Multiple sequence alignment - TraesCS7B01G416300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G416300 chr7B 100.000 2813 0 0 1 2813 684459784 684456972 0.000000e+00 5195.0
1 TraesCS7B01G416300 chr7B 85.039 127 12 6 2498 2620 127685109 127684986 3.810000e-24 122.0
2 TraesCS7B01G416300 chr7B 85.246 122 14 3 2501 2620 613233729 613233610 3.810000e-24 122.0
3 TraesCS7B01G416300 chr7B 87.736 106 10 3 2515 2618 733093089 733092985 1.370000e-23 121.0
4 TraesCS7B01G416300 chr7A 94.934 2211 73 7 39 2210 696019473 696017263 0.000000e+00 3426.0
5 TraesCS7B01G416300 chr7A 95.890 146 3 2 2619 2761 696017268 696017123 1.680000e-57 233.0
6 TraesCS7B01G416300 chr7A 86.207 145 10 6 2317 2451 640667242 640667098 6.280000e-32 148.0
7 TraesCS7B01G416300 chr7A 81.560 141 15 9 2481 2618 650590618 650590750 3.830000e-19 106.0
8 TraesCS7B01G416300 chr7A 81.119 143 16 9 2481 2620 650589324 650589458 1.380000e-18 104.0
9 TraesCS7B01G416300 chr7A 94.737 57 3 0 39 95 696019537 696019481 3.860000e-14 89.8
10 TraesCS7B01G416300 chr7D 94.014 1938 86 12 39 1964 603357260 603355341 0.000000e+00 2909.0
11 TraesCS7B01G416300 chr7D 96.457 254 8 1 1957 2210 603355318 603355066 4.330000e-113 418.0
12 TraesCS7B01G416300 chr7D 85.112 403 46 8 1576 1964 603284277 603283875 1.570000e-107 399.0
13 TraesCS7B01G416300 chr7D 88.095 252 27 3 1960 2210 603283853 603283604 2.120000e-76 296.0
14 TraesCS7B01G416300 chr7D 91.237 194 4 11 2619 2810 603355071 603354889 4.650000e-63 252.0
15 TraesCS7B01G416300 chr7D 87.864 206 24 1 1389 1594 603292122 603291918 1.010000e-59 241.0
16 TraesCS7B01G416300 chr7D 76.442 416 72 19 1068 1467 603269242 603268837 4.750000e-48 202.0
17 TraesCS7B01G416300 chr7D 86.559 186 15 7 238 421 603293050 603292873 2.210000e-46 196.0
18 TraesCS7B01G416300 chr7D 93.388 121 7 1 2317 2436 555191828 555191948 8.010000e-41 178.0
19 TraesCS7B01G416300 chr7D 100.000 39 0 0 1 39 603357330 603357292 3.890000e-09 73.1
20 TraesCS7B01G416300 chr5D 88.145 1493 146 20 496 1965 416068137 416066653 0.000000e+00 1748.0
21 TraesCS7B01G416300 chr5D 87.643 437 51 3 44 480 416068643 416068210 3.230000e-139 505.0
22 TraesCS7B01G416300 chr5A 87.058 1499 159 25 496 1969 528559573 528558085 0.000000e+00 1661.0
23 TraesCS7B01G416300 chr5A 88.512 383 43 1 44 426 528560067 528559686 1.970000e-126 462.0
24 TraesCS7B01G416300 chr5B 85.316 538 57 14 1411 1929 502498948 502498414 1.150000e-148 536.0
25 TraesCS7B01G416300 chr5B 80.000 275 38 12 187 460 502499577 502499319 1.330000e-43 187.0
26 TraesCS7B01G416300 chr6B 89.506 162 17 0 2275 2436 54928988 54928827 3.670000e-49 206.0
27 TraesCS7B01G416300 chr6B 86.719 128 13 4 2496 2620 125542107 125541981 3.780000e-29 139.0
28 TraesCS7B01G416300 chr6B 85.246 122 9 6 2500 2619 8455334 8455448 1.770000e-22 117.0
29 TraesCS7B01G416300 chr1B 92.500 120 7 2 2209 2326 666011766 666011647 1.340000e-38 171.0
30 TraesCS7B01G416300 chr1B 91.346 104 7 2 2210 2311 666013491 666013388 1.050000e-29 141.0
31 TraesCS7B01G416300 chr1B 87.619 105 9 3 2500 2603 7188505 7188606 4.920000e-23 119.0
32 TraesCS7B01G416300 chr1B 87.273 55 5 2 534 586 60251279 60251225 8.410000e-06 62.1
33 TraesCS7B01G416300 chr4A 93.103 87 6 0 2239 2325 7163868 7163782 8.180000e-26 128.0
34 TraesCS7B01G416300 chr4B 83.217 143 15 8 2482 2620 387797218 387797355 3.810000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G416300 chr7B 684456972 684459784 2812 True 5195.000 5195 100.0000 1 2813 1 chr7B.!!$R3 2812
1 TraesCS7B01G416300 chr7A 696017123 696019537 2414 True 1249.600 3426 95.1870 39 2761 3 chr7A.!!$R2 2722
2 TraesCS7B01G416300 chr7D 603354889 603357330 2441 True 913.025 2909 95.4270 1 2810 4 chr7D.!!$R4 2809
3 TraesCS7B01G416300 chr7D 603283604 603284277 673 True 347.500 399 86.6035 1576 2210 2 chr7D.!!$R2 634
4 TraesCS7B01G416300 chr7D 603291918 603293050 1132 True 218.500 241 87.2115 238 1594 2 chr7D.!!$R3 1356
5 TraesCS7B01G416300 chr5D 416066653 416068643 1990 True 1126.500 1748 87.8940 44 1965 2 chr5D.!!$R1 1921
6 TraesCS7B01G416300 chr5A 528558085 528560067 1982 True 1061.500 1661 87.7850 44 1969 2 chr5A.!!$R1 1925
7 TraesCS7B01G416300 chr5B 502498414 502499577 1163 True 361.500 536 82.6580 187 1929 2 chr5B.!!$R1 1742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 1007 0.739462 TCGCCATGCTTGTTCTACCG 60.739 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2403 2919 0.030908 GATCCGGCTAGACTTGACCG 59.969 60.0 0.0 10.91 45.21 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 75 4.877378 TGTTATTCCTTCGTGTGTACCT 57.123 40.909 0.00 0.00 0.00 3.08
144 241 2.753966 CCCTTGCAGCCGTCAATCG 61.754 63.158 0.00 0.00 39.52 3.34
251 348 2.754946 TCTGGTTAGGCTTGTTACCG 57.245 50.000 0.00 0.00 33.29 4.02
600 759 5.014228 ACCCCTTAGTGTGCTTATCTTCTTT 59.986 40.000 0.00 0.00 0.00 2.52
760 921 9.326413 AGTATGCACTAATGTAGGTTTGTAATC 57.674 33.333 0.00 0.00 31.45 1.75
843 1007 0.739462 TCGCCATGCTTGTTCTACCG 60.739 55.000 0.00 0.00 0.00 4.02
1470 1925 1.215382 GCTTGGGAAATTGCCGGAC 59.785 57.895 5.05 0.00 0.00 4.79
1474 1929 0.038890 TGGGAAATTGCCGGACATGA 59.961 50.000 5.05 0.00 0.00 3.07
1475 1930 0.455815 GGGAAATTGCCGGACATGAC 59.544 55.000 5.05 0.00 0.00 3.06
1476 1931 1.173043 GGAAATTGCCGGACATGACA 58.827 50.000 5.05 0.00 0.00 3.58
1484 1939 0.324943 CCGGACATGACAAAGGACCT 59.675 55.000 0.00 0.00 0.00 3.85
1485 1940 1.271379 CCGGACATGACAAAGGACCTT 60.271 52.381 0.00 0.00 0.00 3.50
1515 1970 4.100279 TCTCGGTCAGAATAGGCTATCA 57.900 45.455 7.63 0.00 0.00 2.15
1608 2063 6.407320 AGGGGCACATTACCATATGATATT 57.593 37.500 3.65 0.00 0.00 1.28
1701 2156 1.163408 TTGGGGCCCTAAAGAACCTT 58.837 50.000 25.93 0.00 0.00 3.50
1815 2273 7.067372 TCCAATCATTTTGATAGTTGGTAGCAG 59.933 37.037 0.00 0.00 35.76 4.24
2025 2540 3.945285 CCATGTATGTAGGGTTTGTGGAC 59.055 47.826 0.00 0.00 0.00 4.02
2030 2545 0.533308 GTAGGGTTTGTGGACGCACA 60.533 55.000 0.00 0.00 35.17 4.57
2075 2590 7.829706 GTCACCTAGAGGAATTGAATAAAAGGT 59.170 37.037 1.60 0.00 38.94 3.50
2204 2720 0.106918 AACAACGGGGCAAAGTCTCA 60.107 50.000 0.00 0.00 0.00 3.27
2205 2721 0.110486 ACAACGGGGCAAAGTCTCAT 59.890 50.000 0.00 0.00 0.00 2.90
2206 2722 0.804989 CAACGGGGCAAAGTCTCATC 59.195 55.000 0.00 0.00 0.00 2.92
2207 2723 0.322546 AACGGGGCAAAGTCTCATCC 60.323 55.000 0.00 0.00 0.00 3.51
2208 2724 1.299648 CGGGGCAAAGTCTCATCCA 59.700 57.895 0.00 0.00 0.00 3.41
2209 2725 0.107017 CGGGGCAAAGTCTCATCCAT 60.107 55.000 0.00 0.00 0.00 3.41
2210 2726 1.396653 GGGGCAAAGTCTCATCCATG 58.603 55.000 0.00 0.00 0.00 3.66
2211 2727 1.341383 GGGGCAAAGTCTCATCCATGT 60.341 52.381 0.00 0.00 0.00 3.21
2212 2728 2.450476 GGGCAAAGTCTCATCCATGTT 58.550 47.619 0.00 0.00 0.00 2.71
2213 2729 3.620488 GGGCAAAGTCTCATCCATGTTA 58.380 45.455 0.00 0.00 0.00 2.41
2214 2730 3.629398 GGGCAAAGTCTCATCCATGTTAG 59.371 47.826 0.00 0.00 0.00 2.34
2215 2731 4.517285 GGCAAAGTCTCATCCATGTTAGA 58.483 43.478 0.00 0.00 0.00 2.10
