Multiple sequence alignment - TraesCS7B01G415900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G415900 chr7B 100.000 4073 0 0 1 4073 683420733 683416661 0.000000e+00 7522.0
1 TraesCS7B01G415900 chr7B 93.730 1260 79 0 1861 3120 683325164 683323905 0.000000e+00 1890.0
2 TraesCS7B01G415900 chr7B 86.066 1342 179 5 1633 2970 640353878 640355215 0.000000e+00 1435.0
3 TraesCS7B01G415900 chr7B 78.866 2186 377 50 1001 3127 683169245 683167086 0.000000e+00 1399.0
4 TraesCS7B01G415900 chr7B 78.691 2093 372 42 987 3027 683030502 683032572 0.000000e+00 1327.0
5 TraesCS7B01G415900 chr7B 95.929 393 16 0 1478 1870 683326261 683325869 4.440000e-179 638.0
6 TraesCS7B01G415900 chr7B 77.888 805 155 13 994 1776 683243790 683242987 2.850000e-131 479.0
7 TraesCS7B01G415900 chr7B 87.297 370 23 7 4 349 196375666 196375297 6.340000e-108 401.0
8 TraesCS7B01G415900 chr7B 90.845 284 25 1 3155 3437 713698447 713698730 2.970000e-101 379.0
9 TraesCS7B01G415900 chr7B 85.870 368 25 10 5 349 69586696 69587059 2.310000e-97 366.0
10 TraesCS7B01G415900 chr7B 90.179 224 18 4 3836 4058 683316351 683316131 5.150000e-74 289.0
11 TraesCS7B01G415900 chr7B 79.487 156 23 6 512 662 640346295 640346446 7.200000e-18 102.0
12 TraesCS7B01G415900 chr7B 86.207 87 10 2 3695 3780 600649952 600649867 4.330000e-15 93.5
13 TraesCS7B01G415900 chr7D 93.928 2355 125 12 827 3172 602772326 602769981 0.000000e+00 3541.0
14 TraesCS7B01G415900 chr7D 86.879 1227 132 20 1879 3090 602722603 602721391 0.000000e+00 1347.0
15 TraesCS7B01G415900 chr7D 82.803 692 104 11 2414 3100 602629234 602629915 4.500000e-169 604.0
16 TraesCS7B01G415900 chr7D 78.342 808 149 14 994 1776 602751501 602750695 2.190000e-137 499.0
17 TraesCS7B01G415900 chr7D 85.480 427 36 8 356 780 602772736 602772334 4.870000e-114 422.0
18 TraesCS7B01G415900 chr7D 91.289 287 25 0 3776 4062 602768527 602768241 3.820000e-105 392.0
19 TraesCS7B01G415900 chr7D 92.537 268 18 2 3171 3437 42618350 42618616 2.300000e-102 383.0
20 TraesCS7B01G415900 chr7D 75.951 815 154 23 1001 1776 602664450 602663639 8.260000e-102 381.0
21 TraesCS7B01G415900 chr7D 82.213 253 39 3 2844 3091 602748261 602748010 3.190000e-51 213.0
22 TraesCS7B01G415900 chr7A 92.904 2311 150 6 827 3135 694422568 694420270 0.000000e+00 3347.0
23 TraesCS7B01G415900 chr7A 85.526 1292 153 20 1803 3075 694357314 694356038 0.000000e+00 1319.0
24 TraesCS7B01G415900 chr7A 85.455 770 107 3 2323 3091 669396287 669395522 0.000000e+00 797.0
25 TraesCS7B01G415900 chr7A 85.626 647 90 2 1688 2331 669397101 669396455 0.000000e+00 676.0
26 TraesCS7B01G415900 chr7A 77.463 812 153 20 994 1776 694375882 694375072 3.710000e-125 459.0
27 TraesCS7B01G415900 chr7A 77.195 820 153 20 987 1774 694196437 694197254 8.030000e-122 448.0
28 TraesCS7B01G415900 chr7A 76.980 808 152 19 1001 1776 694331903 694331098 8.090000e-117 431.0
29 TraesCS7B01G415900 chr7A 85.122 410 54 5 1901 2308 694117351 694117755 2.930000e-111 412.0
30 TraesCS7B01G415900 chr7A 84.870 423 33 18 350 769 694422983 694422589 8.200000e-107 398.0
31 TraesCS7B01G415900 chr7A 77.684 708 112 25 996 1681 669398103 669397420 1.370000e-104 390.0
32 TraesCS7B01G415900 chr7A 84.659 352 38 5 7 350 569393063 569392720 1.810000e-88 337.0
33 TraesCS7B01G415900 chr7A 88.945 199 14 4 3831 4021 694419869 694419671 5.260000e-59 239.0
34 TraesCS7B01G415900 chr7A 77.411 394 62 14 987 1353 694135994 694136387 4.130000e-50 209.0
35 TraesCS7B01G415900 chrUn 85.594 2131 264 23 990 3091 92685773 92683657 0.000000e+00 2194.0
36 TraesCS7B01G415900 chrUn 85.594 2131 264 23 990 3091 291005275 291003159 0.000000e+00 2194.0
37 TraesCS7B01G415900 chrUn 90.845 284 25 1 3155 3437 87719588 87719871 2.970000e-101 379.0
38 TraesCS7B01G415900 chrUn 76.974 152 32 3 512 662 92686233 92686084 2.610000e-12 84.2
39 TraesCS7B01G415900 chrUn 76.974 152 32 3 512 662 291005735 291005586 2.610000e-12 84.2
40 TraesCS7B01G415900 chr4B 77.251 822 146 15 990 1774 28536571 28537388 1.040000e-120 444.0
41 TraesCS7B01G415900 chr3D 87.784 352 36 6 1 350 238616583 238616929 4.900000e-109 405.0
42 TraesCS7B01G415900 chr3D 86.034 358 35 5 1 350 492006841 492007191 1.790000e-98 370.0
43 TraesCS7B01G415900 chr3D 86.869 99 10 3 3688 3784 541072187 541072284 1.550000e-19 108.0
44 TraesCS7B01G415900 chr6B 92.537 268 19 1 3171 3437 118216513 118216780 2.300000e-102 383.0
45 TraesCS7B01G415900 chr6B 91.513 271 22 1 3168 3437 417495967 417496237 4.970000e-99 372.0
46 TraesCS7B01G415900 chr3B 92.453 265 19 1 3171 3434 582405731 582405995 1.070000e-100 377.0
47 TraesCS7B01G415900 chr1B 86.027 365 34 12 4 353 623870945 623870583 3.840000e-100 375.0
48 TraesCS7B01G415900 chr1B 92.075 265 20 1 3174 3437 403528857 403528593 4.970000e-99 372.0
49 TraesCS7B01G415900 chr4D 86.034 358 38 9 6 352 41720142 41719786 1.380000e-99 374.0
50 TraesCS7B01G415900 chr4D 84.595 370 34 14 7 356 476862512 476862146 3.010000e-91 346.0
51 TraesCS7B01G415900 chr4D 86.364 88 10 2 3696 3782 466837227 466837141 1.210000e-15 95.3
52 TraesCS7B01G415900 chr5B 91.791 268 21 1 3171 3437 399955791 399955524 4.970000e-99 372.0
53 TraesCS7B01G415900 chr1D 91.481 270 22 1 3169 3437 199704628 199704359 1.790000e-98 370.0
54 TraesCS7B01G415900 chr1D 87.059 85 9 2 3703 3786 471622644 471622561 1.210000e-15 95.3
55 TraesCS7B01G415900 chr1D 85.556 90 11 2 3695 3783 415688357 415688445 4.330000e-15 93.5
56 TraesCS7B01G415900 chr2D 85.205 365 34 11 5 349 127267629 127267993 1.390000e-94 357.0
57 TraesCS7B01G415900 chr3A 87.640 89 9 2 3693 3780 637283348 637283435 7.200000e-18 102.0
58 TraesCS7B01G415900 chr6D 83.495 103 14 3 3689 3790 31762105 31762005 4.330000e-15 93.5
59 TraesCS7B01G415900 chr6D 85.227 88 10 3 3704 3790 23431975 23431890 2.020000e-13 87.9
60 TraesCS7B01G415900 chr2A 86.207 87 8 4 3697 3780 656952215 656952130 1.560000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G415900 chr7B 683416661 683420733 4072 True 7522.000000 7522 100.000000 1 4073 1 chr7B.!!$R6 4072
1 TraesCS7B01G415900 chr7B 640353878 640355215 1337 False 1435.000000 1435 86.066000 1633 2970 1 chr7B.!!$F3 1337
2 TraesCS7B01G415900 chr7B 683167086 683169245 2159 True 1399.000000 1399 78.866000 1001 3127 1 chr7B.!!$R3 2126
3 TraesCS7B01G415900 chr7B 683030502 683032572 2070 False 1327.000000 1327 78.691000 987 3027 1 chr7B.!!$F4 2040
4 TraesCS7B01G415900 chr7B 683323905 683326261 2356 True 1264.000000 1890 94.829500 1478 3120 2 chr7B.!!$R7 1642
5 TraesCS7B01G415900 chr7B 683242987 683243790 803 True 479.000000 479 77.888000 994 1776 1 chr7B.!!$R4 782
6 TraesCS7B01G415900 chr7D 602768241 602772736 4495 True 1451.666667 3541 90.232333 356 4062 3 chr7D.!!$R4 3706
7 TraesCS7B01G415900 chr7D 602721391 602722603 1212 True 1347.000000 1347 86.879000 1879 3090 1 chr7D.!!$R2 1211
8 TraesCS7B01G415900 chr7D 602629234 602629915 681 False 604.000000 604 82.803000 2414 3100 1 chr7D.!!$F2 686
9 TraesCS7B01G415900 chr7D 602663639 602664450 811 True 381.000000 381 75.951000 1001 1776 1 chr7D.!!$R1 775
10 TraesCS7B01G415900 chr7D 602748010 602751501 3491 True 356.000000 499 80.277500 994 3091 2 chr7D.!!$R3 2097
11 TraesCS7B01G415900 chr7A 694419671 694422983 3312 True 1328.000000 3347 88.906333 350 4021 3 chr7A.!!$R6 3671
12 TraesCS7B01G415900 chr7A 694356038 694357314 1276 True 1319.000000 1319 85.526000 1803 3075 1 chr7A.!!$R3 1272
13 TraesCS7B01G415900 chr7A 669395522 669398103 2581 True 621.000000 797 82.921667 996 3091 3 chr7A.!!$R5 2095
14 TraesCS7B01G415900 chr7A 694375072 694375882 810 True 459.000000 459 77.463000 994 1776 1 chr7A.!!$R4 782
15 TraesCS7B01G415900 chr7A 694196437 694197254 817 False 448.000000 448 77.195000 987 1774 1 chr7A.!!$F3 787
16 TraesCS7B01G415900 chr7A 694331098 694331903 805 True 431.000000 431 76.980000 1001 1776 1 chr7A.!!$R2 775
17 TraesCS7B01G415900 chrUn 92683657 92686233 2576 True 1139.100000 2194 81.284000 512 3091 2 chrUn.!!$R1 2579
18 TraesCS7B01G415900 chrUn 291003159 291005735 2576 True 1139.100000 2194 81.284000 512 3091 2 chrUn.!!$R2 2579
