 3.69
2299 4879 1.072331 TCCTCCTGGCTTCTGAACAAC 59.928 52.381 0.00 0.00 0.00 3.32
2300 4880 1.151668 CTCCTGGCTTCTGAACAACG 58.848 55.000 0.00 0.00 0.00 4.10
2301 4881 0.250295 TCCTGGCTTCTGAACAACGG 60.250 55.000 0.00 0.00 0.00 4.44
2302 4882 1.576421 CTGGCTTCTGAACAACGGC 59.424 57.895 0.00 0.00 0.00 5.68
2303 4883 2.175184 CTGGCTTCTGAACAACGGCG 62.175 60.000 4.80 4.80 0.00 6.46
2304 4884 2.251642 GGCTTCTGAACAACGGCGT 61.252 57.895 6.77 6.77 0.00 5.68
2305 4885 1.082756 GCTTCTGAACAACGGCGTG 60.083 57.895 15.70 10.75 0.00 5.34
2306 4886 1.569493 CTTCTGAACAACGGCGTGG 59.431 57.895 15.70 14.76 0.00 4.94
2307 4887 1.841663 CTTCTGAACAACGGCGTGGG 61.842 60.000 20.07 14.61 0.00 4.61
2308 4888 2.280524 CTGAACAACGGCGTGGGA 60.281 61.111 20.07 0.98 0.00 4.37
2309 4889 1.671054 CTGAACAACGGCGTGGGAT 60.671 57.895 20.07 7.06 0.00 3.85
2310 4890 1.228003 TGAACAACGGCGTGGGATT 60.228 52.632 20.07 4.50 0.00 3.01
2311 4891 1.231958 TGAACAACGGCGTGGGATTC 61.232 55.000 20.07 14.37 0.00 2.52
2312 4892 1.918868 GAACAACGGCGTGGGATTCC 61.919 60.000 20.07 0.00 0.00 3.01
2313 4893 3.131478 CAACGGCGTGGGATTCCC 61.131 66.667 15.70 15.40 45.71 3.97
2314 4894 3.327404 AACGGCGTGGGATTCCCT 61.327 61.111 22.38 0.00 45.70 4.20
2315 4895 2.902457 AACGGCGTGGGATTCCCTT 61.902 57.895 22.38 4.61 45.70 3.95
2316 4896 2.824041 CGGCGTGGGATTCCCTTG 60.824 66.667 22.38 15.04 45.70 3.61
2317 4897 2.440247 GGCGTGGGATTCCCTTGG 60.440 66.667 22.38 12.16 45.70 3.61
2318 4898 2.440247 GCGTGGGATTCCCTTGGG 60.440 66.667 22.38 9.84 45.70 4.12
2319 4899 2.440247 CGTGGGATTCCCTTGGGC 60.440 66.667 22.38 6.95 45.70 5.36
2320 4900 2.042944 GTGGGATTCCCTTGGGCC 60.043 66.667 22.38 0.00 45.70 5.80
2321 4901 3.355344 TGGGATTCCCTTGGGCCC 61.355 66.667 22.38 17.59 45.70 5.80
2322 4902 3.355344 GGGATTCCCTTGGGCCCA 61.355 66.667 24.45 24.45 41.34 5.36
2323 4903 2.715125 GGGATTCCCTTGGGCCCAT 61.715 63.158 29.23 9.81 41.34 4.00
2324 4904 1.152461 GGATTCCCTTGGGCCCATC 60.152 63.158 29.23 19.24 0.00 3.51
2325 4905 1.152461 GATTCCCTTGGGCCCATCC 60.152 63.158 29.23 6.04 0.00 3.51
2326 4906 1.626826 ATTCCCTTGGGCCCATCCT 60.627 57.895 29.23 4.50 34.39 3.24
2327 4907 1.231042 ATTCCCTTGGGCCCATCCTT 61.231 55.000 29.23 5.93 34.39 3.36
2328 4908 2.042639 CCCTTGGGCCCATCCTTG 60.043 66.667 29.23 13.38 34.39 3.61
2329 4909 2.042639 CCTTGGGCCCATCCTTGG 60.043 66.667 29.23 18.48 43.23 3.61
2335 4915 4.189580 GCCCATCCTTGGCGGCTA 62.190 66.667 11.43 0.46 42.15 3.93
2336 4916 2.839098 CCCATCCTTGGCGGCTAT 59.161 61.111 11.43 0.00 42.15 2.97
2337 4917 1.302832 CCCATCCTTGGCGGCTATC 60.303 63.158 11.43 0.00 42.15 2.08
2338 4918 1.757306 CCATCCTTGGCGGCTATCT 59.243 57.895 11.43 0.00 35.85 1.98
2339 4919 0.976641 CCATCCTTGGCGGCTATCTA 59.023 55.000 11.43 0.00 35.85 1.98
2340 4920 1.338200 CCATCCTTGGCGGCTATCTAC 60.338 57.143 11.43 0.00 35.85 2.59
2341 4921 0.977395 ATCCTTGGCGGCTATCTACC 59.023 55.000 11.43 0.00 0.00 3.18