2216 2732 4.574013 GGCAAAGTCTCATCCATGTTAGAG 59.426 45.833 0.00 0.00 0.00 2.43
2217 2733 5.181748 GCAAAGTCTCATCCATGTTAGAGT 58.818 41.667 0.00 0.00 0.00 3.24
2218 2734 6.341316 GCAAAGTCTCATCCATGTTAGAGTA 58.659 40.000 0.00 0.00 0.00 2.59
2219 2735 6.818644 GCAAAGTCTCATCCATGTTAGAGTAA 59.181 38.462 0.00 0.00 0.00 2.24
2220 2736 7.497249 GCAAAGTCTCATCCATGTTAGAGTAAT 59.503 37.037 0.00 0.00 0.00 1.89
2221 2737 9.039870 CAAAGTCTCATCCATGTTAGAGTAATC 57.960 37.037 0.00 0.00 0.00 1.75
2222 2738 8.546083 AAGTCTCATCCATGTTAGAGTAATCT 57.454 34.615 0.00 0.00 0.00 2.40
2223 2739 8.546083 AGTCTCATCCATGTTAGAGTAATCTT 57.454 34.615 0.00 0.00 0.00 2.40
2224 2740 8.420222 AGTCTCATCCATGTTAGAGTAATCTTG 58.580 37.037 0.00 0.00 0.00 3.02
2225 2741 8.417106 GTCTCATCCATGTTAGAGTAATCTTGA 58.583 37.037 0.00 0.00 0.00 3.02
2226 2742 9.152327 TCTCATCCATGTTAGAGTAATCTTGAT 57.848 33.333 0.00 0.00 0.00 2.57
2227 2743 9.775854 CTCATCCATGTTAGAGTAATCTTGATT 57.224 33.333 0.00 1.35 0.00 2.57
2244 2760 8.719645 ATCTTGATTAGTAATAGCAGGAGTCT 57.280 34.615 0.00 0.00 0.00 3.24
2245 2761 9.815306 ATCTTGATTAGTAATAGCAGGAGTCTA 57.185 33.333 0.00 0.00 0.00 2.59
2246 2762 9.069082 TCTTGATTAGTAATAGCAGGAGTCTAC 57.931 37.037 0.00 0.00 0.00 2.59
2247 2763 7.436430 TGATTAGTAATAGCAGGAGTCTACG 57.564 40.000 0.00 0.00 0.00 3.51
2248 2764 6.996879 TGATTAGTAATAGCAGGAGTCTACGT 59.003 38.462 0.00 0.00 0.00 3.57
2249 2765 6.615264 TTAGTAATAGCAGGAGTCTACGTG 57.385 41.667 0.00 0.00 0.00 4.49
2250 2766 3.884091 AGTAATAGCAGGAGTCTACGTGG 59.116 47.826 0.00 0.00 0.00 4.94
2251 2767 2.438800 ATAGCAGGAGTCTACGTGGT 57.561 50.000 0.00 0.00 39.19 4.16
2252 2768 1.460504 TAGCAGGAGTCTACGTGGTG 58.539 55.000 0.00 0.00 37.51 4.17
2253 2769 0.539901 AGCAGGAGTCTACGTGGTGT 60.540 55.000 0.00 0.00 35.59 4.16
2254 2770 0.317479 GCAGGAGTCTACGTGGTGTT 59.683 55.000 0.00 0.00 0.00 3.32
2255 2771 1.270147 GCAGGAGTCTACGTGGTGTTT 60.270 52.381 0.00 0.00 0.00 2.83
2256 2772 2.404215 CAGGAGTCTACGTGGTGTTTG 58.596 52.381 0.00 0.00 0.00 2.93
2257 2773 2.035449 CAGGAGTCTACGTGGTGTTTGA 59.965 50.000 0.00 0.00 0.00 2.69
2258 2774 2.897969 AGGAGTCTACGTGGTGTTTGAT 59.102 45.455 0.00 0.00 0.00 2.57
2259 2775 4.082408 CAGGAGTCTACGTGGTGTTTGATA 60.082 45.833 0.00 0.00 0.00 2.15
2260 2776 4.710375 AGGAGTCTACGTGGTGTTTGATAT 59.290 41.667 0.00 0.00 0.00 1.63
2261 2777 5.187186 AGGAGTCTACGTGGTGTTTGATATT 59.813 40.000 0.00 0.00 0.00 1.28
2262 2778 5.291128 GGAGTCTACGTGGTGTTTGATATTG 59.709 44.000 0.00 0.00 0.00 1.90
2263 2779 5.790593 AGTCTACGTGGTGTTTGATATTGT 58.209 37.500 0.00 0.00 0.00 2.71
2264 2780 6.228258 AGTCTACGTGGTGTTTGATATTGTT 58.772 36.000 0.00 0.00 0.00 2.83
2265 2781 6.708949 AGTCTACGTGGTGTTTGATATTGTTT 59.291 34.615 0.00 0.00 0.00 2.83
2266 2782 6.795114 GTCTACGTGGTGTTTGATATTGTTTG 59.205 38.462 0.00 0.00 0.00 2.93
2267 2783 5.759506 ACGTGGTGTTTGATATTGTTTGA 57.240 34.783 0.00 0.00 0.00 2.69
2268 2784 5.757886 ACGTGGTGTTTGATATTGTTTGAG 58.242 37.500 0.00 0.00 0.00 3.02
2269 2785 4.616802 CGTGGTGTTTGATATTGTTTGAGC 59.383 41.667 0.00 0.00 0.00 4.26
2270 2786 5.562696 CGTGGTGTTTGATATTGTTTGAGCT 60.563 40.000 0.00 0.00 0.00 4.09
2271 2787 6.348132 CGTGGTGTTTGATATTGTTTGAGCTA 60.348 38.462 0.00 0.00 0.00 3.32
2272 2788 7.023575 GTGGTGTTTGATATTGTTTGAGCTAG 58.976 38.462 0.00 0.00 0.00 3.42
2273 2789 6.030228 GGTGTTTGATATTGTTTGAGCTAGC 58.970 40.000 6.62 6.62 0.00 3.42
2274 2790 6.127897 GGTGTTTGATATTGTTTGAGCTAGCT 60.128 38.462 19.45 19.45 0.00 3.32
2275 2791 6.963805 GTGTTTGATATTGTTTGAGCTAGCTC 59.036 38.462 33.47 33.47 43.01 4.09
2276 2792 6.881065 TGTTTGATATTGTTTGAGCTAGCTCT 59.119 34.615 37.42 22.79 43.12 4.09
2277 2793 8.040727 TGTTTGATATTGTTTGAGCTAGCTCTA 58.959 33.333 37.42 30.46 43.12 2.43
2278 2794 8.331742 GTTTGATATTGTTTGAGCTAGCTCTAC 58.668 37.037 37.42 32.49 43.12 2.59
2279 2795 6.209361 TGATATTGTTTGAGCTAGCTCTACG 58.791 40.000 37.42 0.00 43.12 3.51
2280 2796 3.936372 TTGTTTGAGCTAGCTCTACGT 57.064 42.857 37.42 9.01 43.12 3.57
2281 2797 3.217599 TGTTTGAGCTAGCTCTACGTG 57.782 47.619 37.42 0.00 43.12 4.49
2282 2798 2.557056 TGTTTGAGCTAGCTCTACGTGT 59.443 45.455 37.42 7.44 43.12 4.49
2283 2799 3.005472 TGTTTGAGCTAGCTCTACGTGTT 59.995 43.478 37.42 6.66 43.12 3.32
2284 2800 2.921634 TGAGCTAGCTCTACGTGTTG 57.078 50.000 37.42 0.00 43.12 3.33
2285 2801 2.160205 TGAGCTAGCTCTACGTGTTGT 58.840 47.619 37.42 5.33 43.12 3.32
2286 2802 3.340928 TGAGCTAGCTCTACGTGTTGTA 58.659 45.455 37.42 16.47 43.12 2.41
2297 2813 3.671008 ACGTGTTGTAGTAGCATTGGA 57.329 42.857 0.00 0.00 0.00 3.53
2298 2814 3.585862 ACGTGTTGTAGTAGCATTGGAG 58.414 45.455 0.00 0.00 0.00 3.86
2299 2815 3.006537 ACGTGTTGTAGTAGCATTGGAGT 59.993 43.478 0.00 0.00 0.00 3.85
2300 2816 3.994392 CGTGTTGTAGTAGCATTGGAGTT 59.006 43.478 0.00 0.00 0.00 3.01
2301 2817 4.143115 CGTGTTGTAGTAGCATTGGAGTTG 60.143 45.833 0.00 0.00 0.00 3.16
2302 2818 4.154195 GTGTTGTAGTAGCATTGGAGTTGG 59.846 45.833 0.00 0.00 0.00 3.77
2303 2819 2.985896 TGTAGTAGCATTGGAGTTGGC 58.014 47.619 0.00 0.00 0.00 4.52
2304 2820 2.571653 TGTAGTAGCATTGGAGTTGGCT 59.428 45.455 0.00 0.00 40.26 4.75
2305 2821 3.772572 TGTAGTAGCATTGGAGTTGGCTA 59.227 43.478 0.00 0.00 37.79 3.93
2306 2822 4.408921 TGTAGTAGCATTGGAGTTGGCTAT 59.591 41.667 0.00 0.00 40.57 2.97
2307 2823 5.600898 TGTAGTAGCATTGGAGTTGGCTATA 59.399 40.000 0.00 0.00 40.57 1.31
2308 2824 5.832539 AGTAGCATTGGAGTTGGCTATAT 57.167 39.130 0.00 0.00 40.57 0.86
2309 2825 5.555017 AGTAGCATTGGAGTTGGCTATATG 58.445 41.667 0.00 0.00 40.57 1.78
2310 2826 4.443978 AGCATTGGAGTTGGCTATATGT 57.556 40.909 0.00 0.00 34.25 2.29
2311 2827 4.139786 AGCATTGGAGTTGGCTATATGTG 58.860 43.478 0.00 0.00 34.25 3.21
2312 2828 3.885297 GCATTGGAGTTGGCTATATGTGT 59.115 43.478 0.00 0.00 0.00 3.72
2313 2829 4.023707 GCATTGGAGTTGGCTATATGTGTC 60.024 45.833 0.00 0.00 0.00 3.67
2314 2830 3.838244 TGGAGTTGGCTATATGTGTCC 57.162 47.619 0.00 0.00 0.00 4.02
2315 2831 2.102420 TGGAGTTGGCTATATGTGTCCG 59.898 50.000 0.00 0.00 0.00 4.79
2316 2832 2.548067 GGAGTTGGCTATATGTGTCCGG 60.548 54.545 0.00 0.00 0.00 5.14
2317 2833 1.202651 AGTTGGCTATATGTGTCCGGC 60.203 52.381 0.00 0.00 0.00 6.13
2318 2834 1.128200 TTGGCTATATGTGTCCGGCT 58.872 50.000 0.00 0.00 0.00 5.52
2319 2835 1.128200 TGGCTATATGTGTCCGGCTT 58.872 50.000 0.00 0.00 0.00 4.35
2320 2836 2.321719 TGGCTATATGTGTCCGGCTTA 58.678 47.619 0.00 0.00 0.00 3.09
2321 2837 2.299013 TGGCTATATGTGTCCGGCTTAG 59.701 50.000 0.00 0.00 0.00 2.18
2322 2838 2.353803 GGCTATATGTGTCCGGCTTAGG 60.354 54.545 0.00 0.00 0.00 2.69
2323 2839 2.299297 GCTATATGTGTCCGGCTTAGGT 59.701 50.000 0.00 0.00 0.00 3.08
2324 2840 3.244112 GCTATATGTGTCCGGCTTAGGTT 60.244 47.826 0.00 0.00 0.00 3.50
2325 2841 3.926058 ATATGTGTCCGGCTTAGGTTT 57.074 42.857 0.00 0.00 0.00 3.27
2326 2842 1.821216 ATGTGTCCGGCTTAGGTTTG 58.179 50.000 0.00 0.00 0.00 2.93
2327 2843 0.887387 TGTGTCCGGCTTAGGTTTGC 60.887 55.000 0.00 0.00 0.00 3.68
2328 2844 1.302993 TGTCCGGCTTAGGTTTGCC 60.303 57.895 0.00 0.00 45.25 4.52
