AutoCloner

Multiple sequence alignment - TraesCS7B01G416800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G416800	chr7B	100.000	3443	0	0	1	3443	684983502	684980060	0.000000e+00	6359.0
1	TraesCS7B01G416800	chr7B	96.456	1947	48	2	1517	3443	697385641	697383696	0.000000e+00	3193.0
2	TraesCS7B01G416800	chr7B	90.936	1688	135	11	937	2613	698974374	698976054	0.000000e+00	2254.0
3	TraesCS7B01G416800	chr7B	90.818	1688	137	11	937	2613	693439695	693441375	0.000000e+00	2242.0
4	TraesCS7B01G416800	chr7B	91.087	1638	132	6	981	2613	695261944	695260316	0.000000e+00	2204.0
5	TraesCS7B01G416800	chr7B	90.242	1650	157	2	977	2623	698503756	698505404	0.000000e+00	2152.0
6	TraesCS7B01G416800	chr7B	87.561	1640	161	21	985	2613	694824690	694823083	0.000000e+00	1858.0
7	TraesCS7B01G416800	chr7B	94.157	890	23	4	1	890	697395411	697394551	0.000000e+00	1328.0
8	TraesCS7B01G416800	chr7B	96.569	583	20	0	945	1527	697394546	697393964	0.000000e+00	966.0
9	TraesCS7B01G416800	chr7B	91.058	671	51	6	2777	3443	698505727	698506392	0.000000e+00	898.0
10	TraesCS7B01G416800	chr7B	90.441	680	51	10	2769	3443	699158981	699159651	0.000000e+00	883.0
11	TraesCS7B01G416800	chr7B	96.875	64	2	0	1	64	697397860	697397797	1.310000e-19	108.0
12	TraesCS7B01G416800	chr7B	83.516	91	11	3	581	669	377594992	377594904	7.920000e-12	82.4
13	TraesCS7B01G416800	chr7B	93.333	45	0	2	436	480	697400052	697400011	2.870000e-06	63.9
14	TraesCS7B01G416800	chr7D	92.102	1684	122	7	937	2613	610623475	610621796	0.000000e+00	2362.0
15	TraesCS7B01G416800	chr7D	91.922	1696	124	8	937	2623	608122689	608124380	0.000000e+00	2361.0
16	TraesCS7B01G416800	chr7D	91.711	1122	74	10	1445	2566	514346917	514345815	0.000000e+00	1539.0
17	TraesCS7B01G416800	chr7D	90.735	680	53	9	2769	3443	608124698	608125372	0.000000e+00	898.0
18	TraesCS7B01G416800	chr7D	85.303	694	59	23	2772	3443	600274454	600273782	0.000000e+00	676.0
19	TraesCS7B01G416800	chr7D	84.493	690	70	20	2777	3443	514342586	514341911	0.000000e+00	647.0
20	TraesCS7B01G416800	chr7D	84.294	694	71	20	2772	3443	610603971	610603294	0.000000e+00	643.0
21	TraesCS7B01G416800	chr7A	91.457	1627	103	8	999	2613	700535294	700533692	0.000000e+00	2202.0
22	TraesCS7B01G416800	chr7A	83.516	91	11	3	581	669	40833767	40833679	7.920000e-12	82.4
23	TraesCS7B01G416800	chr2A	83.846	130	20	1	539	667	86649855	86649726	4.670000e-24	122.0
24	TraesCS7B01G416800	chr3B	83.516	91	11	3	581	669	740858694	740858782	7.920000e-12	82.4
25	TraesCS7B01G416800	chr5B	86.486	74	6	3	581	652	585013374	585013303	1.020000e-10	78.7
26	TraesCS7B01G416800	chr5B	82.105	95	12	4	581	673	660928841	660928750	3.680000e-10	76.8