2342 4922 1.119574 TCCTTGGCGGCTATCTACCC 61.120 60.000 11.43 0.00 0.00 3.69
2343 4923 1.371558 CTTGGCGGCTATCTACCCC 59.628 63.158 11.43 0.00 0.00 4.95
2344 4924 2.113243 CTTGGCGGCTATCTACCCCC 62.113 65.000 11.43 0.00 0.00 5.40
2345 4925 2.203803 GGCGGCTATCTACCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
2346 4926 2.284276 GGCGGCTATCTACCCCCTC 61.284 68.421 0.00 0.00 0.00 4.30
2347 4927 1.228925 GCGGCTATCTACCCCCTCT 60.229 63.158 0.00 0.00 0.00 3.69
2348 4928 0.832559 GCGGCTATCTACCCCCTCTT 60.833 60.000 0.00 0.00 0.00 2.85
2349 4929 1.258676 CGGCTATCTACCCCCTCTTC 58.741 60.000 0.00 0.00 0.00 2.87
2350 4930 1.258676 GGCTATCTACCCCCTCTTCG 58.741 60.000 0.00 0.00 0.00 3.79
2351 4931 1.258676 GCTATCTACCCCCTCTTCGG 58.741 60.000 0.00 0.00 0.00 4.30
2352 4932 1.258676 CTATCTACCCCCTCTTCGGC 58.741 60.000 0.00 0.00 0.00 5.54
2353 4933 0.559205 TATCTACCCCCTCTTCGGCA 59.441 55.000 0.00 0.00 0.00 5.69
2354 4934 0.760945 ATCTACCCCCTCTTCGGCAG 60.761 60.000 0.00 0.00 0.00 4.85
2355 4935 2.365105 TACCCCCTCTTCGGCAGG 60.365 66.667 0.00 0.00 0.00 4.85
2705 5285 2.526873 CCGGTAGGAGGGATGGGG 60.527 72.222 0.00 0.00 41.02 4.96
2706 5286 3.242291 CGGTAGGAGGGATGGGGC 61.242 72.222 0.00 0.00 0.00 5.80
2707 5287 2.290745 GGTAGGAGGGATGGGGCT 59.709 66.667 0.00 0.00 0.00 5.19
2708 5288 1.843832 GGTAGGAGGGATGGGGCTC 60.844 68.421 0.00 0.00 0.00 4.70
2709 5289 1.843832 GTAGGAGGGATGGGGCTCC 60.844 68.421 0.00 0.00 36.30 4.70
2718 5298 3.948719 TGGGGCTCCAACGTGGTC 61.949 66.667 0.25 0.00 40.73 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.174037 AGGAATATCAAACGGAGTCCAAA 57.826 39.130 10.49 0.00 45.00 3.28
1 2 4.837093 AGGAATATCAAACGGAGTCCAA 57.163 40.909 10.49 0.00 45.00 3.53
2 3 4.837093 AAGGAATATCAAACGGAGTCCA 57.163 40.909 10.49 0.00 45.00 4.02
3 4 5.066117 GGAAAAGGAATATCAAACGGAGTCC 59.934 44.000 0.00 0.00 45.00 3.85
4 5 5.220605 CGGAAAAGGAATATCAAACGGAGTC 60.221 44.000 0.00 0.00 45.00 3.36
6 7 4.495844 GCGGAAAAGGAATATCAAACGGAG 60.496 45.833 0.00 0.00 0.00 4.63
7 8 3.375922 GCGGAAAAGGAATATCAAACGGA 59.624 43.478 0.00 0.00 0.00 4.69
8 9 3.691498 GCGGAAAAGGAATATCAAACGG 58.309 45.455 0.00 0.00 0.00 4.44
9 10 3.062909 TCGCGGAAAAGGAATATCAAACG 59.937 43.478 6.13 0.00 0.00 3.60
10 11 4.609691 TCGCGGAAAAGGAATATCAAAC 57.390 40.909 6.13 0.00 0.00 2.93
11 12 5.048643 TGTTTCGCGGAAAAGGAATATCAAA 60.049 36.000 0.00 0.00 33.14 2.69
12 13 4.456222 TGTTTCGCGGAAAAGGAATATCAA 59.544 37.500 0.00 0.00 33.14 2.57
13 14 4.004314 TGTTTCGCGGAAAAGGAATATCA 58.996 39.130 0.00 0.00 33.14 2.15
14 15 4.094442 AGTGTTTCGCGGAAAAGGAATATC 59.906 41.667 0.00 0.00 33.14 1.63
15 16 4.007659 AGTGTTTCGCGGAAAAGGAATAT 58.992 39.130 0.00 0.00 33.14 1.28
16 17 3.404899 AGTGTTTCGCGGAAAAGGAATA 58.595 40.909 0.00 0.00 33.14 1.75
17 18 2.227194 AGTGTTTCGCGGAAAAGGAAT 58.773 42.857 0.00 0.00 33.14 3.01
18 19 1.670791 AGTGTTTCGCGGAAAAGGAA 58.329 45.000 0.00 0.00 33.14 3.36