2329 2845 1.002502 GTCCGGCTTAGGTTTGCCT 60.003 57.895 0.00 0.00 46.42 4.75
2330 2846 0.251073 GTCCGGCTTAGGTTTGCCTA 59.749 55.000 0.00 0.00 44.90 3.93
2343 2859 1.737838 TTGCCTAGCAATCAAGGTCG 58.262 50.000 0.00 0.00 43.99 4.79
2344 2860 0.107703 TGCCTAGCAATCAAGGTCGG 60.108 55.000 0.00 0.00 34.76 4.79
2345 2861 1.440145 GCCTAGCAATCAAGGTCGGC 61.440 60.000 0.00 0.00 40.01 5.54
2346 2862 1.154205 CCTAGCAATCAAGGTCGGCG 61.154 60.000 0.00 0.00 0.00 6.46
2347 2863 1.153449 TAGCAATCAAGGTCGGCGG 60.153 57.895 7.21 0.00 0.00 6.13
2348 2864 2.587322 TAGCAATCAAGGTCGGCGGG 62.587 60.000 7.21 0.00 0.00 6.13
2349 2865 2.046314 CAATCAAGGTCGGCGGGT 60.046 61.111 7.21 0.00 0.00 5.28
2350 2866 2.046314 AATCAAGGTCGGCGGGTG 60.046 61.111 7.21 0.02 0.00 4.61
2351 2867 2.589157 AATCAAGGTCGGCGGGTGA 61.589 57.895 7.21 6.12 0.00 4.02
2352 2868 1.910580 AATCAAGGTCGGCGGGTGAT 61.911 55.000 7.21 8.28 0.00 3.06
2353 2869 1.910580 ATCAAGGTCGGCGGGTGATT 61.911 55.000 7.21 0.00 0.00 2.57
2354 2870 1.219664 CAAGGTCGGCGGGTGATTA 59.780 57.895 7.21 0.00 0.00 1.75
2355 2871 0.391927 CAAGGTCGGCGGGTGATTAA 60.392 55.000 7.21 0.00 0.00 1.40
2356 2872 0.544697 AAGGTCGGCGGGTGATTAAT 59.455 50.000 7.21 0.00 0.00 1.40
2357 2873 0.544697 AGGTCGGCGGGTGATTAATT 59.455 50.000 7.21 0.00 0.00 1.40
2358 2874 1.064979 AGGTCGGCGGGTGATTAATTT 60.065 47.619 7.21 0.00 0.00 1.82
2359 2875 2.171027 AGGTCGGCGGGTGATTAATTTA 59.829 45.455 7.21 0.00 0.00 1.40
2360 2876 2.546789 GGTCGGCGGGTGATTAATTTAG 59.453 50.000 7.21 0.00 0.00 1.85
2361 2877 2.546789 GTCGGCGGGTGATTAATTTAGG 59.453 50.000 7.21 0.00 0.00 2.69
2362 2878 2.435069 TCGGCGGGTGATTAATTTAGGA 59.565 45.455 7.21 0.00 0.00 2.94
2363 2879 3.118334 TCGGCGGGTGATTAATTTAGGAA 60.118 43.478 7.21 0.00 0.00 3.36
2364 2880 3.250040 CGGCGGGTGATTAATTTAGGAAG 59.750 47.826 0.00 0.00 0.00 3.46
2365 2881 4.204799 GGCGGGTGATTAATTTAGGAAGT 58.795 43.478 0.00 0.00 0.00 3.01
2366 2882 5.370679 GGCGGGTGATTAATTTAGGAAGTA 58.629 41.667 0.00 0.00 0.00 2.24
2367 2883 5.237996 GGCGGGTGATTAATTTAGGAAGTAC 59.762 44.000 0.00 0.00 0.00 2.73
2368 2884 6.053650 GCGGGTGATTAATTTAGGAAGTACT 58.946 40.000 0.00 0.00 0.00 2.73
2369 2885 6.202379 GCGGGTGATTAATTTAGGAAGTACTC 59.798 42.308 0.00 0.00 0.00 2.59
2370 2886 6.420008 CGGGTGATTAATTTAGGAAGTACTCG 59.580 42.308 0.00 0.00 0.00 4.18
2371 2887 7.270779 GGGTGATTAATTTAGGAAGTACTCGT 58.729 38.462 0.00 0.00 0.00 4.18
2372 2888 7.224167 GGGTGATTAATTTAGGAAGTACTCGTG 59.776 40.741 0.00 0.00 0.00 4.35
2373 2889 7.763071 GGTGATTAATTTAGGAAGTACTCGTGT 59.237 37.037 0.00 0.00 0.00 4.49
2374 2890 8.805688 GTGATTAATTTAGGAAGTACTCGTGTC 58.194 37.037 0.00 0.00 0.00 3.67
2375 2891 7.977853 TGATTAATTTAGGAAGTACTCGTGTCC 59.022 37.037 0.00 0.00 0.00 4.02
2376 2892 3.837213 TTTAGGAAGTACTCGTGTCCG 57.163 47.619 0.00 0.00 35.19 4.79
2377 2893 2.768253 TAGGAAGTACTCGTGTCCGA 57.232 50.000 0.00 0.00 41.73 4.55
2388 2904 3.531934 TCGTGTCCGAGTCTAGTATGA 57.468 47.619 0.00 0.00 38.40 2.15
2389 2905 3.455327 TCGTGTCCGAGTCTAGTATGAG 58.545 50.000 0.00 0.00 38.40 2.90
2390 2906 3.118847 TCGTGTCCGAGTCTAGTATGAGT 60.119 47.826 0.00 0.00 38.40 3.41
2391 2907 3.245754 CGTGTCCGAGTCTAGTATGAGTC 59.754 52.174 0.00 0.00 35.63 3.36
2392 2908 3.560896 GTGTCCGAGTCTAGTATGAGTCC 59.439 52.174 0.00 0.00 33.97 3.85
2393 2909 3.199289 TGTCCGAGTCTAGTATGAGTCCA 59.801 47.826 0.00 0.00 33.97 4.02
2394 2910 4.141459 TGTCCGAGTCTAGTATGAGTCCAT 60.141 45.833 0.00 0.00 33.97 3.41
2395 2911 5.071384 TGTCCGAGTCTAGTATGAGTCCATA 59.929 44.000 0.00 0.00 33.97 2.74
2396 2912 5.640357 GTCCGAGTCTAGTATGAGTCCATAG 59.360 48.000 0.00 0.00 36.04 2.23
2397 2913 4.393680 CCGAGTCTAGTATGAGTCCATAGC 59.606 50.000 0.00 0.00 36.04 2.97
2398 2914 4.998033 CGAGTCTAGTATGAGTCCATAGCA 59.002 45.833 0.00 0.00 36.04 3.49
2399 2915 5.121611 CGAGTCTAGTATGAGTCCATAGCAG 59.878 48.000 0.00 0.00 36.04 4.24
2400 2916 5.321102 AGTCTAGTATGAGTCCATAGCAGG 58.679 45.833 0.00 0.00 36.04 4.85
2401 2917 4.461081 GTCTAGTATGAGTCCATAGCAGGG 59.539 50.000 0.00 0.00 36.04 4.45
2402 2918 3.336509 AGTATGAGTCCATAGCAGGGT 57.663 47.619 0.00 0.00 36.04 4.34
2403 2919 3.235200 AGTATGAGTCCATAGCAGGGTC 58.765 50.000 0.00 0.00 36.04 4.46
2404 2920 1.043816 ATGAGTCCATAGCAGGGTCG 58.956 55.000 0.00 0.00 0.00 4.79
2405 2921 1.043116 TGAGTCCATAGCAGGGTCGG 61.043 60.000 0.00 0.00 0.00 4.79
2406 2922 1.001760 AGTCCATAGCAGGGTCGGT 59.998 57.895 0.00 0.00 0.00 4.69
2407 2923 1.043673 AGTCCATAGCAGGGTCGGTC 61.044 60.000 0.00 0.00 0.00 4.79
2408 2924 1.001120 TCCATAGCAGGGTCGGTCA 59.999 57.895 0.00 0.00 0.00 4.02
2409 2925 0.616395 TCCATAGCAGGGTCGGTCAA 60.616 55.000 0.00 0.00 0.00 3.18
2410 2926 0.179073 CCATAGCAGGGTCGGTCAAG 60.179 60.000 0.00 0.00 0.00 3.02
2411 2927 0.537188 CATAGCAGGGTCGGTCAAGT 59.463 55.000 0.00 0.00 0.00 3.16
2412 2928 0.824759 ATAGCAGGGTCGGTCAAGTC 59.175 55.000 0.00 0.00 0.00 3.01
2413 2929 0.251653 TAGCAGGGTCGGTCAAGTCT 60.252 55.000 0.00 0.00 0.00 3.24
2414 2930 0.251653 AGCAGGGTCGGTCAAGTCTA 60.252 55.000 0.00 0.00 0.00 2.59
2415 2931 0.173708 GCAGGGTCGGTCAAGTCTAG 59.826 60.000 0.00 0.00 0.00 2.43
2416 2932 0.173708 CAGGGTCGGTCAAGTCTAGC 59.826 60.000 0.00 0.00 0.00 3.42
2417 2933 0.971447 AGGGTCGGTCAAGTCTAGCC 60.971 60.000 0.00 0.00 0.00 3.93
2418 2934 1.139095 GGTCGGTCAAGTCTAGCCG 59.861 63.158 0.00 0.00 44.95 5.52
2419 2935 1.139095 GTCGGTCAAGTCTAGCCGG 59.861 63.158 0.00 0.00 43.87 6.13
2420 2936 1.001764 TCGGTCAAGTCTAGCCGGA 60.002 57.895 5.05 0.00 43.87 5.14
2421 2937 0.395311 TCGGTCAAGTCTAGCCGGAT 60.395 55.000 5.05 0.00 43.87 4.18
2422 2938 0.030908 CGGTCAAGTCTAGCCGGATC 59.969 60.000 5.05 0.00 40.45 3.36
2423 2939 0.030908 GGTCAAGTCTAGCCGGATCG 59.969 60.000 5.05 0.00 0.00 3.69
2424 2940 0.739561 GTCAAGTCTAGCCGGATCGT 59.260 55.000 5.05 0.00 0.00 3.73
2425 2941 0.738975 TCAAGTCTAGCCGGATCGTG 59.261 55.000 5.05 0.00 0.00 4.35
2426 2942 0.456221 CAAGTCTAGCCGGATCGTGT 59.544 55.000 5.05 0.00 0.00 4.49
2427 2943 1.674441 CAAGTCTAGCCGGATCGTGTA 59.326 52.381 5.05 0.00 0.00 2.90
2428 2944 2.273538 AGTCTAGCCGGATCGTGTAT 57.726 50.000 5.05 0.00 0.00 2.29
2429 2945 3.413846 AGTCTAGCCGGATCGTGTATA 57.586 47.619 5.05 0.00 0.00 1.47
2430 2946 3.952931 AGTCTAGCCGGATCGTGTATAT 58.047 45.455 5.05 0.00 0.00 0.86
2431 2947 5.095145 AGTCTAGCCGGATCGTGTATATA 57.905 43.478 5.05 0.00 0.00 0.86
2432 2948 5.682659 AGTCTAGCCGGATCGTGTATATAT 58.317 41.667 5.05 0.00 0.00 0.86
2433 2949 6.824553 AGTCTAGCCGGATCGTGTATATATA 58.175 40.000 5.05 0.00 0.00 0.86
2434 2950 7.451732 AGTCTAGCCGGATCGTGTATATATAT 58.548 38.462 5.05 0.00 0.00 0.86
2435 2951 8.591940 AGTCTAGCCGGATCGTGTATATATATA 58.408 37.037 5.05 0.00 0.00 0.86
2436 2952 8.655092 GTCTAGCCGGATCGTGTATATATATAC 58.345 40.741 21.34 21.34 39.14 1.47
2437 2953 8.370182 TCTAGCCGGATCGTGTATATATATACA 58.630 37.037 25.25 25.25 44.42 2.29
2458 2974 4.157607 CCTGCGTGAGGGTTTTGT 57.842 55.556 0.00 0.00 38.36 2.83
2459 2975 3.315765 CCTGCGTGAGGGTTTTGTA 57.684 52.632 0.00 0.00 38.36 2.41