19 TraesCS7B01G415900 chr4B 28536571 28537388 817 False 444.000000 444 77.251000 990 1774 1 chr4B.!!$F1 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 685 0.038892 GGCGACTTCGTCCTGTGTAA 60.039 55.0 0.00 0.00 42.22 2.41 F
931 952 0.110328 AACGTCGACGAGCTGTACAG 60.110 55.0 41.52 18.93 43.02 2.74 F
1184 1244 0.179124 AGGCTCGAGCTGACGAATTC 60.179 55.0 34.46 15.99 41.67 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2442 3856 0.609131 CCCCGAGTTTGGTGCTCATT 60.609 55.000 0.0 0.0 33.45 2.57 R
2733 4147 2.043852 GCCTCGTCTCCCCTCAGA 60.044 66.667 0.0 0.0 0.00 3.27 R
3172 5892 2.036733 TGATACTACCATTACGGGCAGC 59.963 50.000 0.0 0.0 40.22 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 2.961721 CGATGGCGTCGTCCATGG 60.962 66.667 20.53 16.93 46.29 3.66
79 80 2.186903 GATGGCGTCGTCCATGGT 59.813 61.111 20.96 3.64 46.29 3.55
80 81 1.883084 GATGGCGTCGTCCATGGTC 60.883 63.158 20.96 5.07 46.29 4.02
81 82 3.716539 ATGGCGTCGTCCATGGTCG 62.717 63.158 23.14 23.14 44.72 4.79
84 85 4.508128 CGTCGTCCATGGTCGGGG 62.508 72.222 27.21 17.00 0.00 5.73
85 86 4.832608 GTCGTCCATGGTCGGGGC 62.833 72.222 27.21 15.79 0.00 5.80
102 103 3.645286 CGGGAGCGTTTTCGGAAA 58.355 55.556 0.00 0.00 44.29 3.13
103 104 1.943293 CGGGAGCGTTTTCGGAAAA 59.057 52.632 11.68 11.68 44.29 2.29
104 105 0.308376 CGGGAGCGTTTTCGGAAAAA 59.692 50.000 16.83 0.02 44.29 1.94
105 106 1.068816 CGGGAGCGTTTTCGGAAAAAT 60.069 47.619 16.83 6.96 44.29 1.82
106 107 2.324860 GGGAGCGTTTTCGGAAAAATG 58.675 47.619 16.83 13.30 42.05 2.32
107 108 2.324860 GGAGCGTTTTCGGAAAAATGG 58.675 47.619 16.83 10.63 40.32 3.16
108 109 2.324860 GAGCGTTTTCGGAAAAATGGG 58.675 47.619 16.83 8.48 40.32 4.00
109 110 1.000394 AGCGTTTTCGGAAAAATGGGG 60.000 47.619 16.83 6.36 40.32 4.96
110 111 1.937562 GCGTTTTCGGAAAAATGGGGG 60.938 52.381 16.83 4.86 40.32 5.40
125 126 2.683572 GGGGGAAATGGTGGTGGC 60.684 66.667 0.00 0.00 0.00 5.01
126 127 2.445155 GGGGAAATGGTGGTGGCT 59.555 61.111 0.00 0.00 0.00 4.75
127 128 1.984026 GGGGAAATGGTGGTGGCTG 60.984 63.158 0.00 0.00 0.00 4.85
128 129 2.649129 GGGAAATGGTGGTGGCTGC 61.649 63.158 0.00 0.00 0.00 5.25
129 130 2.649129 GGAAATGGTGGTGGCTGCC 61.649 63.158 12.87 12.87 0.00 4.85
130 131 1.907807 GAAATGGTGGTGGCTGCCA 60.908 57.895 19.30 19.30 36.64 4.92
158 159 2.042230 GGCCCGGGGAGAAGAGTA 60.042 66.667 25.28 0.00 0.00 2.59
159 160 2.134933 GGCCCGGGGAGAAGAGTAG 61.135 68.421 25.28 0.00 0.00 2.57
160 161 2.134933 GCCCGGGGAGAAGAGTAGG 61.135 68.421 25.28 0.00 0.00 3.18
161 162 2.134933 CCCGGGGAGAAGAGTAGGC 61.135 68.421 14.71 0.00 0.00 3.93
162 163 2.491022 CCGGGGAGAAGAGTAGGCG 61.491 68.421 0.00 0.00 0.00 5.52
163 164 2.816012 GGGGAGAAGAGTAGGCGC 59.184 66.667 0.00 0.00 0.00 6.53
164 165 2.413765 GGGAGAAGAGTAGGCGCG 59.586 66.667 0.00 0.00 0.00 6.86
165 166 2.278923 GGAGAAGAGTAGGCGCGC 60.279 66.667 25.94 25.94 0.00 6.86
166 167 2.652496 GAGAAGAGTAGGCGCGCG 60.652 66.667 28.44 28.44 0.00 6.86
167 168 4.856607 AGAAGAGTAGGCGCGCGC 62.857 66.667 44.40 44.40 41.06 6.86
180 181 3.030308 CGCGCGCATCCGTCTAAT 61.030 61.111 32.61 0.00 36.67 1.73
181 182 2.546321 GCGCGCATCCGTCTAATG 59.454 61.111 29.10 0.00 36.67 1.90
182 183 2.237751 GCGCGCATCCGTCTAATGT 61.238 57.895 29.10 0.00 36.67 2.71
183 184 1.846648 CGCGCATCCGTCTAATGTC 59.153 57.895 8.75 0.00 36.67 3.06
184 185 1.548973 CGCGCATCCGTCTAATGTCC 61.549 60.000 8.75 0.00 36.67 4.02
185 186 0.529773 GCGCATCCGTCTAATGTCCA 60.530 55.000 0.30 0.00 36.67 4.02
186 187 1.209128 CGCATCCGTCTAATGTCCAC 58.791 55.000 0.00 0.00 0.00 4.02
187 188 1.209128 GCATCCGTCTAATGTCCACG 58.791 55.000 0.00 0.00 0.00 4.94
188 189 1.209128 CATCCGTCTAATGTCCACGC 58.791 55.000 0.00 0.00 32.03 5.34
189 190 0.104304 ATCCGTCTAATGTCCACGCC 59.896 55.000 0.00 0.00 32.03 5.68
190 191 1.876714 CCGTCTAATGTCCACGCCG 60.877 63.158 0.00 0.00 32.03 6.46
191 192 1.138036 CGTCTAATGTCCACGCCGA 59.862 57.895 0.00 0.00 0.00 5.54
192 193 1.138047 CGTCTAATGTCCACGCCGAC 61.138 60.000 0.00 0.00 0.00 4.79
194 195 2.507547 TAATGTCCACGCCGACGC 60.508 61.111 0.00 0.00 45.53 5.19
195 196 3.284133 TAATGTCCACGCCGACGCA 62.284 57.895 0.00 0.00 45.53 5.24
196 197 2.766875 TAATGTCCACGCCGACGCAA 62.767 55.000 0.00 0.00 45.53 4.85
197 198 4.893601 TGTCCACGCCGACGCAAA 62.894 61.111 0.00 0.00 45.53 3.68
198 199 3.419759 GTCCACGCCGACGCAAAT 61.420 61.111 0.00 0.00 45.53 2.32
199 200 3.115892 TCCACGCCGACGCAAATC 61.116 61.111 0.00 0.00 45.53 2.17
200 201 3.418913 CCACGCCGACGCAAATCA 61.419 61.111 0.00 0.00 45.53 2.57
201 202 2.096406 CACGCCGACGCAAATCAG 59.904 61.111 0.00 0.00 45.53 2.90
202 203 2.048597 ACGCCGACGCAAATCAGA 60.049 55.556 0.00 0.00 45.53 3.27
203 204 2.380410 ACGCCGACGCAAATCAGAC 61.380 57.895 0.00 0.00 45.53 3.51
204 205 2.094659 CGCCGACGCAAATCAGACT 61.095 57.895 0.00 0.00 34.03 3.24
205 206 1.710339 GCCGACGCAAATCAGACTC 59.290 57.895 0.00 0.00 34.03 3.36
206 207 1.014044 GCCGACGCAAATCAGACTCA 61.014 55.000 0.00 0.00 34.03 3.41
207 208 1.428448 CCGACGCAAATCAGACTCAA 58.572 50.000 0.00 0.00 0.00 3.02
208 209 1.798223 CCGACGCAAATCAGACTCAAA 59.202 47.619 0.00 0.00 0.00 2.69
209 210 2.223144 CCGACGCAAATCAGACTCAAAA 59.777 45.455 0.00 0.00 0.00 2.44
210 211 3.120199 CCGACGCAAATCAGACTCAAAAT 60.120 43.478 0.00 0.00 0.00 1.82
211 212 4.466828 CGACGCAAATCAGACTCAAAATT 58.533 39.130 0.00 0.00 0.00 1.82
212 213 4.319115 CGACGCAAATCAGACTCAAAATTG 59.681 41.667 0.00 0.00 0.00 2.32
213 214 4.549458 ACGCAAATCAGACTCAAAATTGG 58.451 39.130 0.00 0.00 0.00 3.16
214 215 3.922240 CGCAAATCAGACTCAAAATTGGG 59.078 43.478 0.00 0.00 33.95 4.12
215 216 3.681417 GCAAATCAGACTCAAAATTGGGC 59.319 43.478 0.00 0.00 29.59 5.36
216 217 4.248058 CAAATCAGACTCAAAATTGGGCC 58.752 43.478 0.00 0.00 29.59 5.80
217 218 1.533625 TCAGACTCAAAATTGGGCCG 58.466 50.000 0.00 0.00 29.59 6.13
218 219 0.527565 CAGACTCAAAATTGGGCCGG 59.472 55.000 0.00 0.00 29.59 6.13
219 220 0.404040 AGACTCAAAATTGGGCCGGA 59.596 50.000 5.05 0.00 29.59 5.14
220 221 1.203001 AGACTCAAAATTGGGCCGGAA 60.203 47.619 5.05 0.00 29.59 4.30
221 222 1.616374 GACTCAAAATTGGGCCGGAAA 59.384 47.619 5.05 0.00 29.59 3.13
222 223 2.233676 GACTCAAAATTGGGCCGGAAAT 59.766 45.455 5.05 0.00 29.59 2.17
223 224 2.028203 ACTCAAAATTGGGCCGGAAATG 60.028 45.455 5.05 0.00 29.59 2.32
224 225 1.277557 TCAAAATTGGGCCGGAAATGG 59.722 47.619 5.05 0.00 0.00 3.16
225 226 0.617935 AAAATTGGGCCGGAAATGGG 59.382 50.000 5.05 0.00 0.00 4.00
226 227 0.546507 AAATTGGGCCGGAAATGGGT 60.547 50.000 5.05 0.00 0.00 4.51
227 228 0.975556 AATTGGGCCGGAAATGGGTC 60.976 55.000 5.05 0.00 0.00 4.46
228 229 3.929334 TTGGGCCGGAAATGGGTCG 62.929 63.158 5.05 0.00 0.00 4.79
243 244 4.965348 TCGCCCGCGGACGAAAAA 62.965 61.111 34.30 11.97 43.93 1.94
244 245 4.729798 CGCCCGCGGACGAAAAAC 62.730 66.667 30.91 4.71 43.93 2.43
247 248 3.037249 CCGCGGACGAAAAACGGA 61.037 61.111 24.07 0.00 46.71 4.69
248 249 3.285776 CCGCGGACGAAAAACGGAC 62.286 63.158 24.07 0.00 46.71 4.79
254 255 2.622085 CGAAAAACGGACACGCGT 59.378 55.556 5.58 5.58 46.04 6.01
255 256 1.012014 CGAAAAACGGACACGCGTT 60.012 52.632 10.22 0.17 46.04 4.84
256 257 0.983481 CGAAAAACGGACACGCGTTC 60.983 55.000 10.22 11.01 46.04 3.95
267 268 4.067016 CGCGTTCGTTTGGGTCGG 62.067 66.667 0.00 0.00 0.00 4.79
268 269 4.379143 GCGTTCGTTTGGGTCGGC 62.379 66.667 0.00 0.00 0.00 5.54
269 270 4.067016 CGTTCGTTTGGGTCGGCG 62.067 66.667 0.00 0.00 0.00 6.46
270 271 4.379143 GTTCGTTTGGGTCGGCGC 62.379 66.667 0.00 0.00 0.00 6.53
274 275 4.676586 GTTTGGGTCGGCGCGTTG 62.677 66.667 8.43 0.00 0.00 4.10
293 294 2.112029 GGCAACCACTTTTGTCCGT 58.888 52.632 0.00 0.00 0.00 4.69
294 295 0.248866 GGCAACCACTTTTGTCCGTG 60.249 55.000 0.00 0.00 0.00 4.94
295 296 0.869880 GCAACCACTTTTGTCCGTGC 60.870 55.000 0.00 0.00 0.00 5.34
296 297 0.248866 CAACCACTTTTGTCCGTGCC 60.249 55.000 0.00 0.00 0.00 5.01
297 298 1.720694 AACCACTTTTGTCCGTGCCG 61.721 55.000 0.00 0.00 0.00 5.69
298 299 1.890041 CCACTTTTGTCCGTGCCGA 60.890 57.895 0.00 0.00 0.00 5.54
299 300 1.278637 CACTTTTGTCCGTGCCGAC 59.721 57.895 0.00 0.00 0.00 4.79
300 301 1.890510 ACTTTTGTCCGTGCCGACC 60.891 57.895 0.00 0.00 31.35 4.79