19 20 2.529780 TAGTGTTTCGCGGAAAAGGA 57.470 45.000 0.00 0.00 33.14 3.36
20 21 3.612472 TTTAGTGTTTCGCGGAAAAGG 57.388 42.857 0.00 0.00 33.14 3.11
21 22 5.793457 CCTATTTTAGTGTTTCGCGGAAAAG 59.207 40.000 0.00 0.00 33.14 2.27
22 23 5.469421 TCCTATTTTAGTGTTTCGCGGAAAA 59.531 36.000 0.00 0.00 33.14 2.29
23 24 4.996122 TCCTATTTTAGTGTTTCGCGGAAA 59.004 37.500 0.00 0.00 0.00 3.13
24 25 4.567971 TCCTATTTTAGTGTTTCGCGGAA 58.432 39.130 6.13 0.00 0.00 4.30
25 26 4.191033 TCCTATTTTAGTGTTTCGCGGA 57.809 40.909 6.13 0.00 0.00 5.54
26 27 4.932268 TTCCTATTTTAGTGTTTCGCGG 57.068 40.909 6.13 0.00 0.00 6.46
48 49 3.536570 CCCAACCCGAATTGTTGTTTTT 58.463 40.909 6.44 0.00 41.13 1.94
49 50 2.743510 GCCCAACCCGAATTGTTGTTTT 60.744 45.455 6.44 0.00 41.13 2.43
50 51 1.202592 GCCCAACCCGAATTGTTGTTT 60.203 47.619 6.44 0.00 41.13 2.83
51 52 0.391228 GCCCAACCCGAATTGTTGTT 59.609 50.000 6.44 0.00 41.13 2.83
52 53 1.468506 GGCCCAACCCGAATTGTTGT 61.469 55.000 0.00 0.00 41.13 3.32
53 54 1.184970 AGGCCCAACCCGAATTGTTG 61.185 55.000 0.00 1.17 42.11 3.33
54 55 0.898326 GAGGCCCAACCCGAATTGTT 60.898 55.000 0.00 0.00 40.58 2.83
55 56 1.304134 GAGGCCCAACCCGAATTGT 60.304 57.895 0.00 0.00 40.58 2.71
56 57 2.052104 GGAGGCCCAACCCGAATTG 61.052 63.158 0.00 0.00 40.58 2.32
57 58 2.359011 GGAGGCCCAACCCGAATT 59.641 61.111 0.00 0.00 40.58 2.17
58 59 4.109675 CGGAGGCCCAACCCGAAT 62.110 66.667 15.73 0.00 45.58 3.34
70 71 3.601194 GGGCTAACCTACTAACCGGAGG 61.601 59.091 9.46 6.51 46.88 4.30
71 72 1.685517 GGGCTAACCTACTAACCGGAG 59.314 57.143 9.46 0.00 35.85 4.63
72 73 1.006998 TGGGCTAACCTACTAACCGGA 59.993 52.381 9.46 0.00 41.11 5.14
73 74 1.488390 TGGGCTAACCTACTAACCGG 58.512 55.000 0.00 0.00 41.11 5.28
74 75 4.942761 TTATGGGCTAACCTACTAACCG 57.057 45.455 0.00 0.00 41.11 4.44
75 76 6.541278 CACTTTTATGGGCTAACCTACTAACC 59.459 42.308 0.00 0.00 41.11 2.85
76 77 7.108194 ACACTTTTATGGGCTAACCTACTAAC 58.892 38.462 0.00 0.00 41.11 2.34
77 78 7.261688 ACACTTTTATGGGCTAACCTACTAA 57.738 36.000 0.00 0.00 41.11 2.24
78 79 6.879367 ACACTTTTATGGGCTAACCTACTA 57.121 37.500 0.00 0.00 41.11 1.82
79 80 5.774102 ACACTTTTATGGGCTAACCTACT 57.226 39.130 0.00 0.00 41.11 2.57
80 81 7.609146 ACTTTACACTTTTATGGGCTAACCTAC 59.391 37.037 0.00 0.00 41.11 3.18
81 82 7.692172 ACTTTACACTTTTATGGGCTAACCTA 58.308 34.615 0.00 0.00 41.11 3.08
82 83 6.549242 ACTTTACACTTTTATGGGCTAACCT 58.451 36.000 0.00 0.00 41.11 3.50
83 84 6.829229 ACTTTACACTTTTATGGGCTAACC 57.171 37.500 0.00 0.00 40.81 2.85
84 85 9.836076 CTTTACTTTACACTTTTATGGGCTAAC 57.164 33.333 0.00 0.00 0.00 2.34
85 86 8.517056 GCTTTACTTTACACTTTTATGGGCTAA 58.483 33.333 0.00 0.00 0.00 3.09
86 87 7.886446 AGCTTTACTTTACACTTTTATGGGCTA 59.114 33.333 0.00 0.00 0.00 3.93
87 88 6.719829 AGCTTTACTTTACACTTTTATGGGCT 59.280 34.615 0.00 0.00 0.00 5.19
88 89 6.920817 AGCTTTACTTTACACTTTTATGGGC 58.079 36.000 0.00 0.00 0.00 5.36
89 90 8.106247 TGAGCTTTACTTTACACTTTTATGGG 57.894 34.615 0.00 0.00 0.00 4.00