27	TraesCS7B01G416800	chr4B	86.486	74	6	3	581	652	177225799	177225728	1.020000e-10	78.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G416800	chr7B	684980060	684983502	3442	True	6359.000	6359	100.0000	1	3443	1	chr7B.!!$R2	3442
1	TraesCS7B01G416800	chr7B	697383696	697385641	1945	True	3193.000	3193	96.4560	1517	3443	1	chr7B.!!$R5	1926
2	TraesCS7B01G416800	chr7B	698974374	698976054	1680	False	2254.000	2254	90.9360	937	2613	1	chr7B.!!$F2	1676
3	TraesCS7B01G416800	chr7B	693439695	693441375	1680	False	2242.000	2242	90.8180	937	2613	1	chr7B.!!$F1	1676
4	TraesCS7B01G416800	chr7B	695260316	695261944	1628	True	2204.000	2204	91.0870	981	2613	1	chr7B.!!$R4	1632
5	TraesCS7B01G416800	chr7B	694823083	694824690	1607	True	1858.000	1858	87.5610	985	2613	1	chr7B.!!$R3	1628
6	TraesCS7B01G416800	chr7B	698503756	698506392	2636	False	1525.000	2152	90.6500	977	3443	2	chr7B.!!$F4	2466
7	TraesCS7B01G416800	chr7B	699158981	699159651	670	False	883.000	883	90.4410	2769	3443	1	chr7B.!!$F3	674
8	TraesCS7B01G416800	chr7B	697393964	697400052	6088	True	616.475	1328	95.2335	1	1527	4	chr7B.!!$R6	1526
9	TraesCS7B01G416800	chr7D	610621796	610623475	1679	True	2362.000	2362	92.1020	937	2613	1	chr7D.!!$R3	1676
10	TraesCS7B01G416800	chr7D	608122689	608125372	2683	False	1629.500	2361	91.3285	937	3443	2	chr7D.!!$F1	2506
11	TraesCS7B01G416800	chr7D	514341911	514346917	5006	True	1093.000	1539	88.1020	1445	3443	2	chr7D.!!$R4	1998
12	TraesCS7B01G416800	chr7D	600273782	600274454	672	True	676.000	676	85.3030	2772	3443	1	chr7D.!!$R1	671
13	TraesCS7B01G416800	chr7D	610603294	610603971	677	True	643.000	643	84.2940	2772	3443	1	chr7D.!!$R2	671
14	TraesCS7B01G416800	chr7A	700533692	700535294	1602	True	2202.000	2202	91.4570	999	2613	1	chr7A.!!$R2	1614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
614	5256	0.180642	TGTGTTGCTTGGTTCCGGTA	59.819	50.0	0.00	0.00	0.00	4.02	F
1770	6440	0.250640	AGGTCAAGCACAGCTCCTTG	60.251	55.0	10.55	10.55	38.25	3.61	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2398	9921	0.901580	AAGGAAACCATGCCAGCCAG	60.902	55.0	0.0	0.0	0.0	4.85	R
2623	10168	3.198068	CAACACTACCAATCCCGATCTG	58.802	50.0	0.0	0.0	0.0	2.90	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
78	4720	1.316443	GCGAAATAAGAAAAACGGCGC	59.684	47.619	6.90	0.00	35.08	6.53
108	4750	5.875910	AGCGCGTCTATACTTCTAGTATCAT	59.124	40.000	8.43	0.00	40.37	2.45
159	4801	8.272173	CCCTTAACCAGGTGAATCTATAAAAGA	58.728	37.037	0.00	0.00	42.02	2.52
160	4802	9.331282	CCTTAACCAGGTGAATCTATAAAAGAG	57.669	37.037	0.00	0.00	36.26	2.85
188	4830	7.328493	GTGTGTAAATTAAGGTTCTGCCATTTC	59.672	37.037	0.00	0.00	40.61	2.17
297	4939	8.305317	CCTGTCTAGTTAGTAGTTACAAAAGCT	58.695	37.037	0.00	0.00	0.00	3.74
300	4942	9.127006	GTCTAGTTAGTAGTTACAAAAGCTGAC	57.873	37.037	0.00	0.00	0.00	3.51