301 302 2.592287 TTTTGTCCGTGCCGACCC 60.592 61.111 0.00 0.00 31.35 4.46
302 303 3.402095 TTTTGTCCGTGCCGACCCA 62.402 57.895 0.00 0.00 31.35 4.51
303 304 2.888464 TTTTGTCCGTGCCGACCCAA 62.888 55.000 0.00 0.00 31.35 4.12
304 305 2.888464 TTTGTCCGTGCCGACCCAAA 62.888 55.000 0.00 0.00 31.35 3.28
305 306 2.359478 GTCCGTGCCGACCCAAAT 60.359 61.111 0.00 0.00 0.00 2.32
306 307 2.359354 TCCGTGCCGACCCAAATG 60.359 61.111 0.00 0.00 0.00 2.32
307 308 2.359354 CCGTGCCGACCCAAATGA 60.359 61.111 0.00 0.00 0.00 2.57
308 309 1.969064 CCGTGCCGACCCAAATGAA 60.969 57.895 0.00 0.00 0.00 2.57
309 310 1.209127 CGTGCCGACCCAAATGAAC 59.791 57.895 0.00 0.00 0.00 3.18
310 311 1.209127 GTGCCGACCCAAATGAACG 59.791 57.895 0.00 0.00 0.00 3.95
311 312 2.178273 GCCGACCCAAATGAACGC 59.822 61.111 0.00 0.00 0.00 4.84
312 313 2.478746 CCGACCCAAATGAACGCG 59.521 61.111 3.53 3.53 0.00 6.01
313 314 2.478746 CGACCCAAATGAACGCGG 59.521 61.111 12.47 0.00 0.00 6.46
314 315 2.030401 CGACCCAAATGAACGCGGA 61.030 57.895 12.47 0.00 0.00 5.54
315 316 1.500396 GACCCAAATGAACGCGGAC 59.500 57.895 12.47 4.20 0.00 4.79
317 318 2.478746 CCAAATGAACGCGGACGG 59.521 61.111 12.47 0.00 46.04 4.79
318 319 2.030401 CCAAATGAACGCGGACGGA 61.030 57.895 12.47 0.00 46.04 4.69
319 320 1.131826 CAAATGAACGCGGACGGAC 59.868 57.895 12.47 0.00 46.04 4.79
320 321 1.301087 AAATGAACGCGGACGGACA 60.301 52.632 12.47 1.17 46.04 4.02
321 322 0.881159 AAATGAACGCGGACGGACAA 60.881 50.000 12.47 0.00 46.04 3.18
322 323 0.881159 AATGAACGCGGACGGACAAA 60.881 50.000 12.47 0.00 46.04 2.83
323 324 0.881159 ATGAACGCGGACGGACAAAA 60.881 50.000 12.47 0.00 46.04 2.44
324 325 0.881159 TGAACGCGGACGGACAAAAT 60.881 50.000 12.47 0.00 46.04 1.82
325 326 0.452122 GAACGCGGACGGACAAAATG 60.452 55.000 12.47 0.00 46.04 2.32
326 327 1.847890 AACGCGGACGGACAAAATGG 61.848 55.000 12.47 0.00 46.04 3.16
327 328 2.874751 GCGGACGGACAAAATGGG 59.125 61.111 0.00 0.00 0.00 4.00
328 329 1.969589 GCGGACGGACAAAATGGGT 60.970 57.895 0.00 0.00 0.00 4.51
329 330 1.918868 GCGGACGGACAAAATGGGTC 61.919 60.000 0.00 0.00 34.52 4.46
330 331 1.632046 CGGACGGACAAAATGGGTCG 61.632 60.000 0.00 0.00 36.12 4.79
331 332 1.500396 GACGGACAAAATGGGTCGC 59.500 57.895 0.00 0.00 36.12 5.19
332 333 1.918868 GACGGACAAAATGGGTCGCC 61.919 60.000 0.00 0.00 36.12 5.54
333 334 2.696759 CGGACAAAATGGGTCGCCC 61.697 63.158 7.87 7.87 45.71 6.13
344 345 3.080647 GGTCGCCCCATTAGAGTTG 57.919 57.895 0.00 0.00 0.00 3.16
345 346 1.095807 GGTCGCCCCATTAGAGTTGC 61.096 60.000 0.00 0.00 0.00 4.17
346 347 0.107654 GTCGCCCCATTAGAGTTGCT 60.108 55.000 0.00 0.00 0.00 3.91
347 348 0.178068 TCGCCCCATTAGAGTTGCTC 59.822 55.000 0.00 0.00 0.00 4.26
348 349 0.179000 CGCCCCATTAGAGTTGCTCT 59.821 55.000 4.02 4.02 43.83 4.09
349 350 1.412710 CGCCCCATTAGAGTTGCTCTA 59.587 52.381 2.07 2.07 41.50 2.43
350 351 2.546795 CGCCCCATTAGAGTTGCTCTAG 60.547 54.545 6.07 0.00 42.92 2.43
351 352 2.808567 GCCCCATTAGAGTTGCTCTAGC 60.809 54.545 6.07 0.00 42.92 3.42
364 365 1.206849 GCTCTAGCAGCCTCAACTCTT 59.793 52.381 0.00 0.00 43.17 2.85
498 499 2.507324 GCTGTCGTCTTCTCGGCC 60.507 66.667 0.00 0.00 34.35 6.13
566 569 2.125350 GCAAGCCTCCTGGTCTCG 60.125 66.667 0.00 0.00 35.27 4.04
567 570 2.948720 GCAAGCCTCCTGGTCTCGT 61.949 63.158 0.00 0.00 35.27 4.18
569 572 1.077625 AAGCCTCCTGGTCTCGTCT 59.922 57.895 0.00 0.00 35.27 4.18
606 609 1.135972 CAGTGAAGTCATTTTCGCCGG 60.136 52.381 0.00 0.00 38.12 6.13
607 610 1.153353 GTGAAGTCATTTTCGCCGGA 58.847 50.000 5.05 0.00 32.73 5.14
608 611 1.533731 GTGAAGTCATTTTCGCCGGAA 59.466 47.619 5.05 0.00 32.73 4.30
609 612 1.804151 TGAAGTCATTTTCGCCGGAAG 59.196 47.619 5.05 0.00 32.80 3.46
643 646 0.380378 CAACTGGTTTGTGTGGACGG 59.620 55.000 0.00 0.00 0.00 4.79
682 685 0.038892 GGCGACTTCGTCCTGTGTAA 60.039 55.000 0.00 0.00 42.22 2.41
732 735 1.445410 GTACGTGTGCCGCATCTCA 60.445 57.895 0.00 0.00 41.42 3.27
733 736 1.011968 GTACGTGTGCCGCATCTCAA 61.012 55.000 0.00 0.00 41.42 3.02
760 763 9.528018 AATAGAAAATTTCAACAACAACGACAT 57.472 25.926 8.55 0.00 0.00 3.06
769 772 3.407698 ACAACAACGACATCATTGGCTA 58.592 40.909 0.00 0.00 0.00 3.93
771 774 2.009774 ACAACGACATCATTGGCTAGC 58.990 47.619 6.04 6.04 0.00 3.42
777 780 3.652274 GACATCATTGGCTAGCTCTCTC 58.348 50.000 15.72 0.00 0.00 3.20
779 782 1.769026 TCATTGGCTAGCTCTCTCGT 58.231 50.000 15.72 0.00 0.00 4.18
782 785 2.656560 TTGGCTAGCTCTCTCGTTTC 57.343 50.000 15.72 0.00 0.00 2.78
783 786 0.452184 TGGCTAGCTCTCTCGTTTCG 59.548 55.000 15.72 0.00 0.00 3.46
786 789 2.178783 GCTAGCTCTCTCGTTTCGTTC 58.821 52.381 7.70 0.00 0.00 3.95
813 816 1.865340 GTCGTGGAGACCAGTTCAAAC 59.135 52.381 0.00 0.00 43.95 2.93
815 818 2.169769 TCGTGGAGACCAGTTCAAACTT 59.830 45.455 0.00 0.00 37.08 2.66
819 822 2.544267 GGAGACCAGTTCAAACTTGACG 59.456 50.000 1.38 0.00 37.08 4.35
820 823 1.940613 AGACCAGTTCAAACTTGACGC 59.059 47.619 1.38 0.00 37.08 5.19
821 824 1.002792 GACCAGTTCAAACTTGACGCC 60.003 52.381 1.38 0.00 37.08 5.68
828 831 0.316689 CAAACTTGACGCCGACAACC 60.317 55.000 0.00 0.00 0.00 3.77
838 848 0.173255 GCCGACAACCAATTCCATGG 59.827 55.000 4.97 4.97 46.38 3.66
849 859 1.609208 ATTCCATGGCGTTCATAGGC 58.391 50.000 6.96 0.00 34.12 3.93
882 892 2.829384 GGAGAACCCTGGCCACACA 61.829 63.158 0.00 0.00 0.00 3.72
926 947 0.850217 TTTGAAACGTCGACGAGCTG 59.150 50.000 41.52 15.30 43.02 4.24
931 952 0.110328 AACGTCGACGAGCTGTACAG 60.110 55.000 41.52 18.93 43.02 2.74
952 975 7.476540 ACAGTTTCCTCCCCATTTTTATAAC 57.523 36.000 0.00 0.00 0.00 1.89
963 986 5.804979 CCCATTTTTATAACGCTCAAGGTTG 59.195 40.000 0.00 0.00 0.00 3.77
1180 1240 2.568612 CAAGGCTCGAGCTGACGA 59.431 61.111 34.46 0.00 41.70 4.20
1181 1241 1.080501 CAAGGCTCGAGCTGACGAA 60.081 57.895 34.46 0.00 41.67 3.85
1182 1242 0.459237 CAAGGCTCGAGCTGACGAAT 60.459 55.000 34.46 11.93 41.67 3.34
1183 1243 0.247736 AAGGCTCGAGCTGACGAATT 59.752 50.000 34.46 15.76 41.67 2.17
1184 1244 0.179124 AGGCTCGAGCTGACGAATTC 60.179 55.000 34.46 15.99 41.67 2.17
1185 1245 1.475441 GGCTCGAGCTGACGAATTCG 61.475 60.000 34.46 25.64 41.67 3.34
1550 1669 2.679342 CCACCCCCATCACGACCAT 61.679 63.158 0.00 0.00 0.00 3.55
1662 1793 2.571548 CCTGTTCCAGGTCAATGCC 58.428 57.895 1.99 0.00 45.82 4.40
1870 3081 0.540830 TTTGGTGGTATGTGTGGCCC 60.541 55.000 0.00 0.00 0.00 5.80
1888 3105 2.511373 TGTTGCTATGGCGGCGAG 60.511 61.111 12.98 5.33 42.25 5.03
1917 3134 0.690192 TGAAGGCAAATGAGGACGGA 59.310 50.000 0.00 0.00 0.00 4.69
1992 3209 1.335132 CCAGGCGGTACACCTACCAT 61.335 60.000 6.38 0.00 39.94 3.55
2078 3295 0.616891 GTTTACCGGGGTCACCTCAT 59.383 55.000 6.32 0.00 36.97 2.90
2092 3309 0.392193 CCTCATGCTCACACCCTCAC 60.392 60.000 0.00 0.00 0.00 3.51
2248 3483 1.821061 CGACAGCCACAAGGGTCTCT 61.821 60.000 0.00 0.00 45.83 3.10
2442 3856 0.811281 ACATCATGCTCGACTCGTCA 59.189 50.000 0.00 0.00 0.00 4.35
2508 3922 2.904866 GACACGGGGTTGCTGCAA 60.905 61.111 11.69 11.69 0.00 4.08
2559 3973 4.184629 GCTACATTGATCCTGAGTTCGTT 58.815 43.478 0.00 0.00 0.00 3.85
3078 5797 8.324306 TCCAGGGATCTAGCTAATTGATTAATG 58.676 37.037 0.00 0.00 0.00 1.90
3127 5846 4.717233 TTTGTTACATCCACCATGCATC 57.283 40.909 0.00 0.00 35.65 3.91
3146 5865 5.925397 TGCATCGACAGCAACAATTATTTTT 59.075 32.000 11.54 0.00 39.39 1.94
3172 5892 0.321653 AGTTGCGGCTAAACCTGAGG 60.322 55.000 0.00 0.00 35.61 3.86
3173 5893 1.674322 TTGCGGCTAAACCTGAGGC 60.674 57.895 0.00 0.00 35.61 4.70
3174 5894 2.124507 TTGCGGCTAAACCTGAGGCT 62.125 55.000 0.00 0.00 37.34 4.58
3175 5895 2.109126 GCGGCTAAACCTGAGGCTG 61.109 63.158 0.00 0.00 37.34 4.85
3176 5896 2.109126 CGGCTAAACCTGAGGCTGC 61.109 63.158 0.00 0.00 37.34 5.25
3177 5897 1.750780 GGCTAAACCTGAGGCTGCC 60.751 63.158 11.65 11.65 36.58 4.85
3178 5898 1.750780 GCTAAACCTGAGGCTGCCC 60.751 63.158 16.57 7.66 0.00 5.36
3179 5899 1.450312 CTAAACCTGAGGCTGCCCG 60.450 63.158 16.57 4.05 35.76 6.13
3180 5900 2.185310 CTAAACCTGAGGCTGCCCGT 62.185 60.000 16.57 3.65 35.76 5.28
3181 5901 0.905809 TAAACCTGAGGCTGCCCGTA 60.906 55.000 16.57 0.59 35.76 4.02
3182 5902 1.774894 AAACCTGAGGCTGCCCGTAA 61.775 55.000 16.57 0.00 35.76 3.18
3183 5903 1.562672 AACCTGAGGCTGCCCGTAAT 61.563 55.000 16.57 0.00 35.76 1.89
