Multiple sequence alignment - TraesCS7B01G416200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G416200 chr7B 100.000 4494 0 0 1 4494 683924210 683928703 0.000000e+00 8299
1 TraesCS7B01G416200 chr7B 86.550 1606 151 39 1715 3300 683734921 683736481 0.000000e+00 1709
2 TraesCS7B01G416200 chr7B 89.660 764 52 11 445 1188 683726660 683727416 0.000000e+00 948
3 TraesCS7B01G416200 chr7B 91.630 454 27 10 1 450 27012165 27012611 6.390000e-173 617
4 TraesCS7B01G416200 chr7B 91.256 446 30 9 1 445 88976060 88976497 2.310000e-167 599
5 TraesCS7B01G416200 chr7B 90.625 448 33 8 1 445 700887778 700888219 1.800000e-163 586
6 TraesCS7B01G416200 chr7B 86.061 495 53 13 1202 1686 683734435 683734923 6.660000e-143 518
7 TraesCS7B01G416200 chr7D 91.462 2811 159 32 1278 4036 602914057 602916838 0.000000e+00 3786
8 TraesCS7B01G416200 chr7D 85.661 802 54 22 470 1249 602913299 602914061 0.000000e+00 787
9 TraesCS7B01G416200 chr7D 90.943 265 19 3 4035 4298 602917000 602917260 7.150000e-93 351
10 TraesCS7B01G416200 chr7D 95.000 100 5 0 4395 4494 602917262 602917361 1.670000e-34 158
11 TraesCS7B01G416200 chr7A 90.000 2390 153 41 1715 4072 694557159 694559494 0.000000e+00 3011
12 TraesCS7B01G416200 chr7A 85.784 1238 98 47 473 1680 694555964 694557153 0.000000e+00 1240
13 TraesCS7B01G416200 chr7A 96.721 61 2 0 4434 4494 694559495 694559555 7.950000e-18 102
14 TraesCS7B01G416200 chr6B 98.441 449 5 2 1 449 207834770 207834324 0.000000e+00 789
15 TraesCS7B01G416200 chr6B 93.598 453 14 10 1 448 685081677 685081235 0.000000e+00 662
16 TraesCS7B01G416200 chr6B 83.894 714 75 18 1017 1721 130110851 130111533 0.000000e+00 645
17 TraesCS7B01G416200 chr4B 97.528 445 9 2 1 445 274383128 274383570 0.000000e+00 760
18 TraesCS7B01G416200 chr4D 85.434 714 64 15 1017 1721 214994400 214995082 0.000000e+00 706
19 TraesCS7B01G416200 chr3D 85.154 714 66 15 1017 1721 571453849 571454531 0.000000e+00 695
20 TraesCS7B01G416200 chr3B 85.154 714 66 16 1017 1721 804115609 804116291 0.000000e+00 695
21 TraesCS7B01G416200 chr3B 94.079 456 17 7 1 449 512937013 512936561 0.000000e+00 684
22 TraesCS7B01G416200 chr3B 89.800 451 38 8 1 449 804879661 804880105 5.040000e-159 571
23 TraesCS7B01G416200 chr3A 85.133 713 68 14 1017 1721 567999083 567999765 0.000000e+00 695
24 TraesCS7B01G416200 chr1A 84.454 714 71 13 1017 1721 409857314 409856632 0.000000e+00 667
25 TraesCS7B01G416200 chr2B 85.088 684 62 18 1017 1691 4569977 4569325 0.000000e+00 662
26 TraesCS7B01G416200 chr5B 89.956 458 34 10 1 455 8938421 8937973 8.380000e-162 580


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G416200 chr7B 683924210 683928703 4493 False 8299.0 8299 100.0000 1 4494 1 chr7B.!!$F4 4493
1 TraesCS7B01G416200 chr7B 683734435 683736481 2046 False 1113.5 1709 86.3055 1202 3300 2 chr7B.!!$F6 2098
2 TraesCS7B01G416200 chr7B 683726660 683727416 756 False 948.0 948 89.6600 445 1188 1 chr7B.!!$F3 743
3 TraesCS7B01G416200 chr7D 602913299 602917361 4062 False 1270.5 3786 90.7665 470 4494 4 chr7D.!!$F1 4024
4 TraesCS7B01G416200 chr7A 694555964 694559555 3591 False 1451.0 3011 90.8350 473 4494 3 chr7A.!!$F1 4021
5 TraesCS7B01G416200 chr6B 130110851 130111533 682 False 645.0 645 83.8940 1017 1721 1 chr6B.!!$F1 704
6 TraesCS7B01G416200 chr4D 214994400 214995082 682 False 706.0 706 85.4340 1017 1721 1 chr4D.!!$F1 704
7 TraesCS7B01G416200 chr3D 571453849 571454531 682 False 695.0 695 85.1540 1017 1721 1 chr3D.!!$F1 704
8 TraesCS7B01G416200 chr3B 804115609 804116291 682 False 695.0 695 85.1540 1017 1721 1 chr3B.!!$F1 704
9 TraesCS7B01G416200 chr3A 567999083 567999765 682 False 695.0 695 85.1330 1017 1721 1 chr3A.!!$F1 704
10 TraesCS7B01G416200 chr1A 409856632 409857314 682 True 667.0 667 84.4540 1017 1721 1 chr1A.!!$R1 704
11 TraesCS7B01G416200 chr2B 4569325 4569977 652 True 662.0 662 85.0880 1017 1691 1 chr2B.!!$R1 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 301 0.036164 TGTCTAAACACATGCGGGCT 59.964 50.0 0.00 0.00 0.00 5.19 F
333 334 0.108281 TCAGCTCAGCATGTCTCAGC 60.108 55.0 0.00 5.17 37.40 4.26 F
373 374 0.109153 ACAGCAACTGCATGGACTCA 59.891 50.0 4.22 0.00 45.16 3.41 F
2124 2243 0.029834 GGTGTGTTGCTGACTTGCTG 59.970 55.0 0.00 0.00 0.00 4.41 F
3399 3533 0.319900 GCGAAGACAGAGGCAGAACA 60.320 55.0 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2229 0.101040 TGCAACAGCAAGTCAGCAAC 59.899 50.0 6.84 0.00 37.96 4.17 R
2111 2230 0.816373 TTGCAACAGCAAGTCAGCAA 59.184 45.0 13.94 13.94 42.91 3.91 R
2206 2329 0.976641 AGTCCCAACTGATGAGCGAA 59.023 50.0 0.00 0.00 33.32 4.70 R
3404 3538 0.762418 TTTGTTCTCGGCTCCTCCAA 59.238 50.0 0.00 0.00 34.01 3.53 R
4311 4635 0.178955 TACACCTTCTCCACACCGGA 60.179 55.0 9.46 0.00 43.61 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 8.831715 AAAAAGCTCGGAATTTCAAATATGTT 57.168 26.923 0.00 0.00 0.00 2.71
122 123 8.466086 AAAAGCTCGGAATTTCAAATATGTTC 57.534 30.769 0.00 0.00 0.00 3.18
123 124 6.757897 AGCTCGGAATTTCAAATATGTTCA 57.242 33.333 0.00 0.00 0.00 3.18
124 125 7.156876 AGCTCGGAATTTCAAATATGTTCAA 57.843 32.000 0.00 0.00 0.00 2.69
125 126 7.601856 AGCTCGGAATTTCAAATATGTTCAAA 58.398 30.769 0.00 0.00 0.00 2.69
126 127 8.253113 AGCTCGGAATTTCAAATATGTTCAAAT 58.747 29.630 0.00 0.00 0.00 2.32
127 128 8.872845 GCTCGGAATTTCAAATATGTTCAAATT 58.127 29.630 0.00 5.15 30.98 1.82
236 237 8.918961 TTGTGTTCATATTTTTCGAGTTTTGT 57.081 26.923 0.00 0.00 0.00 2.83
237 238 8.918961 TGTGTTCATATTTTTCGAGTTTTGTT 57.081 26.923 0.00 0.00 0.00 2.83
238 239 9.015577 TGTGTTCATATTTTTCGAGTTTTGTTC 57.984 29.630 0.00 0.00 0.00 3.18
239 240 9.015577 GTGTTCATATTTTTCGAGTTTTGTTCA 57.984 29.630 0.00 0.00 0.00 3.18
240 241 9.743057 TGTTCATATTTTTCGAGTTTTGTTCAT 57.257 25.926 0.00 0.00 0.00 2.57
242 243 9.958234 TTCATATTTTTCGAGTTTTGTTCATCA 57.042 25.926 0.00 0.00 0.00 3.07
246 247 6.968004 TTTTCGAGTTTTGTTCATCATTCG 57.032 33.333 0.00 0.00 0.00 3.34
247 248 5.915812 TTCGAGTTTTGTTCATCATTCGA 57.084 34.783 0.00 0.00 34.47 3.71
248 249 5.915812 TCGAGTTTTGTTCATCATTCGAA 57.084 34.783 0.00 0.00 33.51 3.71
249 250 6.293713 TCGAGTTTTGTTCATCATTCGAAA 57.706 33.333 0.00 0.00 33.51 3.46
250 251 6.720343 TCGAGTTTTGTTCATCATTCGAAAA 58.280 32.000 0.00 0.00 33.51 2.29
251 252 6.631238 TCGAGTTTTGTTCATCATTCGAAAAC 59.369 34.615 0.00 2.02 33.51 2.43
252 253 6.413526 CGAGTTTTGTTCATCATTCGAAAACA 59.586 34.615 0.00 5.01 32.23 2.83
253 254 7.044380 CGAGTTTTGTTCATCATTCGAAAACAA 60.044 33.333 17.00 17.00 38.27 2.83
254 255 8.647143 AGTTTTGTTCATCATTCGAAAACAAT 57.353 26.923 20.03 7.99 39.05 2.71
255 256 9.097257 AGTTTTGTTCATCATTCGAAAACAATT 57.903 25.926 20.03 10.34 39.05 2.32
256 257 9.146270 GTTTTGTTCATCATTCGAAAACAATTG 57.854 29.630 20.03 3.24 39.05 2.32
257 258 8.417780 TTTGTTCATCATTCGAAAACAATTGT 57.582 26.923 20.03 4.92 39.05 2.71
258 259 8.417780 TTGTTCATCATTCGAAAACAATTGTT 57.582 26.923 18.13 18.13 36.61 2.83
260 261 8.326713 TGTTCATCATTCGAAAACAATTGTTTG 58.673 29.630 31.54 21.72 46.47 2.93
261 262 8.538856 GTTCATCATTCGAAAACAATTGTTTGA 58.461 29.630 31.54 24.53 46.47 2.69
262 263 8.640091 TCATCATTCGAAAACAATTGTTTGAA 57.360 26.923 31.54 28.52 46.47 2.69
263 264 9.091784 TCATCATTCGAAAACAATTGTTTGAAA 57.908 25.926 31.54 24.71 46.47 2.69
264 265 9.866936 CATCATTCGAAAACAATTGTTTGAAAT 57.133 25.926 31.54 25.53 46.47 2.17
266 267 9.913451 TCATTCGAAAACAATTGTTTGAAATTC 57.087 25.926 31.54 23.62 46.47 2.17
267 268 8.871603 CATTCGAAAACAATTGTTTGAAATTCG 58.128 29.630 30.80 30.80 46.47 3.34
268 269 7.742019 TCGAAAACAATTGTTTGAAATTCGA 57.258 28.000 32.98 32.98 46.47 3.71
269 270 8.174484 TCGAAAACAATTGTTTGAAATTCGAA 57.826 26.923 33.75 24.29 46.47 3.71
270 271 8.648097 TCGAAAACAATTGTTTGAAATTCGAAA 58.352 25.926 33.75 22.57 46.47 3.46
271 272 9.419737 CGAAAACAATTGTTTGAAATTCGAAAT 57.580 25.926 31.94 17.75 46.47 2.17
276 277 9.701355 ACAATTGTTTGAAATTCGAAATTGTTC 57.299 25.926 15.25 5.41 31.84 3.18
277 278 9.699985 CAATTGTTTGAAATTCGAAATTGTTCA 57.300 25.926 2.53 7.84 34.60 3.18
278 279 9.919348 AATTGTTTGAAATTCGAAATTGTTCAG 57.081 25.926 2.53 0.00 32.89 3.02
279 280 6.932051 TGTTTGAAATTCGAAATTGTTCAGC 58.068 32.000 2.53 8.02 32.89 4.26
280 281 6.533012 TGTTTGAAATTCGAAATTGTTCAGCA 59.467 30.769 2.53 9.98 32.89 4.41
281 282 7.224362 TGTTTGAAATTCGAAATTGTTCAGCAT 59.776 29.630 2.53 0.00 32.89 3.79