317	4959	2.800544	CTGACACTTACAAGGTTGTCCG	59.199	50.000	0.00	0.00	42.35	4.79
362	5004	9.462174	CTAGAGAACTGATTTGTTATGCTCTAG	57.538	37.037	0.00	0.00	39.62	2.43
372	5014	9.771534	GATTTGTTATGCTCTAGAACTCCTTAT	57.228	33.333	0.00	0.00	31.82	1.73
507	5149	8.579863	ACAGTTATCTTCAATCCTTTTTCCTTG	58.420	33.333	0.00	0.00	0.00	3.61
537	5179	8.251026	TGTTAGAATATATTCGATAGCACAGGG	58.749	37.037	17.69	0.00	41.56	4.45
605	5247	5.048504	ACACTAGGATTGATTGTGTTGCTTG	60.049	40.000	0.00	0.00	38.51	4.01
606	5248	3.947910	AGGATTGATTGTGTTGCTTGG	57.052	42.857	0.00	0.00	0.00	3.61
607	5249	3.233507	AGGATTGATTGTGTTGCTTGGT	58.766	40.909	0.00	0.00	0.00	3.67
608	5250	3.642848	AGGATTGATTGTGTTGCTTGGTT	59.357	39.130	0.00	0.00	0.00	3.67
609	5251	3.989817	GGATTGATTGTGTTGCTTGGTTC	59.010	43.478	0.00	0.00	0.00	3.62
610	5252	3.451141	TTGATTGTGTTGCTTGGTTCC	57.549	42.857	0.00	0.00	0.00	3.62
611	5253	1.336440	TGATTGTGTTGCTTGGTTCCG	59.664	47.619	0.00	0.00	0.00	4.30
612	5254	0.673437	ATTGTGTTGCTTGGTTCCGG	59.327	50.000	0.00	0.00	0.00	5.14
613	5255	0.681564	TTGTGTTGCTTGGTTCCGGT	60.682	50.000	0.00	0.00	0.00	5.28
614	5256	0.180642	TGTGTTGCTTGGTTCCGGTA	59.819	50.000	0.00	0.00	0.00	4.02
615	5257	1.202830	TGTGTTGCTTGGTTCCGGTAT	60.203	47.619	0.00	0.00	0.00	2.73
616	5258	1.467342	GTGTTGCTTGGTTCCGGTATC	59.533	52.381	0.00	0.00	0.00	2.24
617	5259	1.349688	TGTTGCTTGGTTCCGGTATCT	59.650	47.619	0.00	0.00	0.00	1.98
618	5260	1.737793	GTTGCTTGGTTCCGGTATCTG	59.262	52.381	0.00	0.00	0.00	2.90
619	5261	1.271856	TGCTTGGTTCCGGTATCTGA	58.728	50.000	0.00	0.00	0.00	3.27
699	5341	6.486657	TGCTAGTTCTTTGCTATCAACTGTTT	59.513	34.615	0.00	0.00	31.52	2.83
737	5379	4.096382	ACTGGAGAACAAATGTGTGTGAAC	59.904	41.667	0.00	0.00	38.27	3.18
749	5391	4.980590	TGTGTGTGAACTGTGAAAATGAC	58.019	39.130	0.00	0.00	0.00	3.06
769	5411	6.561737	TGACCAATAAACGCTTCAACAATA	57.438	33.333	0.00	0.00	0.00	1.90
770	5412	6.375377	TGACCAATAAACGCTTCAACAATAC	58.625	36.000	0.00	0.00	0.00	1.89
771	5413	6.017026	TGACCAATAAACGCTTCAACAATACA	60.017	34.615	0.00	0.00	0.00	2.29
772	5414	6.740110	ACCAATAAACGCTTCAACAATACAA	58.260	32.000	0.00	0.00	0.00	2.41
773	5415	6.861055	ACCAATAAACGCTTCAACAATACAAG	59.139	34.615	0.00	0.00	0.00	3.16
774	5416	6.307800	CCAATAAACGCTTCAACAATACAAGG	59.692	38.462	0.00	0.00	0.00	3.61
775	5417	3.915437	AACGCTTCAACAATACAAGGG	57.085	42.857	0.00	0.00	36.44	3.95
776	5418	2.858745	ACGCTTCAACAATACAAGGGT	58.141	42.857	0.00	0.00	38.20	4.34
777	5419	2.552315	ACGCTTCAACAATACAAGGGTG	59.448	45.455	0.00	0.00	40.63	4.61
778	5420	2.668279	CGCTTCAACAATACAAGGGTGC	60.668	50.000	0.00	0.00	0.00	5.01
779	5421	2.352715	GCTTCAACAATACAAGGGTGCC	60.353	50.000	0.00	0.00	0.00	5.01