3184 5904 1.524621 CCTGAGGCTGCCCGTAATG 60.525 63.158 16.57 0.00 35.76 1.90
3185 5905 1.524621 CTGAGGCTGCCCGTAATGG 60.525 63.158 16.57 0.00 35.76 3.16
3186 5906 2.257409 CTGAGGCTGCCCGTAATGGT 62.257 60.000 16.57 0.00 35.15 3.55
3187 5907 0.978667 TGAGGCTGCCCGTAATGGTA 60.979 55.000 16.57 0.00 35.15 3.25
3188 5908 0.249911 GAGGCTGCCCGTAATGGTAG 60.250 60.000 16.57 0.00 40.72 3.18
3189 5909 0.981277 AGGCTGCCCGTAATGGTAGT 60.981 55.000 16.57 0.00 39.99 2.73
3190 5910 0.754472 GGCTGCCCGTAATGGTAGTA 59.246 55.000 7.66 0.00 39.99 1.82
3191 5911 1.346722 GGCTGCCCGTAATGGTAGTAT 59.653 52.381 7.66 0.00 39.99 2.12
3192 5912 2.612221 GGCTGCCCGTAATGGTAGTATC 60.612 54.545 7.66 0.00 39.99 2.24
3193 5913 2.036733 GCTGCCCGTAATGGTAGTATCA 59.963 50.000 0.00 0.00 39.99 2.15
3194 5914 3.306780 GCTGCCCGTAATGGTAGTATCAT 60.307 47.826 0.00 0.00 39.99 2.45
3195 5915 4.081862 GCTGCCCGTAATGGTAGTATCATA 60.082 45.833 0.00 0.00 39.99 2.15
3196 5916 5.651530 CTGCCCGTAATGGTAGTATCATAG 58.348 45.833 0.00 0.00 33.82 2.23
3197 5917 4.464951 TGCCCGTAATGGTAGTATCATAGG 59.535 45.833 0.00 1.45 35.15 2.57
3198 5918 4.465305 GCCCGTAATGGTAGTATCATAGGT 59.535 45.833 0.00 0.00 35.15 3.08
3199 5919 5.653769 GCCCGTAATGGTAGTATCATAGGTA 59.346 44.000 0.00 0.00 35.15 3.08
3200 5920 6.183360 GCCCGTAATGGTAGTATCATAGGTAG 60.183 46.154 0.00 0.00 35.15 3.18
3201 5921 6.888632 CCCGTAATGGTAGTATCATAGGTAGT 59.111 42.308 0.00 0.00 35.15 2.73
3202 5922 8.049117 CCCGTAATGGTAGTATCATAGGTAGTA 58.951 40.741 0.00 0.00 35.15 1.82
3203 5923 9.624373 CCGTAATGGTAGTATCATAGGTAGTAT 57.376 37.037 0.00 0.00 0.00 2.12
3208 5928 8.521170 TGGTAGTATCATAGGTAGTATCATGC 57.479 38.462 0.00 0.00 0.00 4.06
3209 5929 8.113462 TGGTAGTATCATAGGTAGTATCATGCA 58.887 37.037 0.00 0.00 0.00 3.96
3210 5930 9.137459 GGTAGTATCATAGGTAGTATCATGCAT 57.863 37.037 0.00 0.00 0.00 3.96
3211 5931 9.958234 GTAGTATCATAGGTAGTATCATGCATG 57.042 37.037 21.07 21.07 0.00 4.06
3212 5932 7.495901 AGTATCATAGGTAGTATCATGCATGC 58.504 38.462 22.25 11.82 0.00 4.06
3213 5933 5.089970 TCATAGGTAGTATCATGCATGCC 57.910 43.478 22.25 15.40 0.00 4.40
3214 5934 4.531732 TCATAGGTAGTATCATGCATGCCA 59.468 41.667 22.25 8.84 0.00 4.92
3215 5935 3.862877 AGGTAGTATCATGCATGCCAA 57.137 42.857 22.25 5.34 0.00 4.52
3216 5936 3.480470 AGGTAGTATCATGCATGCCAAC 58.520 45.455 22.25 17.59 0.00 3.77
3217 5937 3.137176 AGGTAGTATCATGCATGCCAACT 59.863 43.478 22.25 22.78 0.00 3.16
3218 5938 4.347876 AGGTAGTATCATGCATGCCAACTA 59.652 41.667 22.25 21.88 0.00 2.24
3219 5939 5.063204 GGTAGTATCATGCATGCCAACTAA 58.937 41.667 24.68 9.84 0.00 2.24
3220 5940 5.180117 GGTAGTATCATGCATGCCAACTAAG 59.820 44.000 24.68 3.62 0.00 2.18
3221 5941 3.567164 AGTATCATGCATGCCAACTAAGC 59.433 43.478 22.25 4.42 0.00 3.09
3222 5942 1.836802 TCATGCATGCCAACTAAGCA 58.163 45.000 22.25 0.00 45.94 3.91
3223 5943 2.169330 TCATGCATGCCAACTAAGCAA 58.831 42.857 22.25 0.00 44.83 3.91
3224 5944 2.761767 TCATGCATGCCAACTAAGCAAT 59.238 40.909 22.25 0.00 44.83 3.56
3225 5945 3.196039 TCATGCATGCCAACTAAGCAATT 59.804 39.130 22.25 0.00 44.83 2.32
3226 5946 3.681593 TGCATGCCAACTAAGCAATTT 57.318 38.095 16.68 0.00 44.83 1.82
3227 5947 4.005487 TGCATGCCAACTAAGCAATTTT 57.995 36.364 16.68 0.00 44.83 1.82
3228 5948 3.747010 TGCATGCCAACTAAGCAATTTTG 59.253 39.130 16.68 0.00 44.83 2.44
3229 5949 3.747529 GCATGCCAACTAAGCAATTTTGT 59.252 39.130 6.36 0.00 44.83 2.83
3230 5950 4.213906 GCATGCCAACTAAGCAATTTTGTT 59.786 37.500 6.36 0.00 44.83 2.83
3231 5951 5.681880 CATGCCAACTAAGCAATTTTGTTG 58.318 37.500 7.07 7.07 45.80 3.33
3239 5959 7.275888 ACTAAGCAATTTTGTTGAGATGACA 57.724 32.000 0.00 0.00 0.00 3.58
3240 5960 7.141363 ACTAAGCAATTTTGTTGAGATGACAC 58.859 34.615 0.00 0.00 0.00 3.67
3241 5961 5.518848 AGCAATTTTGTTGAGATGACACA 57.481 34.783 0.00 0.00 0.00 3.72
3242 5962 5.526115 AGCAATTTTGTTGAGATGACACAG 58.474 37.500 0.00 0.00 0.00 3.66
3243 5963 5.300034 AGCAATTTTGTTGAGATGACACAGA 59.700 36.000 0.00 0.00 0.00 3.41
3244 5964 5.978919 GCAATTTTGTTGAGATGACACAGAA 59.021 36.000 0.00 0.00 0.00 3.02
3245 5965 6.643770 GCAATTTTGTTGAGATGACACAGAAT 59.356 34.615 0.00 0.00 0.00 2.40
3246 5966 7.809331 GCAATTTTGTTGAGATGACACAGAATA 59.191 33.333 0.00 0.00 0.00 1.75
3247 5967 9.681692 CAATTTTGTTGAGATGACACAGAATAA 57.318 29.630 0.00 0.00 0.00 1.40
3251 5971 9.681692 TTTGTTGAGATGACACAGAATAAAATG 57.318 29.630 0.00 0.00 0.00 2.32
3252 5972 8.620116 TGTTGAGATGACACAGAATAAAATGA 57.380 30.769 0.00 0.00 0.00 2.57
3253 5973 9.065798 TGTTGAGATGACACAGAATAAAATGAA 57.934 29.630 0.00 0.00 0.00 2.57
3254 5974 9.552114 GTTGAGATGACACAGAATAAAATGAAG 57.448 33.333 0.00 0.00 0.00 3.02
3255 5975 9.506018 TTGAGATGACACAGAATAAAATGAAGA 57.494 29.630 0.00 0.00 0.00 2.87
3256 5976 8.939929 TGAGATGACACAGAATAAAATGAAGAC 58.060 33.333 0.00 0.00 0.00 3.01
3257 5977 8.853077 AGATGACACAGAATAAAATGAAGACA 57.147 30.769 0.00 0.00 0.00 3.41
3258 5978 8.944029 AGATGACACAGAATAAAATGAAGACAG 58.056 33.333 0.00 0.00 0.00 3.51
3259 5979 8.853077 ATGACACAGAATAAAATGAAGACAGA 57.147 30.769 0.00 0.00 0.00 3.41
3260 5980 8.315391 TGACACAGAATAAAATGAAGACAGAG 57.685 34.615 0.00 0.00 0.00 3.35
3261 5981 8.150296 TGACACAGAATAAAATGAAGACAGAGA 58.850 33.333 0.00 0.00 0.00 3.10
3262 5982 9.160496 GACACAGAATAAAATGAAGACAGAGAT 57.840 33.333 0.00 0.00 0.00 2.75
3263 5983 8.944029 ACACAGAATAAAATGAAGACAGAGATG 58.056 33.333 0.00 0.00 0.00 2.90
3264 5984 7.909121 CACAGAATAAAATGAAGACAGAGATGC 59.091 37.037 0.00 0.00 0.00 3.91
3265 5985 7.828223 ACAGAATAAAATGAAGACAGAGATGCT 59.172 33.333 0.00 0.00 0.00 3.79
3266 5986 8.675504 CAGAATAAAATGAAGACAGAGATGCTT 58.324 33.333 0.00 0.00 0.00 3.91
3267 5987 8.675504 AGAATAAAATGAAGACAGAGATGCTTG 58.324 33.333 0.00 0.00 0.00 4.01
3268 5988 8.571461 AATAAAATGAAGACAGAGATGCTTGA 57.429 30.769 0.00 0.00 0.00 3.02
3269 5989 6.497785 AAAATGAAGACAGAGATGCTTGAG 57.502 37.500 0.00 0.00 0.00 3.02
3270 5990 4.822685 ATGAAGACAGAGATGCTTGAGT 57.177 40.909 0.00 0.00 0.00 3.41
3271 5991 5.929058 ATGAAGACAGAGATGCTTGAGTA 57.071 39.130 0.00 0.00 0.00 2.59
3272 5992 5.929058 TGAAGACAGAGATGCTTGAGTAT 57.071 39.130 0.00 0.00 0.00 2.12
3273 5993 5.900425 TGAAGACAGAGATGCTTGAGTATC 58.100 41.667 1.38 1.38 37.41 2.24
3319 6039 7.503521 TTAAATGATGTGCTACTTTGTGTCA 57.496 32.000 0.00 0.00 0.00 3.58
3320 6040 6.579666 AAATGATGTGCTACTTTGTGTCAT 57.420 33.333 0.00 0.00 0.00 3.06
3321 6041 5.556355 ATGATGTGCTACTTTGTGTCATG 57.444 39.130 0.00 0.00 0.00 3.07
3322 6042 3.189080 TGATGTGCTACTTTGTGTCATGC 59.811 43.478 0.00 0.00 0.00 4.06
3323 6043 2.570135 TGTGCTACTTTGTGTCATGCA 58.430 42.857 0.00 0.00 0.00 3.96
3324 6044 3.148412 TGTGCTACTTTGTGTCATGCAT 58.852 40.909 0.00 0.00 34.18 3.96
3325 6045 3.058085 TGTGCTACTTTGTGTCATGCATG 60.058 43.478 21.07 21.07 34.18 4.06
3326 6046 3.189080 GTGCTACTTTGTGTCATGCATGA 59.811 43.478 25.42 25.42 34.18 3.07
3363 6083 9.909644 AATACTCTATGATACCAACGTTGATAC 57.090 33.333 29.35 16.50 0.00 2.24
3364 6084 7.584122 ACTCTATGATACCAACGTTGATACT 57.416 36.000 29.35 10.74 0.00 2.12
3365 6085 8.008513 ACTCTATGATACCAACGTTGATACTT 57.991 34.615 29.35 15.89 0.00 2.24
3366 6086 8.475639 ACTCTATGATACCAACGTTGATACTTT 58.524 33.333 29.35 12.00 0.00 2.66
3367 6087 9.961265 CTCTATGATACCAACGTTGATACTTTA 57.039 33.333 29.35 12.45 0.00 1.85
3375 6095 7.520686 ACCAACGTTGATACTTTAAATTACGG 58.479 34.615 29.35 8.72 32.54 4.02
3376 6096 7.387397 ACCAACGTTGATACTTTAAATTACGGA 59.613 33.333 29.35 0.00 32.54 4.69
3377 6097 8.392612 CCAACGTTGATACTTTAAATTACGGAT 58.607 33.333 29.35 0.00 32.54 4.18
3427 6147 8.434733 TGCACGATACTAGTATATGATACTCC 57.565 38.462 22.35 9.89 0.00 3.85
3428 6148 8.265764 TGCACGATACTAGTATATGATACTCCT 58.734 37.037 22.35 0.00 0.00 3.69
3429 6149 8.767085 GCACGATACTAGTATATGATACTCCTC 58.233 40.741 22.35 6.33 0.00 3.71
3430 6150 9.819267 CACGATACTAGTATATGATACTCCTCA 57.181 37.037 15.42 0.00 0.00 3.86
3443 6163 6.472016 TGATACTCCTCATTACAAAAGCACA 58.528 36.000 0.00 0.00 0.00 4.57
3450 6170 2.145397 TTACAAAAGCACACCACCCA 57.855 45.000 0.00 0.00 0.00 4.51
3451 6171 2.373335 TACAAAAGCACACCACCCAT 57.627 45.000 0.00 0.00 0.00 4.00
3460 6180 5.129368 AGCACACCACCCATTTATCTAAT 57.871 39.130 0.00 0.00 0.00 1.73