282 283 6.693761 TGAAATTCGAAATTGTTCAGCATG 57.306 33.333 2.53 0.00 32.89 4.06
283 284 6.215121 TGAAATTCGAAATTGTTCAGCATGT 58.785 32.000 2.53 0.00 37.40 3.21
284 285 6.363088 TGAAATTCGAAATTGTTCAGCATGTC 59.637 34.615 2.53 0.00 37.40 3.06
285 286 5.633830 ATTCGAAATTGTTCAGCATGTCT 57.366 34.783 0.00 0.00 37.40 3.41
286 287 6.741992 ATTCGAAATTGTTCAGCATGTCTA 57.258 33.333 0.00 0.00 37.40 2.59
287 288 6.552859 TTCGAAATTGTTCAGCATGTCTAA 57.447 33.333 0.00 0.00 37.40 2.10
288 289 6.552859 TCGAAATTGTTCAGCATGTCTAAA 57.447 33.333 0.00 0.00 37.40 1.85
289 290 6.370593 TCGAAATTGTTCAGCATGTCTAAAC 58.629 36.000 0.00 0.00 37.40 2.01
290 291 6.017523 TCGAAATTGTTCAGCATGTCTAAACA 60.018 34.615 2.78 2.78 37.40 2.83
291 292 6.086765 CGAAATTGTTCAGCATGTCTAAACAC 59.913 38.462 5.63 0.00 33.98 3.32
292 293 6.389830 AATTGTTCAGCATGTCTAAACACA 57.610 33.333 5.63 0.65 38.48 3.72
293 294 6.579666 ATTGTTCAGCATGTCTAAACACAT 57.420 33.333 5.63 2.37 38.48 3.21
298 299 2.830772 CATGTCTAAACACATGCGGG 57.169 50.000 0.83 0.00 45.43 6.13
299 300 1.094785 ATGTCTAAACACATGCGGGC 58.905 50.000 0.00 0.00 38.48 6.13
300 301 0.036164 TGTCTAAACACATGCGGGCT 59.964 50.000 0.00 0.00 0.00 5.19
301 302 0.447801 GTCTAAACACATGCGGGCTG 59.552 55.000 0.00 0.00 0.00 4.85
302 303 1.137404 CTAAACACATGCGGGCTGC 59.863 57.895 12.43 12.43 46.70 5.25
303 304 2.270297 CTAAACACATGCGGGCTGCC 62.270 60.000 17.12 11.05 45.60 4.85
304 305 4.972733 AACACATGCGGGCTGCCA 62.973 61.111 22.05 4.25 45.60 4.92
305 306 4.972733 ACACATGCGGGCTGCCAA 62.973 61.111 22.05 5.66 45.60 4.52
306 307 3.682885 CACATGCGGGCTGCCAAA 61.683 61.111 22.05 5.26 45.60 3.28
307 308 3.683937 ACATGCGGGCTGCCAAAC 61.684 61.111 22.05 9.42 45.60 2.93
308 309 3.682885 CATGCGGGCTGCCAAACA 61.683 61.111 22.05 15.06 45.60 2.83
309 310 2.916703 ATGCGGGCTGCCAAACAA 60.917 55.556 22.05 0.91 45.60 2.83
310 311 2.506061 ATGCGGGCTGCCAAACAAA 61.506 52.632 22.05 0.00 45.60 2.83
311 312 2.356194 GCGGGCTGCCAAACAAAG 60.356 61.111 22.05 3.41 37.76 2.77
312 313 3.128375 CGGGCTGCCAAACAAAGT 58.872 55.556 22.05 0.00 0.00 2.66
313 314 1.007387 CGGGCTGCCAAACAAAGTC 60.007 57.895 22.05 0.00 0.00 3.01
314 315 1.455383 CGGGCTGCCAAACAAAGTCT 61.455 55.000 22.05 0.00 0.00 3.24
315 316 0.315251 GGGCTGCCAAACAAAGTCTC 59.685 55.000 22.05 0.00 0.00 3.36
316 317 1.032014 GGCTGCCAAACAAAGTCTCA 58.968 50.000 15.17 0.00 0.00 3.27
317 318 1.000938 GGCTGCCAAACAAAGTCTCAG 60.001 52.381 15.17 0.00 0.00 3.35
318 319 1.601412 GCTGCCAAACAAAGTCTCAGC 60.601 52.381 0.00 0.00 38.62 4.26
319 320 1.952296 CTGCCAAACAAAGTCTCAGCT 59.048 47.619 0.00 0.00 0.00 4.24
320 321 1.949525 TGCCAAACAAAGTCTCAGCTC 59.050 47.619 0.00 0.00 0.00 4.09
321 322 1.949525 GCCAAACAAAGTCTCAGCTCA 59.050 47.619 0.00 0.00 0.00 4.26
322 323 2.031333 GCCAAACAAAGTCTCAGCTCAG 60.031 50.000 0.00 0.00 0.00 3.35
323 324 2.031333 CCAAACAAAGTCTCAGCTCAGC 60.031 50.000 0.00 0.00 0.00 4.26
324 325 2.615447 CAAACAAAGTCTCAGCTCAGCA 59.385 45.455 0.00 0.00 0.00 4.41
325 326 2.855209 ACAAAGTCTCAGCTCAGCAT 57.145 45.000 0.00 0.00 0.00 3.79
326 327 2.424557 ACAAAGTCTCAGCTCAGCATG 58.575 47.619 0.00 0.00 37.54 4.06
327 328 2.224475 ACAAAGTCTCAGCTCAGCATGT 60.224 45.455 0.00 0.00 37.40 3.21
328 329 2.383368 AAGTCTCAGCTCAGCATGTC 57.617 50.000 0.00 0.00 37.40 3.06
329 330 1.559368 AGTCTCAGCTCAGCATGTCT 58.441 50.000 0.00 0.00 37.40 3.41
330 331 1.477700 AGTCTCAGCTCAGCATGTCTC 59.522 52.381 0.00 0.00 37.40 3.36
331 332 1.204231 GTCTCAGCTCAGCATGTCTCA 59.796 52.381 0.00 0.00 37.40 3.27
332 333 1.477295 TCTCAGCTCAGCATGTCTCAG 59.523 52.381 0.00 0.00 37.40 3.35
333 334 0.108281 TCAGCTCAGCATGTCTCAGC 60.108 55.000 0.00 5.17 37.40 4.26
334 335 1.153608 AGCTCAGCATGTCTCAGCG 60.154 57.895 0.00 0.00 37.31 5.18
335 336 2.811066 GCTCAGCATGTCTCAGCGC 61.811 63.158 0.00 0.00 37.40 5.92
336 337 1.447314 CTCAGCATGTCTCAGCGCA 60.447 57.895 11.47 0.00 37.40 6.09
337 338 0.810426 CTCAGCATGTCTCAGCGCAT 60.810 55.000 11.47 0.00 37.40 4.73
338 339 0.461135 TCAGCATGTCTCAGCGCATA 59.539 50.000 11.47 0.00 37.40 3.14
339 340 0.580578 CAGCATGTCTCAGCGCATAC 59.419 55.000 11.47 1.96 35.48 2.39
340 341 0.176449 AGCATGTCTCAGCGCATACA 59.824 50.000 11.47 8.45 35.48 2.29
341 342 1.202615 AGCATGTCTCAGCGCATACAT 60.203 47.619 11.47 10.56 35.48 2.29
342 343 1.194098 GCATGTCTCAGCGCATACATC 59.806 52.381 11.47 4.56 30.32 3.06
343 344 1.454653 CATGTCTCAGCGCATACATCG 59.545 52.381 11.47 5.12 30.32 3.84
350 351 3.408755 CGCATACATCGCTGCCAA 58.591 55.556 0.00 0.00 34.89 4.52
351 352 1.720894 CGCATACATCGCTGCCAAA 59.279 52.632 0.00 0.00 34.89 3.28
352 353 0.589729 CGCATACATCGCTGCCAAAC 60.590 55.000 0.00 0.00 34.89 2.93
353 354 0.451383 GCATACATCGCTGCCAAACA 59.549 50.000 0.00 0.00 32.15 2.83
354 355 1.135431 GCATACATCGCTGCCAAACAA 60.135 47.619 0.00 0.00 32.15 2.83
355 356 2.518949 CATACATCGCTGCCAAACAAC 58.481 47.619 0.00 0.00 0.00 3.32
356 357 1.598882 TACATCGCTGCCAAACAACA 58.401 45.000 0.00 0.00 0.00 3.33
357 358 0.311790 ACATCGCTGCCAAACAACAG 59.688 50.000 0.00 0.00 36.96 3.16
363 364 1.563111 CTGCCAAACAACAGCAACTG 58.437 50.000 0.00 0.00 35.79 3.16
364 365 0.459934 TGCCAAACAACAGCAACTGC 60.460 50.000 0.00 0.00 42.49 4.40
365 366 0.459934 GCCAAACAACAGCAACTGCA 60.460 50.000 4.22 0.00 45.16 4.41
366 367 1.807377 GCCAAACAACAGCAACTGCAT 60.807 47.619 4.22 0.00 45.16 3.96
367 368 1.862201 CCAAACAACAGCAACTGCATG 59.138 47.619 4.22 2.89 45.16 4.06
368 369 1.862201 CAAACAACAGCAACTGCATGG 59.138 47.619 4.22 0.00 45.16 3.66
369 370 1.401761 AACAACAGCAACTGCATGGA 58.598 45.000 4.22 0.00 45.16 3.41
370 371 0.670162 ACAACAGCAACTGCATGGAC 59.330 50.000 4.22 0.00 45.16 4.02
371 372 0.956633 CAACAGCAACTGCATGGACT 59.043 50.000 4.22 0.00 45.16 3.85
372 373 1.068748 CAACAGCAACTGCATGGACTC 60.069 52.381 4.22 0.00 45.16 3.36
373 374 0.109153 ACAGCAACTGCATGGACTCA 59.891 50.000 4.22 0.00 45.16 3.41
374 375 0.803117 CAGCAACTGCATGGACTCAG 59.197 55.000 4.22 0.00 45.16 3.35
375 376 0.959372 AGCAACTGCATGGACTCAGC 60.959 55.000 4.22 0.00 45.16 4.26
376 377 1.239296 GCAACTGCATGGACTCAGCA 61.239 55.000 0.00 0.00 41.59 4.41
377 378 1.460504 CAACTGCATGGACTCAGCAT 58.539 50.000 0.00 0.00 37.68 3.79
378 379 1.132453 CAACTGCATGGACTCAGCATG 59.868 52.381 0.00 0.00 37.68 4.06
379 380 0.327259 ACTGCATGGACTCAGCATGT 59.673 50.000 0.00 0.00 37.68 3.21
380 381 1.015109 CTGCATGGACTCAGCATGTC 58.985 55.000 0.00 0.00 37.68 3.06
381 382 0.616891 TGCATGGACTCAGCATGTCT 59.383 50.000 0.00 0.00 37.40 3.41
382 383 1.832998 TGCATGGACTCAGCATGTCTA 59.167 47.619 0.00 0.00 37.40 2.59
383 384 2.208431 GCATGGACTCAGCATGTCTAC 58.792 52.381 0.00 0.00 37.40 2.59
384 385 2.419159 GCATGGACTCAGCATGTCTACA 60.419 50.000 0.00 0.00 37.40 2.74
385 386 3.193263 CATGGACTCAGCATGTCTACAC 58.807 50.000 0.00 0.00 37.40 2.90
386 387 2.529632 TGGACTCAGCATGTCTACACT 58.470 47.619 0.00 0.00 37.40 3.55
387 388 2.899900 TGGACTCAGCATGTCTACACTT 59.100 45.455 0.00 0.00 37.40 3.16
388 389 4.086457 TGGACTCAGCATGTCTACACTTA 58.914 43.478 0.00 0.00 37.40 2.24
389 390 4.158579 TGGACTCAGCATGTCTACACTTAG 59.841 45.833 0.00 0.00 37.40 2.18
390 391 4.109050 GACTCAGCATGTCTACACTTAGC 58.891 47.826 0.00 0.00 37.40 3.09
391 392 3.511540 ACTCAGCATGTCTACACTTAGCA 59.488 43.478 0.00 0.00 37.40 3.49
392 393 4.161189 ACTCAGCATGTCTACACTTAGCAT 59.839 41.667 0.00 0.00 37.40 3.79
393 394 4.436332 TCAGCATGTCTACACTTAGCATG 58.564 43.478 0.00 0.00 39.89 4.06
394 395 4.081476 TCAGCATGTCTACACTTAGCATGT 60.081 41.667 0.00 0.00 39.52 3.21
395 396 5.127031 TCAGCATGTCTACACTTAGCATGTA 59.873 40.000 0.00 0.00 39.52 2.29
396 397 5.987953 CAGCATGTCTACACTTAGCATGTAT 59.012 40.000 0.00 0.00 39.52 2.29
397 398 5.987953 AGCATGTCTACACTTAGCATGTATG 59.012 40.000 0.00 0.00 39.52 2.39
398 399 5.985530 GCATGTCTACACTTAGCATGTATGA 59.014 40.000 0.00 0.00 39.52 2.15
399 400 6.145209 GCATGTCTACACTTAGCATGTATGAG 59.855 42.308 0.00 0.00 39.52 2.90
400 401 7.428826 CATGTCTACACTTAGCATGTATGAGA 58.571 38.462 0.00 0.00 36.32 3.27
401 402 7.032377 TGTCTACACTTAGCATGTATGAGAG 57.968 40.000 0.00 0.00 32.24 3.20
402 403 6.039829 TGTCTACACTTAGCATGTATGAGAGG 59.960 42.308 0.00 0.00 32.24 3.69
403 404 6.263392 GTCTACACTTAGCATGTATGAGAGGA 59.737 42.308 0.00 0.00 32.24 3.71
404 405 5.528043 ACACTTAGCATGTATGAGAGGAG 57.472 43.478 0.00 0.00 0.00 3.69