855	5497	3.245346	TCCATGGGGCACGTGTCA	61.245	61.111	23.45	15.64	34.14	3.58
900	5542	2.281517	CGTACAATCGCCCCATTTACA	58.718	47.619	0.00	0.00	0.00	2.41
901	5543	2.678836	CGTACAATCGCCCCATTTACAA	59.321	45.455	0.00	0.00	0.00	2.41
902	5544	3.314080	CGTACAATCGCCCCATTTACAAT	59.686	43.478	0.00	0.00	0.00	2.71
903	5545	4.553938	CGTACAATCGCCCCATTTACAATC	60.554	45.833	0.00	0.00	0.00	2.67
904	5546	2.357637	ACAATCGCCCCATTTACAATCG	59.642	45.455	0.00	0.00	0.00	3.34
905	5547	2.341846	ATCGCCCCATTTACAATCGT	57.658	45.000	0.00	0.00	0.00	3.73
906	5548	2.116827	TCGCCCCATTTACAATCGTT	57.883	45.000	0.00	0.00	0.00	3.85
907	5549	2.438411	TCGCCCCATTTACAATCGTTT	58.562	42.857	0.00	0.00	0.00	3.60
908	5550	2.820787	TCGCCCCATTTACAATCGTTTT	59.179	40.909	0.00	0.00	0.00	2.43
909	5551	2.920490	CGCCCCATTTACAATCGTTTTG	59.080	45.455	0.36	0.36	0.00	2.44
910	5552	2.670905	GCCCCATTTACAATCGTTTTGC	59.329	45.455	1.61	0.00	0.00	3.68
911	5553	3.616317	GCCCCATTTACAATCGTTTTGCT	60.616	43.478	1.61	0.00	0.00	3.91
912	5554	4.173256	CCCCATTTACAATCGTTTTGCTC	58.827	43.478	1.61	0.00	0.00	4.26
913	5555	4.321601	CCCCATTTACAATCGTTTTGCTCA	60.322	41.667	1.61	0.00	0.00	4.26
914	5556	5.410067	CCCATTTACAATCGTTTTGCTCAT	58.590	37.500	1.61	0.00	0.00	2.90
915	5557	5.868801	CCCATTTACAATCGTTTTGCTCATT	59.131	36.000	1.61	0.00	0.00	2.57
916	5558	7.032580	CCCATTTACAATCGTTTTGCTCATTA	58.967	34.615	1.61	0.00	0.00	1.90
917	5559	7.543868	CCCATTTACAATCGTTTTGCTCATTAA	59.456	33.333	1.61	0.00	0.00	1.40
918	5560	8.920665	CCATTTACAATCGTTTTGCTCATTAAA	58.079	29.630	1.61	0.77	0.00	1.52
922	5564	7.740519	ACAATCGTTTTGCTCATTAAATAGC	57.259	32.000	5.65	5.65	39.25	2.97
923	5565	7.312154	ACAATCGTTTTGCTCATTAAATAGCA	58.688	30.769	10.20	10.20	46.59	3.49
1065	5720	3.299977	CACGTCCTCCCGGTGTCA	61.300	66.667	0.00	0.00	0.00	3.58
1072	5727	1.979155	CTCCCGGTGTCAGAGCTGA	60.979	63.158	0.00	0.00	37.24	4.26
1087	5742	4.373116	TGACGAAGCGCCTCACCC	62.373	66.667	2.29	0.00	0.00	4.61
1095	5750	4.415150	CGCCTCACCCTGCACCAT	62.415	66.667	0.00	0.00	0.00	3.55
1116	5771	1.299620	CTTCACCGTCACCGTCGTT	60.300	57.895	0.00	0.00	0.00	3.85
1288	5943	3.914605	CTGCCACAGCTACGCGACA	62.915	63.158	15.93	0.00	40.80	4.35
1651	6321	4.980805	TGGACGCGTTGGAGCACC	62.981	66.667	15.53	8.80	36.85	5.01
1675	6345	1.166531	GCTGGTGGCGTTCAAAGAGT	61.167	55.000	0.00	0.00	0.00	3.24
1677	6347	1.002468	CTGGTGGCGTTCAAAGAGTTG	60.002	52.381	0.00	0.00	35.95	3.16
1689	6359	3.199946	TCAAAGAGTTGTCTGACAAGGGT	59.800	43.478	22.61	11.01	39.00	4.34
1766	6436	1.005630	ACGAGGTCAAGCACAGCTC	60.006	57.895	0.00	0.00	38.25	4.09
1770	6440	0.250640	AGGTCAAGCACAGCTCCTTG	60.251	55.000	10.55	10.55	38.25	3.61
2218	6898	4.196778	TGGGCTTGGCGTTGTGGA	62.197	61.111	0.00	0.00	0.00	4.02