97 98 8.947115 GGATGTTTATGAGCTTTACTTTACACT 58.053 33.333 0.00 0.00 0.00 3.55
98 99 8.726988 TGGATGTTTATGAGCTTTACTTTACAC 58.273 33.333 0.00 0.00 0.00 2.90
99 100 8.856153 TGGATGTTTATGAGCTTTACTTTACA 57.144 30.769 0.00 0.00 0.00 2.41
102 103 9.476202 GTTTTGGATGTTTATGAGCTTTACTTT 57.524 29.630 0.00 0.00 0.00 2.66
103 104 8.637986 TGTTTTGGATGTTTATGAGCTTTACTT 58.362 29.630 0.00 0.00 0.00 2.24
104 105 8.177119 TGTTTTGGATGTTTATGAGCTTTACT 57.823 30.769 0.00 0.00 0.00 2.24
105 106 7.542130 CCTGTTTTGGATGTTTATGAGCTTTAC 59.458 37.037 0.00 0.00 0.00 2.01
106 107 7.232534 ACCTGTTTTGGATGTTTATGAGCTTTA 59.767 33.333 0.00 0.00 0.00 1.85
107 108 6.041979 ACCTGTTTTGGATGTTTATGAGCTTT 59.958 34.615 0.00 0.00 0.00 3.51
108 109 5.539955 ACCTGTTTTGGATGTTTATGAGCTT 59.460 36.000 0.00 0.00 0.00 3.74
109 110 5.079643 ACCTGTTTTGGATGTTTATGAGCT 58.920 37.500 0.00 0.00 0.00 4.09
110 111 5.391312 ACCTGTTTTGGATGTTTATGAGC 57.609 39.130 0.00 0.00 0.00 4.26
118 119 9.860650 TGCTATTATATTACCTGTTTTGGATGT 57.139 29.630 0.00 0.00 0.00 3.06
121 122 9.295825 CCATGCTATTATATTACCTGTTTTGGA 57.704 33.333 0.00 0.00 0.00 3.53
122 123 9.295825 TCCATGCTATTATATTACCTGTTTTGG 57.704 33.333 0.00 0.00 0.00 3.28
125 126 9.860650 TGTTCCATGCTATTATATTACCTGTTT 57.139 29.630 0.00 0.00 0.00 2.83
126 127 9.860650 TTGTTCCATGCTATTATATTACCTGTT 57.139 29.630 0.00 0.00 0.00 3.16
152 153 9.193133 CGTCTCCACGTATCTATAATTTTTGAT 57.807 33.333 0.00 0.00 41.42 2.57
153 154 8.570096 CGTCTCCACGTATCTATAATTTTTGA 57.430 34.615 0.00 0.00 41.42 2.69
170 171 4.620184 GTCGGCATATTAATACGTCTCCAC 59.380 45.833 0.00 0.00 0.00 4.02
171 172 4.614306 CGTCGGCATATTAATACGTCTCCA 60.614 45.833 0.00 0.00 0.00 3.86
172 173 3.850273 CGTCGGCATATTAATACGTCTCC 59.150 47.826 0.00 0.00 0.00 3.71
173 174 3.850273 CCGTCGGCATATTAATACGTCTC 59.150 47.826 0.00 0.00 0.00 3.36
174 175 3.829948 CCGTCGGCATATTAATACGTCT 58.170 45.455 0.00 0.00 0.00 4.18
207 208 2.259511 GAAACTACGCCGACGGGT 59.740 61.111 17.22 14.07 46.04 5.28
208 209 2.877582 CGAAACTACGCCGACGGG 60.878 66.667 17.22 8.43 46.04 5.28
209 210 2.148365 GTCGAAACTACGCCGACGG 61.148 63.158 10.29 10.29 46.04 4.79
210 211 3.356640 GTCGAAACTACGCCGACG 58.643 61.111 0.00 0.00 42.24 5.12
211 212 1.391396 GACGTCGAAACTACGCCGAC 61.391 60.000 0.00 0.00 46.27 4.79
212 213 1.154413 GACGTCGAAACTACGCCGA 60.154 57.895 0.00 0.00 44.04 5.54
213 214 2.483044 CGACGTCGAAACTACGCCG 61.483 63.158 33.35 0.53 44.04 6.46
214 215 1.391396 GACGACGTCGAAACTACGCC 61.391 60.000 41.52 15.32 44.04 5.68
215 216 0.722469 TGACGACGTCGAAACTACGC 60.722 55.000 41.52 19.46 44.04 4.42
216 217 1.636135 CTTGACGACGTCGAAACTACG 59.364 52.381 41.52 19.15 45.64 3.51
217 218 1.381429 GCTTGACGACGTCGAAACTAC 59.619 52.381 41.52 22.15 43.02 2.73
218 219 1.678360 GCTTGACGACGTCGAAACTA 58.322 50.000 41.52 25.06 43.02 2.24
219 220 2.503256 GCTTGACGACGTCGAAACT 58.497 52.632 41.52 21.67 43.02 2.66