2460 2976 1.600023 CCTGCGTGAGGGTTTTGTAA 58.400 50.000 0.00 0.00 38.36 2.41
2461 2977 2.159382 CCTGCGTGAGGGTTTTGTAAT 58.841 47.619 0.00 0.00 38.36 1.89
2462 2978 3.340034 CCTGCGTGAGGGTTTTGTAATA 58.660 45.455 0.00 0.00 38.36 0.98
2463 2979 3.126343 CCTGCGTGAGGGTTTTGTAATAC 59.874 47.826 0.00 0.00 38.36 1.89
2464 2980 3.075884 TGCGTGAGGGTTTTGTAATACC 58.924 45.455 0.00 0.00 0.00 2.73
2465 2981 2.094734 GCGTGAGGGTTTTGTAATACCG 59.905 50.000 0.00 0.00 35.19 4.02
2466 2982 3.328505 CGTGAGGGTTTTGTAATACCGT 58.671 45.455 0.19 0.19 35.19 4.83
2467 2983 3.123959 CGTGAGGGTTTTGTAATACCGTG 59.876 47.826 4.56 0.00 35.19 4.94
2468 2984 4.317488 GTGAGGGTTTTGTAATACCGTGA 58.683 43.478 4.56 0.00 35.19 4.35
2469 2985 4.756135 GTGAGGGTTTTGTAATACCGTGAA 59.244 41.667 4.56 0.00 35.19 3.18
2470 2986 5.413523 GTGAGGGTTTTGTAATACCGTGAAT 59.586 40.000 4.56 0.00 35.19 2.57
2471 2987 5.413213 TGAGGGTTTTGTAATACCGTGAATG 59.587 40.000 4.56 0.00 35.19 2.67
2472 2988 5.318630 AGGGTTTTGTAATACCGTGAATGT 58.681 37.500 0.00 0.00 35.19 2.71
2473 2989 5.771165 AGGGTTTTGTAATACCGTGAATGTT 59.229 36.000 0.00 0.00 35.19 2.71
2474 2990 6.941436 AGGGTTTTGTAATACCGTGAATGTTA 59.059 34.615 0.00 0.00 35.19 2.41
2475 2991 7.120138 AGGGTTTTGTAATACCGTGAATGTTAG 59.880 37.037 0.00 0.00 35.19 2.34
2476 2992 7.245604 GGTTTTGTAATACCGTGAATGTTAGG 58.754 38.462 0.00 0.00 0.00 2.69
2477 2993 6.988622 TTTGTAATACCGTGAATGTTAGGG 57.011 37.500 0.00 0.00 0.00 3.53
2478 2994 5.680594 TGTAATACCGTGAATGTTAGGGT 57.319 39.130 0.00 0.00 39.43 4.34
2479 2995 6.052405 TGTAATACCGTGAATGTTAGGGTT 57.948 37.500 0.00 0.00 37.48 4.11
2480 2996 6.474630 TGTAATACCGTGAATGTTAGGGTTT 58.525 36.000 0.00 0.00 37.48 3.27
2481 2997 6.941436 TGTAATACCGTGAATGTTAGGGTTTT 59.059 34.615 0.00 0.00 37.48 2.43
2482 2998 5.890424 ATACCGTGAATGTTAGGGTTTTG 57.110 39.130 0.00 0.00 37.48 2.44
2483 2999 3.558033 ACCGTGAATGTTAGGGTTTTGT 58.442 40.909 0.00 0.00 32.77 2.83
2484 3000 4.716794 ACCGTGAATGTTAGGGTTTTGTA 58.283 39.130 0.00 0.00 32.77 2.41
2485 3001 5.131784 ACCGTGAATGTTAGGGTTTTGTAA 58.868 37.500 0.00 0.00 32.77 2.41
2486 3002 5.771165 ACCGTGAATGTTAGGGTTTTGTAAT 59.229 36.000 0.00 0.00 32.77 1.89
2487 3003 6.941436 ACCGTGAATGTTAGGGTTTTGTAATA 59.059 34.615 0.00 0.00 32.77 0.98
2488 3004 7.094677 ACCGTGAATGTTAGGGTTTTGTAATAC 60.095 37.037 0.00 0.00 32.77 1.89
2489 3005 7.245604 CGTGAATGTTAGGGTTTTGTAATACC 58.754 38.462 0.00 0.00 0.00 2.73
2490 3006 7.245604 GTGAATGTTAGGGTTTTGTAATACCG 58.754 38.462 0.00 0.00 35.19 4.02
2491 3007 7.119553 GTGAATGTTAGGGTTTTGTAATACCGA 59.880 37.037 0.00 0.00 35.19 4.69
2492 3008 7.334921 TGAATGTTAGGGTTTTGTAATACCGAG 59.665 37.037 0.00 0.00 35.19 4.63
2493 3009 5.490159 TGTTAGGGTTTTGTAATACCGAGG 58.510 41.667 0.00 0.00 35.19 4.63
2494 3010 5.012975 TGTTAGGGTTTTGTAATACCGAGGT 59.987 40.000 0.00 0.00 35.19 3.85
2495 3011 3.946606 AGGGTTTTGTAATACCGAGGTG 58.053 45.455 4.80 0.00 35.19 4.00
2496 3012 3.011818 GGGTTTTGTAATACCGAGGTGG 58.988 50.000 4.80 0.00 46.41 4.61
2497 3013 3.011818 GGTTTTGTAATACCGAGGTGGG 58.988 50.000 4.80 0.00 44.64 4.61
2498 3014 2.406596 TTTGTAATACCGAGGTGGGC 57.593 50.000 4.80 0.00 44.64 5.36
2499 3015 1.277579 TTGTAATACCGAGGTGGGCA 58.722 50.000 4.80 0.00 44.64 5.36
2500 3016 1.277579 TGTAATACCGAGGTGGGCAA 58.722 50.000 4.80 0.00 44.64 4.52
2501 3017 1.629353 TGTAATACCGAGGTGGGCAAA 59.371 47.619 4.80 0.00 44.64 3.68
2502 3018 2.040012 TGTAATACCGAGGTGGGCAAAA 59.960 45.455 4.80 0.00 44.64 2.44
2503 3019 1.834188 AATACCGAGGTGGGCAAAAG 58.166 50.000 4.80 0.00 44.64 2.27
2504 3020 0.988832 ATACCGAGGTGGGCAAAAGA 59.011 50.000 4.80 0.00 44.64 2.52
2505 3021 0.766131 TACCGAGGTGGGCAAAAGAA 59.234 50.000 4.80 0.00 44.64 2.52
2506 3022 0.537371 ACCGAGGTGGGCAAAAGAAG 60.537 55.000 0.00 0.00 44.64 2.85
2507 3023 0.250727 CCGAGGTGGGCAAAAGAAGA 60.251 55.000 0.00 0.00 0.00 2.87
2508 3024 1.160137 CGAGGTGGGCAAAAGAAGAG 58.840 55.000 0.00 0.00 0.00 2.85
2509 3025 1.270839 CGAGGTGGGCAAAAGAAGAGA 60.271 52.381 0.00 0.00 0.00 3.10
2510 3026 2.810400 CGAGGTGGGCAAAAGAAGAGAA 60.810 50.000 0.00 0.00 0.00 2.87
2511 3027 2.816672 GAGGTGGGCAAAAGAAGAGAAG 59.183 50.000 0.00 0.00 0.00 2.85
2512 3028 2.443255 AGGTGGGCAAAAGAAGAGAAGA 59.557 45.455 0.00 0.00 0.00 2.87
2513 3029 3.075134 AGGTGGGCAAAAGAAGAGAAGAT 59.925 43.478 0.00 0.00 0.00 2.40
2514 3030 4.289672 AGGTGGGCAAAAGAAGAGAAGATA 59.710 41.667 0.00 0.00 0.00 1.98
2515 3031 5.010282 GGTGGGCAAAAGAAGAGAAGATAA 58.990 41.667 0.00 0.00 0.00 1.75
2516 3032 5.476945 GGTGGGCAAAAGAAGAGAAGATAAA 59.523 40.000 0.00 0.00 0.00 1.40
2517 3033 6.015434 GGTGGGCAAAAGAAGAGAAGATAAAA 60.015 38.462 0.00 0.00 0.00 1.52
2518 3034 7.087007 GTGGGCAAAAGAAGAGAAGATAAAAG 58.913 38.462 0.00 0.00 0.00 2.27
2519 3035 7.004086 TGGGCAAAAGAAGAGAAGATAAAAGA 58.996 34.615 0.00 0.00 0.00 2.52
2520 3036 7.175641 TGGGCAAAAGAAGAGAAGATAAAAGAG 59.824 37.037 0.00 0.00 0.00 2.85
2521 3037 7.391833 GGGCAAAAGAAGAGAAGATAAAAGAGA 59.608 37.037 0.00 0.00 0.00 3.10
2522 3038 8.450180 GGCAAAAGAAGAGAAGATAAAAGAGAG 58.550 37.037 0.00 0.00 0.00 3.20
2523 3039 9.213799 GCAAAAGAAGAGAAGATAAAAGAGAGA 57.786 33.333 0.00 0.00 0.00 3.10
2533 3049 9.008965 AGAAGATAAAAGAGAGAAAAGAAAGGC 57.991 33.333 0.00 0.00 0.00 4.35
2534 3050 8.697507 AAGATAAAAGAGAGAAAAGAAAGGCA 57.302 30.769 0.00 0.00 0.00 4.75
2535 3051 8.105097 AGATAAAAGAGAGAAAAGAAAGGCAC 57.895 34.615 0.00 0.00 0.00 5.01
2536 3052 4.820284 AAAGAGAGAAAAGAAAGGCACG 57.180 40.909 0.00 0.00 0.00 5.34
2537 3053 3.753294 AGAGAGAAAAGAAAGGCACGA 57.247 42.857 0.00 0.00 0.00 4.35
2538 3054 3.394719 AGAGAGAAAAGAAAGGCACGAC 58.605 45.455 0.00 0.00 0.00 4.34
2539 3055 3.131396 GAGAGAAAAGAAAGGCACGACA 58.869 45.455 0.00 0.00 0.00 4.35
2540 3056 2.872858 AGAGAAAAGAAAGGCACGACAC 59.127 45.455 0.00 0.00 0.00 3.67
2541 3057 1.597663 AGAAAAGAAAGGCACGACACG 59.402 47.619 0.00 0.00 0.00 4.49
2542 3058 1.329599 GAAAAGAAAGGCACGACACGT 59.670 47.619 0.00 0.00 42.36 4.49
2552 3068 3.725485 ACGACACGTGTCTTTGACA 57.275 47.368 37.63 0.00 42.66 3.58
2553 3069 1.999048 ACGACACGTGTCTTTGACAA 58.001 45.000 37.63 0.00 44.49 3.18
2554 3070 2.339418 ACGACACGTGTCTTTGACAAA 58.661 42.857 37.63 0.00 44.49 2.83
2555 3071 2.737783 ACGACACGTGTCTTTGACAAAA 59.262 40.909 37.63 0.00 44.49 2.44
2556 3072 3.186817 ACGACACGTGTCTTTGACAAAAA 59.813 39.130 37.63 0.00 44.49 1.94
2577 3093 6.851222 AAAAATTTTGTGTGTGTGTGTTCA 57.149 29.167 3.73 0.00 0.00 3.18
2578 3094 7.432350 AAAAATTTTGTGTGTGTGTGTTCAT 57.568 28.000 3.73 0.00 0.00 2.57
2579 3095 6.645700 AAATTTTGTGTGTGTGTGTTCATC 57.354 33.333 0.00 0.00 0.00 2.92
2580 3096 3.397405 TTTGTGTGTGTGTGTTCATCG 57.603 42.857 0.00 0.00 0.00 3.84
2581 3097 2.017138 TGTGTGTGTGTGTTCATCGT 57.983 45.000 0.00 0.00 0.00 3.73
2582 3098 1.663135 TGTGTGTGTGTGTTCATCGTG 59.337 47.619 0.00 0.00 0.00 4.35
2583 3099 1.930503 GTGTGTGTGTGTTCATCGTGA 59.069 47.619 0.00 0.00 0.00 4.35
2584 3100 2.543848 GTGTGTGTGTGTTCATCGTGAT 59.456 45.455 0.00 0.00 0.00 3.06