405 406 5.204292 ACACTTAGCATGTATGAGAGGAGA 58.796 41.667 0.00 0.00 0.00 3.71
406 407 5.658634 ACACTTAGCATGTATGAGAGGAGAA 59.341 40.000 0.00 0.00 0.00 2.87
407 408 5.982516 CACTTAGCATGTATGAGAGGAGAAC 59.017 44.000 0.00 0.00 0.00 3.01
408 409 5.658634 ACTTAGCATGTATGAGAGGAGAACA 59.341 40.000 0.00 0.00 0.00 3.18
409 410 6.155221 ACTTAGCATGTATGAGAGGAGAACAA 59.845 38.462 0.00 0.00 0.00 2.83
410 411 4.764172 AGCATGTATGAGAGGAGAACAAC 58.236 43.478 0.00 0.00 0.00 3.32
411 412 4.469227 AGCATGTATGAGAGGAGAACAACT 59.531 41.667 0.00 0.00 0.00 3.16
412 413 5.658634 AGCATGTATGAGAGGAGAACAACTA 59.341 40.000 0.00 0.00 0.00 2.24
413 414 5.982516 GCATGTATGAGAGGAGAACAACTAG 59.017 44.000 0.00 0.00 0.00 2.57
414 415 6.511416 CATGTATGAGAGGAGAACAACTAGG 58.489 44.000 0.00 0.00 0.00 3.02
415 416 4.402793 TGTATGAGAGGAGAACAACTAGGC 59.597 45.833 0.00 0.00 0.00 3.93
416 417 3.176924 TGAGAGGAGAACAACTAGGCT 57.823 47.619 0.00 0.00 0.00 4.58
417 418 4.317530 TGAGAGGAGAACAACTAGGCTA 57.682 45.455 0.00 0.00 0.00 3.93
418 419 4.274147 TGAGAGGAGAACAACTAGGCTAG 58.726 47.826 19.83 19.83 0.00 3.42
419 420 3.634910 GAGAGGAGAACAACTAGGCTAGG 59.365 52.174 24.57 10.93 0.00 3.02
420 421 3.011934 AGAGGAGAACAACTAGGCTAGGT 59.988 47.826 24.57 16.82 0.00 3.08
421 422 3.770388 GAGGAGAACAACTAGGCTAGGTT 59.230 47.826 24.57 18.74 0.00 3.50
422 423 3.770388 AGGAGAACAACTAGGCTAGGTTC 59.230 47.826 24.49 24.49 38.44 3.62
423 424 3.514309 GGAGAACAACTAGGCTAGGTTCA 59.486 47.826 29.25 0.27 40.11 3.18
424 425 4.020485 GGAGAACAACTAGGCTAGGTTCAA 60.020 45.833 29.25 0.00 40.11 2.69
425 426 5.153950 AGAACAACTAGGCTAGGTTCAAG 57.846 43.478 29.25 16.00 40.11 3.02
426 427 3.336138 ACAACTAGGCTAGGTTCAAGC 57.664 47.619 24.57 0.00 39.33 4.01
427 428 2.637872 ACAACTAGGCTAGGTTCAAGCA 59.362 45.455 24.57 0.00 41.93 3.91
428 429 3.264450 ACAACTAGGCTAGGTTCAAGCAT 59.736 43.478 24.57 0.00 41.93 3.79
429 430 3.550437 ACTAGGCTAGGTTCAAGCATG 57.450 47.619 24.57 0.00 41.93 4.06
430 431 2.216898 CTAGGCTAGGTTCAAGCATGC 58.783 52.381 10.51 10.51 41.93 4.06
431 432 0.622665 AGGCTAGGTTCAAGCATGCT 59.377 50.000 16.30 16.30 41.93 3.79
432 433 1.839994 AGGCTAGGTTCAAGCATGCTA 59.160 47.619 23.00 2.60 41.93 3.49
433 434 1.943340 GGCTAGGTTCAAGCATGCTAC 59.057 52.381 23.00 15.70 41.93 3.58
434 435 1.943340 GCTAGGTTCAAGCATGCTACC 59.057 52.381 24.78 24.78 39.83 3.18
435 436 2.680805 GCTAGGTTCAAGCATGCTACCA 60.681 50.000 30.62 19.24 39.83 3.25
436 437 2.584835 AGGTTCAAGCATGCTACCAA 57.415 45.000 30.62 17.90 34.96 3.67
437 438 2.875296 AGGTTCAAGCATGCTACCAAA 58.125 42.857 30.62 16.90 34.96 3.28
438 439 2.558359 AGGTTCAAGCATGCTACCAAAC 59.442 45.455 30.62 24.31 34.96 2.93
439 440 2.295909 GGTTCAAGCATGCTACCAAACA 59.704 45.455 26.44 4.75 33.60 2.83
440 441 3.308530 GTTCAAGCATGCTACCAAACAC 58.691 45.455 23.00 7.42 0.00 3.32
441 442 2.580962 TCAAGCATGCTACCAAACACA 58.419 42.857 23.00 0.00 0.00 3.72
442 443 2.293122 TCAAGCATGCTACCAAACACAC 59.707 45.455 23.00 0.00 0.00 3.82
443 444 1.247567 AGCATGCTACCAAACACACC 58.752 50.000 21.21 0.00 0.00 4.16
939 984 0.699577 TCCCCTGGTTTGGTGGAGAA 60.700 55.000 0.00 0.00 0.00 2.87
974 1019 2.230130 TTGAAATTTGGAGCCGGGAT 57.770 45.000 2.18 0.00 0.00 3.85
989 1034 2.660064 GGATATCGGGCTGGGCGAT 61.660 63.158 0.00 0.00 0.00 4.58
997 1042 2.263741 GGCTGGGCGATAATGGCTG 61.264 63.158 0.00 0.00 34.31 4.85
1269 1353 2.922234 GGGGGCTCATCTCCCTTG 59.078 66.667 0.00 0.00 43.41 3.61
1270 1354 2.194326 GGGGCTCATCTCCCTTGC 59.806 66.667 0.00 0.00 43.41 4.01
1271 1355 2.194326 GGGCTCATCTCCCTTGCC 59.806 66.667 0.00 0.00 40.66 4.52
1272 1356 2.194326 GGCTCATCTCCCTTGCCC 59.806 66.667 0.00 0.00 37.81 5.36
1273 1357 2.381941 GGCTCATCTCCCTTGCCCT 61.382 63.158 0.00 0.00 37.81 5.19
1274 1358 1.148048 GCTCATCTCCCTTGCCCTC 59.852 63.158 0.00 0.00 0.00 4.30
1275 1359 1.445095 CTCATCTCCCTTGCCCTCG 59.555 63.158 0.00 0.00 0.00 4.63
1276 1360 2.203126 CATCTCCCTTGCCCTCGC 60.203 66.667 0.00 0.00 0.00 5.03
1277 1361 3.483869 ATCTCCCTTGCCCTCGCC 61.484 66.667 0.00 0.00 0.00 5.54
1470 1554 0.745486 TGGAGAAGCATGCCGATGTG 60.745 55.000 15.66 0.00 31.50 3.21
1471 1555 1.354506 GAGAAGCATGCCGATGTGC 59.645 57.895 15.66 0.00 41.57 4.57
1570 1654 3.013219 GAGTTCTTGCTTCCTGAATCCC 58.987 50.000 0.00 0.00 0.00 3.85
1574 1658 3.038280 TCTTGCTTCCTGAATCCCGATA 58.962 45.455 0.00 0.00 0.00 2.92
1644 1737 8.121305 TGTTCAGAATTGTTGGCTATAAACAT 57.879 30.769 0.00 0.00 37.38 2.71
1828 1934 9.944376 AATTTGAGTATCTAAGTTACAGCTTGA 57.056 29.630 0.00 0.00 32.47 3.02
1838 1944 8.794553 TCTAAGTTACAGCTTGATATACTAGCC 58.205 37.037 0.00 0.00 45.62 3.93
1841 1949 7.662897 AGTTACAGCTTGATATACTAGCCTTC 58.337 38.462 0.00 0.00 45.62 3.46
1879 1987 1.066858 ACACTGGTCATAGGAACGCAG 60.067 52.381 0.00 0.00 31.55 5.18
1880 1988 5.477328 GACACTGGTCATAGGAACGCAGT 62.477 52.174 0.00 0.00 44.03 4.40
1881 1989 1.204941 ACTGGTCATAGGAACGCAGTC 59.795 52.381 0.00 0.00 45.00 3.51
1882 1990 0.535335 TGGTCATAGGAACGCAGTCC 59.465 55.000 0.00 0.00 45.00 3.85
1883 1991 0.535335 GGTCATAGGAACGCAGTCCA 59.465 55.000 5.51 0.00 45.00 4.02
1884 1992 1.139058 GGTCATAGGAACGCAGTCCAT 59.861 52.381 5.51 0.00 45.00 3.41
1886 1994 3.553096 GGTCATAGGAACGCAGTCCATAG 60.553 52.174 5.51 0.00 45.00 2.23
1887 1995 3.068307 GTCATAGGAACGCAGTCCATAGT 59.932 47.826 5.51 0.00 45.00 2.12
1888 1996 3.704566 TCATAGGAACGCAGTCCATAGTT 59.295 43.478 5.51 0.00 45.00 2.24
1889 1997 2.674796 AGGAACGCAGTCCATAGTTC 57.325 50.000 5.51 0.00 45.00 3.01
1891 1999 2.093973 AGGAACGCAGTCCATAGTTCTG 60.094 50.000 5.51 0.00 45.00 3.02
1892 2000 1.661112 GAACGCAGTCCATAGTTCTGC 59.339 52.381 6.35 6.35 45.00 4.26
1915 2025 5.657474 CTTGCATTGGATAAACTGAGCATT 58.343 37.500 0.00 0.00 0.00 3.56
1934 2044 4.142071 GCATTTTCTCCTTCAGATTTCCCC 60.142 45.833 0.00 0.00 0.00 4.81
1961 2072 4.389374 TGTTCTTAGTTGCTTGAAGGGAG 58.611 43.478 0.00 0.00 0.00 4.30
1963 2074 4.706842 TCTTAGTTGCTTGAAGGGAGTT 57.293 40.909 0.00 0.00 0.00 3.01
1974 2085 5.104900 GCTTGAAGGGAGTTAGTGATCCTTA 60.105 44.000 0.00 0.00 37.88 2.69
1979 2090 4.162509 AGGGAGTTAGTGATCCTTAAGCAC 59.837 45.833 0.00 0.19 35.80 4.40
1993 2104 1.747709 AAGCACTGGCATCTGATCAC 58.252 50.000 0.00 0.00 44.61 3.06
1994 2105 0.910338 AGCACTGGCATCTGATCACT 59.090 50.000 0.00 0.00 44.61 3.41
2001 2112 3.609853 TGGCATCTGATCACTTTACCAC 58.390 45.455 0.00 0.00 0.00 4.16
2002 2113 2.945668 GGCATCTGATCACTTTACCACC 59.054 50.000 0.00 0.00 0.00 4.61
2005 2116 4.274459 GCATCTGATCACTTTACCACCATC 59.726 45.833 0.00 0.00 0.00 3.51
2071 2183 4.137116 ACTGTACTTTTGACTGACTGCA 57.863 40.909 0.00 0.00 0.00 4.41
2072 2184 3.871594 ACTGTACTTTTGACTGACTGCAC 59.128 43.478 0.00 0.00 0.00 4.57
2073 2185 3.867857 TGTACTTTTGACTGACTGCACA 58.132 40.909 0.00 0.00 0.00 4.57
2074 2186 3.871006 TGTACTTTTGACTGACTGCACAG 59.129 43.478 2.91 2.91 42.78 3.66
2075 2187 1.672881 ACTTTTGACTGACTGCACAGC 59.327 47.619 4.32 0.00 41.06 4.40
2103 2222 8.690203 TTCCAAGTTTTCAACAGAGATAATGA 57.310 30.769 0.00 0.00 0.00 2.57
2106 2225 7.972277 CCAAGTTTTCAACAGAGATAATGATGG 59.028 37.037 0.00 0.00 0.00 3.51
2107 2226 8.517878 CAAGTTTTCAACAGAGATAATGATGGT 58.482 33.333 0.00 0.00 0.00 3.55
2108 2227 8.048534 AGTTTTCAACAGAGATAATGATGGTG 57.951 34.615 0.00 0.00 0.00 4.17
2110 2229 6.990341 TTCAACAGAGATAATGATGGTGTG 57.010 37.500 0.00 0.00 32.19 3.82
2111 2230 6.053632 TCAACAGAGATAATGATGGTGTGT 57.946 37.500 0.00 0.00 32.19 3.72
2114 2233 4.637534 ACAGAGATAATGATGGTGTGTTGC 59.362 41.667 0.00 0.00 0.00 4.17
2117 2236 4.847198 AGATAATGATGGTGTGTTGCTGA 58.153 39.130 0.00 0.00 0.00 4.26
2118 2237 4.637534 AGATAATGATGGTGTGTTGCTGAC 59.362 41.667 0.00 0.00 0.00 3.51
2120 2239 2.346766 TGATGGTGTGTTGCTGACTT 57.653 45.000 0.00 0.00 0.00 3.01
2123 2242 0.394216 TGGTGTGTTGCTGACTTGCT 60.394 50.000 0.00 0.00 0.00 3.91
2124 2243 0.029834 GGTGTGTTGCTGACTTGCTG 59.970 55.000 0.00 0.00 0.00 4.41
2206 2329 5.490139 CAGAAATCTGCCATAATCGTTGT 57.510 39.130 0.00 0.00 37.15 3.32
2207 2330 5.883661 CAGAAATCTGCCATAATCGTTGTT 58.116 37.500 0.00 0.00 37.15 2.83
2208 2331 5.967674 CAGAAATCTGCCATAATCGTTGTTC 59.032 40.000 0.00 0.00 37.15 3.18
2424 2557 9.693739 TTTGCCTTATGGATGAAGTATTCTTAA 57.306 29.630 0.00 0.00 40.17 1.85
2672 2805 5.242393 CCATGAGTTCAACAGGAGATTGTTT 59.758 40.000 0.00 0.00 39.17 2.83