225 226 3.868951 ACGACCGCTTGACGACGTC 62.869 63.158 20.97 20.97 45.60 4.34
237 238 4.778415 CCCAGTCAGCGACGACCG 62.778 72.222 0.00 0.00 37.67 4.79
238 239 2.267681 CTACCCAGTCAGCGACGACC 62.268 65.000 0.00 0.00 37.67 4.79
239 240 1.136984 CTACCCAGTCAGCGACGAC 59.863 63.158 0.00 0.00 37.67 4.34
240 241 2.044555 CCTACCCAGTCAGCGACGA 61.045 63.158 0.00 0.00 37.67 4.20
241 242 2.341101 ACCTACCCAGTCAGCGACG 61.341 63.158 0.00 0.00 37.67 5.12
242 243 1.215647 CACCTACCCAGTCAGCGAC 59.784 63.158 0.00 1.15 0.00 5.19
243 244 1.982395 CCACCTACCCAGTCAGCGA 60.982 63.158 0.00 0.00 0.00 4.93
244 245 2.579201 CCACCTACCCAGTCAGCG 59.421 66.667 0.00 0.00 0.00 5.18
245 246 2.990479 CCCACCTACCCAGTCAGC 59.010 66.667 0.00 0.00 0.00 4.26
246 247 2.670148 GGCCCACCTACCCAGTCAG 61.670 68.421 0.00 0.00 0.00 3.51
247 248 2.609610 GGCCCACCTACCCAGTCA 60.610 66.667 0.00 0.00 0.00 3.41
248 249 3.408853 GGGCCCACCTACCCAGTC 61.409 72.222 19.95 0.00 46.22 3.51
253 254 1.131928 ATATTCCGGGCCCACCTACC 61.132 60.000 24.92 0.00 36.97 3.18
254 255 0.036306 CATATTCCGGGCCCACCTAC 59.964 60.000 24.92 0.00 36.97 3.18
255 256 1.774894 GCATATTCCGGGCCCACCTA 61.775 60.000 24.92 7.74 36.97 3.08
256 257 3.133365 GCATATTCCGGGCCCACCT 62.133 63.158 24.92 5.40 36.97 4.00
257 258 2.597510 GCATATTCCGGGCCCACC 60.598 66.667 24.92 0.00 0.00 4.61
258 259 2.597510 GGCATATTCCGGGCCCAC 60.598 66.667 24.92 0.00 41.90 4.61
259 260 4.263572 CGGCATATTCCGGGCCCA 62.264 66.667 24.92 1.51 44.90 5.36
282 283 2.952245 CGAGATACGCCTACGGGG 59.048 66.667 0.00 0.00 46.04 5.73
291 292 4.977126 GGGACCGCGCGAGATACG 62.977 72.222 34.63 16.26 45.66 3.06
303 304 4.222847 GATGAGGCCGTCGGGACC 62.223 72.222 14.38 6.62 45.55 4.46
304 305 1.179814 ATAGATGAGGCCGTCGGGAC 61.180 60.000 14.38 0.00 44.27 4.46
305 306 1.153061 ATAGATGAGGCCGTCGGGA 59.847 57.895 14.38 0.00 34.06 5.14
306 307 1.290324 CATAGATGAGGCCGTCGGG 59.710 63.158 14.38 0.00 33.59 5.14
307 308 1.373497 GCATAGATGAGGCCGTCGG 60.373 63.158 6.99 6.99 33.59 4.79
308 309 1.373497 GGCATAGATGAGGCCGTCG 60.373 63.158 0.00 0.00 46.91 5.12
309 310 4.683432 GGCATAGATGAGGCCGTC 57.317 61.111 0.00 0.00 46.91 4.79
313 314 1.373497 CCGTCGGCATAGATGAGGC 60.373 63.158 0.00 0.00 0.00 4.70
314 315 4.974792 CCGTCGGCATAGATGAGG 57.025 61.111 0.00 0.00 0.00 3.86
332 333 2.159819 CTCATCTATGCCGACGGGGG 62.160 65.000 17.22 0.00 35.78 5.40
333 334 1.290324 CTCATCTATGCCGACGGGG 59.710 63.158 17.22 0.00 39.58 5.73
334 335 1.179174 TCCTCATCTATGCCGACGGG 61.179 60.000 17.22 0.00 0.00 5.28
335 336 0.242286 CTCCTCATCTATGCCGACGG 59.758 60.000 10.29 10.29 0.00 4.79
336 337 0.242286 CCTCCTCATCTATGCCGACG 59.758 60.000 0.00 0.00 0.00 5.12
337 338 0.037790 GCCTCCTCATCTATGCCGAC 60.038 60.000 0.00 0.00 0.00 4.79
338 339 1.188219 GGCCTCCTCATCTATGCCGA 61.188 60.000 0.00 0.00 0.00 5.54
339 340 1.294780 GGCCTCCTCATCTATGCCG 59.705 63.158 0.00 0.00 0.00 5.69
340 341 1.188219 TCGGCCTCCTCATCTATGCC 61.188 60.000 0.00 0.00 35.55 4.40