2585 3101 3.002246 GTGTGTGTGTGTTCATCGTGATT 59.998 43.478 0.00 0.00 0.00 2.57
2586 3102 3.625313 TGTGTGTGTGTTCATCGTGATTT 59.375 39.130 0.00 0.00 0.00 2.17
2587 3103 3.968096 GTGTGTGTGTTCATCGTGATTTG 59.032 43.478 0.00 0.00 0.00 2.32
2588 3104 3.873952 TGTGTGTGTTCATCGTGATTTGA 59.126 39.130 0.00 0.00 0.00 2.69
2589 3105 4.514816 TGTGTGTGTTCATCGTGATTTGAT 59.485 37.500 0.00 0.00 0.00 2.57
2590 3106 4.847757 GTGTGTGTTCATCGTGATTTGATG 59.152 41.667 0.00 0.00 43.62 3.07
2591 3107 4.514816 TGTGTGTTCATCGTGATTTGATGT 59.485 37.500 3.21 0.00 42.96 3.06
2592 3108 4.847757 GTGTGTTCATCGTGATTTGATGTG 59.152 41.667 3.21 0.00 42.96 3.21
2593 3109 4.754114 TGTGTTCATCGTGATTTGATGTGA 59.246 37.500 3.21 0.00 42.96 3.58
2594 3110 5.412286 TGTGTTCATCGTGATTTGATGTGAT 59.588 36.000 3.21 0.00 42.96 3.06
2595 3111 5.961843 GTGTTCATCGTGATTTGATGTGATC 59.038 40.000 3.21 0.00 42.96 2.92
2596 3112 5.193216 GTTCATCGTGATTTGATGTGATCG 58.807 41.667 3.21 0.00 42.96 3.69
2597 3113 4.681744 TCATCGTGATTTGATGTGATCGA 58.318 39.130 3.21 0.00 42.96 3.59
2598 3114 5.291971 TCATCGTGATTTGATGTGATCGAT 58.708 37.500 0.00 0.00 42.96 3.59
2599 3115 5.403466 TCATCGTGATTTGATGTGATCGATC 59.597 40.000 18.72 18.72 42.96 3.69
2600 3116 4.051237 TCGTGATTTGATGTGATCGATCC 58.949 43.478 22.31 13.85 0.00 3.36
2601 3117 4.053983 CGTGATTTGATGTGATCGATCCT 58.946 43.478 22.31 7.41 0.00 3.24
2602 3118 4.084693 CGTGATTTGATGTGATCGATCCTG 60.085 45.833 22.31 0.00 0.00 3.86
2603 3119 3.811497 TGATTTGATGTGATCGATCCTGC 59.189 43.478 22.31 12.80 0.00 4.85
2604 3120 1.856802 TTGATGTGATCGATCCTGCG 58.143 50.000 22.31 0.00 0.00 5.18
2605 3121 0.746659 TGATGTGATCGATCCTGCGT 59.253 50.000 22.31 13.35 0.00 5.24
2606 3122 1.135046 GATGTGATCGATCCTGCGTG 58.865 55.000 22.31 0.00 0.00 5.34
2607 3123 0.746659 ATGTGATCGATCCTGCGTGA 59.253 50.000 22.31 0.00 0.00 4.35
2608 3124 0.530288 TGTGATCGATCCTGCGTGAA 59.470 50.000 22.31 0.00 0.00 3.18
2609 3125 1.067213 TGTGATCGATCCTGCGTGAAA 60.067 47.619 22.31 0.00 0.00 2.69
2610 3126 2.205074 GTGATCGATCCTGCGTGAAAT 58.795 47.619 22.31 0.00 0.00 2.17
2611 3127 2.609459 GTGATCGATCCTGCGTGAAATT 59.391 45.455 22.31 0.00 0.00 1.82
2612 3128 2.866156 TGATCGATCCTGCGTGAAATTC 59.134 45.455 22.31 0.00 0.00 2.17
2613 3129 1.651987 TCGATCCTGCGTGAAATTCC 58.348 50.000 0.00 0.00 0.00 3.01
2614 3130 1.066502 TCGATCCTGCGTGAAATTCCA 60.067 47.619 0.00 0.00 0.00 3.53
2615 3131 1.737236 CGATCCTGCGTGAAATTCCAA 59.263 47.619 0.00 0.00 0.00 3.53
2616 3132 2.476185 CGATCCTGCGTGAAATTCCAAC 60.476 50.000 0.00 0.00 0.00 3.77
2617 3133 1.974265 TCCTGCGTGAAATTCCAACA 58.026 45.000 0.00 0.00 0.00 3.33
2635 3151 0.817013 CAATCCATTGGTGAACCCGG 59.183 55.000 1.86 0.00 35.15 5.73
2666 3184 2.435805 TCCAACAGCAAGACAGAGAAGT 59.564 45.455 0.00 0.00 0.00 3.01
2804 3323 4.546829 AGCGACACCTCCTGTATTTTAA 57.453 40.909 0.00 0.00 31.03 1.52
2805 3324 5.099042 AGCGACACCTCCTGTATTTTAAT 57.901 39.130 0.00 0.00 31.03 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 241 5.016051 TCACCAGCAGAAGATATGAAGAC 57.984 43.478 0.00 0.00 0.00 3.01
504 663 7.544622 GGGAAAACACCTATTTATGGACTTTC 58.455 38.462 0.00 0.00 0.00 2.62
600 759 8.518430 AACATGTTTGTATTATATGCTCACCA 57.482 30.769 4.92 0.00 34.06 4.17
652 812 4.651503 TGCAAGGGTAAAAATGGAAAGTGA 59.348 37.500 0.00 0.00 0.00 3.41
696 857 7.129457 TCAGTAACTTCCAATGCAGATAGAT 57.871 36.000 0.00 0.00 0.00 1.98
705 866 8.283291 GTCACTTTTACTCAGTAACTTCCAATG 58.717 37.037 0.00 0.00 0.00 2.82
760 921 6.424509 TGCATTTTCAACATAAGCTCCAAAAG 59.575 34.615 0.00 0.00 0.00 2.27
843 1007 4.157840 CCATAAAACAACCCTAAGAGCACC 59.842 45.833 0.00 0.00 0.00 5.01
1038 1351 4.376717 GCAAGGTTTACTACTGTAACACGC 60.377 45.833 0.00 0.00 38.26 5.34
1118 1545 7.181125 AGAGATTGTTGGATAGTGTAAGTTCCT 59.819 37.037 0.00 0.00 0.00 3.36
1484 1939 0.878523 CTGACCGAGAAACACCGCAA 60.879 55.000 0.00 0.00 0.00 4.85
1485 1940 1.300620 CTGACCGAGAAACACCGCA 60.301 57.895 0.00 0.00 0.00 5.69
1515 1970 3.073062 ACAATGTTGCTGGAACTCTACCT 59.927 43.478 13.23 0.00 35.37 3.08
1608 2063 1.954382 AGCGCGACAGATAGATTACCA 59.046 47.619 12.10 0.00 0.00 3.25
1701 2156 7.741785 TGTTTCCTCCAAGATCTAAAACTGTA 58.258 34.615 0.00 0.00 0.00 2.74
1815 2273 6.310467 TGAATAAGTCATTAGCAGTGTCGTTC 59.690 38.462 0.00 0.00 0.00 3.95
2025 2540 3.829886 AATACAAATGAGGTGTGTGCG 57.170 42.857 0.00 0.00 0.00 5.34
2030 2545 5.473504 GGTGACAGAAATACAAATGAGGTGT 59.526 40.000 0.00 0.00 0.00 4.16
2218 2734 9.153479 AGACTCCTGCTATTACTAATCAAGATT 57.847 33.333 0.52 0.52 34.93 2.40
2219 2735 8.719645 AGACTCCTGCTATTACTAATCAAGAT 57.280 34.615 0.00 0.00 0.00 2.40
2220 2736 9.069082 GTAGACTCCTGCTATTACTAATCAAGA 57.931 37.037 0.00 0.00 0.00 3.02
2221 2737 8.018520 CGTAGACTCCTGCTATTACTAATCAAG 58.981 40.741 0.00 0.00 0.00 3.02
2222 2738 7.501559 ACGTAGACTCCTGCTATTACTAATCAA 59.498 37.037 0.00 0.00 0.00 2.57
2223 2739 6.996879 ACGTAGACTCCTGCTATTACTAATCA 59.003 38.462 0.00 0.00 0.00 2.57
2224 2740 7.299586 CACGTAGACTCCTGCTATTACTAATC 58.700 42.308 0.00 0.00 0.00 1.75
2225 2741 6.207025 CCACGTAGACTCCTGCTATTACTAAT 59.793 42.308 0.00 0.00 0.00 1.73
2226 2742 5.530171 CCACGTAGACTCCTGCTATTACTAA 59.470 44.000 0.00 0.00 0.00 2.24
2227 2743 5.061853 CCACGTAGACTCCTGCTATTACTA 58.938 45.833 0.00 0.00 0.00 1.82
2228 2744 3.884091 CCACGTAGACTCCTGCTATTACT 59.116 47.826 0.00 0.00 0.00 2.24
2229 2745 3.631227 ACCACGTAGACTCCTGCTATTAC 59.369 47.826 0.00 0.00 0.00 1.89
2230 2746 3.630769 CACCACGTAGACTCCTGCTATTA 59.369 47.826 0.00 0.00 0.00 0.98
2231 2747 2.427453 CACCACGTAGACTCCTGCTATT 59.573 50.000 0.00 0.00 0.00 1.73
2232 2748 2.025155 CACCACGTAGACTCCTGCTAT 58.975 52.381 0.00 0.00 0.00 2.97
2233 2749 1.271762 ACACCACGTAGACTCCTGCTA 60.272 52.381 0.00 0.00 0.00 3.49
2234 2750 0.539901 ACACCACGTAGACTCCTGCT 60.540 55.000 0.00 0.00 0.00 4.24
2235 2751 0.317479 AACACCACGTAGACTCCTGC 59.683 55.000 0.00 0.00 0.00 4.85
2236 2752 2.035449 TCAAACACCACGTAGACTCCTG 59.965 50.000 0.00 0.00 0.00 3.86
2237 2753 2.313317 TCAAACACCACGTAGACTCCT 58.687 47.619 0.00 0.00 0.00 3.69
2238 2754 2.806608 TCAAACACCACGTAGACTCC 57.193 50.000 0.00 0.00 0.00 3.85
2239 2755 5.867716 ACAATATCAAACACCACGTAGACTC 59.132 40.000 0.00 0.00 0.00 3.36
2240 2756 5.790593 ACAATATCAAACACCACGTAGACT 58.209 37.500 0.00 0.00 0.00 3.24
2241 2757 6.476243 AACAATATCAAACACCACGTAGAC 57.524 37.500 0.00 0.00 0.00 2.59
2242 2758 6.706716 TCAAACAATATCAAACACCACGTAGA 59.293 34.615 0.00 0.00 0.00 2.59
2243 2759 6.893759 TCAAACAATATCAAACACCACGTAG 58.106 36.000 0.00 0.00 0.00 3.51
2244 2760 6.566942 GCTCAAACAATATCAAACACCACGTA 60.567 38.462 0.00 0.00 0.00 3.57
2245 2761 5.757886 CTCAAACAATATCAAACACCACGT 58.242 37.500 0.00 0.00 0.00 4.49
2246 2762 4.616802 GCTCAAACAATATCAAACACCACG 59.383 41.667 0.00 0.00 0.00 4.94
2247 2763 5.772521 AGCTCAAACAATATCAAACACCAC 58.227 37.500 0.00 0.00 0.00 4.16
2248 2764 6.349280 GCTAGCTCAAACAATATCAAACACCA 60.349 38.462 7.70 0.00 0.00 4.17
2249 2765 6.030228 GCTAGCTCAAACAATATCAAACACC 58.970 40.000 7.70 0.00 0.00 4.16