2770 2903 7.881232 CAGGTATTGGTTCTCTAAGGTTACAAA 59.119 37.037 0.00 0.00 0.00 2.83
2873 3006 7.792374 TCTGATTGCTGTCTCCAATATAAAC 57.208 36.000 0.00 0.00 33.34 2.01
2957 3090 0.663568 CAGTCCTCGAAAACGCTCGT 60.664 55.000 2.62 0.00 39.84 4.18
2985 3118 0.461339 TAAGGTTCGGAATCGCTGCC 60.461 55.000 0.00 0.00 36.13 4.85
3016 3150 4.824479 TTAACTGATGCTCCTGTGATCA 57.176 40.909 0.00 0.00 0.00 2.92
3202 3336 0.398318 GGCAAGTCCCTGTCAAGAGT 59.602 55.000 0.00 0.00 0.00 3.24
3354 3488 0.449388 GAATGCAAGCCGTCTCCAAG 59.551 55.000 0.00 0.00 0.00 3.61
3360 3494 3.435186 GCCGTCTCCAAGCCTTGC 61.435 66.667 0.00 0.00 0.00 4.01
3363 3497 1.377725 CGTCTCCAAGCCTTGCCAT 60.378 57.895 0.00 0.00 0.00 4.40
3399 3533 0.319900 GCGAAGACAGAGGCAGAACA 60.320 55.000 0.00 0.00 0.00 3.18
3404 3538 4.023707 CGAAGACAGAGGCAGAACAAAAAT 60.024 41.667 0.00 0.00 0.00 1.82
3405 3539 5.506317 CGAAGACAGAGGCAGAACAAAAATT 60.506 40.000 0.00 0.00 0.00 1.82
3500 3634 3.247442 CTCACCATTTCGTAGCGTTACA 58.753 45.455 10.16 0.00 0.00 2.41
3550 3688 2.957680 TGTGGTCGTGTTACCTCTGTAA 59.042 45.455 0.00 0.00 40.44 2.41
3573 3711 0.251165 TTGTGCTAGGTTGCCCCTTC 60.251 55.000 0.00 0.00 42.73 3.46
3625 3763 1.538075 TGTGTCAGTAATGCGACTCGA 59.462 47.619 1.63 0.00 33.18 4.04
3626 3764 2.163613 TGTGTCAGTAATGCGACTCGAT 59.836 45.455 1.63 0.00 33.18 3.59
3670 3808 0.884704 CGGGGCGAAGGACCATTATG 60.885 60.000 0.00 0.00 46.61 1.90
3690 3828 3.904571 TGTTTTGTGATGATGCAGAAGC 58.095 40.909 0.00 0.00 42.57 3.86
3703 3841 2.099592 TGCAGAAGCTGTGAAAACCTTG 59.900 45.455 0.43 0.00 42.74 3.61
3709 3847 3.290710 AGCTGTGAAAACCTTGTCATGT 58.709 40.909 0.00 0.00 0.00 3.21
3716 3868 4.809958 TGAAAACCTTGTCATGTTGCATTG 59.190 37.500 0.00 0.00 0.00 2.82
3731 3883 3.788333 GCATTGTGCATCATTACCTGT 57.212 42.857 0.00 0.00 44.26 4.00
3732 3884 3.441163 GCATTGTGCATCATTACCTGTG 58.559 45.455 0.00 0.00 44.26 3.66
3817 3969 0.912486 GAGGCCCAGTGACCTAACAT 59.088 55.000 0.00 0.00 36.05 2.71
3903 4055 0.759436 ACTTGGTCGGTCTGTCTGGT 60.759 55.000 0.00 0.00 0.00 4.00
3918 4070 1.144708 TCTGGTTTCATGCCAAGGACA 59.855 47.619 0.00 0.00 35.32 4.02
3927 4079 3.758023 TCATGCCAAGGACATGTAAACTG 59.242 43.478 17.15 0.00 44.26 3.16
3963 4115 2.119801 ACACAGGATGCATCTTCACC 57.880 50.000 25.28 9.91 42.53 4.02
4002 4162 6.047870 GCAGGATGAATATGCAGAGGTATAG 58.952 44.000 0.00 0.00 39.69 1.31
4027 4187 7.815068 AGCTTGATTATGTTATATCCAGTCGAC 59.185 37.037 7.70 7.70 0.00 4.20
4075 4398 8.961293 TCGTAGAATAGGATAAAAAGGGGATA 57.039 34.615 0.00 0.00 29.31 2.59
4097 4420 7.492994 GGATAAGAAATATTGGATACTCGAGCC 59.507 40.741 13.61 6.47 37.61 4.70
4101 4424 0.249489 ATTGGATACTCGAGCCGTGC 60.249 55.000 13.61 4.58 35.82 5.34
4103 4426 1.364171 GGATACTCGAGCCGTGCAT 59.636 57.895 13.61 0.00 0.00 3.96
4108 4431 1.029681 ACTCGAGCCGTGCATATGTA 58.970 50.000 13.61 0.00 0.00 2.29
4117 4440 1.663643 CGTGCATATGTAAGGCAACGT 59.336 47.619 4.29 0.00 46.39 3.99
4129 4452 2.953821 CAACGTGTGGCATGGACC 59.046 61.111 0.00 0.00 0.00 4.46
4130 4453 1.896183 CAACGTGTGGCATGGACCA 60.896 57.895 0.00 0.00 37.38 4.02
4131 4454 1.074775 AACGTGTGGCATGGACCAT 59.925 52.632 0.00 0.00 43.01 3.55
4172 4495 5.277876 GGCATCTCATCATGATCAAGAACAC 60.278 44.000 17.17 11.25 0.00 3.32
4269 4593 1.770324 CTCCAGCCCTTTTCCAGGT 59.230 57.895 0.00 0.00 42.02 4.00
4278 4602 2.027192 CCCTTTTCCAGGTCTGATTCGA 60.027 50.000 0.00 0.00 42.02 3.71
4279 4603 3.370953 CCCTTTTCCAGGTCTGATTCGAT 60.371 47.826 0.00 0.00 42.02 3.59
4283 4607 3.808466 TCCAGGTCTGATTCGATCTTG 57.192 47.619 0.00 0.00 0.00 3.02
4298 4622 6.020971 TCGATCTTGTTTGCTCTAGTAACA 57.979 37.500 0.00 0.00 0.00 2.41
4299 4623 6.093404 TCGATCTTGTTTGCTCTAGTAACAG 58.907 40.000 0.00 0.00 33.74 3.16
4300 4624 6.072119 TCGATCTTGTTTGCTCTAGTAACAGA 60.072 38.462 0.00 0.00 33.74 3.41
4301 4625 6.034044 CGATCTTGTTTGCTCTAGTAACAGAC 59.966 42.308 0.00 0.00 33.74 3.51
4302 4626 5.539048 TCTTGTTTGCTCTAGTAACAGACC 58.461 41.667 0.00 0.00 33.74 3.85
4303 4627 4.948341 TGTTTGCTCTAGTAACAGACCA 57.052 40.909 0.00 0.00 0.00 4.02
4304 4628 4.628074 TGTTTGCTCTAGTAACAGACCAC 58.372 43.478 0.00 0.00 0.00 4.16
4305 4629 3.570926 TTGCTCTAGTAACAGACCACG 57.429 47.619 0.00 0.00 0.00 4.94
4306 4630 2.511659 TGCTCTAGTAACAGACCACGT 58.488 47.619 0.00 0.00 0.00 4.49
4307 4631 2.228103 TGCTCTAGTAACAGACCACGTG 59.772 50.000 9.08 9.08 0.00 4.49
4308 4632 2.486982 GCTCTAGTAACAGACCACGTGA 59.513 50.000 19.30 0.00 0.00 4.35
4309 4633 3.426426 GCTCTAGTAACAGACCACGTGAG 60.426 52.174 19.30 9.89 0.00 3.51
4310 4634 2.486982 TCTAGTAACAGACCACGTGAGC 59.513 50.000 19.30 8.39 0.00 4.26
4311 4635 1.329256 AGTAACAGACCACGTGAGCT 58.671 50.000 19.30 10.81 0.00 4.09
4312 4636 1.269998 AGTAACAGACCACGTGAGCTC 59.730 52.381 19.30 6.82 0.00 4.09
4313 4637 0.601558 TAACAGACCACGTGAGCTCC 59.398 55.000 19.30 1.40 0.00 4.70
4314 4638 2.126307 CAGACCACGTGAGCTCCG 60.126 66.667 19.30 19.02 0.00 4.63
4315 4639 3.374402 AGACCACGTGAGCTCCGG 61.374 66.667 19.30 15.40 0.00 5.14
4316 4640 3.681835 GACCACGTGAGCTCCGGT 61.682 66.667 19.30 17.97 0.00 5.28
4317 4641 3.916392 GACCACGTGAGCTCCGGTG 62.916 68.421 19.30 22.00 0.00 4.94
4318 4642 3.991051 CCACGTGAGCTCCGGTGT 61.991 66.667 24.25 11.09 0.00 4.16
4319 4643 2.734723 CACGTGAGCTCCGGTGTG 60.735 66.667 22.76 16.27 0.00 3.82
4320 4644 3.991051 ACGTGAGCTCCGGTGTGG 61.991 66.667 22.76 4.46 40.09 4.17
4328 4652 3.466881 TCCGGTGTGGAGAAGGTG 58.533 61.111 0.00 0.00 43.74 4.00
4329 4653 1.458777 TCCGGTGTGGAGAAGGTGT 60.459 57.895 0.00 0.00 43.74 4.16
4330 4654 0.178955 TCCGGTGTGGAGAAGGTGTA 60.179 55.000 0.00 0.00 43.74 2.90
4331 4655 0.682852 CCGGTGTGGAGAAGGTGTAA 59.317 55.000 0.00 0.00 42.00 2.41
4332 4656 1.337823 CCGGTGTGGAGAAGGTGTAAG 60.338 57.143 0.00 0.00 42.00 2.34
4333 4657 1.616865 CGGTGTGGAGAAGGTGTAAGA 59.383 52.381 0.00 0.00 0.00 2.10
4334 4658 2.036733 CGGTGTGGAGAAGGTGTAAGAA 59.963 50.000 0.00 0.00 0.00 2.52
4335 4659 3.493699 CGGTGTGGAGAAGGTGTAAGAAA 60.494 47.826 0.00 0.00 0.00 2.52
4336 4660 3.813724 GGTGTGGAGAAGGTGTAAGAAAC 59.186 47.826 0.00 0.00 0.00 2.78
4337 4661 4.444449 GGTGTGGAGAAGGTGTAAGAAACT 60.444 45.833 0.00 0.00 0.00 2.66
4338 4662 4.511826 GTGTGGAGAAGGTGTAAGAAACTG 59.488 45.833 0.00 0.00 0.00 3.16
4339 4663 4.065789 GTGGAGAAGGTGTAAGAAACTGG 58.934 47.826 0.00 0.00 0.00 4.00
4340 4664 3.714798 TGGAGAAGGTGTAAGAAACTGGT 59.285 43.478 0.00 0.00 0.00 4.00
4341 4665 4.202326 TGGAGAAGGTGTAAGAAACTGGTC 60.202 45.833 0.00 0.00 0.00 4.02
4342 4666 4.040584 GGAGAAGGTGTAAGAAACTGGTCT 59.959 45.833 0.00 0.00 0.00 3.85
4343 4667 5.454897 GGAGAAGGTGTAAGAAACTGGTCTT 60.455 44.000 2.14 2.14 40.89 3.01
4344 4668 6.002653 AGAAGGTGTAAGAAACTGGTCTTT 57.997 37.500 1.86 0.00 38.75 2.52
4345 4669 6.424032 AGAAGGTGTAAGAAACTGGTCTTTT 58.576 36.000 1.86 0.00 38.75 2.27
4346 4670 6.318900 AGAAGGTGTAAGAAACTGGTCTTTTG 59.681 38.462 1.86 0.00 38.75 2.44
4347 4671 5.506708 AGGTGTAAGAAACTGGTCTTTTGT 58.493 37.500 1.86 0.00 38.75 2.83
4348 4672 5.949952 AGGTGTAAGAAACTGGTCTTTTGTT 59.050 36.000 1.86 0.00 38.75 2.83
4349 4673 6.436218 AGGTGTAAGAAACTGGTCTTTTGTTT 59.564 34.615 1.86 0.00 38.75 2.83
4350 4674 6.750501 GGTGTAAGAAACTGGTCTTTTGTTTC 59.249 38.462 9.07 9.07 45.59 2.78
4351 4675 7.309920 GTGTAAGAAACTGGTCTTTTGTTTCA 58.690 34.615 16.57 0.00 46.82 2.69
4352 4676 7.810759 GTGTAAGAAACTGGTCTTTTGTTTCAA 59.189 33.333 16.57 5.23 46.82 2.69
4353 4677 8.026607 TGTAAGAAACTGGTCTTTTGTTTCAAG 58.973 33.333 16.57 0.00 46.82 3.02
4354 4678 6.590234 AGAAACTGGTCTTTTGTTTCAAGT 57.410 33.333 16.57 0.00 46.82 3.16
4355 4679 7.696992 AGAAACTGGTCTTTTGTTTCAAGTA 57.303 32.000 16.57 0.00 46.82 2.24
4356 4680 7.535997 AGAAACTGGTCTTTTGTTTCAAGTAC 58.464 34.615 16.57 0.00 46.82 2.73
4357 4681 5.830000 ACTGGTCTTTTGTTTCAAGTACC 57.170 39.130 0.00 0.00 0.00 3.34
4358 4682 5.506708 ACTGGTCTTTTGTTTCAAGTACCT 58.493 37.500 0.00 0.00 0.00 3.08
4359 4683 5.949952 ACTGGTCTTTTGTTTCAAGTACCTT 59.050 36.000 0.00 0.00 0.00 3.50
4360 4684 6.095021 ACTGGTCTTTTGTTTCAAGTACCTTC 59.905 38.462 0.00 0.00 0.00 3.46
4361 4685 6.184789 TGGTCTTTTGTTTCAAGTACCTTCT 58.815 36.000 0.00 0.00 0.00 2.85
4362 4686 7.340256 TGGTCTTTTGTTTCAAGTACCTTCTA 58.660 34.615 0.00 0.00 0.00 2.10
4363 4687 7.830201 TGGTCTTTTGTTTCAAGTACCTTCTAA 59.170 33.333 0.00 0.00 0.00 2.10