341 342 0.901124 ATCGGCCTCCTCATCTATGC 59.099 55.000 0.00 0.00 0.00 3.14
342 343 1.206610 CCATCGGCCTCCTCATCTATG 59.793 57.143 0.00 0.00 0.00 2.23
343 344 1.566211 CCATCGGCCTCCTCATCTAT 58.434 55.000 0.00 0.00 0.00 1.98
344 345 1.188219 GCCATCGGCCTCCTCATCTA 61.188 60.000 0.00 0.00 44.06 1.98
345 346 2.515071 GCCATCGGCCTCCTCATCT 61.515 63.158 0.00 0.00 44.06 2.90
346 347 2.031768 GCCATCGGCCTCCTCATC 59.968 66.667 0.00 0.00 44.06 2.92
356 357 3.261897 AGAATATCCACTTAGGCCATCGG 59.738 47.826 5.01 0.00 37.29 4.18
357 358 4.248859 CAGAATATCCACTTAGGCCATCG 58.751 47.826 5.01 0.00 37.29 3.84
358 359 4.042187 ACCAGAATATCCACTTAGGCCATC 59.958 45.833 5.01 0.00 37.29 3.51
359 360 3.983410 ACCAGAATATCCACTTAGGCCAT 59.017 43.478 5.01 0.00 37.29 4.40
360 361 3.393687 ACCAGAATATCCACTTAGGCCA 58.606 45.455 5.01 0.00 37.29 5.36
361 362 4.593634 ACTACCAGAATATCCACTTAGGCC 59.406 45.833 0.00 0.00 37.29 5.19
362 363 5.070580 ACACTACCAGAATATCCACTTAGGC 59.929 44.000 0.00 0.00 37.29 3.93
363 364 6.515200 CGACACTACCAGAATATCCACTTAGG 60.515 46.154 0.00 0.00 39.47 2.69
364 365 6.262496 TCGACACTACCAGAATATCCACTTAG 59.738 42.308 0.00 0.00 0.00 2.18
365 366 6.124340 TCGACACTACCAGAATATCCACTTA 58.876 40.000 0.00 0.00 0.00 2.24
366 367 4.954202 TCGACACTACCAGAATATCCACTT 59.046 41.667 0.00 0.00 0.00 3.16
367 368 4.533815 TCGACACTACCAGAATATCCACT 58.466 43.478 0.00 0.00 0.00 4.00
368 369 4.338682 ACTCGACACTACCAGAATATCCAC 59.661 45.833 0.00 0.00 0.00 4.02
369 370 4.338400 CACTCGACACTACCAGAATATCCA 59.662 45.833 0.00 0.00 0.00 3.41
370 371 4.579340 TCACTCGACACTACCAGAATATCC 59.421 45.833 0.00 0.00 0.00 2.59
371 372 5.297278 AGTCACTCGACACTACCAGAATATC 59.703 44.000 0.00 0.00 45.23 1.63
372 373 5.194432 AGTCACTCGACACTACCAGAATAT 58.806 41.667 0.00 0.00 45.23 1.28
373 374 4.586884 AGTCACTCGACACTACCAGAATA 58.413 43.478 0.00 0.00 45.23 1.75
374 375 3.422796 AGTCACTCGACACTACCAGAAT 58.577 45.455 0.00 0.00 45.23 2.40
375 376 2.812591 GAGTCACTCGACACTACCAGAA 59.187 50.000 0.00 0.00 45.23 3.02
376 377 2.038689 AGAGTCACTCGACACTACCAGA 59.961 50.000 0.00 0.00 45.23 3.86
377 378 2.428491 AGAGTCACTCGACACTACCAG 58.572 52.381 0.00 0.00 45.23 4.00
378 379 2.563261 AGAGTCACTCGACACTACCA 57.437 50.000 0.00 0.00 45.23 3.25
379 380 5.564048 AAATAGAGTCACTCGACACTACC 57.436 43.478 0.00 0.00 44.66 3.18
380 381 7.082602 TGAAAAATAGAGTCACTCGACACTAC 58.917 38.462 0.00 0.00 44.66 2.73
381 382 7.210718 TGAAAAATAGAGTCACTCGACACTA 57.789 36.000 0.00 2.91 45.52 2.74
382 383 6.085555 TGAAAAATAGAGTCACTCGACACT 57.914 37.500 0.00 0.00 45.23 3.55
383 384 6.366332 ACATGAAAAATAGAGTCACTCGACAC 59.634 38.462 0.00 0.00 45.23 3.67
384 385 6.455647 ACATGAAAAATAGAGTCACTCGACA 58.544 36.000 0.00 0.00 45.23 4.35
385 386 6.952935 ACATGAAAAATAGAGTCACTCGAC 57.047 37.500 0.00 0.00 42.95 4.20
386 387 7.544566 GGTTACATGAAAAATAGAGTCACTCGA 59.455 37.037 0.00 0.00 35.36 4.04
387 388 7.201530 GGGTTACATGAAAAATAGAGTCACTCG 60.202 40.741 0.00 0.00 35.36 4.18