3486 6206 1.361668 TTTTCTGCCTCGCGATCTGC 61.362 55.000 10.36 13.89 41.47 4.26
3503 6223 5.175673 CGATCTGCGCATAAACATTTCTCTA 59.824 40.000 12.24 0.00 0.00 2.43
3535 6255 5.716228 TCTTCCATATGAAAGCACATTTGGT 59.284 36.000 18.81 0.00 44.10 3.67
3565 7481 3.209410 GCGGATCAGGAAAACATCAGAT 58.791 45.455 0.00 0.00 0.00 2.90
3581 7497 8.846943 AACATCAGATAACTACAATGTGTGAA 57.153 30.769 0.00 0.00 0.00 3.18
3582 7498 8.256611 ACATCAGATAACTACAATGTGTGAAC 57.743 34.615 0.00 0.00 0.00 3.18
3586 7502 7.654116 TCAGATAACTACAATGTGTGAACGAAA 59.346 33.333 0.00 0.00 0.00 3.46
3603 7519 9.332301 GTGAACGAAAATTCCGTATTCATTTTA 57.668 29.630 6.32 0.00 39.57 1.52
3623 7539 9.535878 CATTTTAAAACCAGTTAAAGGTAAGCA 57.464 29.630 1.97 0.00 38.76 3.91
3646 7562 7.069950 AGCAGAATACCTGACATATAACACTCA 59.930 37.037 0.00 0.00 45.78 3.41
3664 7580 7.005709 ACACTCAGCTTATACTTTAACTGGT 57.994 36.000 0.00 0.00 0.00 4.00
3666 7582 7.603024 ACACTCAGCTTATACTTTAACTGGTTC 59.397 37.037 0.00 0.00 0.00 3.62
3714 7636 8.687292 AAAAAGTACTCCTTCCGTAAAGAAAT 57.313 30.769 0.00 0.00 37.12 2.17
3715 7637 9.783081 AAAAAGTACTCCTTCCGTAAAGAAATA 57.217 29.630 0.00 0.00 37.12 1.40
3716 7638 9.955102 AAAAGTACTCCTTCCGTAAAGAAATAT 57.045 29.630 0.00 0.00 37.12 1.28
3722 7644 8.890718 ACTCCTTCCGTAAAGAAATATAAAAGC 58.109 33.333 0.00 0.00 37.12 3.51
3723 7645 7.912383 TCCTTCCGTAAAGAAATATAAAAGCG 58.088 34.615 0.00 0.00 37.12 4.68
3724 7646 7.550196 TCCTTCCGTAAAGAAATATAAAAGCGT 59.450 33.333 0.00 0.00 37.12 5.07
3725 7647 8.179615 CCTTCCGTAAAGAAATATAAAAGCGTT 58.820 33.333 0.00 0.00 37.12 4.84
3726 7648 9.550811 CTTCCGTAAAGAAATATAAAAGCGTTT 57.449 29.630 2.53 2.53 37.12 3.60
3756 7678 8.773404 AACTACTTTAATGATGTAACGCTTCT 57.227 30.769 0.00 0.00 0.00 2.85
3757 7679 8.773404 ACTACTTTAATGATGTAACGCTTCTT 57.227 30.769 0.00 0.00 0.00 2.52
3758 7680 9.865321 ACTACTTTAATGATGTAACGCTTCTTA 57.135 29.630 0.00 0.00 0.00 2.10
3768 7690 9.594478 TGATGTAACGCTTCTTATATTTCTTGA 57.406 29.630 0.00 0.00 0.00 3.02
3771 7693 8.879759 TGTAACGCTTCTTATATTTCTTGAAGG 58.120 33.333 0.00 0.00 35.86 3.46
3772 7694 9.095065 GTAACGCTTCTTATATTTCTTGAAGGA 57.905 33.333 0.00 0.00 35.86 3.36
3773 7695 7.778470 ACGCTTCTTATATTTCTTGAAGGAG 57.222 36.000 0.00 0.00 35.86 3.69
3774 7696 6.763610 ACGCTTCTTATATTTCTTGAAGGAGG 59.236 38.462 0.00 0.00 35.86 4.30
3775 7697 6.986817 CGCTTCTTATATTTCTTGAAGGAGGA 59.013 38.462 0.00 0.00 35.86 3.71
3776 7698 7.495934 CGCTTCTTATATTTCTTGAAGGAGGAA 59.504 37.037 0.00 0.00 35.86 3.36
3777 7699 8.835439 GCTTCTTATATTTCTTGAAGGAGGAAG 58.165 37.037 0.00 0.00 35.86 3.46
3778 7700 9.898152 CTTCTTATATTTCTTGAAGGAGGAAGT 57.102 33.333 0.00 0.00 32.84 3.01
3812 7734 5.191727 TGCAATATCTTTCTTTCCCCTCA 57.808 39.130 0.00 0.00 0.00 3.86
3827 7749 2.158460 CCCCTCACTTTCTCACCCTTTT 60.158 50.000 0.00 0.00 0.00 2.27
3868 7804 4.567857 CCCTCTATTTCCCCCTTTCTCTA 58.432 47.826 0.00 0.00 0.00 2.43
3888 7824 1.756561 ACCGCCACTTTGCCACTTT 60.757 52.632 0.00 0.00 0.00 2.66
3904 7845 8.586570 TTGCCACTTTAAAATTGTGTATTCTG 57.413 30.769 5.62 0.00 0.00 3.02
3925 7866 6.325596 TCTGTTTCTACTCTTCACATCATCG 58.674 40.000 0.00 0.00 0.00 3.84
3935 7877 0.870393 CACATCATCGTAGGGCATGC 59.130 55.000 9.90 9.90 0.00 4.06
4032 7974 3.163655 GCGTTCTGCTGCTGTCTC 58.836 61.111 0.00 0.00 41.73 3.36
4045 7987 2.185608 GTCTCGGCTTCTCCCAGC 59.814 66.667 0.00 0.00 39.28 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.176851 GACCTCGACCTCGACGCC 62.177 72.222 0.00 0.00 44.22 5.68
39 40 4.517703 CGACCTCGACCTCGACGC 62.518 72.222 1.47 0.00 44.22 5.19
40 41 2.800581 CTCGACCTCGACCTCGACG 61.801 68.421 5.73 0.00 44.22 5.12
41 42 0.810823 ATCTCGACCTCGACCTCGAC 60.811 60.000 5.73 0.00 44.22 4.20
42 43 0.530211 GATCTCGACCTCGACCTCGA 60.530 60.000 8.88 8.88 44.22 4.04
43 44 1.823260 CGATCTCGACCTCGACCTCG 61.823 65.000 6.09 8.79 44.22 4.63
44 45 0.530211 TCGATCTCGACCTCGACCTC 60.530 60.000 9.79 0.00 44.22 3.85
45 46 1.521141 TCGATCTCGACCTCGACCT 59.479 57.895 9.79 0.00 44.22 3.85
46 47 4.121691 TCGATCTCGACCTCGACC 57.878 61.111 9.79 0.00 44.22 4.79
62 63 1.883084 GACCATGGACGACGCCATC 60.883 63.158 21.47 0.00 45.36 3.51
64 65 4.429212 CGACCATGGACGACGCCA 62.429 66.667 28.98 12.33 43.23 5.69
67 68 4.508128 CCCCGACCATGGACGACG 62.508 72.222 33.22 22.62 35.52 5.12
68 69 4.832608 GCCCCGACCATGGACGAC 62.833 72.222 33.22 19.83 35.52 4.34
84 85 2.120355 TTTTCCGAAAACGCTCCCGC 62.120 55.000 2.01 0.00 38.22 6.13
85 86 0.308376 TTTTTCCGAAAACGCTCCCG 59.692 50.000 5.77 0.00 41.14 5.14
86 87 2.324860 CATTTTTCCGAAAACGCTCCC 58.675 47.619 5.77 0.00 37.56 4.30
87 88 2.324860 CCATTTTTCCGAAAACGCTCC 58.675 47.619 5.77 0.00 37.56 4.70
88 89 2.324860 CCCATTTTTCCGAAAACGCTC 58.675 47.619 5.77 0.00 37.56 5.03
89 90 1.000394 CCCCATTTTTCCGAAAACGCT 60.000 47.619 5.77 0.00 37.56 5.07
90 91 1.424403 CCCCATTTTTCCGAAAACGC 58.576 50.000 5.77 0.00 37.56 4.84
91 92 2.073117 CCCCCATTTTTCCGAAAACG 57.927 50.000 5.77 1.22 37.56 3.60
108 109 2.683572 GCCACCACCATTTCCCCC 60.684 66.667 0.00 0.00 0.00 5.40
109 110 1.984026 CAGCCACCACCATTTCCCC 60.984 63.158 0.00 0.00 0.00 4.81
110 111 2.649129 GCAGCCACCACCATTTCCC 61.649 63.158 0.00 0.00 0.00 3.97
111 112 2.649129 GGCAGCCACCACCATTTCC 61.649 63.158 6.55 0.00 0.00 3.13
112 113 1.907807 TGGCAGCCACCACCATTTC 60.908 57.895 11.22 0.00 33.75 2.17
113 114 2.200930 TGGCAGCCACCACCATTT 59.799 55.556 11.22 0.00 33.75 2.32
140 141 3.691297 TACTCTTCTCCCCGGGCCC 62.691 68.421 17.73 13.57 0.00 5.80
141 142 2.042230 TACTCTTCTCCCCGGGCC 60.042 66.667 17.73 0.00 0.00 5.80
142 143 2.134933 CCTACTCTTCTCCCCGGGC 61.135 68.421 17.73 0.00 0.00 6.13
143 144 2.134933 GCCTACTCTTCTCCCCGGG 61.135 68.421 15.80 15.80 0.00 5.73
144 145 2.491022 CGCCTACTCTTCTCCCCGG 61.491 68.421 0.00 0.00 0.00 5.73
145 146 3.121019 CGCCTACTCTTCTCCCCG 58.879 66.667 0.00 0.00 0.00 5.73
146 147 2.816012 GCGCCTACTCTTCTCCCC 59.184 66.667 0.00 0.00 0.00 4.81
147 148 2.413765 CGCGCCTACTCTTCTCCC 59.586 66.667 0.00 0.00 0.00 4.30
148 149 2.278923 GCGCGCCTACTCTTCTCC 60.279 66.667 23.24 0.00 0.00 3.71
149 150 2.652496 CGCGCGCCTACTCTTCTC 60.652 66.667 27.72 0.00 0.00 2.87
150 151 4.856607 GCGCGCGCCTACTCTTCT 62.857 66.667 42.83 0.00 34.56 2.85
163 164 3.030308 ATTAGACGGATGCGCGCG 61.030 61.111 28.44 28.44 0.00 6.86
164 165 2.147204 GACATTAGACGGATGCGCGC 62.147 60.000 27.26 27.26 0.00 6.86
165 166 1.548973 GGACATTAGACGGATGCGCG 61.549 60.000 6.51 0.00 0.00 6.86
166 167 0.529773 TGGACATTAGACGGATGCGC 60.530 55.000 6.51 0.00 0.00 6.09
167 168 1.209128 GTGGACATTAGACGGATGCG 58.791 55.000 4.58 4.58 0.00 4.73
168 169 1.209128 CGTGGACATTAGACGGATGC 58.791 55.000 0.00 0.00 0.00 3.91
169 170 1.209128 GCGTGGACATTAGACGGATG 58.791 55.000 0.00 0.00 33.68 3.51
170 171 0.104304 GGCGTGGACATTAGACGGAT 59.896 55.000 0.00 0.00 33.68 4.18
171 172 1.514087 GGCGTGGACATTAGACGGA 59.486 57.895 0.00 0.00 33.68 4.69
172 173 1.876714 CGGCGTGGACATTAGACGG 60.877 63.158 0.00 0.00 33.68 4.79
173 174 1.138036 TCGGCGTGGACATTAGACG 59.862 57.895 6.85 0.00 36.18 4.18
174 175 1.138047 CGTCGGCGTGGACATTAGAC 61.138 60.000 6.85 0.00 36.73 2.59
175 176 1.138036 CGTCGGCGTGGACATTAGA 59.862 57.895 6.85 0.00 36.73 2.10
176 177 2.514013 GCGTCGGCGTGGACATTAG 61.514 63.158 12.58 0.00 40.81 1.73
177 178 2.507547 GCGTCGGCGTGGACATTA 60.508 61.111 12.58 0.00 40.81 1.90
178 179 4.673298 TGCGTCGGCGTGGACATT 62.673 61.111 12.58 0.00 44.10 2.71
179 180 4.673298 TTGCGTCGGCGTGGACAT 62.673 61.111 12.58 0.00 44.10 3.06
180 181 4.893601 TTTGCGTCGGCGTGGACA 62.894 61.111 12.58 0.00 44.10 4.02
181 182 3.362851 GATTTGCGTCGGCGTGGAC 62.363 63.158 12.58 0.00 44.10 4.02
182 183 3.115892 GATTTGCGTCGGCGTGGA 61.116 61.111 12.58 0.00 44.10 4.02
183 184 3.367051 CTGATTTGCGTCGGCGTGG 62.367 63.158 12.58 0.54 44.10 4.94
184 185 2.096406 CTGATTTGCGTCGGCGTG 59.904 61.111 12.58 1.61 44.10 5.34
185 186 2.048597 TCTGATTTGCGTCGGCGT 60.049 55.556 12.58 0.00 44.10 5.68
186 187 2.014093 GAGTCTGATTTGCGTCGGCG 62.014 60.000 4.29 4.29 44.10 6.46
187 188 1.014044 TGAGTCTGATTTGCGTCGGC 61.014 55.000 0.00 0.00 40.52 5.54
188 189 1.428448 TTGAGTCTGATTTGCGTCGG 58.572 50.000 0.00 0.00 0.00 4.79