4364 4688 8.847196 GGTCTTTTGTTTCAAGTACCTTCTAAT 58.153 33.333 0.00 0.00 0.00 1.73
4369 4693 8.865590 TTGTTTCAAGTACCTTCTAATTTTGC 57.134 30.769 0.00 0.00 0.00 3.68
4370 4694 8.001881 TGTTTCAAGTACCTTCTAATTTTGCA 57.998 30.769 0.00 0.00 0.00 4.08
4371 4695 8.470805 TGTTTCAAGTACCTTCTAATTTTGCAA 58.529 29.630 0.00 0.00 0.00 4.08
4372 4696 8.752254 GTTTCAAGTACCTTCTAATTTTGCAAC 58.248 33.333 0.00 0.00 0.00 4.17
4373 4697 6.664515 TCAAGTACCTTCTAATTTTGCAACG 58.335 36.000 0.00 0.00 0.00 4.10
4374 4698 6.261381 TCAAGTACCTTCTAATTTTGCAACGT 59.739 34.615 0.00 0.00 0.00 3.99
4375 4699 6.628919 AGTACCTTCTAATTTTGCAACGTT 57.371 33.333 0.00 0.00 0.00 3.99
4376 4700 7.034685 AGTACCTTCTAATTTTGCAACGTTT 57.965 32.000 0.00 0.00 0.00 3.60
4377 4701 7.136772 AGTACCTTCTAATTTTGCAACGTTTC 58.863 34.615 0.00 0.00 0.00 2.78
4378 4702 6.144078 ACCTTCTAATTTTGCAACGTTTCT 57.856 33.333 0.00 0.00 0.00 2.52
4379 4703 6.569780 ACCTTCTAATTTTGCAACGTTTCTT 58.430 32.000 0.00 0.00 0.00 2.52
4380 4704 7.039270 ACCTTCTAATTTTGCAACGTTTCTTT 58.961 30.769 0.00 0.00 0.00 2.52
4381 4705 7.547722 ACCTTCTAATTTTGCAACGTTTCTTTT 59.452 29.630 0.00 0.00 0.00 2.27
4382 4706 8.055986 CCTTCTAATTTTGCAACGTTTCTTTTC 58.944 33.333 0.00 0.00 0.00 2.29
4383 4707 8.696410 TTCTAATTTTGCAACGTTTCTTTTCT 57.304 26.923 0.00 0.00 0.00 2.52
4384 4708 8.114359 TCTAATTTTGCAACGTTTCTTTTCTG 57.886 30.769 0.00 0.00 0.00 3.02
4385 4709 6.720012 AATTTTGCAACGTTTCTTTTCTGT 57.280 29.167 0.00 0.00 0.00 3.41
4386 4710 5.508124 TTTTGCAACGTTTCTTTTCTGTG 57.492 34.783 0.00 0.00 0.00 3.66
4387 4711 3.143807 TGCAACGTTTCTTTTCTGTGG 57.856 42.857 0.00 0.00 0.00 4.17
4388 4712 2.490115 TGCAACGTTTCTTTTCTGTGGT 59.510 40.909 0.00 0.00 0.00 4.16
4389 4713 2.851824 GCAACGTTTCTTTTCTGTGGTG 59.148 45.455 0.00 0.00 0.00 4.17
4390 4714 3.434637 CAACGTTTCTTTTCTGTGGTGG 58.565 45.455 0.00 0.00 0.00 4.61
4391 4715 2.993937 ACGTTTCTTTTCTGTGGTGGA 58.006 42.857 0.00 0.00 0.00 4.02
4392 4716 2.943033 ACGTTTCTTTTCTGTGGTGGAG 59.057 45.455 0.00 0.00 0.00 3.86
4393 4717 2.290641 CGTTTCTTTTCTGTGGTGGAGG 59.709 50.000 0.00 0.00 0.00 4.30
4397 4721 0.923358 TTTTCTGTGGTGGAGGGTGT 59.077 50.000 0.00 0.00 0.00 4.16
4411 4735 4.399934 TGGAGGGTGTTGAAAGTTTGTAAC 59.600 41.667 0.00 0.00 0.00 2.50
4416 4740 7.217906 AGGGTGTTGAAAGTTTGTAACAAAAA 58.782 30.769 13.61 0.00 35.12 1.94
4431 4755 7.308435 TGTAACAAAAATTTTGGGCTTGTTTG 58.692 30.769 20.79 7.35 39.97 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 8.831715 AACATATTTGAAATTCCGAGCTTTTT 57.168 26.923 0.00 0.00 0.00 1.94
97 98 8.087750 TGAACATATTTGAAATTCCGAGCTTTT 58.912 29.630 0.00 0.00 0.00 2.27
98 99 7.601856 TGAACATATTTGAAATTCCGAGCTTT 58.398 30.769 0.00 0.00 0.00 3.51
99 100 7.156876 TGAACATATTTGAAATTCCGAGCTT 57.843 32.000 0.00 0.00 0.00 3.74
100 101 6.757897 TGAACATATTTGAAATTCCGAGCT 57.242 33.333 0.00 0.00 0.00 4.09
101 102 7.810766 TTTGAACATATTTGAAATTCCGAGC 57.189 32.000 0.00 0.00 0.00 5.03
210 211 9.360093 ACAAAACTCGAAAAATATGAACACAAA 57.640 25.926 0.00 0.00 0.00 2.83
211 212 8.918961 ACAAAACTCGAAAAATATGAACACAA 57.081 26.923 0.00 0.00 0.00 3.33
212 213 8.918961 AACAAAACTCGAAAAATATGAACACA 57.081 26.923 0.00 0.00 0.00 3.72
213 214 9.015577 TGAACAAAACTCGAAAAATATGAACAC 57.984 29.630 0.00 0.00 0.00 3.32
214 215 9.743057 ATGAACAAAACTCGAAAAATATGAACA 57.257 25.926 0.00 0.00 0.00 3.18
216 217 9.958234 TGATGAACAAAACTCGAAAAATATGAA 57.042 25.926 0.00 0.00 0.00 2.57
220 221 9.112789 CGAATGATGAACAAAACTCGAAAAATA 57.887 29.630 0.00 0.00 0.00 1.40
221 222 7.860373 TCGAATGATGAACAAAACTCGAAAAAT 59.140 29.630 0.00 0.00 31.65 1.82
222 223 7.190191 TCGAATGATGAACAAAACTCGAAAAA 58.810 30.769 0.00 0.00 31.65 1.94
223 224 6.720343 TCGAATGATGAACAAAACTCGAAAA 58.280 32.000 0.00 0.00 31.65 2.29
224 225 6.293713 TCGAATGATGAACAAAACTCGAAA 57.706 33.333 0.00 0.00 31.65 3.46
225 226 5.915812 TCGAATGATGAACAAAACTCGAA 57.084 34.783 0.00 0.00 31.65 3.71
226 227 5.915812 TTCGAATGATGAACAAAACTCGA 57.084 34.783 0.00 0.00 32.21 4.04
227 228 6.413526 TGTTTTCGAATGATGAACAAAACTCG 59.586 34.615 9.34 0.00 31.55 4.18
228 229 7.678194 TGTTTTCGAATGATGAACAAAACTC 57.322 32.000 9.34 0.00 31.55 3.01
229 230 8.647143 ATTGTTTTCGAATGATGAACAAAACT 57.353 26.923 22.09 9.14 40.62 2.66
230 231 9.146270 CAATTGTTTTCGAATGATGAACAAAAC 57.854 29.630 22.09 10.77 40.62 2.43
231 232 8.877779 ACAATTGTTTTCGAATGATGAACAAAA 58.122 25.926 22.09 7.53 40.62 2.44
232 233 8.417780 ACAATTGTTTTCGAATGATGAACAAA 57.582 26.923 22.09 10.90 40.62 2.83
233 234 8.417780 AACAATTGTTTTCGAATGATGAACAA 57.582 26.923 21.06 21.06 41.06 2.83
234 235 8.326713 CAAACAATTGTTTTCGAATGATGAACA 58.673 29.630 29.42 7.99 45.07 3.18
235 236 8.538856 TCAAACAATTGTTTTCGAATGATGAAC 58.461 29.630 29.42 0.21 45.07 3.18
236 237 8.640091 TCAAACAATTGTTTTCGAATGATGAA 57.360 26.923 29.42 4.13 45.07 2.57
237 238 8.640091 TTCAAACAATTGTTTTCGAATGATGA 57.360 26.923 29.42 19.45 45.07 2.92
238 239 9.866936 ATTTCAAACAATTGTTTTCGAATGATG 57.133 25.926 29.42 17.72 45.07 3.07
240 241 9.913451 GAATTTCAAACAATTGTTTTCGAATGA 57.087 25.926 29.42 21.32 45.07 2.57
241 242 8.871603 CGAATTTCAAACAATTGTTTTCGAATG 58.128 29.630 31.94 22.62 45.07 2.67
242 243 8.812329 TCGAATTTCAAACAATTGTTTTCGAAT 58.188 25.926 33.75 26.96 45.07 3.34
243 244 8.174484 TCGAATTTCAAACAATTGTTTTCGAA 57.826 26.923 33.75 28.67 45.07 3.71
244 245 7.742019 TCGAATTTCAAACAATTGTTTTCGA 57.258 28.000 32.98 32.98 45.07 3.71
245 246 8.798640 TTTCGAATTTCAAACAATTGTTTTCG 57.201 26.923 30.80 30.80 45.07 3.46
250 251 9.701355 GAACAATTTCGAATTTCAAACAATTGT 57.299 25.926 4.92 4.92 42.39 2.71
251 252 9.699985 TGAACAATTTCGAATTTCAAACAATTG 57.300 25.926 3.24 3.24 36.59 2.32
252 253 9.919348 CTGAACAATTTCGAATTTCAAACAATT 57.081 25.926 0.00 0.00 34.04 2.32
253 254 8.063630 GCTGAACAATTTCGAATTTCAAACAAT 58.936 29.630 0.00 0.00 34.04 2.71
254 255 7.063898 TGCTGAACAATTTCGAATTTCAAACAA 59.936 29.630 0.00 0.00 34.04 2.83
255 256 6.533012 TGCTGAACAATTTCGAATTTCAAACA 59.467 30.769 0.00 5.03 34.04 2.83
256 257 6.932051 TGCTGAACAATTTCGAATTTCAAAC 58.068 32.000 0.00 2.77 34.04 2.93
257 258 7.224362 ACATGCTGAACAATTTCGAATTTCAAA 59.776 29.630 0.00 0.00 34.04 2.69
258 259 6.700960 ACATGCTGAACAATTTCGAATTTCAA 59.299 30.769 0.00 0.00 34.04 2.69
259 260 6.215121 ACATGCTGAACAATTTCGAATTTCA 58.785 32.000 0.00 5.39 34.04 2.69
260 261 6.583806 AGACATGCTGAACAATTTCGAATTTC 59.416 34.615 0.00 0.75 34.04 2.17
261 262 6.449698 AGACATGCTGAACAATTTCGAATTT 58.550 32.000 0.00 0.00 34.04 1.82
262 263 6.017400 AGACATGCTGAACAATTTCGAATT 57.983 33.333 0.00 0.00 34.04 2.17
263 264 5.633830 AGACATGCTGAACAATTTCGAAT 57.366 34.783 0.00 0.00 34.04 3.34
264 265 6.552859 TTAGACATGCTGAACAATTTCGAA 57.447 33.333 0.00 0.00 34.04 3.71
265 266 6.017523 TGTTTAGACATGCTGAACAATTTCGA 60.018 34.615 18.32 0.00 46.31 3.71
266 267 6.142139 TGTTTAGACATGCTGAACAATTTCG 58.858 36.000 18.32 0.00 46.31 3.46
272 273 5.361135 CATGTGTTTAGACATGCTGAACA 57.639 39.130 17.34 17.34 46.88 3.18
280 281 1.094785 GCCCGCATGTGTTTAGACAT 58.905 50.000 5.38 0.00 38.23 3.06
281 282 0.036164 AGCCCGCATGTGTTTAGACA 59.964 50.000 5.38 0.00 0.00 3.41
282 283 0.447801 CAGCCCGCATGTGTTTAGAC 59.552 55.000 5.38 0.00 0.00 2.59
283 284 1.305219 GCAGCCCGCATGTGTTTAGA 61.305 55.000 5.38 0.00 41.79 2.10
284 285 1.137404 GCAGCCCGCATGTGTTTAG 59.863 57.895 5.38 0.00 41.79 1.85
285 286 2.339556 GGCAGCCCGCATGTGTTTA 61.340 57.895 0.00 0.00 45.17 2.01
286 287 3.683937 GGCAGCCCGCATGTGTTT 61.684 61.111 0.00 0.00 45.17 2.83
287 288 4.972733 TGGCAGCCCGCATGTGTT 62.973 61.111 9.64 0.00 45.17 3.32
288 289 4.972733 TTGGCAGCCCGCATGTGT 62.973 61.111 9.64 0.00 45.17 3.72
289 290 3.682885 TTTGGCAGCCCGCATGTG 61.683 61.111 9.64 0.00 45.17 3.21
290 291 3.683937 GTTTGGCAGCCCGCATGT 61.684 61.111 9.64 0.00 45.17 3.21
291 292 2.712325 TTTGTTTGGCAGCCCGCATG 62.712 55.000 9.64 0.00 45.17 4.06
292 293 2.438951 CTTTGTTTGGCAGCCCGCAT 62.439 55.000 9.64 0.00 45.17 4.73
293 294 3.149338 CTTTGTTTGGCAGCCCGCA 62.149 57.895 9.64 1.93 45.17 5.69
294 295 2.356194 CTTTGTTTGGCAGCCCGC 60.356 61.111 9.64 0.00 41.28 6.13
295 296 1.007387 GACTTTGTTTGGCAGCCCG 60.007 57.895 9.64 0.00 0.00 6.13
296 297 0.315251 GAGACTTTGTTTGGCAGCCC 59.685 55.000 9.64 0.00 0.00 5.19
297 298 1.000938 CTGAGACTTTGTTTGGCAGCC 60.001 52.381 3.66 3.66 0.00 4.85