388 389 7.065923 GGGGTTACATGAAAAATAGAGTCACTC 59.934 40.741 0.00 0.00 0.00 3.51
465 466 5.938322 TGTTCTTGTTTTGAGGAATATCGC 58.062 37.500 0.00 0.00 0.00 4.58
481 482 9.688592 AAGCAAAGAAAGATTAGATTGTTCTTG 57.311 29.630 0.00 0.00 38.28 3.02
597 598 6.413783 TGTCACTAACTGGTGTCAAGATTA 57.586 37.500 0.00 0.00 38.28 1.75
648 2705 9.449719 CATATATATTTTTCTAGGGTGGGTCAC 57.550 37.037 0.00 0.00 0.00 3.67
695 2752 1.820519 TGCACCATCAGCCATCTTTTC 59.179 47.619 0.00 0.00 0.00 2.29
711 2768 4.342772 GTTTCATGTCGGTATCAATGCAC 58.657 43.478 0.00 0.00 0.00 4.57
717 2774 6.100668 TGTATTTCGTTTCATGTCGGTATCA 58.899 36.000 0.00 0.00 0.00 2.15
871 2975 2.480419 GCTTGTTGCTATTCTGTGTCGT 59.520 45.455 0.00 0.00 38.95 4.34
919 3025 5.279384 GCAGATAGTATTTCGAACCGAAGA 58.721 41.667 0.00 0.00 46.43 2.87
1295 3452 5.160386 AGGAAGGTTTGGTTTAGTAGGAGA 58.840 41.667 0.00 0.00 0.00 3.71
1298 3455 5.012768 TGAGAGGAAGGTTTGGTTTAGTAGG 59.987 44.000 0.00 0.00 0.00 3.18
1328 3488 1.671379 GCTCCACCCCGTCAGAAAC 60.671 63.158 0.00 0.00 0.00 2.78
1582 3802 1.070786 GAACACAGTGAGGGCCGAA 59.929 57.895 7.81 0.00 0.00 4.30
1642 3862 5.011738 TCCGAACTTGAAGTAGTGGAAATCT 59.988 40.000 9.73 0.00 0.00 2.40
1645 3865 4.100498 ACTCCGAACTTGAAGTAGTGGAAA 59.900 41.667 12.28 0.00 0.00 3.13
1666 3886 0.318445 GGTTCGTCTGCGTGTACACT 60.318 55.000 23.01 0.00 39.49 3.55
1778 3999 3.624777 CAGTCCCCAACTAATTCATGCT 58.375 45.455 0.00 0.00 36.07 3.79
1789 4011 3.081804 CAAATGTACTCCAGTCCCCAAC 58.918 50.000 0.00 0.00 0.00 3.77
1830 4052 6.892456 TGCCCCATCACACTAATACAAAATTA 59.108 34.615 0.00 0.00 0.00 1.40
1851 4077 3.443681 CCGTATCCATTTATCCATTGCCC 59.556 47.826 0.00 0.00 0.00 5.36
1969 4548 2.810650 ACGGCTTTAGATGCTCTTACG 58.189 47.619 0.00 0.00 0.00 3.18
1983 4562 0.472471 TGGTTTGAGAGGAACGGCTT 59.528 50.000 0.00 0.00 0.00 4.35
2000 4579 1.872952 TCTGCACACGTTTGAGAATGG 59.127 47.619 5.75 0.00 0.00 3.16
2011 4590 2.382746 CCGGACACATCTGCACACG 61.383 63.158 0.00 0.00 0.00 4.49
2014 4593 1.005037 TGACCGGACACATCTGCAC 60.005 57.895 9.46 0.00 0.00 4.57
2034 4613 5.425577 TTTCCTTCTCTCATCTACGATCG 57.574 43.478 14.88 14.88 0.00 3.69
2063 4642 4.704833 CCACACCAGCTCACGGGG 62.705 72.222 0.00 0.00 35.07 5.73
2068 4647 4.314440 GGTCGCCACACCAGCTCA 62.314 66.667 0.00 0.00 36.32 4.26
2094 4673 4.814294 GTCCCGCACGATCCGCTT 62.814 66.667 0.00 0.00 0.00 4.68
2117 4696 2.038813 TCCAGCAGGATCGGACCA 59.961 61.111 0.00 0.00 39.61 4.02
2128 4707 4.147449 CCGACGCCAGATCCAGCA 62.147 66.667 5.51 0.00 0.00 4.41
2195 4774 4.530857 CCGATCCACGACAGGGCC 62.531 72.222 0.00 0.00 45.77 5.80
2202 4781 2.994995 ACTGCCACCGATCCACGA 60.995 61.111 0.00 0.00 45.77 4.35
2216 4795 3.121030 GCCACGCCAGTAGCACTG 61.121 66.667 8.73 8.73 45.53 3.66
2223 4803 4.320456 CACCTCAGCCACGCCAGT 62.320 66.667 0.00 0.00 0.00 4.00
2267 4847 3.327404 GGAGGAAGGCCCAACCGA 61.327 66.667 0.00 0.00 46.52 4.69