2250 2766 6.846350 AGCTAGCTCAAACAATATCAAACAC 58.154 36.000 12.68 0.00 0.00 3.32
2251 2767 6.881065 AGAGCTAGCTCAAACAATATCAAACA 59.119 34.615 38.86 0.00 44.99 2.83
2252 2768 7.313951 AGAGCTAGCTCAAACAATATCAAAC 57.686 36.000 38.86 13.23 44.99 2.93
2253 2769 7.222805 CGTAGAGCTAGCTCAAACAATATCAAA 59.777 37.037 38.86 6.18 44.99 2.69
2254 2770 6.697455 CGTAGAGCTAGCTCAAACAATATCAA 59.303 38.462 38.86 11.96 44.99 2.57
2255 2771 6.183360 ACGTAGAGCTAGCTCAAACAATATCA 60.183 38.462 38.86 13.04 44.99 2.15
2256 2772 6.143118 CACGTAGAGCTAGCTCAAACAATATC 59.857 42.308 38.86 19.20 44.99 1.63
2257 2773 5.980116 CACGTAGAGCTAGCTCAAACAATAT 59.020 40.000 38.86 22.11 44.99 1.28
2258 2774 5.105877 ACACGTAGAGCTAGCTCAAACAATA 60.106 40.000 38.86 22.45 44.99 1.90
2259 2775 4.177026 CACGTAGAGCTAGCTCAAACAAT 58.823 43.478 38.86 24.84 44.99 2.71
2260 2776 3.005472 ACACGTAGAGCTAGCTCAAACAA 59.995 43.478 38.86 19.89 44.99 2.83
2261 2777 2.557056 ACACGTAGAGCTAGCTCAAACA 59.443 45.455 38.86 21.82 44.99 2.83
2262 2778 3.219052 ACACGTAGAGCTAGCTCAAAC 57.781 47.619 38.86 32.70 44.99 2.93
2263 2779 3.005472 ACAACACGTAGAGCTAGCTCAAA 59.995 43.478 38.86 26.62 44.99 2.69
2264 2780 2.557056 ACAACACGTAGAGCTAGCTCAA 59.443 45.455 38.86 0.00 44.99 3.02
2265 2781 2.160205 ACAACACGTAGAGCTAGCTCA 58.840 47.619 38.86 24.99 44.99 4.26
2266 2782 2.923605 ACAACACGTAGAGCTAGCTC 57.076 50.000 33.21 33.21 43.03 4.09
2276 2792 4.219070 ACTCCAATGCTACTACAACACGTA 59.781 41.667 0.00 0.00 0.00 3.57
2277 2793 3.006537 ACTCCAATGCTACTACAACACGT 59.993 43.478 0.00 0.00 0.00 4.49
2278 2794 3.585862 ACTCCAATGCTACTACAACACG 58.414 45.455 0.00 0.00 0.00 4.49
2279 2795 4.154195 CCAACTCCAATGCTACTACAACAC 59.846 45.833 0.00 0.00 0.00 3.32
2280 2796 4.323417 CCAACTCCAATGCTACTACAACA 58.677 43.478 0.00 0.00 0.00 3.33
2281 2797 3.127030 GCCAACTCCAATGCTACTACAAC 59.873 47.826 0.00 0.00 0.00 3.32
2282 2798 3.009033 AGCCAACTCCAATGCTACTACAA 59.991 43.478 0.00 0.00 30.97 2.41
2283 2799 2.571653 AGCCAACTCCAATGCTACTACA 59.428 45.455 0.00 0.00 30.97 2.74
2284 2800 3.268023 AGCCAACTCCAATGCTACTAC 57.732 47.619 0.00 0.00 30.97 2.73
2285 2801 6.270000 ACATATAGCCAACTCCAATGCTACTA 59.730 38.462 0.00 0.00 38.97 1.82
2286 2802 5.072329 ACATATAGCCAACTCCAATGCTACT 59.928 40.000 0.00 0.00 38.97 2.57
2287 2803 5.180117 CACATATAGCCAACTCCAATGCTAC 59.820 44.000 0.00 0.00 38.97 3.58
2288 2804 5.163205 ACACATATAGCCAACTCCAATGCTA 60.163 40.000 0.00 0.00 40.30 3.49
2289 2805 4.139786 CACATATAGCCAACTCCAATGCT 58.860 43.478 0.00 0.00 37.84 3.79
2290 2806 3.885297 ACACATATAGCCAACTCCAATGC 59.115 43.478 0.00 0.00 0.00 3.56
2291 2807 4.516698 GGACACATATAGCCAACTCCAATG 59.483 45.833 0.00 0.00 0.00 2.82
2292 2808 4.718961 GGACACATATAGCCAACTCCAAT 58.281 43.478 0.00 0.00 0.00 3.16
2293 2809 3.431626 CGGACACATATAGCCAACTCCAA 60.432 47.826 0.00 0.00 0.00 3.53
2294 2810 2.102420 CGGACACATATAGCCAACTCCA 59.898 50.000 0.00 0.00 0.00 3.86
2295 2811 2.548067 CCGGACACATATAGCCAACTCC 60.548 54.545 0.00 0.00 0.00 3.85
2296 2812 2.755650 CCGGACACATATAGCCAACTC 58.244 52.381 0.00 0.00 0.00 3.01
2297 2813 1.202651 GCCGGACACATATAGCCAACT 60.203 52.381 5.05 0.00 0.00 3.16
2298 2814 1.202651 AGCCGGACACATATAGCCAAC 60.203 52.381 5.05 0.00 0.00 3.77
2299 2815 1.128200 AGCCGGACACATATAGCCAA 58.872 50.000 5.05 0.00 0.00 4.52
2300 2816 1.128200 AAGCCGGACACATATAGCCA 58.872 50.000 5.05 0.00 0.00 4.75
2301 2817 2.353803 CCTAAGCCGGACACATATAGCC 60.354 54.545 5.05 0.00 0.00 3.93
2302 2818 2.299297 ACCTAAGCCGGACACATATAGC 59.701 50.000 5.05 0.00 0.00 2.97
2303 2819 4.602340 AACCTAAGCCGGACACATATAG 57.398 45.455 5.05 0.00 0.00 1.31
2304 2820 4.699637 CAAACCTAAGCCGGACACATATA 58.300 43.478 5.05 0.00 0.00 0.86
2305 2821 3.541632 CAAACCTAAGCCGGACACATAT 58.458 45.455 5.05 0.00 0.00 1.78
2306 2822 2.937873 GCAAACCTAAGCCGGACACATA 60.938 50.000 5.05 0.00 0.00 2.29
2307 2823 1.821216 CAAACCTAAGCCGGACACAT 58.179 50.000 5.05 0.00 0.00 3.21
2308 2824 0.887387 GCAAACCTAAGCCGGACACA 60.887 55.000 5.05 0.00 0.00 3.72
2309 2825 1.583495 GGCAAACCTAAGCCGGACAC 61.583 60.000 5.05 0.00 41.70 3.67
2310 2826 1.302993 GGCAAACCTAAGCCGGACA 60.303 57.895 5.05 0.00 41.70 4.02
2311 2827 3.587095 GGCAAACCTAAGCCGGAC 58.413 61.111 5.05 0.00 41.70 4.79
2325 2841 0.107703 CCGACCTTGATTGCTAGGCA 60.108 55.000 0.00 0.00 40.20 4.75
2326 2842 1.440145 GCCGACCTTGATTGCTAGGC 61.440 60.000 0.00 0.00 40.20 3.93
2327 2843 1.154205 CGCCGACCTTGATTGCTAGG 61.154 60.000 0.00 0.00 41.97 3.02
2328 2844 1.154205 CCGCCGACCTTGATTGCTAG 61.154 60.000 0.00 0.00 0.00 3.42
2329 2845 1.153449 CCGCCGACCTTGATTGCTA 60.153 57.895 0.00 0.00 0.00 3.49
2330 2846 2.436646 CCGCCGACCTTGATTGCT 60.437 61.111 0.00 0.00 0.00 3.91
2331 2847 3.508840 CCCGCCGACCTTGATTGC 61.509 66.667 0.00 0.00 0.00 3.56
2332 2848 2.046314 ACCCGCCGACCTTGATTG 60.046 61.111 0.00 0.00 0.00 2.67
2333 2849 1.910580 ATCACCCGCCGACCTTGATT 61.911 55.000 0.00 0.00 0.00 2.57
2334 2850 1.910580 AATCACCCGCCGACCTTGAT 61.911 55.000 0.00 0.00 0.00 2.57
2335 2851 1.259142 TAATCACCCGCCGACCTTGA 61.259 55.000 0.00 0.00 0.00 3.02
2336 2852 0.391927 TTAATCACCCGCCGACCTTG 60.392 55.000 0.00 0.00 0.00 3.61
2337 2853 0.544697 ATTAATCACCCGCCGACCTT 59.455 50.000 0.00 0.00 0.00 3.50
2338 2854 0.544697 AATTAATCACCCGCCGACCT 59.455 50.000 0.00 0.00 0.00 3.85
2339 2855 1.385528 AAATTAATCACCCGCCGACC 58.614 50.000 0.00 0.00 0.00 4.79
2340 2856 2.546789 CCTAAATTAATCACCCGCCGAC 59.453 50.000 0.00 0.00 0.00 4.79
2341 2857 2.435069 TCCTAAATTAATCACCCGCCGA 59.565 45.455 0.00 0.00 0.00 5.54
2342 2858 2.841215 TCCTAAATTAATCACCCGCCG 58.159 47.619 0.00 0.00 0.00 6.46
2343 2859 4.204799 ACTTCCTAAATTAATCACCCGCC 58.795 43.478 0.00 0.00 0.00 6.13
2344 2860 6.053650 AGTACTTCCTAAATTAATCACCCGC 58.946 40.000 0.00 0.00 0.00 6.13
2345 2861 6.420008 CGAGTACTTCCTAAATTAATCACCCG 59.580 42.308 0.00 0.00 0.00 5.28
2346 2862 7.224167 CACGAGTACTTCCTAAATTAATCACCC 59.776 40.741 0.00 0.00 0.00 4.61
2347 2863 7.763071 ACACGAGTACTTCCTAAATTAATCACC 59.237 37.037 0.00 0.00 0.00 4.02
2348 2864 8.699283 ACACGAGTACTTCCTAAATTAATCAC 57.301 34.615 0.00 0.00 0.00 3.06
2349 2865 7.977853 GGACACGAGTACTTCCTAAATTAATCA 59.022 37.037 0.00 0.00 0.00 2.57
2350 2866 7.167136 CGGACACGAGTACTTCCTAAATTAATC 59.833 40.741 9.19 0.00 44.60 1.75
2351 2867 6.976925 CGGACACGAGTACTTCCTAAATTAAT 59.023 38.462 9.19 0.00 44.60 1.40
2352 2868 6.150976 TCGGACACGAGTACTTCCTAAATTAA 59.849 38.462 9.19 0.00 45.59 1.40
2353 2869 5.647658 TCGGACACGAGTACTTCCTAAATTA 59.352 40.000 9.19 0.00 45.59 1.40
2354 2870 4.460382 TCGGACACGAGTACTTCCTAAATT 59.540 41.667 9.19 0.00 45.59 1.82
2355 2871 4.012374 TCGGACACGAGTACTTCCTAAAT 58.988 43.478 9.19 0.00 45.59 1.40
2356 2872 3.411446 TCGGACACGAGTACTTCCTAAA 58.589 45.455 9.19 0.00 45.59 1.85
2357 2873 3.057969 TCGGACACGAGTACTTCCTAA 57.942 47.619 9.19 0.00 45.59 2.69
2358 2874 2.768253 TCGGACACGAGTACTTCCTA 57.232 50.000 9.19 0.00 45.59 2.94