298 299 1.601412 GCTGAGACTTTGTTTGGCAGC 60.601 52.381 0.00 0.00 40.15 5.25
299 300 1.952296 AGCTGAGACTTTGTTTGGCAG 59.048 47.619 0.00 0.00 0.00 4.85
300 301 1.949525 GAGCTGAGACTTTGTTTGGCA 59.050 47.619 0.00 0.00 0.00 4.92
301 302 1.949525 TGAGCTGAGACTTTGTTTGGC 59.050 47.619 0.00 0.00 0.00 4.52
302 303 2.031333 GCTGAGCTGAGACTTTGTTTGG 60.031 50.000 3.62 0.00 0.00 3.28
303 304 2.615447 TGCTGAGCTGAGACTTTGTTTG 59.385 45.455 3.62 0.00 0.00 2.93
304 305 2.923121 TGCTGAGCTGAGACTTTGTTT 58.077 42.857 3.62 0.00 0.00 2.83
305 306 2.627515 TGCTGAGCTGAGACTTTGTT 57.372 45.000 3.62 0.00 0.00 2.83
306 307 2.224475 ACATGCTGAGCTGAGACTTTGT 60.224 45.455 3.62 0.00 0.00 2.83
307 308 2.415857 GACATGCTGAGCTGAGACTTTG 59.584 50.000 3.62 0.00 0.00 2.77
308 309 2.302445 AGACATGCTGAGCTGAGACTTT 59.698 45.455 3.62 0.00 0.00 2.66
309 310 1.901159 AGACATGCTGAGCTGAGACTT 59.099 47.619 3.62 0.00 0.00 3.01
310 311 1.477700 GAGACATGCTGAGCTGAGACT 59.522 52.381 3.62 1.03 0.00 3.24
311 312 1.204231 TGAGACATGCTGAGCTGAGAC 59.796 52.381 3.62 0.00 0.00 3.36
312 313 1.477295 CTGAGACATGCTGAGCTGAGA 59.523 52.381 3.62 0.00 0.00 3.27
313 314 1.929230 CTGAGACATGCTGAGCTGAG 58.071 55.000 5.83 0.00 0.00 3.35
318 319 0.810426 ATGCGCTGAGACATGCTGAG 60.810 55.000 9.73 0.00 0.00 3.35
319 320 0.461135 TATGCGCTGAGACATGCTGA 59.539 50.000 9.73 0.00 0.00 4.26
320 321 0.580578 GTATGCGCTGAGACATGCTG 59.419 55.000 9.73 0.00 0.00 4.41
321 322 0.176449 TGTATGCGCTGAGACATGCT 59.824 50.000 9.73 0.00 31.11 3.79
322 323 1.194098 GATGTATGCGCTGAGACATGC 59.806 52.381 12.11 0.00 32.75 4.06
323 324 1.454653 CGATGTATGCGCTGAGACATG 59.545 52.381 12.11 0.00 32.75 3.21
324 325 1.775869 CGATGTATGCGCTGAGACAT 58.224 50.000 9.73 8.48 35.26 3.06
325 326 3.256620 CGATGTATGCGCTGAGACA 57.743 52.632 9.73 2.73 0.00 3.41
333 334 0.589729 GTTTGGCAGCGATGTATGCG 60.590 55.000 1.22 0.00 43.49 4.73
334 335 0.451383 TGTTTGGCAGCGATGTATGC 59.549 50.000 1.22 0.00 41.80 3.14
335 336 2.095314 TGTTGTTTGGCAGCGATGTATG 60.095 45.455 1.22 0.00 0.00 2.39
336 337 2.158559 TGTTGTTTGGCAGCGATGTAT 58.841 42.857 1.22 0.00 0.00 2.29
337 338 1.535028 CTGTTGTTTGGCAGCGATGTA 59.465 47.619 1.22 0.00 0.00 2.29
338 339 0.311790 CTGTTGTTTGGCAGCGATGT 59.688 50.000 1.22 0.00 0.00 3.06
339 340 1.005294 GCTGTTGTTTGGCAGCGATG 61.005 55.000 0.00 0.00 46.67 3.84
340 341 1.286880 GCTGTTGTTTGGCAGCGAT 59.713 52.632 0.70 0.00 46.67 4.58
341 342 2.721231 GCTGTTGTTTGGCAGCGA 59.279 55.556 0.70 0.00 46.67 4.93
344 345 1.563111 CAGTTGCTGTTGTTTGGCAG 58.437 50.000 0.00 0.00 37.28 4.85
345 346 0.459934 GCAGTTGCTGTTGTTTGGCA 60.460 50.000 0.00 0.00 38.21 4.92
346 347 0.459934 TGCAGTTGCTGTTGTTTGGC 60.460 50.000 5.62 0.00 42.66 4.52
347 348 1.862201 CATGCAGTTGCTGTTGTTTGG 59.138 47.619 5.62 0.00 42.66 3.28
348 349 1.862201 CCATGCAGTTGCTGTTGTTTG 59.138 47.619 5.62 0.00 42.66 2.93
349 350 1.755959 TCCATGCAGTTGCTGTTGTTT 59.244 42.857 5.62 0.00 42.66 2.83
350 351 1.067516 GTCCATGCAGTTGCTGTTGTT 59.932 47.619 5.62 0.00 42.66 2.83
351 352 0.670162 GTCCATGCAGTTGCTGTTGT 59.330 50.000 5.62 0.00 42.66 3.32
352 353 0.956633 AGTCCATGCAGTTGCTGTTG 59.043 50.000 5.62 1.27 42.66 3.33
353 354 1.242076 GAGTCCATGCAGTTGCTGTT 58.758 50.000 5.62 0.00 42.66 3.16
354 355 0.109153 TGAGTCCATGCAGTTGCTGT 59.891 50.000 5.62 0.00 42.66 4.40
355 356 0.803117 CTGAGTCCATGCAGTTGCTG 59.197 55.000 5.62 1.77 42.66 4.41
356 357 0.959372 GCTGAGTCCATGCAGTTGCT 60.959 55.000 5.62 0.00 42.66 3.91
357 358 1.239296 TGCTGAGTCCATGCAGTTGC 61.239 55.000 0.00 0.00 42.50 4.17
358 359 1.132453 CATGCTGAGTCCATGCAGTTG 59.868 52.381 0.00 0.00 40.18 3.16
359 360 1.271762 ACATGCTGAGTCCATGCAGTT 60.272 47.619 8.73 0.00 42.89 3.16
360 361 0.327259 ACATGCTGAGTCCATGCAGT 59.673 50.000 8.73 4.95 42.89 4.40
361 362 1.015109 GACATGCTGAGTCCATGCAG 58.985 55.000 8.73 0.00 42.89 4.41
362 363 0.616891 AGACATGCTGAGTCCATGCA 59.383 50.000 8.73 7.05 42.89 3.96
363 364 2.208431 GTAGACATGCTGAGTCCATGC 58.792 52.381 8.73 1.97 42.89 4.06
364 365 3.118847 AGTGTAGACATGCTGAGTCCATG 60.119 47.826 7.58 7.58 44.28 3.66
365 366 3.102972 AGTGTAGACATGCTGAGTCCAT 58.897 45.455 0.00 0.00 36.68 3.41
366 367 2.529632 AGTGTAGACATGCTGAGTCCA 58.470 47.619 0.00 0.00 36.68 4.02
367 368 3.601443 AAGTGTAGACATGCTGAGTCC 57.399 47.619 0.00 0.00 36.68 3.85
368 369 4.109050 GCTAAGTGTAGACATGCTGAGTC 58.891 47.826 0.00 0.00 36.26 3.36
369 370 3.511540 TGCTAAGTGTAGACATGCTGAGT 59.488 43.478 0.00 0.00 0.00 3.41
370 371 4.115401 TGCTAAGTGTAGACATGCTGAG 57.885 45.455 0.00 0.00 0.00 3.35
371 372 4.081476 ACATGCTAAGTGTAGACATGCTGA 60.081 41.667 13.37 0.00 41.09 4.26
372 373 4.186926 ACATGCTAAGTGTAGACATGCTG 58.813 43.478 13.37 0.00 41.09 4.41
373 374 4.478206 ACATGCTAAGTGTAGACATGCT 57.522 40.909 13.37 0.00 41.09 3.79
374 375 5.985530 TCATACATGCTAAGTGTAGACATGC 59.014 40.000 13.37 0.00 41.09 4.06
375 376 7.428826 TCTCATACATGCTAAGTGTAGACATG 58.571 38.462 0.00 12.52 42.00 3.21
376 377 7.255766 CCTCTCATACATGCTAAGTGTAGACAT 60.256 40.741 0.00 0.00 35.69 3.06
377 378 6.039829 CCTCTCATACATGCTAAGTGTAGACA 59.960 42.308 0.00 0.00 35.69 3.41
378 379 6.263392 TCCTCTCATACATGCTAAGTGTAGAC 59.737 42.308 0.00 0.00 35.69 2.59
379 380 6.365520 TCCTCTCATACATGCTAAGTGTAGA 58.634 40.000 0.00 0.00 35.69 2.59
380 381 6.488344 TCTCCTCTCATACATGCTAAGTGTAG 59.512 42.308 0.00 0.00 35.69 2.74
381 382 6.365520 TCTCCTCTCATACATGCTAAGTGTA 58.634 40.000 0.00 0.00 36.58 2.90
382 383 5.204292 TCTCCTCTCATACATGCTAAGTGT 58.796 41.667 0.00 0.00 0.00 3.55
383 384 5.781210 TCTCCTCTCATACATGCTAAGTG 57.219 43.478 0.00 0.00 0.00 3.16
384 385 5.658634 TGTTCTCCTCTCATACATGCTAAGT 59.341 40.000 0.00 0.00 0.00 2.24
385 386 6.154203 TGTTCTCCTCTCATACATGCTAAG 57.846 41.667 0.00 0.00 0.00 2.18
386 387 6.155221 AGTTGTTCTCCTCTCATACATGCTAA 59.845 38.462 0.00 0.00 0.00 3.09
387 388 5.658634 AGTTGTTCTCCTCTCATACATGCTA 59.341 40.000 0.00 0.00 0.00 3.49
388 389 4.469227 AGTTGTTCTCCTCTCATACATGCT 59.531 41.667 0.00 0.00 0.00 3.79
389 390 4.764172 AGTTGTTCTCCTCTCATACATGC 58.236 43.478 0.00 0.00 0.00 4.06
390 391 6.511416 CCTAGTTGTTCTCCTCTCATACATG 58.489 44.000 0.00 0.00 0.00 3.21
391 392 5.069781 GCCTAGTTGTTCTCCTCTCATACAT 59.930 44.000 0.00 0.00 0.00 2.29
392 393 4.402793 GCCTAGTTGTTCTCCTCTCATACA 59.597 45.833 0.00 0.00 0.00 2.29
393 394 4.647399 AGCCTAGTTGTTCTCCTCTCATAC 59.353 45.833 0.00 0.00 0.00 2.39
394 395 4.873010 AGCCTAGTTGTTCTCCTCTCATA 58.127 43.478 0.00 0.00 0.00 2.15
395 396 3.718723 AGCCTAGTTGTTCTCCTCTCAT 58.281 45.455 0.00 0.00 0.00 2.90
396 397 3.176924 AGCCTAGTTGTTCTCCTCTCA 57.823 47.619 0.00 0.00 0.00 3.27
397 398 3.634910 CCTAGCCTAGTTGTTCTCCTCTC 59.365 52.174 0.00 0.00 0.00 3.20
398 399 3.011934 ACCTAGCCTAGTTGTTCTCCTCT 59.988 47.826 0.00 0.00 0.00 3.69
399 400 3.367321 ACCTAGCCTAGTTGTTCTCCTC 58.633 50.000 0.00 0.00 0.00 3.71
400 401 3.476485 ACCTAGCCTAGTTGTTCTCCT 57.524 47.619 0.00 0.00 0.00 3.69
401 402 3.514309 TGAACCTAGCCTAGTTGTTCTCC 59.486 47.826 16.69 0.00 36.98 3.71
402 403 4.803098 TGAACCTAGCCTAGTTGTTCTC 57.197 45.455 16.69 0.19 36.98 2.87
403 404 4.563786 GCTTGAACCTAGCCTAGTTGTTCT 60.564 45.833 16.69 0.00 36.98 3.01
404 405 3.685272 GCTTGAACCTAGCCTAGTTGTTC 59.315 47.826 11.69 11.69 36.67 3.18
405 406 3.072476 TGCTTGAACCTAGCCTAGTTGTT 59.928 43.478 0.00 0.00 37.85 2.83
406 407 2.637872 TGCTTGAACCTAGCCTAGTTGT 59.362 45.455 0.00 0.00 37.85 3.32
407 408 3.334583 TGCTTGAACCTAGCCTAGTTG 57.665 47.619 0.00 0.00 37.85 3.16
408 409 3.878778 CATGCTTGAACCTAGCCTAGTT 58.121 45.455 0.00 0.00 37.85 2.24
409 410 2.420687 GCATGCTTGAACCTAGCCTAGT 60.421 50.000 11.37 0.00 37.85 2.57
410 411 2.158842 AGCATGCTTGAACCTAGCCTAG 60.159 50.000 16.30 0.00 37.85 3.02
411 412 1.839994 AGCATGCTTGAACCTAGCCTA 59.160 47.619 16.30 0.00 37.85 3.93
412 413 0.622665 AGCATGCTTGAACCTAGCCT 59.377 50.000 16.30 0.00 37.85 4.58
413 414 1.943340 GTAGCATGCTTGAACCTAGCC 59.057 52.381 28.02 0.00 37.85 3.93
414 415 1.943340 GGTAGCATGCTTGAACCTAGC 59.057 52.381 28.02 11.79 39.10 3.42
415 416 3.266510 TGGTAGCATGCTTGAACCTAG 57.733 47.619 29.46 0.00 33.67 3.02
416 417 3.712016 TTGGTAGCATGCTTGAACCTA 57.288 42.857 29.46 22.87 33.67 3.08
417 418 2.558359 GTTTGGTAGCATGCTTGAACCT 59.442 45.455 29.46 8.82 33.67 3.50
418 419 2.295909 TGTTTGGTAGCATGCTTGAACC 59.704 45.455 28.02 26.34 33.32 3.62