2623	10168	4.923281	GGAAGCAATTTTACATGTGTGGAC	59.077	41.667	9.11	0.00	0.00	4.02
2703	10296	0.962356	CTTGGGATGCTCGGTTTGCT	60.962	55.000	0.00	0.00	0.00	3.91
2715	10308	2.948979	TCGGTTTGCTTGAGTCAATTGT	59.051	40.909	5.91	0.00	0.00	2.71
2911	10641	2.990479	CTGAGGCCCTAGCGGTTT	59.010	61.111	0.00	0.00	41.24	3.27
2932	10662	9.542462	CGGTTTAGAAAGGTATTGATCTCATTA	57.458	33.333	0.00	0.00	0.00	1.90
3081	10831	4.879197	TTCATCACTGCTTGAGAGAAGA	57.121	40.909	0.00	0.00	37.77	2.87

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	8.435982	TCCACCATGTTTCCTTTTATTTTGATT	58.564	29.630	0.00	0.00	0.00	2.57
4	5	7.610580	TCTCCACCATGTTTCCTTTTATTTT	57.389	32.000	0.00	0.00	0.00	1.82
53	4695	5.387958	CGCCGTTTTTCTTATTTCGCAAAAT	60.388	36.000	0.00	0.00	38.61	1.82
57	4699	2.576406	CGCCGTTTTTCTTATTTCGCA	58.424	42.857	0.00	0.00	0.00	5.10
58	4700	1.316443	GCGCCGTTTTTCTTATTTCGC	59.684	47.619	0.00	0.00	0.00	4.70
59	4701	1.571402	CGCGCCGTTTTTCTTATTTCG	59.429	47.619	0.00	0.00	0.00	3.46
78	4720	0.870307	AGTATAGACGCGCTTTGCCG	60.870	55.000	5.73	0.00	42.08	5.69
108	4750	6.041523	GCCCTCCTAATTTGCCATAAACAATA	59.958	38.462	0.00	0.00	0.00	1.90
159	4801	4.765339	GCAGAACCTTAATTTACACACCCT	59.235	41.667	0.00	0.00	0.00	4.34
160	4802	4.082408	GGCAGAACCTTAATTTACACACCC	60.082	45.833	0.00	0.00	34.51	4.61
297	4939	2.828877	CGGACAACCTTGTAAGTGTCA	58.171	47.619	13.81	0.00	42.43	3.58
300	4942	0.872388	GGCGGACAACCTTGTAAGTG	59.128	55.000	0.00	0.00	42.43	3.16
317	4959	2.508526	AGAGCCAAAATATCCATCGGC	58.491	47.619	0.00	0.00	39.90	5.54
362	5004	6.658188	ACATCCAGCTAGTATAAGGAGTTC	57.342	41.667	0.00	0.00	0.00	3.01
414	5056	6.071952	GGATAACTGCACAAAATGAGAAGGAA	60.072	38.462	0.00	0.00	0.00	3.36
482	5124	8.579863	ACAAGGAAAAAGGATTGAAGATAACTG	58.420	33.333	0.00	0.00	0.00	3.16
537	5179	6.039382	AGGTTGTGGACACTAAAGAATTCAAC	59.961	38.462	8.44	0.00	0.00	3.18
605	5247	4.100498	TGAATAACCTCAGATACCGGAACC	59.900	45.833	9.46	0.00	0.00	3.62
606	5248	5.272283	TGAATAACCTCAGATACCGGAAC	57.728	43.478	9.46	0.00	0.00	3.62
607	5249	5.943349	TTGAATAACCTCAGATACCGGAA	57.057	39.130	9.46	0.00	0.00	4.30
608	5250	5.600898	TCATTGAATAACCTCAGATACCGGA	59.399	40.000	9.46	0.00	0.00	5.14
609	5251	5.853936	TCATTGAATAACCTCAGATACCGG	58.146	41.667	0.00	0.00	0.00	5.28
610	5252	7.154656	TCATCATTGAATAACCTCAGATACCG	58.845	38.462	0.00	0.00	0.00	4.02
611	5253	8.908786	TTCATCATTGAATAACCTCAGATACC	57.091	34.615	0.00	0.00	36.94	2.73
613	5255	9.904198	TGTTTCATCATTGAATAACCTCAGATA	57.096	29.630	0.00	0.00	41.38	1.98
614	5256	8.812513	TGTTTCATCATTGAATAACCTCAGAT	57.187	30.769	0.00	0.00	41.38	2.90
615	5257	8.812513	ATGTTTCATCATTGAATAACCTCAGA	57.187	30.769	0.00	0.00	41.38	3.27
699	5341	6.071784	TGTTCTCCAGTAATGCTAACGAACTA	60.072	38.462	0.00	0.00	32.08	2.24