2359 2875 3.639099 TCGGACACGAGTACTTCCT 57.361 52.632 9.19 0.00 45.59 3.36
2369 2885 3.196463 ACTCATACTAGACTCGGACACG 58.804 50.000 0.00 0.00 42.74 4.49
2370 2886 3.560896 GGACTCATACTAGACTCGGACAC 59.439 52.174 0.00 0.00 0.00 3.67
2371 2887 3.199289 TGGACTCATACTAGACTCGGACA 59.801 47.826 0.00 0.00 0.00 4.02
2372 2888 3.806380 TGGACTCATACTAGACTCGGAC 58.194 50.000 0.00 0.00 0.00 4.79
2373 2889 4.708576 ATGGACTCATACTAGACTCGGA 57.291 45.455 0.00 0.00 0.00 4.55
2374 2890 4.393680 GCTATGGACTCATACTAGACTCGG 59.606 50.000 0.00 0.00 34.96 4.63
2375 2891 4.998033 TGCTATGGACTCATACTAGACTCG 59.002 45.833 0.00 0.00 34.96 4.18
2376 2892 5.414454 CCTGCTATGGACTCATACTAGACTC 59.586 48.000 0.00 0.00 34.96 3.36
2377 2893 5.321102 CCTGCTATGGACTCATACTAGACT 58.679 45.833 0.00 0.00 34.96 3.24
2378 2894 4.461081 CCCTGCTATGGACTCATACTAGAC 59.539 50.000 0.00 0.00 34.96 2.59
2379 2895 4.106502 ACCCTGCTATGGACTCATACTAGA 59.893 45.833 0.00 0.00 34.96 2.43
2380 2896 4.411927 ACCCTGCTATGGACTCATACTAG 58.588 47.826 0.00 0.00 34.96 2.57
2381 2897 4.408276 GACCCTGCTATGGACTCATACTA 58.592 47.826 0.00 0.00 34.96 1.82
2382 2898 3.235200 GACCCTGCTATGGACTCATACT 58.765 50.000 0.00 0.00 34.96 2.12
2383 2899 2.029828 CGACCCTGCTATGGACTCATAC 60.030 54.545 0.00 0.00 34.96 2.39
2384 2900 2.239400 CGACCCTGCTATGGACTCATA 58.761 52.381 0.00 0.00 34.96 2.15
2385 2901 1.043816 CGACCCTGCTATGGACTCAT 58.956 55.000 0.00 0.00 37.40 2.90
2386 2902 1.043116 CCGACCCTGCTATGGACTCA 61.043 60.000 0.00 0.00 0.00 3.41
2387 2903 1.043673 ACCGACCCTGCTATGGACTC 61.044 60.000 0.00 0.00 0.00 3.36
2388 2904 1.001760 ACCGACCCTGCTATGGACT 59.998 57.895 0.00 0.00 0.00 3.85
2389 2905 1.327690 TGACCGACCCTGCTATGGAC 61.328 60.000 0.00 0.00 0.00 4.02
2390 2906 0.616395 TTGACCGACCCTGCTATGGA 60.616 55.000 0.00 0.00 0.00 3.41
2391 2907 0.179073 CTTGACCGACCCTGCTATGG 60.179 60.000 0.00 0.00 0.00 2.74
2392 2908 0.537188 ACTTGACCGACCCTGCTATG 59.463 55.000 0.00 0.00 0.00 2.23
2393 2909 0.824759 GACTTGACCGACCCTGCTAT 59.175 55.000 0.00 0.00 0.00 2.97
2394 2910 0.251653 AGACTTGACCGACCCTGCTA 60.252 55.000 0.00 0.00 0.00 3.49
2395 2911 0.251653 TAGACTTGACCGACCCTGCT 60.252 55.000 0.00 0.00 0.00 4.24
2396 2912 0.173708 CTAGACTTGACCGACCCTGC 59.826 60.000 0.00 0.00 0.00 4.85
2397 2913 0.173708 GCTAGACTTGACCGACCCTG 59.826 60.000 0.00 0.00 0.00 4.45
2398 2914 0.971447 GGCTAGACTTGACCGACCCT 60.971 60.000 0.00 0.00 0.00 4.34
2399 2915 1.516423 GGCTAGACTTGACCGACCC 59.484 63.158 0.00 0.00 0.00 4.46
2403 2919 0.030908 GATCCGGCTAGACTTGACCG 59.969 60.000 0.00 10.91 45.21 4.79
2404 2920 0.030908 CGATCCGGCTAGACTTGACC 59.969 60.000 0.00 0.00 0.00 4.02
2405 2921 0.739561 ACGATCCGGCTAGACTTGAC 59.260 55.000 0.00 0.00 0.00 3.18
2406 2922 0.738975 CACGATCCGGCTAGACTTGA 59.261 55.000 0.00 0.00 0.00 3.02
2407 2923 0.456221 ACACGATCCGGCTAGACTTG 59.544 55.000 0.00 0.00 0.00 3.16
2408 2924 2.048444 TACACGATCCGGCTAGACTT 57.952 50.000 0.00 0.00 0.00 3.01
2409 2925 2.273538 ATACACGATCCGGCTAGACT 57.726 50.000 0.00 0.00 0.00 3.24
2410 2926 7.670009 ATATATATACACGATCCGGCTAGAC 57.330 40.000 0.00 0.00 0.00 2.59
2411 2927 8.370182 TGTATATATATACACGATCCGGCTAGA 58.630 37.037 25.25 4.23 42.47 2.43
2412 2928 8.543862 TGTATATATATACACGATCCGGCTAG 57.456 38.462 25.25 0.00 42.47 3.42
2438 2954 1.597027 AAAACCCTCACGCAGGTCG 60.597 57.895 0.53 0.00 41.51 4.79
2439 2955 0.818040 ACAAAACCCTCACGCAGGTC 60.818 55.000 0.53 0.00 41.51 3.85
2440 2956 0.470766 TACAAAACCCTCACGCAGGT 59.529 50.000 0.53 0.00 41.51 4.00
2441 2957 1.600023 TTACAAAACCCTCACGCAGG 58.400 50.000 0.00 0.00 43.01 4.85
2442 2958 3.126343 GGTATTACAAAACCCTCACGCAG 59.874 47.826 0.00 0.00 0.00 5.18
2443 2959 3.075884 GGTATTACAAAACCCTCACGCA 58.924 45.455 0.00 0.00 0.00 5.24
2444 2960 2.094734 CGGTATTACAAAACCCTCACGC 59.905 50.000 0.00 0.00 31.68 5.34
2445 2961 3.123959 CACGGTATTACAAAACCCTCACG 59.876 47.826 0.00 0.00 31.68 4.35
2446 2962 4.317488 TCACGGTATTACAAAACCCTCAC 58.683 43.478 0.00 0.00 31.68 3.51
2447 2963 4.620589 TCACGGTATTACAAAACCCTCA 57.379 40.909 0.00 0.00 31.68 3.86
2448 2964 5.413523 ACATTCACGGTATTACAAAACCCTC 59.586 40.000 0.00 0.00 31.68 4.30
2449 2965 5.318630 ACATTCACGGTATTACAAAACCCT 58.681 37.500 0.00 0.00 31.68 4.34
2450 2966 5.632244 ACATTCACGGTATTACAAAACCC 57.368 39.130 0.00 0.00 31.68 4.11
2451 2967 7.245604 CCTAACATTCACGGTATTACAAAACC 58.754 38.462 0.00 0.00 0.00 3.27
2452 2968 7.094677 ACCCTAACATTCACGGTATTACAAAAC 60.095 37.037 0.00 0.00 0.00 2.43
2453 2969 6.941436 ACCCTAACATTCACGGTATTACAAAA 59.059 34.615 0.00 0.00 0.00 2.44
2454 2970 6.474630 ACCCTAACATTCACGGTATTACAAA 58.525 36.000 0.00 0.00 0.00 2.83
2455 2971 6.052405 ACCCTAACATTCACGGTATTACAA 57.948 37.500 0.00 0.00 0.00 2.41
2456 2972 5.680594 ACCCTAACATTCACGGTATTACA 57.319 39.130 0.00 0.00 0.00 2.41
2457 2973 6.990341 AAACCCTAACATTCACGGTATTAC 57.010 37.500 0.00 0.00 0.00 1.89
2458 2974 6.941436 ACAAAACCCTAACATTCACGGTATTA 59.059 34.615 0.00 0.00 0.00 0.98
2459 2975 5.771165 ACAAAACCCTAACATTCACGGTATT 59.229 36.000 0.00 0.00 0.00 1.89
2460 2976 5.318630 ACAAAACCCTAACATTCACGGTAT 58.681 37.500 0.00 0.00 0.00 2.73
2461 2977 4.716794 ACAAAACCCTAACATTCACGGTA 58.283 39.130 0.00 0.00 0.00 4.02
2462 2978 3.558033 ACAAAACCCTAACATTCACGGT 58.442 40.909 0.00 0.00 0.00 4.83
2463 2979 5.692613 TTACAAAACCCTAACATTCACGG 57.307 39.130 0.00 0.00 0.00 4.94
2464 2980 7.245604 GGTATTACAAAACCCTAACATTCACG 58.754 38.462 0.00 0.00 0.00 4.35
2465 2981 7.119553 TCGGTATTACAAAACCCTAACATTCAC 59.880 37.037 0.00 0.00 31.68 3.18
2466 2982 7.166851 TCGGTATTACAAAACCCTAACATTCA 58.833 34.615 0.00 0.00 31.68 2.57
2467 2983 7.201670 CCTCGGTATTACAAAACCCTAACATTC 60.202 40.741 0.00 0.00 31.68 2.67
2468 2984 6.600427 CCTCGGTATTACAAAACCCTAACATT 59.400 38.462 0.00 0.00 31.68 2.71
2469 2985 6.117488 CCTCGGTATTACAAAACCCTAACAT 58.883 40.000 0.00 0.00 31.68 2.71
2470 2986 5.012975 ACCTCGGTATTACAAAACCCTAACA 59.987 40.000 0.00 0.00 31.68 2.41
2471 2987 5.352293 CACCTCGGTATTACAAAACCCTAAC 59.648 44.000 0.00 0.00 31.68 2.34
2472 2988 5.490159 CACCTCGGTATTACAAAACCCTAA 58.510 41.667 0.00 0.00 31.68 2.69
2473 2989 4.080975 CCACCTCGGTATTACAAAACCCTA 60.081 45.833 0.00 0.00 31.68 3.53
2474 2990 3.307904 CCACCTCGGTATTACAAAACCCT 60.308 47.826 0.00 0.00 31.68 4.34
2475 2991 3.011818 CCACCTCGGTATTACAAAACCC 58.988 50.000 0.00 0.00 31.68 4.11
2476 2992 3.011818 CCCACCTCGGTATTACAAAACC 58.988 50.000 0.00 0.00 0.00 3.27
2477 2993 2.421073 GCCCACCTCGGTATTACAAAAC 59.579 50.000 0.00 0.00 0.00 2.43
2478 2994 2.040012 TGCCCACCTCGGTATTACAAAA 59.960 45.455 0.00 0.00 0.00 2.44
2479 2995 1.629353 TGCCCACCTCGGTATTACAAA 59.371 47.619 0.00 0.00 0.00 2.83
2480 2996 1.277579 TGCCCACCTCGGTATTACAA 58.722 50.000 0.00 0.00 0.00 2.41
2481 2997 1.277579 TTGCCCACCTCGGTATTACA 58.722 50.000 0.00 0.00 0.00 2.41
2482 2998 2.406596 TTTGCCCACCTCGGTATTAC 57.593 50.000 0.00 0.00 0.00 1.89
2483 2999 2.572556 TCTTTTGCCCACCTCGGTATTA 59.427 45.455 0.00 0.00 0.00 0.98
2484 3000 1.353022 TCTTTTGCCCACCTCGGTATT 59.647 47.619 0.00 0.00 0.00 1.89