419 420 3.243367 TGTGTTTGGTAGCATGCTTGAAC 60.243 43.478 28.02 22.50 0.00 3.18
420 421 2.954989 TGTGTTTGGTAGCATGCTTGAA 59.045 40.909 28.02 13.24 0.00 2.69
421 422 2.293122 GTGTGTTTGGTAGCATGCTTGA 59.707 45.455 28.02 5.63 0.00 3.02
422 423 2.607771 GGTGTGTTTGGTAGCATGCTTG 60.608 50.000 28.02 0.00 0.00 4.01
423 424 1.613437 GGTGTGTTTGGTAGCATGCTT 59.387 47.619 28.02 10.27 0.00 3.91
424 425 1.247567 GGTGTGTTTGGTAGCATGCT 58.752 50.000 25.99 25.99 0.00 3.79
425 426 0.243636 GGGTGTGTTTGGTAGCATGC 59.756 55.000 10.51 10.51 0.00 4.06
426 427 1.614996 TGGGTGTGTTTGGTAGCATG 58.385 50.000 0.00 0.00 0.00 4.06
427 428 2.603075 ATGGGTGTGTTTGGTAGCAT 57.397 45.000 0.00 0.00 0.00 3.79
428 429 2.373836 ACTATGGGTGTGTTTGGTAGCA 59.626 45.455 0.00 0.00 0.00 3.49
429 430 2.747446 CACTATGGGTGTGTTTGGTAGC 59.253 50.000 0.00 0.00 40.79 3.58
430 431 3.343617 CCACTATGGGTGTGTTTGGTAG 58.656 50.000 0.00 0.00 43.94 3.18
431 432 3.426787 CCACTATGGGTGTGTTTGGTA 57.573 47.619 0.00 0.00 43.94 3.25
432 433 2.286365 CCACTATGGGTGTGTTTGGT 57.714 50.000 0.00 0.00 43.94 3.67
443 444 0.697854 ACCCTAAGGCCCCACTATGG 60.698 60.000 0.00 0.00 36.11 2.74
500 505 3.772572 TGGAATTGGAATGGTACGAGAGA 59.227 43.478 0.00 0.00 0.00 3.10
541 551 2.787866 CAAGGGGAGGAGAGGGGA 59.212 66.667 0.00 0.00 0.00 4.81
821 849 9.286170 ACCTTTTTCTTGTTCTCCTTATTACTC 57.714 33.333 0.00 0.00 0.00 2.59
822 850 9.642343 AACCTTTTTCTTGTTCTCCTTATTACT 57.358 29.630 0.00 0.00 0.00 2.24
824 852 9.862149 AGAACCTTTTTCTTGTTCTCCTTATTA 57.138 29.630 0.00 0.00 43.87 0.98
825 853 8.768501 AGAACCTTTTTCTTGTTCTCCTTATT 57.231 30.769 0.00 0.00 43.87 1.40
826 854 8.633561 CAAGAACCTTTTTCTTGTTCTCCTTAT 58.366 33.333 15.58 0.00 45.85 1.73
857 885 4.029809 AAAACCTCTCCGGCCCCG 62.030 66.667 0.00 0.00 35.61 5.73
939 984 7.487509 CCAAATTTCAAACTTTTCGCCAATTTT 59.512 29.630 0.00 0.00 0.00 1.82
974 1019 0.249120 CATTATCGCCCAGCCCGATA 59.751 55.000 0.00 0.00 42.98 2.92
982 1027 2.203337 GGCAGCCATTATCGCCCA 60.203 61.111 6.55 0.00 38.67 5.36
989 1034 2.519063 CCGCCATGGCAGCCATTA 60.519 61.111 34.93 0.00 42.23 1.90
1096 1141 4.760047 GGAAGGCTTCCGCGCAGA 62.760 66.667 29.19 0.00 40.59 4.26
1198 1246 2.496817 CGCCTCCTCCTTCTTCGG 59.503 66.667 0.00 0.00 0.00 4.30
1254 1338 2.194326 GGCAAGGGAGATGAGCCC 59.806 66.667 0.00 0.00 46.40 5.19
1255 1339 2.194326 GGGCAAGGGAGATGAGCC 59.806 66.667 0.00 0.00 44.48 4.70
1256 1340 1.148048 GAGGGCAAGGGAGATGAGC 59.852 63.158 0.00 0.00 0.00 4.26
1257 1341 1.445095 CGAGGGCAAGGGAGATGAG 59.555 63.158 0.00 0.00 0.00 2.90
1258 1342 2.735772 GCGAGGGCAAGGGAGATGA 61.736 63.158 0.00 0.00 39.62 2.92
1259 1343 2.203126 GCGAGGGCAAGGGAGATG 60.203 66.667 0.00 0.00 39.62 2.90
1260 1344 3.483869 GGCGAGGGCAAGGGAGAT 61.484 66.667 0.00 0.00 42.47 2.75
1386 1470 2.124693 CCAGCTCCTCTCCGTCCTC 61.125 68.421 0.00 0.00 0.00 3.71
1470 1554 2.435059 GGAGCGACAACCTCCAGC 60.435 66.667 2.70 0.00 46.51 4.85
1538 1622 0.602905 CAAGAACTCACCGGTGGTCC 60.603 60.000 33.40 18.41 31.02 4.46
1644 1737 8.298854 CACATGATTGGACACTGAAAATTCTAA 58.701 33.333 0.00 0.00 0.00 2.10
1828 1934 6.712547 GCAATCAACAAGGAAGGCTAGTATAT 59.287 38.462 0.00 0.00 0.00 0.86
1837 1943 4.746611 GTCAAAAGCAATCAACAAGGAAGG 59.253 41.667 0.00 0.00 0.00 3.46
1838 1944 5.232838 GTGTCAAAAGCAATCAACAAGGAAG 59.767 40.000 0.00 0.00 0.00 3.46
1841 1949 4.505191 CAGTGTCAAAAGCAATCAACAAGG 59.495 41.667 0.00 0.00 0.00 3.61
1873 1981 1.726853 GCAGAACTATGGACTGCGTT 58.273 50.000 14.05 0.00 45.25 4.84
1874 1982 3.442996 GCAGAACTATGGACTGCGT 57.557 52.632 14.05 0.00 45.25 5.24
1879 1987 3.181493 CCAATGCAAGCAGAACTATGGAC 60.181 47.826 0.00 0.00 0.00 4.02
1880 1988 3.018856 CCAATGCAAGCAGAACTATGGA 58.981 45.455 0.00 0.00 0.00 3.41
1881 1989 3.018856 TCCAATGCAAGCAGAACTATGG 58.981 45.455 0.00 2.80 0.00 2.74
1882 1990 4.913335 ATCCAATGCAAGCAGAACTATG 57.087 40.909 0.00 0.00 0.00 2.23
1883 1991 6.604795 AGTTTATCCAATGCAAGCAGAACTAT 59.395 34.615 0.00 0.00 0.00 2.12
1884 1992 5.945784 AGTTTATCCAATGCAAGCAGAACTA 59.054 36.000 0.00 0.00 0.00 2.24
1886 1994 4.860907 CAGTTTATCCAATGCAAGCAGAAC 59.139 41.667 0.00 0.00 0.00 3.01
1887 1995 4.766373 TCAGTTTATCCAATGCAAGCAGAA 59.234 37.500 0.00 0.00 0.00 3.02
1888 1996 4.334552 TCAGTTTATCCAATGCAAGCAGA 58.665 39.130 0.00 0.00 0.00 4.26
1889 1997 4.669318 CTCAGTTTATCCAATGCAAGCAG 58.331 43.478 0.00 0.00 0.00 4.24
1891 1999 3.119388 TGCTCAGTTTATCCAATGCAAGC 60.119 43.478 0.00 0.00 0.00 4.01
1892 2000 4.707030 TGCTCAGTTTATCCAATGCAAG 57.293 40.909 0.00 0.00 0.00 4.01
1893 2001 5.664294 AATGCTCAGTTTATCCAATGCAA 57.336 34.783 0.00 0.00 32.88 4.08
1915 2025 5.339423 AAAGGGGAAATCTGAAGGAGAAA 57.661 39.130 0.00 0.00 33.12 2.52
1934 2044 6.476706 CCCTTCAAGCAACTAAGAACAAAAAG 59.523 38.462 0.00 0.00 0.00 2.27
1961 2072 3.623510 GCCAGTGCTTAAGGATCACTAAC 59.376 47.826 12.20 5.94 38.85 2.34
1963 2074 2.837591 TGCCAGTGCTTAAGGATCACTA 59.162 45.455 12.20 0.00 38.85 2.74
1974 2085 1.281287 AGTGATCAGATGCCAGTGCTT 59.719 47.619 0.00 0.00 38.71 3.91
1979 2090 3.624861 GTGGTAAAGTGATCAGATGCCAG 59.375 47.826 10.98 0.00 0.00 4.85
2005 2116 8.057568 TACAGCTTTGTGTGAAACTGGAAGTG 62.058 42.308 0.00 0.00 38.54 3.16
2065 2177 0.524862 CTTGGAATGGCTGTGCAGTC 59.475 55.000 0.00 0.00 0.00 3.51
2071 2183 4.058721 GTTGAAAACTTGGAATGGCTGT 57.941 40.909 0.00 0.00 45.32 4.40
2103 2222 0.670162 GCAAGTCAGCAACACACCAT 59.330 50.000 0.00 0.00 0.00 3.55
2106 2225 0.734889 ACAGCAAGTCAGCAACACAC 59.265 50.000 0.00 0.00 36.85 3.82
2107 2226 1.132834 CAACAGCAAGTCAGCAACACA 59.867 47.619 0.00 0.00 36.85 3.72
2108 2227 1.831343 CAACAGCAAGTCAGCAACAC 58.169 50.000 0.00 0.00 36.85 3.32
2110 2229 0.101040 TGCAACAGCAAGTCAGCAAC 59.899 50.000 6.84 0.00 37.96 4.17
2111 2230 0.816373 TTGCAACAGCAAGTCAGCAA 59.184 45.000 13.94 13.94 42.91 3.91
2117 2236 7.631377 AGAAATAAGTTCTTTGCAACAGCAAGT 60.631 33.333 0.00 0.00 44.64 3.16
2118 2237 6.698766 AGAAATAAGTTCTTTGCAACAGCAAG 59.301 34.615 0.00 0.00 44.64 4.01
2120 2239 6.147864 AGAAATAAGTTCTTTGCAACAGCA 57.852 33.333 0.00 0.00 44.64 4.41
2123 2242 8.445275 TCAGTAGAAATAAGTTCTTTGCAACA 57.555 30.769 0.00 0.00 44.64 3.33
2124 2243 9.548208 GATCAGTAGAAATAAGTTCTTTGCAAC 57.452 33.333 0.00 0.00 44.64 4.17
2129 2248 9.160496 CTGCAGATCAGTAGAAATAAGTTCTTT 57.840 33.333 8.42 0.00 39.53 2.52
2130 2249 8.535335 TCTGCAGATCAGTAGAAATAAGTTCTT 58.465 33.333 13.74 0.00 42.52 2.52
2136 2257 8.883954 CAGATTCTGCAGATCAGTAGAAATAA 57.116 34.615 19.04 0.00 42.19 1.40
2159 2280 4.940046 ACAAGGATGATTAACAGAGTGCAG 59.060 41.667 0.00 0.00 0.00 4.41
2172 2295 5.128919 GGCAGATTTCTGTACAAGGATGAT 58.871 41.667 9.21 0.00 45.45 2.45
2205 2328 1.079503 GTCCCAACTGATGAGCGAAC 58.920 55.000 0.00 0.00 0.00 3.95
2206 2329 0.976641 AGTCCCAACTGATGAGCGAA 59.023 50.000 0.00 0.00 33.32 4.70
2207 2330 2.671145 AGTCCCAACTGATGAGCGA 58.329 52.632 0.00 0.00 33.32 4.93
2281 2404 8.786898 TGAAGCAAAGCATACTTATATCCATTC 58.213 33.333 0.00 0.00 34.05 2.67
2284 2407 7.775093 AGTTGAAGCAAAGCATACTTATATCCA 59.225 33.333 0.00 0.00 34.05 3.41
2424 2557 9.682465 TTTCTTCATGAGAAATGATTCAGAGAT 57.318 29.630 13.14 0.00 46.69 2.75
2439 2572 3.672808 ACAGGTCAGCTTTCTTCATGAG 58.327 45.455 0.00 0.00 0.00 2.90
2654 2787 4.276926 AGCTCAAACAATCTCCTGTTGAAC 59.723 41.667 0.00 0.00 39.47 3.18
2658 2791 5.234466 AGTAGCTCAAACAATCTCCTGTT 57.766 39.130 0.00 0.00 41.31 3.16
2672 2805 5.128663 TGCACCAGATAATACAAGTAGCTCA 59.871 40.000 0.00 0.00 0.00 4.26
2873 3006 0.095417 GCGCTACCAGCTTCTTTTCG 59.905 55.000 0.00 0.00 39.60 3.46
2957 3090 5.735354 GCGATTCCGAACCTTAACTATCTGA 60.735 44.000 0.00 0.00 38.22 3.27
3016 3150 4.956075 ACAAGTTCCCAGACAAAAGACATT 59.044 37.500 0.00 0.00 0.00 2.71
3202 3336 1.211212 CTCATCATGTCTGCCTTGGGA 59.789 52.381 0.00 0.00 0.00 4.37
3354 3488 3.869272 CGTCGCTCATGGCAAGGC 61.869 66.667 0.00 0.00 41.91 4.35
3360 3494 4.794439 TGTCGGCGTCGCTCATGG 62.794 66.667 18.11 2.06 36.13 3.66
3399 3533 2.820197 GTTCTCGGCTCCTCCAATTTTT 59.180 45.455 0.00 0.00 34.01 1.94
3404 3538 0.762418 TTTGTTCTCGGCTCCTCCAA 59.238 50.000 0.00 0.00 34.01 3.53
3405 3539 0.762418 TTTTGTTCTCGGCTCCTCCA 59.238 50.000 0.00 0.00 34.01 3.86
3515 3649 1.819632 CCACAATAGCCGGCTCACC 60.820 63.158 36.73 0.00 0.00 4.02
3526 3660 3.575256 ACAGAGGTAACACGACCACAATA 59.425 43.478 0.00 0.00 42.47 1.90