737	5379	5.460646	AGCGTTTATTGGTCATTTTCACAG	58.539	37.500	0.00	0.00	0.00	3.66
749	5391	6.307800	CCTTGTATTGTTGAAGCGTTTATTGG	59.692	38.462	0.00	0.00	0.00	3.16
890	5532	4.173256	GAGCAAAACGATTGTAAATGGGG	58.827	43.478	0.00	0.00	0.00	4.96
891	5533	4.804108	TGAGCAAAACGATTGTAAATGGG	58.196	39.130	0.00	0.00	0.00	4.00
892	5534	6.949578	AATGAGCAAAACGATTGTAAATGG	57.050	33.333	0.00	0.00	0.00	3.16
896	5538	9.284594	GCTATTTAATGAGCAAAACGATTGTAA	57.715	29.630	0.00	0.00	38.62	2.41
897	5539	8.454894	TGCTATTTAATGAGCAAAACGATTGTA	58.545	29.630	8.87	0.00	45.47	2.41
898	5540	7.312154	TGCTATTTAATGAGCAAAACGATTGT	58.688	30.769	8.87	0.00	45.47	2.71
899	5541	7.739022	TGCTATTTAATGAGCAAAACGATTG	57.261	32.000	8.87	0.00	45.47	2.67
922	5564	3.001067	CAGCGAGCGCATACAGTG	58.999	61.111	17.68	1.42	44.88	3.66
923	5565	2.887568	GCAGCGAGCGCATACAGT	60.888	61.111	17.68	0.00	44.88	3.55
932	5574	1.012234	CGTTTATTCGGCAGCGAGC	60.012	57.895	0.00	0.00	44.65	5.03
933	5575	1.012234	GCGTTTATTCGGCAGCGAG	60.012	57.895	0.00	0.00	0.00	5.03
934	5576	3.086309	GCGTTTATTCGGCAGCGA	58.914	55.556	0.00	0.00	0.00	4.93
935	5577	2.349648	CGCGTTTATTCGGCAGCG	60.350	61.111	0.00	0.00	41.56	5.18
1072	5727	4.379243	CAGGGTGAGGCGCTTCGT	62.379	66.667	15.28	0.00	38.41	3.85
1084	5739	2.036256	GAAGCCATGGTGCAGGGT	59.964	61.111	14.67	0.00	37.65	4.34
1087	5742	2.693762	CGGTGAAGCCATGGTGCAG	61.694	63.158	14.67	0.00	36.97	4.41
1116	5771	0.613853	AGGACAGGCTGGCGTAAGTA	60.614	55.000	15.06	0.00	41.68	2.24
1288	5943	0.763652	TCGAGGAGGGAGCGTAGTAT	59.236	55.000	0.00	0.00	0.00	2.12
1675	6345	2.158871	GGTACACACCCTTGTCAGACAA	60.159	50.000	15.39	15.39	39.11	3.18
1677	6347	2.165319	GGTACACACCCTTGTCAGAC	57.835	55.000	0.00	0.00	39.11	3.51
1770	6440	4.947147	TGGTTGTCCAGCCACCGC	62.947	66.667	0.00	0.00	39.03	5.68
2218	6898	2.177529	TTACCGAGGGGAGGCCTCTT	62.178	60.000	31.36	17.61	32.38	2.85
2398	9921	0.901580	AAGGAAACCATGCCAGCCAG	60.902	55.000	0.00	0.00	0.00	4.85
2596	10141	6.531240	CCACACATGTAAAATTGCTTCCATAC	59.469	38.462	0.00	0.00	0.00	2.39
2623	10168	3.198068	CAACACTACCAATCCCGATCTG	58.802	50.000	0.00	0.00	0.00	2.90
2703	10296	4.142491	ACAAAGCGACAACAATTGACTCAA	60.142	37.500	13.59	0.00	0.00	3.02
2715	10308	5.241949	ACCAAATATACCAACAAAGCGACAA	59.758	36.000	0.00	0.00	0.00	3.18
2776	10369	5.300034	TCCCATCATCATGTAAAGCAACATC	59.700	40.000	0.00	0.00	38.01	3.06
2911	10641	9.547753	GTGCTTAATGAGATCAATACCTTTCTA	57.452	33.333	0.00	0.00	0.00	2.10
2932	10662	4.546829	AATTCATGCATTCCAAGTGCTT	57.453	36.364	0.00	0.00	42.92	3.91
3081	10831	3.598019	AATGATGCGCCACTTGATTTT	57.402	38.095	4.18	0.00	0.00	1.82
3276	11029	9.997172	AATTTTGGATCCTCCTACTTCTTTTAT	57.003	29.630	14.23	0.00	37.46	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.