2285 4865 2.250939 CGCCGTTGTTCAGAAGCCA 61.251 57.895 0.00 0.00 0.00 4.75
2305 4885 2.663204 GATGGGCCCAAGGGAATCCC 62.663 65.000 32.58 11.16 45.90 3.85
2306 4886 1.152461 GATGGGCCCAAGGGAATCC 60.152 63.158 32.58 6.79 37.50 3.01
2307 4887 1.152461 GGATGGGCCCAAGGGAATC 60.152 63.158 32.58 20.80 37.50 2.52
2308 4888 1.231042 AAGGATGGGCCCAAGGGAAT 61.231 55.000 32.58 11.79 37.37 3.01
2309 4889 1.861656 AAGGATGGGCCCAAGGGAA 60.862 57.895 32.58 3.36 37.37 3.97
2310 4890 2.204448 AAGGATGGGCCCAAGGGA 60.204 61.111 32.58 4.35 37.37 4.20
2311 4891 2.042639 CAAGGATGGGCCCAAGGG 60.043 66.667 32.58 13.31 37.37 3.95
2312 4892 2.042639 CCAAGGATGGGCCCAAGG 60.043 66.667 32.58 21.17 43.51 3.61
2321 4901 1.338200 GGTAGATAGCCGCCAAGGATG 60.338 57.143 0.00 0.00 45.00 3.51
2322 4902 0.977395 GGTAGATAGCCGCCAAGGAT 59.023 55.000 0.00 0.00 45.00 3.24
2323 4903 1.119574 GGGTAGATAGCCGCCAAGGA 61.120 60.000 0.00 0.00 45.00 3.36
2324 4904 1.371558 GGGTAGATAGCCGCCAAGG 59.628 63.158 0.00 0.00 44.97 3.61
2325 4905 1.371558 GGGGTAGATAGCCGCCAAG 59.628 63.158 2.18 0.00 44.60 3.61
2326 4906 3.558475 GGGGTAGATAGCCGCCAA 58.442 61.111 2.18 0.00 44.60 4.52
2330 4910 1.258676 GAAGAGGGGGTAGATAGCCG 58.741 60.000 2.18 0.00 44.60 5.52
2331 4911 1.258676 CGAAGAGGGGGTAGATAGCC 58.741 60.000 0.00 0.00 42.98 3.93
2332 4912 1.258676 CCGAAGAGGGGGTAGATAGC 58.741 60.000 0.00 0.00 35.97 2.97
2333 4913 1.258676 GCCGAAGAGGGGGTAGATAG 58.741 60.000 0.00 0.00 41.48 2.08
2334 4914 0.559205 TGCCGAAGAGGGGGTAGATA 59.441 55.000 0.00 0.00 41.48 1.98
2335 4915 0.760945 CTGCCGAAGAGGGGGTAGAT 60.761 60.000 0.00 0.00 38.17 1.98
2336 4916 1.381327 CTGCCGAAGAGGGGGTAGA 60.381 63.158 0.00 0.00 38.17 2.59
2337 4917 2.435693 CCTGCCGAAGAGGGGGTAG 61.436 68.421 0.00 0.00 41.48 3.18
2338 4918 2.365105 CCTGCCGAAGAGGGGGTA 60.365 66.667 0.00 0.00 41.48 3.69
2688 5268 2.526873 CCCCATCCCTCCTACCGG 60.527 72.222 0.00 0.00 0.00 5.28
2689 5269 3.242291 GCCCCATCCCTCCTACCG 61.242 72.222 0.00 0.00 0.00 4.02
2690 5270 1.843832 GAGCCCCATCCCTCCTACC 60.844 68.421 0.00 0.00 0.00 3.18
2691 5271 1.843832 GGAGCCCCATCCCTCCTAC 60.844 68.421 0.00 0.00 43.42 3.18
2692 5272 1.908637 TTGGAGCCCCATCCCTCCTA 61.909 60.000 8.04 0.00 46.23 2.94
2693 5273 3.287954 TTGGAGCCCCATCCCTCCT 62.288 63.158 8.04 0.00 46.23 3.69
2694 5274 2.696125 TTGGAGCCCCATCCCTCC 60.696 66.667 0.00 0.00 46.25 4.30
2695 5275 2.597903 GTTGGAGCCCCATCCCTC 59.402 66.667 0.00 0.00 43.12 4.30
2696 5276 3.411517 CGTTGGAGCCCCATCCCT 61.412 66.667 0.00 0.00 43.12 4.20
2697 5277 3.728373 ACGTTGGAGCCCCATCCC 61.728 66.667 0.00 0.00 43.12 3.85
2698 5278 2.438434 CACGTTGGAGCCCCATCC 60.438 66.667 0.00 0.00 43.12 3.51
2699 5279 2.438434 CCACGTTGGAGCCCCATC 60.438 66.667 0.00 0.00 43.12 3.51
2700 5280 3.256960 ACCACGTTGGAGCCCCAT 61.257 61.111 10.46 0.00 43.12 4.00
2701 5281 3.948719 GACCACGTTGGAGCCCCA 61.949 66.667 10.46 0.00 40.96 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.