189 190 3.519908 TTTTGAGTCTGATTTGCGTCG 57.480 42.857 0.00 0.00 0.00 5.12
190 191 4.618489 CCAATTTTGAGTCTGATTTGCGTC 59.382 41.667 0.00 0.00 0.00 5.19
191 192 4.549458 CCAATTTTGAGTCTGATTTGCGT 58.451 39.130 0.00 0.00 0.00 5.24
192 193 3.922240 CCCAATTTTGAGTCTGATTTGCG 59.078 43.478 0.00 0.00 0.00 4.85
193 194 3.681417 GCCCAATTTTGAGTCTGATTTGC 59.319 43.478 0.00 0.00 0.00 3.68
194 195 4.248058 GGCCCAATTTTGAGTCTGATTTG 58.752 43.478 0.00 0.00 0.00 2.32
195 196 3.056607 CGGCCCAATTTTGAGTCTGATTT 60.057 43.478 0.00 0.00 0.00 2.17
196 197 2.493278 CGGCCCAATTTTGAGTCTGATT 59.507 45.455 0.00 0.00 0.00 2.57
197 198 2.094675 CGGCCCAATTTTGAGTCTGAT 58.905 47.619 0.00 0.00 0.00 2.90
198 199 1.533625 CGGCCCAATTTTGAGTCTGA 58.466 50.000 0.00 0.00 0.00 3.27
199 200 0.527565 CCGGCCCAATTTTGAGTCTG 59.472 55.000 0.00 0.00 0.00 3.51
200 201 0.404040 TCCGGCCCAATTTTGAGTCT 59.596 50.000 0.00 0.00 0.00 3.24
201 202 1.253100 TTCCGGCCCAATTTTGAGTC 58.747 50.000 0.00 0.00 0.00 3.36
202 203 1.710816 TTTCCGGCCCAATTTTGAGT 58.289 45.000 0.00 0.00 0.00 3.41
203 204 2.620242 CATTTCCGGCCCAATTTTGAG 58.380 47.619 0.00 0.00 0.00 3.02
204 205 1.277557 CCATTTCCGGCCCAATTTTGA 59.722 47.619 0.00 0.00 0.00 2.69
205 206 1.678425 CCCATTTCCGGCCCAATTTTG 60.678 52.381 0.00 0.00 0.00 2.44
206 207 0.617935 CCCATTTCCGGCCCAATTTT 59.382 50.000 0.00 0.00 0.00 1.82
207 208 0.546507 ACCCATTTCCGGCCCAATTT 60.547 50.000 0.00 0.00 0.00 1.82
208 209 0.975556 GACCCATTTCCGGCCCAATT 60.976 55.000 0.00 0.00 0.00 2.32
209 210 1.381191 GACCCATTTCCGGCCCAAT 60.381 57.895 0.00 0.00 0.00 3.16
210 211 2.036572 GACCCATTTCCGGCCCAA 59.963 61.111 0.00 0.00 0.00 4.12
211 212 4.418328 CGACCCATTTCCGGCCCA 62.418 66.667 0.00 0.00 0.00 5.36
227 228 4.729798 GTTTTTCGTCCGCGGGCG 62.730 66.667 44.15 44.15 38.89 6.13
228 229 4.729798 CGTTTTTCGTCCGCGGGC 62.730 66.667 27.83 25.32 38.89 6.13
229 230 4.079748 CCGTTTTTCGTCCGCGGG 62.080 66.667 27.83 10.69 38.86 6.13
230 231 3.037249 TCCGTTTTTCGTCCGCGG 61.037 61.111 22.12 22.12 43.32 6.46
231 232 2.169327 GTCCGTTTTTCGTCCGCG 59.831 61.111 0.00 0.00 37.94 6.46
232 233 1.083209 GTGTCCGTTTTTCGTCCGC 60.083 57.895 0.00 0.00 37.94 5.54
233 234 1.199859 CGTGTCCGTTTTTCGTCCG 59.800 57.895 0.00 0.00 37.94 4.79
234 235 1.083209 GCGTGTCCGTTTTTCGTCC 60.083 57.895 0.00 0.00 37.94 4.79
235 236 1.435966 CGCGTGTCCGTTTTTCGTC 60.436 57.895 0.00 0.00 37.94 4.20
236 237 2.166579 ACGCGTGTCCGTTTTTCGT 61.167 52.632 12.93 0.00 38.47 3.85
237 238 2.622085 ACGCGTGTCCGTTTTTCG 59.378 55.556 12.93 0.00 38.47 3.46
250 251 4.067016 CCGACCCAAACGAACGCG 62.067 66.667 3.53 3.53 44.79 6.01
251 252 4.379143 GCCGACCCAAACGAACGC 62.379 66.667 0.00 0.00 0.00 4.84
252 253 4.067016 CGCCGACCCAAACGAACG 62.067 66.667 0.00 0.00 0.00 3.95
253 254 4.379143 GCGCCGACCCAAACGAAC 62.379 66.667 0.00 0.00 0.00 3.95
257 258 4.676586 CAACGCGCCGACCCAAAC 62.677 66.667 5.73 0.00 0.00 2.93
268 269 2.621371 AAAAGTGGTTGCCCAACGCG 62.621 55.000 3.53 3.53 44.15 6.01
269 270 1.142965 AAAAGTGGTTGCCCAACGC 59.857 52.632 5.19 1.64 44.15 4.84
270 271 0.174617 ACAAAAGTGGTTGCCCAACG 59.825 50.000 5.19 0.00 44.15 4.10
271 272 1.472552 GGACAAAAGTGGTTGCCCAAC 60.473 52.381 2.60 2.60 44.15 3.77
272 273 0.827368 GGACAAAAGTGGTTGCCCAA 59.173 50.000 0.00 0.00 44.15 4.12
273 274 1.388065 CGGACAAAAGTGGTTGCCCA 61.388 55.000 0.00 0.00 38.87 5.36
274 275 1.362355 CGGACAAAAGTGGTTGCCC 59.638 57.895 0.00 0.00 31.29 5.36
275 276 0.248866 CACGGACAAAAGTGGTTGCC 60.249 55.000 0.00 0.00 34.93 4.52
276 277 0.869880 GCACGGACAAAAGTGGTTGC 60.870 55.000 0.00 0.00 38.68 4.17
277 278 0.248866 GGCACGGACAAAAGTGGTTG 60.249 55.000 0.00 0.00 38.68 3.77
278 279 2.112029 GGCACGGACAAAAGTGGTT 58.888 52.632 0.00 0.00 38.68 3.67
279 280 3.836151 GGCACGGACAAAAGTGGT 58.164 55.556 0.00 0.00 38.68 4.16
292 293 1.209127 CGTTCATTTGGGTCGGCAC 59.791 57.895 0.00 0.00 0.00 5.01
293 294 2.622011 GCGTTCATTTGGGTCGGCA 61.622 57.895 0.00 0.00 0.00 5.69
294 295 2.178273 GCGTTCATTTGGGTCGGC 59.822 61.111 0.00 0.00 0.00 5.54
295 296 2.478746 CGCGTTCATTTGGGTCGG 59.521 61.111 0.00 0.00 0.00 4.79
296 297 2.030401 TCCGCGTTCATTTGGGTCG 61.030 57.895 4.92 0.00 0.00 4.79
297 298 1.500396 GTCCGCGTTCATTTGGGTC 59.500 57.895 4.92 0.00 0.00 4.46
298 299 2.322081 CGTCCGCGTTCATTTGGGT 61.322 57.895 4.92 0.00 0.00 4.51
299 300 2.478746 CGTCCGCGTTCATTTGGG 59.521 61.111 4.92 0.00 0.00 4.12
300 301 2.030401 TCCGTCCGCGTTCATTTGG 61.030 57.895 4.92 0.00 36.15 3.28
301 302 1.131826 GTCCGTCCGCGTTCATTTG 59.868 57.895 4.92 0.00 36.15 2.32
302 303 0.881159 TTGTCCGTCCGCGTTCATTT 60.881 50.000 4.92 0.00 36.15 2.32
303 304 0.881159 TTTGTCCGTCCGCGTTCATT 60.881 50.000 4.92 0.00 36.15 2.57
304 305 0.881159 TTTTGTCCGTCCGCGTTCAT 60.881 50.000 4.92 0.00 36.15 2.57
305 306 0.881159 ATTTTGTCCGTCCGCGTTCA 60.881 50.000 4.92 0.00 36.15 3.18
306 307 0.452122 CATTTTGTCCGTCCGCGTTC 60.452 55.000 4.92 0.00 36.15 3.95
307 308 1.572447 CATTTTGTCCGTCCGCGTT 59.428 52.632 4.92 0.00 36.15 4.84
308 309 2.322081 CCATTTTGTCCGTCCGCGT 61.322 57.895 4.92 0.00 36.15 6.01
309 310 2.478746 CCATTTTGTCCGTCCGCG 59.521 61.111 0.00 0.00 37.95 6.46
310 311 1.918868 GACCCATTTTGTCCGTCCGC 61.919 60.000 0.00 0.00 0.00 5.54
311 312 1.632046 CGACCCATTTTGTCCGTCCG 61.632 60.000 0.00 0.00 0.00 4.79
312 313 1.918868 GCGACCCATTTTGTCCGTCC 61.919 60.000 0.00 0.00 0.00 4.79
313 314 1.500396 GCGACCCATTTTGTCCGTC 59.500 57.895 0.00 0.00 0.00 4.79
314 315 1.969589 GGCGACCCATTTTGTCCGT 60.970 57.895 0.00 0.00 0.00 4.69
315 316 2.874751 GGCGACCCATTTTGTCCG 59.125 61.111 0.00 0.00 0.00 4.79
327 328 0.107654 AGCAACTCTAATGGGGCGAC 60.108 55.000 0.00 0.00 0.00 5.19
328 329 0.178068 GAGCAACTCTAATGGGGCGA 59.822 55.000 0.00 0.00 0.00 5.54
329 330 0.179000 AGAGCAACTCTAATGGGGCG 59.821 55.000 0.00 0.00 39.28 6.13
330 331 2.808567 GCTAGAGCAACTCTAATGGGGC 60.809 54.545 5.87 2.29 41.74 5.80
331 332 3.118905 GCTAGAGCAACTCTAATGGGG 57.881 52.381 5.87 0.00 41.74 4.96
344 345 5.239078 TCAAGAGTTGAGGCTGCTAGAGC 62.239 52.174 0.00 0.00 39.99 4.09
345 346 2.495270 TCAAGAGTTGAGGCTGCTAGAG 59.505 50.000 0.00 0.00 34.08 2.43
346 347 2.232452 GTCAAGAGTTGAGGCTGCTAGA 59.768 50.000 0.00 0.00 41.01 2.43
347 348 2.233431 AGTCAAGAGTTGAGGCTGCTAG 59.767 50.000 0.00 0.00 41.01 3.42
348 349 2.232452 GAGTCAAGAGTTGAGGCTGCTA 59.768 50.000 0.00 0.00 41.01 3.49
349 350 1.001860 GAGTCAAGAGTTGAGGCTGCT 59.998 52.381 0.00 0.00 41.01 4.24
350 351 1.437625 GAGTCAAGAGTTGAGGCTGC 58.562 55.000 0.00 0.00 41.01 5.25
351 352 1.671261 CCGAGTCAAGAGTTGAGGCTG 60.671 57.143 0.00 0.00 41.01 4.85
352 353 0.605589 CCGAGTCAAGAGTTGAGGCT 59.394 55.000 0.00 0.00 41.01 4.58
353 354 1.016653 GCCGAGTCAAGAGTTGAGGC 61.017 60.000 3.48 3.48 41.01 4.70
354 355 0.734253 CGCCGAGTCAAGAGTTGAGG 60.734 60.000 0.00 0.00 41.01 3.86
411 412 1.675641 GCGCTCTGGGTGGTCATTT 60.676 57.895 0.00 0.00 0.00 2.32
437 438 1.067582 CGGAGGCCGGACTACATTC 59.932 63.158 22.70 1.76 44.15 2.67
551 552 0.331954 TAGACGAGACCAGGAGGCTT 59.668 55.000 0.00 0.00 39.06 4.35
553 554 1.716826 CGTAGACGAGACCAGGAGGC 61.717 65.000 0.00 0.00 43.02 4.70
566 569 1.464821 GATTTCTCGCGACCGTAGAC 58.535 55.000 3.71 0.00 35.54 2.59
567 570 0.379669 GGATTTCTCGCGACCGTAGA 59.620 55.000 3.71 0.00 35.54 2.59
569 572 0.099968 CTGGATTTCTCGCGACCGTA 59.900 55.000 3.71 0.00 35.54 4.02
606 609 1.449778 GGGTACAGCTTCCGCCTTC 60.450 63.158 0.00 0.00 36.60 3.46
607 610 1.774894 TTGGGTACAGCTTCCGCCTT 61.775 55.000 0.00 0.00 36.60 4.35
608 611 2.221299 TTGGGTACAGCTTCCGCCT 61.221 57.895 0.00 0.00 36.60 5.52
609 612 2.038837 GTTGGGTACAGCTTCCGCC 61.039 63.158 0.00 0.00 36.60 6.13
610 613 1.003718 AGTTGGGTACAGCTTCCGC 60.004 57.895 0.00 0.00 34.16 5.54
611 614 0.673644 CCAGTTGGGTACAGCTTCCG 60.674 60.000 0.00 0.00 35.86 4.30
643 646 1.785951 GCGTCTGGAGTTTAACGGC 59.214 57.895 0.00 0.00 35.74 5.68
733 736 9.360093 TGTCGTTGTTGTTGAAATTTTCTATTT 57.640 25.926 10.33 0.00 0.00 1.40
760 763 1.769026 ACGAGAGAGCTAGCCAATGA 58.231 50.000 12.13 0.00 0.00 2.57
769 772 1.667467 GCAGAACGAAACGAGAGAGCT 60.667 52.381 0.00 0.00 0.00 4.09