2485 3001 0.988832 TCTTTTGCCCACCTCGGTAT 59.011 50.000 0.00 0.00 0.00 2.73
2486 3002 0.766131 TTCTTTTGCCCACCTCGGTA 59.234 50.000 0.00 0.00 0.00 4.02
2487 3003 0.537371 CTTCTTTTGCCCACCTCGGT 60.537 55.000 0.00 0.00 0.00 4.69
2488 3004 0.250727 TCTTCTTTTGCCCACCTCGG 60.251 55.000 0.00 0.00 0.00 4.63
2489 3005 1.160137 CTCTTCTTTTGCCCACCTCG 58.840 55.000 0.00 0.00 0.00 4.63
2490 3006 2.568623 TCTCTTCTTTTGCCCACCTC 57.431 50.000 0.00 0.00 0.00 3.85
2491 3007 2.443255 TCTTCTCTTCTTTTGCCCACCT 59.557 45.455 0.00 0.00 0.00 4.00
2492 3008 2.863809 TCTTCTCTTCTTTTGCCCACC 58.136 47.619 0.00 0.00 0.00 4.61
2493 3009 6.575162 TTTATCTTCTCTTCTTTTGCCCAC 57.425 37.500 0.00 0.00 0.00 4.61
2494 3010 7.004086 TCTTTTATCTTCTCTTCTTTTGCCCA 58.996 34.615 0.00 0.00 0.00 5.36
2495 3011 7.391833 TCTCTTTTATCTTCTCTTCTTTTGCCC 59.608 37.037 0.00 0.00 0.00 5.36
2496 3012 8.329203 TCTCTTTTATCTTCTCTTCTTTTGCC 57.671 34.615 0.00 0.00 0.00 4.52
2497 3013 9.213799 TCTCTCTTTTATCTTCTCTTCTTTTGC 57.786 33.333 0.00 0.00 0.00 3.68
2507 3023 9.008965 GCCTTTCTTTTCTCTCTTTTATCTTCT 57.991 33.333 0.00 0.00 0.00 2.85
2508 3024 8.787852 TGCCTTTCTTTTCTCTCTTTTATCTTC 58.212 33.333 0.00 0.00 0.00 2.87
2509 3025 8.572185 GTGCCTTTCTTTTCTCTCTTTTATCTT 58.428 33.333 0.00 0.00 0.00 2.40
2510 3026 7.095017 CGTGCCTTTCTTTTCTCTCTTTTATCT 60.095 37.037 0.00 0.00 0.00 1.98
2511 3027 7.018235 CGTGCCTTTCTTTTCTCTCTTTTATC 58.982 38.462 0.00 0.00 0.00 1.75
2512 3028 6.710744 TCGTGCCTTTCTTTTCTCTCTTTTAT 59.289 34.615 0.00 0.00 0.00 1.40
2513 3029 6.018180 GTCGTGCCTTTCTTTTCTCTCTTTTA 60.018 38.462 0.00 0.00 0.00 1.52
2514 3030 4.881850 TCGTGCCTTTCTTTTCTCTCTTTT 59.118 37.500 0.00 0.00 0.00 2.27
2515 3031 4.273724 GTCGTGCCTTTCTTTTCTCTCTTT 59.726 41.667 0.00 0.00 0.00 2.52
2516 3032 3.810386 GTCGTGCCTTTCTTTTCTCTCTT 59.190 43.478 0.00 0.00 0.00 2.85
2517 3033 3.181465 TGTCGTGCCTTTCTTTTCTCTCT 60.181 43.478 0.00 0.00 0.00 3.10
2518 3034 3.059529 GTGTCGTGCCTTTCTTTTCTCTC 60.060 47.826 0.00 0.00 0.00 3.20
2519 3035 2.872858 GTGTCGTGCCTTTCTTTTCTCT 59.127 45.455 0.00 0.00 0.00 3.10
2520 3036 2.348591 CGTGTCGTGCCTTTCTTTTCTC 60.349 50.000 0.00 0.00 0.00 2.87
2521 3037 1.597663 CGTGTCGTGCCTTTCTTTTCT 59.402 47.619 0.00 0.00 0.00 2.52
2522 3038 1.329599 ACGTGTCGTGCCTTTCTTTTC 59.670 47.619 0.00 0.00 39.18 2.29
2523 3039 1.375551 ACGTGTCGTGCCTTTCTTTT 58.624 45.000 0.00 0.00 39.18 2.27
2524 3040 3.074594 ACGTGTCGTGCCTTTCTTT 57.925 47.368 0.00 0.00 39.18 2.52
2525 3041 4.848685 ACGTGTCGTGCCTTTCTT 57.151 50.000 0.00 0.00 39.18 2.52
2554 3070 6.851222 TGAACACACACACACAAAATTTTT 57.149 29.167 0.00 0.00 0.00 1.94
2555 3071 6.183360 CGATGAACACACACACACAAAATTTT 60.183 34.615 0.00 0.00 0.00 1.82
2556 3072 5.288232 CGATGAACACACACACACAAAATTT 59.712 36.000 0.00 0.00 0.00 1.82
2557 3073 4.797868 CGATGAACACACACACACAAAATT 59.202 37.500 0.00 0.00 0.00 1.82
2558 3074 4.142491 ACGATGAACACACACACACAAAAT 60.142 37.500 0.00 0.00 0.00 1.82
2559 3075 3.189495 ACGATGAACACACACACACAAAA 59.811 39.130 0.00 0.00 0.00 2.44
2560 3076 2.744741 ACGATGAACACACACACACAAA 59.255 40.909 0.00 0.00 0.00 2.83
2561 3077 2.095053 CACGATGAACACACACACACAA 59.905 45.455 0.00 0.00 0.00 3.33
2562 3078 1.663135 CACGATGAACACACACACACA 59.337 47.619 0.00 0.00 0.00 3.72
2563 3079 1.930503 TCACGATGAACACACACACAC 59.069 47.619 0.00 0.00 0.00 3.82
2564 3080 2.301577 TCACGATGAACACACACACA 57.698 45.000 0.00 0.00 0.00 3.72
2565 3081 3.878086 AATCACGATGAACACACACAC 57.122 42.857 0.00 0.00 0.00 3.82
2566 3082 3.873952 TCAAATCACGATGAACACACACA 59.126 39.130 0.00 0.00 0.00 3.72
2567 3083 4.466567 TCAAATCACGATGAACACACAC 57.533 40.909 0.00 0.00 0.00 3.82
2568 3084 4.514816 ACATCAAATCACGATGAACACACA 59.485 37.500 7.12 0.00 42.39 3.72
2569 3085 4.847757 CACATCAAATCACGATGAACACAC 59.152 41.667 7.12 0.00 42.39 3.82
2570 3086 4.754114 TCACATCAAATCACGATGAACACA 59.246 37.500 7.12 0.00 42.39 3.72
2571 3087 5.281693 TCACATCAAATCACGATGAACAC 57.718 39.130 7.12 0.00 42.39 3.32
2572 3088 5.220453 CGATCACATCAAATCACGATGAACA 60.220 40.000 7.12 0.00 42.39 3.18
2573 3089 5.005682 TCGATCACATCAAATCACGATGAAC 59.994 40.000 7.12 0.00 42.39 3.18
2574 3090 5.108517 TCGATCACATCAAATCACGATGAA 58.891 37.500 7.12 0.00 42.39 2.57
2575 3091 4.681744 TCGATCACATCAAATCACGATGA 58.318 39.130 7.12 0.00 42.39 2.92
2576 3092 5.389202 GGATCGATCACATCAAATCACGATG 60.389 44.000 25.93 0.00 44.77 3.84
2577 3093 4.687948 GGATCGATCACATCAAATCACGAT 59.312 41.667 25.93 0.00 40.87 3.73
2578 3094 4.051237 GGATCGATCACATCAAATCACGA 58.949 43.478 25.93 0.00 0.00 4.35
2579 3095 4.053983 AGGATCGATCACATCAAATCACG 58.946 43.478 25.93 0.00 0.00 4.35
2580 3096 4.319333 GCAGGATCGATCACATCAAATCAC 60.319 45.833 25.93 4.90 0.00 3.06
2581 3097 3.811497 GCAGGATCGATCACATCAAATCA 59.189 43.478 25.93 0.00 0.00 2.57
2582 3098 3.120752 CGCAGGATCGATCACATCAAATC 60.121 47.826 25.93 6.11 0.00 2.17
2583 3099 2.804527 CGCAGGATCGATCACATCAAAT 59.195 45.455 25.93 0.00 0.00 2.32
2584 3100 2.204237 CGCAGGATCGATCACATCAAA 58.796 47.619 25.93 0.00 0.00 2.69
2585 3101 1.136891 ACGCAGGATCGATCACATCAA 59.863 47.619 25.93 0.00 0.00 2.57
2586 3102 0.746659 ACGCAGGATCGATCACATCA 59.253 50.000 25.93 0.00 0.00 3.07
2587 3103 1.135046 CACGCAGGATCGATCACATC 58.865 55.000 25.93 9.33 0.00 3.06
2588 3104 0.746659 TCACGCAGGATCGATCACAT 59.253 50.000 25.93 9.27 0.00 3.21
2589 3105 0.530288 TTCACGCAGGATCGATCACA 59.470 50.000 25.93 0.00 0.00 3.58
2590 3106 1.640428 TTTCACGCAGGATCGATCAC 58.360 50.000 25.93 15.35 0.00 3.06
2591 3107 2.602257 ATTTCACGCAGGATCGATCA 57.398 45.000 25.93 3.28 0.00 2.92
2592 3108 2.221981 GGAATTTCACGCAGGATCGATC 59.778 50.000 17.36 17.36 0.00 3.69
2593 3109 2.213499 GGAATTTCACGCAGGATCGAT 58.787 47.619 0.00 0.00 0.00 3.59
2594 3110 1.066502 TGGAATTTCACGCAGGATCGA 60.067 47.619 0.00 0.00 0.00 3.59
2595 3111 1.368641 TGGAATTTCACGCAGGATCG 58.631 50.000 0.00 0.00 0.00 3.69
2596 3112 2.487762 TGTTGGAATTTCACGCAGGATC 59.512 45.455 0.00 0.00 0.00 3.36
2597 3113 2.513753 TGTTGGAATTTCACGCAGGAT 58.486 42.857 0.00 0.00 0.00 3.24
2598 3114 1.974265 TGTTGGAATTTCACGCAGGA 58.026 45.000 0.00 0.00 0.00 3.86
2599 3115 2.791383 TTGTTGGAATTTCACGCAGG 57.209 45.000 0.00 0.00 0.00 4.85
2600 3116 3.244976 GGATTGTTGGAATTTCACGCAG 58.755 45.455 0.00 0.00 0.00 5.18
2601 3117 2.625314 TGGATTGTTGGAATTTCACGCA 59.375 40.909 0.00 0.00 0.00 5.24
2602 3118 3.296322 TGGATTGTTGGAATTTCACGC 57.704 42.857 0.00 0.00 0.00 5.34
2603 3119 5.766702 CAATGGATTGTTGGAATTTCACG 57.233 39.130 0.00 0.00 33.22 4.35
2613 3129 2.352617 CGGGTTCACCAATGGATTGTTG 60.353 50.000 6.16 0.00 40.22 3.33
2614 3130 1.892474 CGGGTTCACCAATGGATTGTT 59.108 47.619 6.16 0.00 40.22 2.83
2615 3131 1.544724 CGGGTTCACCAATGGATTGT 58.455 50.000 6.16 0.00 40.22 2.71
2616 3132 0.817013 CCGGGTTCACCAATGGATTG 59.183 55.000 6.16 0.00 40.22 2.67
2617 3133 0.701731 TCCGGGTTCACCAATGGATT 59.298 50.000 6.16 0.00 40.22 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.