3573 3711 8.642432 TCTATACACAATCCCTAGACTCATTTG 58.358 37.037 0.00 0.00 0.00 2.32
3670 3808 3.918591 CAGCTTCTGCATCATCACAAAAC 59.081 43.478 0.00 0.00 42.74 2.43
3690 3828 3.798337 GCAACATGACAAGGTTTTCACAG 59.202 43.478 0.00 0.00 0.00 3.66
3716 3868 2.423538 GGGAACACAGGTAATGATGCAC 59.576 50.000 0.00 0.00 0.00 4.57
3731 3883 2.594303 CAAGCGCCACAGGGAACA 60.594 61.111 2.29 0.00 35.59 3.18
3732 3884 4.043200 GCAAGCGCCACAGGGAAC 62.043 66.667 2.29 0.00 35.59 3.62
3808 3960 3.618690 AACTGCCTCTGATGTTAGGTC 57.381 47.619 0.00 0.00 35.16 3.85
3927 4079 8.755018 CATCCTGTGTTTTCTCATGTTTAAAAC 58.245 33.333 17.98 17.98 41.35 2.43
4002 4162 7.201359 CGTCGACTGGATATAACATAATCAAGC 60.201 40.741 14.70 0.00 27.68 4.01
4027 4187 9.755064 ACGATTTTCTTTGTTAGATACAATTCG 57.245 29.630 0.00 0.00 45.72 3.34
4049 4372 7.867160 TCCCCTTTTTATCCTATTCTACGAT 57.133 36.000 0.00 0.00 0.00 3.73
4075 4398 5.221461 ACGGCTCGAGTATCCAATATTTCTT 60.221 40.000 15.13 0.00 0.00 2.52
4083 4406 1.141019 GCACGGCTCGAGTATCCAA 59.859 57.895 15.13 0.00 0.00 3.53
4087 4410 1.613925 ACATATGCACGGCTCGAGTAT 59.386 47.619 15.13 0.00 0.00 2.12
4092 4415 1.139989 CCTTACATATGCACGGCTCG 58.860 55.000 1.58 0.00 0.00 5.03
4097 4420 1.663643 ACGTTGCCTTACATATGCACG 59.336 47.619 1.58 4.43 36.40 5.34
4101 4424 2.223249 GCCACACGTTGCCTTACATATG 60.223 50.000 0.00 0.00 0.00 1.78
4103 4426 1.270893 TGCCACACGTTGCCTTACATA 60.271 47.619 0.00 0.00 0.00 2.29
4108 4431 2.563798 CCATGCCACACGTTGCCTT 61.564 57.895 0.00 0.00 0.00 4.35
4117 4440 0.921166 AGATGATGGTCCATGCCACA 59.079 50.000 9.76 0.76 41.94 4.17
4129 4452 2.372264 CCTGGTTTGGTGGAGATGATG 58.628 52.381 0.00 0.00 0.00 3.07
4130 4453 1.341383 GCCTGGTTTGGTGGAGATGAT 60.341 52.381 0.00 0.00 0.00 2.45
4131 4454 0.038166 GCCTGGTTTGGTGGAGATGA 59.962 55.000 0.00 0.00 0.00 2.92
4172 4495 1.068333 CCTGCATTTCCGTTTGTCTGG 60.068 52.381 0.00 0.00 0.00 3.86
4269 4593 4.825422 AGAGCAAACAAGATCGAATCAGA 58.175 39.130 0.00 0.00 0.00 3.27
4278 4602 6.166982 GGTCTGTTACTAGAGCAAACAAGAT 58.833 40.000 0.00 0.00 43.01 2.40
4279 4603 5.539048 GGTCTGTTACTAGAGCAAACAAGA 58.461 41.667 0.00 0.01 43.01 3.02
4298 4622 3.374402 CCGGAGCTCACGTGGTCT 61.374 66.667 17.00 12.77 35.11 3.85
4299 4623 3.681835 ACCGGAGCTCACGTGGTC 61.682 66.667 17.00 10.11 0.00 4.02
4300 4624 3.991051 CACCGGAGCTCACGTGGT 61.991 66.667 17.00 14.10 0.00 4.16
4301 4625 3.991051 ACACCGGAGCTCACGTGG 61.991 66.667 26.81 19.52 0.00 4.94
4302 4626 2.734723 CACACCGGAGCTCACGTG 60.735 66.667 23.60 23.60 0.00 4.49
4303 4627 3.991051 CCACACCGGAGCTCACGT 61.991 66.667 17.19 7.62 36.56 4.49
4304 4628 3.680786 TCCACACCGGAGCTCACG 61.681 66.667 17.19 15.99 39.64 4.35
4311 4635 0.178955 TACACCTTCTCCACACCGGA 60.179 55.000 9.46 0.00 43.61 5.14
4312 4636 0.682852 TTACACCTTCTCCACACCGG 59.317 55.000 0.00 0.00 0.00 5.28
4313 4637 1.616865 TCTTACACCTTCTCCACACCG 59.383 52.381 0.00 0.00 0.00 4.94
4314 4638 3.764237 TTCTTACACCTTCTCCACACC 57.236 47.619 0.00 0.00 0.00 4.16
4315 4639 4.511826 CAGTTTCTTACACCTTCTCCACAC 59.488 45.833 0.00 0.00 0.00 3.82
4316 4640 4.444306 CCAGTTTCTTACACCTTCTCCACA 60.444 45.833 0.00 0.00 0.00 4.17
4317 4641 4.065789 CCAGTTTCTTACACCTTCTCCAC 58.934 47.826 0.00 0.00 0.00 4.02
4318 4642 3.714798 ACCAGTTTCTTACACCTTCTCCA 59.285 43.478 0.00 0.00 0.00 3.86
4319 4643 4.040584 AGACCAGTTTCTTACACCTTCTCC 59.959 45.833 0.00 0.00 0.00 3.71
4320 4644 5.216614 AGACCAGTTTCTTACACCTTCTC 57.783 43.478 0.00 0.00 0.00 2.87
4321 4645 5.632034 AAGACCAGTTTCTTACACCTTCT 57.368 39.130 0.00 0.00 33.89 2.85
4322 4646 6.095021 ACAAAAGACCAGTTTCTTACACCTTC 59.905 38.462 0.00 0.00 34.60 3.46
4323 4647 5.949952 ACAAAAGACCAGTTTCTTACACCTT 59.050 36.000 0.00 0.00 34.60 3.50
4324 4648 5.506708 ACAAAAGACCAGTTTCTTACACCT 58.493 37.500 0.00 0.00 34.60 4.00
4325 4649 5.830000 ACAAAAGACCAGTTTCTTACACC 57.170 39.130 0.00 0.00 34.60 4.16
4326 4650 7.309920 TGAAACAAAAGACCAGTTTCTTACAC 58.690 34.615 15.52 0.00 46.82 2.90
4327 4651 7.455641 TGAAACAAAAGACCAGTTTCTTACA 57.544 32.000 15.52 0.00 46.82 2.41
4328 4652 8.027189 ACTTGAAACAAAAGACCAGTTTCTTAC 58.973 33.333 15.52 0.00 46.82 2.34
4329 4653 8.117813 ACTTGAAACAAAAGACCAGTTTCTTA 57.882 30.769 15.52 5.94 46.82 2.10
4330 4654 6.993079 ACTTGAAACAAAAGACCAGTTTCTT 58.007 32.000 15.52 1.60 46.82 2.52
4331 4655 6.590234 ACTTGAAACAAAAGACCAGTTTCT 57.410 33.333 15.52 0.00 46.82 2.52
4332 4656 6.750501 GGTACTTGAAACAAAAGACCAGTTTC 59.249 38.462 9.59 9.59 46.86 2.78
4333 4657 6.436218 AGGTACTTGAAACAAAAGACCAGTTT 59.564 34.615 0.00 0.00 34.49 2.66
4334 4658 5.949952 AGGTACTTGAAACAAAAGACCAGTT 59.050 36.000 0.00 0.00 27.25 3.16
4335 4659 5.506708 AGGTACTTGAAACAAAAGACCAGT 58.493 37.500 0.00 0.00 27.25 4.00
4353 4677 7.136772 AGAAACGTTGCAAAATTAGAAGGTAC 58.863 34.615 9.44 0.00 0.00 3.34
4354 4678 7.266922 AGAAACGTTGCAAAATTAGAAGGTA 57.733 32.000 9.44 0.00 0.00 3.08
4355 4679 6.144078 AGAAACGTTGCAAAATTAGAAGGT 57.856 33.333 9.44 0.00 0.00 3.50
4356 4680 7.463469 AAAGAAACGTTGCAAAATTAGAAGG 57.537 32.000 9.44 0.00 0.00 3.46
4357 4681 8.807581 AGAAAAGAAACGTTGCAAAATTAGAAG 58.192 29.630 9.44 0.00 0.00 2.85
4358 4682 8.591312 CAGAAAAGAAACGTTGCAAAATTAGAA 58.409 29.630 9.44 0.00 0.00 2.10
4359 4683 7.757624 ACAGAAAAGAAACGTTGCAAAATTAGA 59.242 29.630 9.44 0.00 0.00 2.10
4360 4684 7.840797 CACAGAAAAGAAACGTTGCAAAATTAG 59.159 33.333 9.44 0.00 0.00 1.73
4361 4685 7.201478 CCACAGAAAAGAAACGTTGCAAAATTA 60.201 33.333 9.44 0.00 0.00 1.40
4362 4686 6.402011 CCACAGAAAAGAAACGTTGCAAAATT 60.402 34.615 9.44 0.00 0.00 1.82
4363 4687 5.063312 CCACAGAAAAGAAACGTTGCAAAAT 59.937 36.000 9.44 0.00 0.00 1.82
4364 4688 4.387256 CCACAGAAAAGAAACGTTGCAAAA 59.613 37.500 9.44 0.00 0.00 2.44
4365 4689 3.923461 CCACAGAAAAGAAACGTTGCAAA 59.077 39.130 9.44 0.00 0.00 3.68
4366 4690 3.057174 ACCACAGAAAAGAAACGTTGCAA 60.057 39.130 9.44 0.00 0.00 4.08
4367 4691 2.490115 ACCACAGAAAAGAAACGTTGCA 59.510 40.909 9.44 0.00 0.00 4.08
4368 4692 2.851824 CACCACAGAAAAGAAACGTTGC 59.148 45.455 0.00 0.00 0.00 4.17
4369 4693 3.127895 TCCACCACAGAAAAGAAACGTTG 59.872 43.478 0.00 0.00 0.00 4.10
4370 4694 3.349022 TCCACCACAGAAAAGAAACGTT 58.651 40.909 0.00 0.00 0.00 3.99
4371 4695 2.943033 CTCCACCACAGAAAAGAAACGT 59.057 45.455 0.00 0.00 0.00 3.99
4372 4696 2.290641 CCTCCACCACAGAAAAGAAACG 59.709 50.000 0.00 0.00 0.00 3.60
4373 4697 2.623416 CCCTCCACCACAGAAAAGAAAC 59.377 50.000 0.00 0.00 0.00 2.78
4374 4698 2.243736 ACCCTCCACCACAGAAAAGAAA 59.756 45.455 0.00 0.00 0.00 2.52
4375 4699 1.850345 ACCCTCCACCACAGAAAAGAA 59.150 47.619 0.00 0.00 0.00 2.52
4376 4700 1.142870 CACCCTCCACCACAGAAAAGA 59.857 52.381 0.00 0.00 0.00 2.52
4377 4701 1.133792 ACACCCTCCACCACAGAAAAG 60.134 52.381 0.00 0.00 0.00 2.27
4378 4702 0.923358 ACACCCTCCACCACAGAAAA 59.077 50.000 0.00 0.00 0.00 2.29
4379 4703 0.923358 AACACCCTCCACCACAGAAA 59.077 50.000 0.00 0.00 0.00 2.52
4380 4704 0.182537 CAACACCCTCCACCACAGAA 59.817 55.000 0.00 0.00 0.00 3.02
4381 4705 0.692756 TCAACACCCTCCACCACAGA 60.693 55.000 0.00 0.00 0.00 3.41
4382 4706 0.182537 TTCAACACCCTCCACCACAG 59.817 55.000 0.00 0.00 0.00 3.66
4383 4707 0.626382 TTTCAACACCCTCCACCACA 59.374 50.000 0.00 0.00 0.00 4.17
4384 4708 1.318576 CTTTCAACACCCTCCACCAC 58.681 55.000 0.00 0.00 0.00 4.16
4385 4709 0.923358 ACTTTCAACACCCTCCACCA 59.077 50.000 0.00 0.00 0.00 4.17
4386 4710 2.067365 AACTTTCAACACCCTCCACC 57.933 50.000 0.00 0.00 0.00 4.61
4387 4711 2.758423 ACAAACTTTCAACACCCTCCAC 59.242 45.455 0.00 0.00 0.00 4.02
4388 4712 3.094484 ACAAACTTTCAACACCCTCCA 57.906 42.857 0.00 0.00 0.00 3.86
4389 4713 4.399934 TGTTACAAACTTTCAACACCCTCC 59.600 41.667 0.00 0.00 0.00 4.30
4390 4714 5.570234 TGTTACAAACTTTCAACACCCTC 57.430 39.130 0.00 0.00 0.00 4.30
4391 4715 5.986501 TTGTTACAAACTTTCAACACCCT 57.013 34.783 0.00 0.00 31.00 4.34
4392 4716 7.422878 TTTTTGTTACAAACTTTCAACACCC 57.577 32.000 10.28 0.00 31.00 4.61
4393 4717 9.885934 AAATTTTTGTTACAAACTTTCAACACC 57.114 25.926 10.28 0.00 31.00 4.16
4397 4721 9.899226 CCCAAAATTTTTGTTACAAACTTTCAA 57.101 25.926 18.05 2.36 0.00 2.69
4411 4735 5.947443 TGACAAACAAGCCCAAAATTTTTG 58.053 33.333 13.76 13.76 0.00 2.44
4416 4740 5.294734 AGATTGACAAACAAGCCCAAAAT 57.705 34.783 0.00 0.00 44.75 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.