771 774 2.339728 AGCAGAACGAAACGAGAGAG 57.660 50.000 0.00 0.00 0.00 3.20
777 780 0.179307 CGACGAAGCAGAACGAAACG 60.179 55.000 0.00 0.00 0.00 3.60
779 782 0.850217 CACGACGAAGCAGAACGAAA 59.150 50.000 0.00 0.00 0.00 3.46
782 785 1.337817 CTCCACGACGAAGCAGAACG 61.338 60.000 0.00 0.00 0.00 3.95
783 786 0.039437 TCTCCACGACGAAGCAGAAC 60.039 55.000 0.00 0.00 0.00 3.01
786 789 1.444553 GGTCTCCACGACGAAGCAG 60.445 63.158 0.00 0.00 43.79 4.24
813 816 0.591170 AATTGGTTGTCGGCGTCAAG 59.409 50.000 19.19 0.00 0.00 3.02
815 818 1.231958 GGAATTGGTTGTCGGCGTCA 61.232 55.000 6.85 4.29 0.00 4.35
819 822 0.173255 CCATGGAATTGGTTGTCGGC 59.827 55.000 5.56 0.00 31.74 5.54
820 823 0.173255 GCCATGGAATTGGTTGTCGG 59.827 55.000 18.40 0.00 39.11 4.79
821 824 0.179166 CGCCATGGAATTGGTTGTCG 60.179 55.000 18.40 0.68 39.11 4.35
828 831 2.287788 GCCTATGAACGCCATGGAATTG 60.288 50.000 18.40 3.89 35.98 2.32
838 848 0.179056 TAGCTTGGGCCTATGAACGC 60.179 55.000 4.53 0.00 39.73 4.84
849 859 2.365105 TCCTCCCCGTAGCTTGGG 60.365 66.667 15.23 15.23 46.93 4.12
861 871 2.610859 TGGCCAGGGTTCTCCTCC 60.611 66.667 0.00 0.00 46.12 4.30
864 874 2.034221 GTGTGGCCAGGGTTCTCC 59.966 66.667 5.11 0.00 0.00 3.71
926 947 8.464404 GTTATAAAAATGGGGAGGAAACTGTAC 58.536 37.037 0.00 0.00 44.43 2.90
931 952 5.126545 AGCGTTATAAAAATGGGGAGGAAAC 59.873 40.000 0.00 0.00 0.00 2.78
1180 1240 2.303022 TGCTCAGGAGGTTCTTCGAATT 59.697 45.455 0.00 0.00 0.00 2.17
1181 1241 1.902508 TGCTCAGGAGGTTCTTCGAAT 59.097 47.619 0.00 0.00 0.00 3.34
1182 1242 1.273606 CTGCTCAGGAGGTTCTTCGAA 59.726 52.381 0.00 0.00 0.00 3.71
1183 1243 0.891373 CTGCTCAGGAGGTTCTTCGA 59.109 55.000 0.00 0.00 0.00 3.71
1184 1244 0.739112 GCTGCTCAGGAGGTTCTTCG 60.739 60.000 0.00 0.00 0.00 3.79
1185 1245 0.739112 CGCTGCTCAGGAGGTTCTTC 60.739 60.000 0.00 0.00 0.00 2.87
1550 1669 1.007734 GACGACGTGAGGTTCTGCA 60.008 57.895 4.58 0.00 0.00 4.41
1662 1793 1.073216 GTGTGCTCAGATCGACGGTG 61.073 60.000 0.00 0.00 0.00 4.94
1870 3081 2.511373 TCGCCGCCATAGCAACAG 60.511 61.111 0.00 0.00 39.83 3.16
1888 3105 7.276438 GTCCTCATTTGCCTTCATTTTATTGTC 59.724 37.037 0.00 0.00 0.00 3.18
1917 3134 1.301165 GTGGGCGTACCGTTCTTGT 60.301 57.895 0.00 0.00 44.64 3.16
1992 3209 3.286751 GTTGCGGCAACCAGCTCA 61.287 61.111 30.48 0.00 44.79 4.26
2078 3295 3.625897 CGGGTGAGGGTGTGAGCA 61.626 66.667 0.00 0.00 0.00 4.26
2442 3856 0.609131 CCCCGAGTTTGGTGCTCATT 60.609 55.000 0.00 0.00 33.45 2.57
2508 3922 4.204028 AGCACGGCCTTGGTGGTT 62.204 61.111 13.83 0.00 42.96 3.67
2733 4147 2.043852 GCCTCGTCTCCCCTCAGA 60.044 66.667 0.00 0.00 0.00 3.27
3106 5825 3.128415 CGATGCATGGTGGATGTAACAAA 59.872 43.478 2.46 0.00 34.14 2.83
3146 5865 2.223852 GGTTTAGCCGCAACTTTTCCAA 60.224 45.455 0.00 0.00 0.00 3.53
3150 5869 2.293399 CTCAGGTTTAGCCGCAACTTTT 59.707 45.455 0.00 0.00 43.70 2.27
3172 5892 2.036733 TGATACTACCATTACGGGCAGC 59.963 50.000 0.00 0.00 40.22 5.25
3173 5893 4.537135 ATGATACTACCATTACGGGCAG 57.463 45.455 0.00 0.00 40.22 4.85
3174 5894 4.464951 CCTATGATACTACCATTACGGGCA 59.535 45.833 0.00 0.00 40.22 5.36
3175 5895 4.465305 ACCTATGATACTACCATTACGGGC 59.535 45.833 0.00 0.00 40.22 6.13
3176 5896 6.888632 ACTACCTATGATACTACCATTACGGG 59.111 42.308 0.00 0.00 40.22 5.28
3177 5897 7.934855 ACTACCTATGATACTACCATTACGG 57.065 40.000 0.00 0.00 42.50 4.02
3182 5902 9.137459 GCATGATACTACCTATGATACTACCAT 57.863 37.037 0.00 0.00 0.00 3.55
3183 5903 8.113462 TGCATGATACTACCTATGATACTACCA 58.887 37.037 0.00 0.00 0.00 3.25
3184 5904 8.521170 TGCATGATACTACCTATGATACTACC 57.479 38.462 0.00 0.00 0.00 3.18
3185 5905 9.958234 CATGCATGATACTACCTATGATACTAC 57.042 37.037 22.59 0.00 0.00 2.73
3186 5906 8.633561 GCATGCATGATACTACCTATGATACTA 58.366 37.037 30.64 0.00 0.00 1.82
3187 5907 7.418368 GGCATGCATGATACTACCTATGATACT 60.418 40.741 30.64 0.00 0.00 2.12
3188 5908 6.703607 GGCATGCATGATACTACCTATGATAC 59.296 42.308 30.64 5.71 0.00 2.24
3189 5909 6.383726 TGGCATGCATGATACTACCTATGATA 59.616 38.462 30.64 0.87 0.00 2.15
3190 5910 5.190330 TGGCATGCATGATACTACCTATGAT 59.810 40.000 30.64 0.00 0.00 2.45
3191 5911 4.531732 TGGCATGCATGATACTACCTATGA 59.468 41.667 30.64 1.93 0.00 2.15
3192 5912 4.835678 TGGCATGCATGATACTACCTATG 58.164 43.478 30.64 0.23 0.00 2.23
3193 5913 5.013495 AGTTGGCATGCATGATACTACCTAT 59.987 40.000 30.64 7.77 0.00 2.57
3194 5914 4.347876 AGTTGGCATGCATGATACTACCTA 59.652 41.667 30.64 13.97 0.00 3.08
3195 5915 3.137176 AGTTGGCATGCATGATACTACCT 59.863 43.478 30.64 11.98 0.00 3.08
3196 5916 3.480470 AGTTGGCATGCATGATACTACC 58.520 45.455 30.64 19.65 0.00 3.18
3197 5917 5.334414 GCTTAGTTGGCATGCATGATACTAC 60.334 44.000 30.64 22.16 0.00 2.73
3198 5918 4.756642 GCTTAGTTGGCATGCATGATACTA 59.243 41.667 30.64 25.19 0.00 1.82
3199 5919 3.567164 GCTTAGTTGGCATGCATGATACT 59.433 43.478 30.64 26.11 0.00 2.12
3200 5920 3.316029 TGCTTAGTTGGCATGCATGATAC 59.684 43.478 30.64 21.28 34.56 2.24
3201 5921 3.553904 TGCTTAGTTGGCATGCATGATA 58.446 40.909 30.64 14.66 34.56 2.15
3202 5922 2.380941 TGCTTAGTTGGCATGCATGAT 58.619 42.857 30.64 11.73 34.56 2.45
3203 5923 1.836802 TGCTTAGTTGGCATGCATGA 58.163 45.000 30.64 7.50 34.56 3.07
3204 5924 2.658373 TTGCTTAGTTGGCATGCATG 57.342 45.000 22.70 22.70 39.54 4.06
3205 5925 3.899052 AATTGCTTAGTTGGCATGCAT 57.101 38.095 21.36 4.57 39.54 3.96
3206 5926 3.681593 AAATTGCTTAGTTGGCATGCA 57.318 38.095 21.36 2.54 39.54 3.96
3207 5927 3.747529 ACAAAATTGCTTAGTTGGCATGC 59.252 39.130 9.90 9.90 39.54 4.06
3208 5928 5.466058 TCAACAAAATTGCTTAGTTGGCATG 59.534 36.000 0.00 0.00 39.84 4.06
3209 5929 5.609423 TCAACAAAATTGCTTAGTTGGCAT 58.391 33.333 0.00 0.00 39.84 4.40
3210 5930 5.016051 TCAACAAAATTGCTTAGTTGGCA 57.984 34.783 0.00 0.00 39.84 4.92
3211 5931 5.288804 TCTCAACAAAATTGCTTAGTTGGC 58.711 37.500 0.00 0.00 39.84 4.52
3212 5932 7.115378 GTCATCTCAACAAAATTGCTTAGTTGG 59.885 37.037 0.00 0.00 39.84 3.77
3213 5933 7.648908 TGTCATCTCAACAAAATTGCTTAGTTG 59.351 33.333 0.00 0.00 40.53 3.16
3214 5934 7.649306 GTGTCATCTCAACAAAATTGCTTAGTT 59.351 33.333 0.00 0.00 0.00 2.24
3215 5935 7.141363 GTGTCATCTCAACAAAATTGCTTAGT 58.859 34.615 0.00 0.00 0.00 2.24
3216 5936 7.140705 TGTGTCATCTCAACAAAATTGCTTAG 58.859 34.615 0.00 0.00 0.00 2.18
3217 5937 7.013178 TCTGTGTCATCTCAACAAAATTGCTTA 59.987 33.333 0.00 0.00 0.00 3.09
3218 5938 5.904941 TGTGTCATCTCAACAAAATTGCTT 58.095 33.333 0.00 0.00 0.00 3.91
3219 5939 5.300034 TCTGTGTCATCTCAACAAAATTGCT 59.700 36.000 0.00 0.00 0.00 3.91
3220 5940 5.522456 TCTGTGTCATCTCAACAAAATTGC 58.478 37.500 0.00 0.00 0.00 3.56
3221 5941 9.681692 TTATTCTGTGTCATCTCAACAAAATTG 57.318 29.630 0.00 0.00 0.00 2.32
3225 5945 9.681692 CATTTTATTCTGTGTCATCTCAACAAA 57.318 29.630 0.00 0.00 0.00 2.83
3226 5946 9.065798 TCATTTTATTCTGTGTCATCTCAACAA 57.934 29.630 0.00 0.00 0.00 2.83
3227 5947 8.620116 TCATTTTATTCTGTGTCATCTCAACA 57.380 30.769 0.00 0.00 0.00 3.33
3228 5948 9.552114 CTTCATTTTATTCTGTGTCATCTCAAC 57.448 33.333 0.00 0.00 0.00 3.18
3229 5949 9.506018 TCTTCATTTTATTCTGTGTCATCTCAA 57.494 29.630 0.00 0.00 0.00 3.02
3230 5950 8.939929 GTCTTCATTTTATTCTGTGTCATCTCA 58.060 33.333 0.00 0.00 0.00 3.27
3231 5951 8.939929 TGTCTTCATTTTATTCTGTGTCATCTC 58.060 33.333 0.00 0.00 0.00 2.75
3232 5952 8.853077 TGTCTTCATTTTATTCTGTGTCATCT 57.147 30.769 0.00 0.00 0.00 2.90
3233 5953 8.939929 TCTGTCTTCATTTTATTCTGTGTCATC 58.060 33.333 0.00 0.00 0.00 2.92
3234 5954 8.853077 TCTGTCTTCATTTTATTCTGTGTCAT 57.147 30.769 0.00 0.00 0.00 3.06
3235 5955 8.150296 TCTCTGTCTTCATTTTATTCTGTGTCA 58.850 33.333 0.00 0.00 0.00 3.58
3236 5956 8.539770 TCTCTGTCTTCATTTTATTCTGTGTC 57.460 34.615 0.00 0.00 0.00 3.67
3237 5957 8.944029 CATCTCTGTCTTCATTTTATTCTGTGT 58.056 33.333 0.00 0.00 0.00 3.72
3238 5958 7.909121 GCATCTCTGTCTTCATTTTATTCTGTG 59.091 37.037 0.00 0.00 0.00 3.66
3239 5959 7.828223 AGCATCTCTGTCTTCATTTTATTCTGT 59.172 33.333 0.00 0.00 0.00 3.41
3240 5960 8.211116 AGCATCTCTGTCTTCATTTTATTCTG 57.789 34.615 0.00 0.00 0.00 3.02
3241 5961 8.675504 CAAGCATCTCTGTCTTCATTTTATTCT 58.324 33.333 0.00 0.00 0.00 2.40
3242 5962 8.671921 TCAAGCATCTCTGTCTTCATTTTATTC 58.328 33.333 0.00 0.00 0.00 1.75
3243 5963 8.571461 TCAAGCATCTCTGTCTTCATTTTATT 57.429 30.769 0.00 0.00 0.00 1.40
3244 5964 7.828223 ACTCAAGCATCTCTGTCTTCATTTTAT 59.172 33.333 0.00 0.00 0.00 1.40
3245 5965 7.164122 ACTCAAGCATCTCTGTCTTCATTTTA 58.836 34.615 0.00 0.00 0.00 1.52
3246 5966 6.002704 ACTCAAGCATCTCTGTCTTCATTTT 58.997 36.000 0.00 0.00 0.00 1.82
3247 5967 5.558818 ACTCAAGCATCTCTGTCTTCATTT 58.441 37.500 0.00 0.00 0.00 2.32
3248 5968 5.163281 ACTCAAGCATCTCTGTCTTCATT 57.837 39.130 0.00 0.00 0.00 2.57
3249 5969 4.822685 ACTCAAGCATCTCTGTCTTCAT 57.177 40.909 0.00 0.00 0.00 2.57
3250 5970 5.420104 TGATACTCAAGCATCTCTGTCTTCA 59.580 40.000 0.00 0.00 0.00 3.02
3251 5971 5.900425 TGATACTCAAGCATCTCTGTCTTC 58.100 41.667 0.00 0.00 0.00 2.87
3252 5972 5.929058 TGATACTCAAGCATCTCTGTCTT 57.071 39.130 0.00 0.00 0.00 3.01
3253 5973 7.450944 TGATATGATACTCAAGCATCTCTGTCT 59.549 37.037 0.00 0.00 0.00 3.41
3254 5974 7.600960 TGATATGATACTCAAGCATCTCTGTC 58.399 38.462 0.00 0.00 0.00 3.51
3255 5975 7.536159 TGATATGATACTCAAGCATCTCTGT 57.464 36.000 0.00 0.00 0.00 3.41
3256 5976 8.251721 TCATGATATGATACTCAAGCATCTCTG 58.748 37.037 0.00 0.00 33.59 3.35
3257 5977 8.363761 TCATGATATGATACTCAAGCATCTCT 57.636 34.615 0.00 0.00 33.59 3.10
3293 6013 9.225436 TGACACAAAGTAGCACATCATTTAATA 57.775 29.630 0.00 0.00 0.00 0.98
3294 6014 8.109705 TGACACAAAGTAGCACATCATTTAAT 57.890 30.769 0.00 0.00 0.00 1.40
3295 6015 7.503521 TGACACAAAGTAGCACATCATTTAA 57.496 32.000 0.00 0.00 0.00 1.52
3296 6016 7.529158 CATGACACAAAGTAGCACATCATTTA 58.471 34.615 0.00 0.00 0.00 1.40
3297 6017 6.384224 CATGACACAAAGTAGCACATCATTT 58.616 36.000 0.00 0.00 0.00 2.32
3298 6018 5.620654 GCATGACACAAAGTAGCACATCATT 60.621 40.000 0.00 0.00 0.00 2.57
3299 6019 4.142534 GCATGACACAAAGTAGCACATCAT 60.143 41.667 0.00 0.00 0.00 2.45
3300 6020 3.189080 GCATGACACAAAGTAGCACATCA 59.811 43.478 0.00 0.00 0.00 3.07
3301 6021 3.189080 TGCATGACACAAAGTAGCACATC 59.811 43.478 0.00 0.00 30.65 3.06
3302 6022 3.148412 TGCATGACACAAAGTAGCACAT 58.852 40.909 0.00 0.00 30.65 3.21
3303 6023 2.570135 TGCATGACACAAAGTAGCACA 58.430 42.857 0.00 0.00 30.65 4.57
3304 6024 3.189080 TCATGCATGACACAAAGTAGCAC 59.811 43.478 25.42 0.00 36.06 4.40
3305 6025 3.410508 TCATGCATGACACAAAGTAGCA 58.589 40.909 25.42 0.00 37.13 3.49
3337 6057 9.909644 GTATCAACGTTGGTATCATAGAGTATT 57.090 33.333 27.02 0.00 0.00 1.89
3338 6058 9.298250 AGTATCAACGTTGGTATCATAGAGTAT 57.702 33.333 27.02 11.25 0.00 2.12
3339 6059 8.687292 AGTATCAACGTTGGTATCATAGAGTA 57.313 34.615 27.02 4.22 0.00 2.59
3340 6060 7.584122 AGTATCAACGTTGGTATCATAGAGT 57.416 36.000 27.02 4.14 0.00 3.24
3341 6061 8.873215 AAAGTATCAACGTTGGTATCATAGAG 57.127 34.615 27.02 0.00 0.00 2.43
3349 6069 8.655092 CCGTAATTTAAAGTATCAACGTTGGTA 58.345 33.333 27.02 22.28 0.00 3.25
3350 6070 7.387397 TCCGTAATTTAAAGTATCAACGTTGGT 59.613 33.333 27.02 23.44 0.00 3.67
3351 6071 7.741198 TCCGTAATTTAAAGTATCAACGTTGG 58.259 34.615 27.02 9.69 0.00 3.77
3401 6121 9.058174 GGAGTATCATATACTAGTATCGTGCAT 57.942 37.037 18.68 14.45 36.25 3.96
3402 6122 8.265764 AGGAGTATCATATACTAGTATCGTGCA 58.734 37.037 18.68 1.71 36.25 4.57
3403 6123 8.665643 AGGAGTATCATATACTAGTATCGTGC 57.334 38.462 18.68 7.48 36.25 5.34
3404 6124 9.819267 TGAGGAGTATCATATACTAGTATCGTG 57.181 37.037 18.68 17.37 36.25 4.35
3416 6136 9.277783 GTGCTTTTGTAATGAGGAGTATCATAT 57.722 33.333 0.00 0.00 39.00 1.78
3417 6137 8.264347 TGTGCTTTTGTAATGAGGAGTATCATA 58.736 33.333 0.00 0.00 39.00 2.15
3418 6138 7.066284 GTGTGCTTTTGTAATGAGGAGTATCAT 59.934 37.037 0.00 0.00 41.72 2.45
3419 6139 6.371548 GTGTGCTTTTGTAATGAGGAGTATCA 59.628 38.462 0.00 0.00 36.25 2.15
3420 6140 6.183360 GGTGTGCTTTTGTAATGAGGAGTATC 60.183 42.308 0.00 0.00 0.00 2.24
3421 6141 5.648092 GGTGTGCTTTTGTAATGAGGAGTAT 59.352 40.000 0.00 0.00 0.00 2.12
3422 6142 5.001232 GGTGTGCTTTTGTAATGAGGAGTA 58.999 41.667 0.00 0.00 0.00 2.59
3423 6143 3.821033 GGTGTGCTTTTGTAATGAGGAGT 59.179 43.478 0.00 0.00 0.00 3.85
3424 6144 3.820467 TGGTGTGCTTTTGTAATGAGGAG 59.180 43.478 0.00 0.00 0.00 3.69
3425 6145 3.568007 GTGGTGTGCTTTTGTAATGAGGA 59.432 43.478 0.00 0.00 0.00 3.71
3426 6146 3.305335 GGTGGTGTGCTTTTGTAATGAGG 60.305 47.826 0.00 0.00 0.00 3.86
3427 6147 3.305335 GGGTGGTGTGCTTTTGTAATGAG 60.305 47.826 0.00 0.00 0.00 2.90
3428 6148 2.625790 GGGTGGTGTGCTTTTGTAATGA 59.374 45.455 0.00 0.00 0.00 2.57
3429 6149 2.363680 TGGGTGGTGTGCTTTTGTAATG 59.636 45.455 0.00 0.00 0.00 1.90
3430 6150 2.672098 TGGGTGGTGTGCTTTTGTAAT 58.328 42.857 0.00 0.00 0.00 1.89
3431 6151 2.145397 TGGGTGGTGTGCTTTTGTAA 57.855 45.000 0.00 0.00 0.00 2.41
3432 6152 2.373335 ATGGGTGGTGTGCTTTTGTA 57.627 45.000 0.00 0.00 0.00 2.41
3433 6153 1.494960 AATGGGTGGTGTGCTTTTGT 58.505 45.000 0.00 0.00 0.00 2.83
3434 6154 2.618442 AAATGGGTGGTGTGCTTTTG 57.382 45.000 0.00 0.00 0.00 2.44
3435 6155 4.159557 AGATAAATGGGTGGTGTGCTTTT 58.840 39.130 0.00 0.00 0.00 2.27
3436 6156 3.778265 AGATAAATGGGTGGTGTGCTTT 58.222 40.909 0.00 0.00 0.00 3.51
3437 6157 3.456380 AGATAAATGGGTGGTGTGCTT 57.544 42.857 0.00 0.00 0.00 3.91
3443 6163 9.438163 AAATGAATGATTAGATAAATGGGTGGT 57.562 29.630 0.00 0.00 0.00 4.16
3460 6180 1.398041 CGCGAGGCAGAAAATGAATGA 59.602 47.619 0.00 0.00 0.00 2.57
3510 6230 6.211184 ACCAAATGTGCTTTCATATGGAAGAA 59.789 34.615 25.34 14.06 36.72 2.52
3511 6231 5.716228 ACCAAATGTGCTTTCATATGGAAGA 59.284 36.000 25.34 6.98 36.72 2.87
3514 6234 5.015515 TGACCAAATGTGCTTTCATATGGA 58.984 37.500 2.13 0.00 0.00 3.41
3518 6238 6.839124 AGATTGACCAAATGTGCTTTCATA 57.161 33.333 0.00 0.00 0.00 2.15
3526 6246 2.988493 CCGCAAAGATTGACCAAATGTG 59.012 45.455 0.00 0.00 0.00 3.21
3535 6255 3.348647 TTCCTGATCCGCAAAGATTGA 57.651 42.857 0.00 0.00 0.00 2.57
3565 7481 8.071368 GGAATTTTCGTTCACACATTGTAGTTA 58.929 33.333 0.00 0.00 0.00 2.24
3582 7498 9.946418 GGTTTTAAAATGAATACGGAATTTTCG 57.054 29.630 3.52 0.00 35.64 3.46
3586 7502 9.990360 AACTGGTTTTAAAATGAATACGGAATT 57.010 25.926 3.52 0.00 0.00 2.17
3603 7519 7.597288 ATTCTGCTTACCTTTAACTGGTTTT 57.403 32.000 4.85 0.00 38.88 2.43
3623 7539 7.288852 AGCTGAGTGTTATATGTCAGGTATTCT 59.711 37.037 1.23 0.00 43.97 2.40
3699 7621 7.691158 ACGCTTTTATATTTCTTTACGGAAGG 58.309 34.615 1.66 0.00 35.98 3.46
3700 7622 9.550811 AAACGCTTTTATATTTCTTTACGGAAG 57.449 29.630 0.00 0.00 36.67 3.46
3730 7652 9.865321 AGAAGCGTTACATCATTAAAGTAGTTA 57.135 29.630 0.00 0.00 0.00 2.24
3731 7653 8.773404 AGAAGCGTTACATCATTAAAGTAGTT 57.227 30.769 0.00 0.00 0.00 2.24
3732 7654 8.773404 AAGAAGCGTTACATCATTAAAGTAGT 57.227 30.769 0.00 0.00 0.00 2.73
3742 7664 9.594478 TCAAGAAATATAAGAAGCGTTACATCA 57.406 29.630 0.00 0.00 0.00 3.07
3745 7667 8.879759 CCTTCAAGAAATATAAGAAGCGTTACA 58.120 33.333 0.00 0.00 35.54 2.41
3746 7668 9.095065 TCCTTCAAGAAATATAAGAAGCGTTAC 57.905 33.333 0.00 0.00 35.54 2.50
3747 7669 9.314321 CTCCTTCAAGAAATATAAGAAGCGTTA 57.686 33.333 0.00 0.00 35.54 3.18
3748 7670 7.281100 CCTCCTTCAAGAAATATAAGAAGCGTT 59.719 37.037 0.00 0.00 35.54 4.84
3749 7671 6.763610 CCTCCTTCAAGAAATATAAGAAGCGT 59.236 38.462 0.00 0.00 35.54 5.07
3750 7672 6.986817 TCCTCCTTCAAGAAATATAAGAAGCG 59.013 38.462 0.00 0.00 35.54 4.68
3751 7673 8.738645 TTCCTCCTTCAAGAAATATAAGAAGC 57.261 34.615 0.00 0.00 35.54 3.86
3752 7674 9.898152 ACTTCCTCCTTCAAGAAATATAAGAAG 57.102 33.333 0.00 0.00 36.38 2.85
3759 7681 9.862149 AAAAAGTACTTCCTCCTTCAAGAAATA 57.138 29.630 8.95 0.00 0.00 1.40
3760 7682 8.768501 AAAAAGTACTTCCTCCTTCAAGAAAT 57.231 30.769 8.95 0.00 0.00 2.17
3789 7711 5.067023 GTGAGGGGAAAGAAAGATATTGCAG 59.933 44.000 0.00 0.00 0.00 4.41
3792 7714 7.613411 AGAAAGTGAGGGGAAAGAAAGATATTG 59.387 37.037 0.00 0.00 0.00 1.90
3812 7734 2.108425 GGGAGGAAAAGGGTGAGAAAGT 59.892 50.000 0.00 0.00 0.00 2.66
3827 7749 1.056660 GGATAGAAATGGCGGGAGGA 58.943 55.000 0.00 0.00 0.00 3.71
3904 7845 6.693545 CCTACGATGATGTGAAGAGTAGAAAC 59.306 42.308 0.00 0.00 33.88 2.78
3925 7866 0.543749 AGGTTCAGAGCATGCCCTAC 59.456 55.000 15.66 3.57 30.66 3.18
3935 7877 4.061596 GTGAAGTTTGGAGAGGTTCAGAG 58.938 47.826 0.00 0.00 0.00 3.35
4002 7944 2.280797 AACGCTTTCTGCTCGCCA 60.281 55.556 0.00 0.00 40.11 5.69
4023 7965 1.153667 GGAGAAGCCGAGACAGCAG 60.154 63.158 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.