Multiple sequence alignment - TraesCS7B01G415400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G415400 chr7B 100.000 3341 0 0 1 3341 683104753 683108093 0.000000e+00 6170.0
1 TraesCS7B01G415400 chr7B 87.068 2227 252 20 961 3182 683243816 683241621 0.000000e+00 2484.0
2 TraesCS7B01G415400 chr7B 86.602 2254 270 14 961 3206 682842158 682844387 0.000000e+00 2460.0
3 TraesCS7B01G415400 chr7B 90.882 1338 116 4 1863 3196 683151371 683152706 0.000000e+00 1790.0
4 TraesCS7B01G415400 chr7A 94.211 2470 113 12 770 3226 694196218 694198670 0.000000e+00 3742.0
5 TraesCS7B01G415400 chr7A 85.970 2231 232 38 1023 3206 694254329 694252133 0.000000e+00 2311.0
6 TraesCS7B01G415400 chr7A 85.289 2216 275 29 981 3180 694331922 694329742 0.000000e+00 2239.0
7 TraesCS7B01G415400 chr7A 85.780 2159 250 25 961 3106 694375908 694373794 0.000000e+00 2233.0
8 TraesCS7B01G415400 chr7A 91.655 707 37 9 1370 2073 694141447 694142134 0.000000e+00 959.0
9 TraesCS7B01G415400 chr7A 91.211 512 43 2 1 512 694132647 694133156 0.000000e+00 695.0
10 TraesCS7B01G415400 chr7A 89.189 333 34 2 180 512 694195428 694195758 6.670000e-112 414.0
11 TraesCS7B01G415400 chr7A 91.905 210 15 2 561 770 694195951 694196158 3.260000e-75 292.0
12 TraesCS7B01G415400 chr7A 95.455 110 5 0 597 706 694135336 694135445 3.430000e-40 176.0
13 TraesCS7B01G415400 chr7A 88.489 139 7 5 77 210 84663826 84663960 3.450000e-35 159.0
14 TraesCS7B01G415400 chr7A 91.071 56 5 0 47 102 167952152 167952207 3.570000e-10 76.8
15 TraesCS7B01G415400 chr7D 87.118 2228 258 19 961 3182 602751527 602749323 0.000000e+00 2497.0
16 TraesCS7B01G415400 chr7D 85.568 2252 270 27 983 3206 602664467 602662243 0.000000e+00 2307.0
17 TraesCS7B01G415400 chr7D 84.076 2223 308 26 967 3180 602723580 602721395 0.000000e+00 2102.0
18 TraesCS7B01G415400 chr7D 85.749 1649 201 21 1041 2676 602673521 602671894 0.000000e+00 1712.0
19 TraesCS7B01G415400 chr7D 84.938 1620 219 14 1417 3027 602626909 602628512 0.000000e+00 1616.0
20 TraesCS7B01G415400 chr7D 88.966 145 10 3 68 207 589050751 589050894 1.230000e-39 174.0
21 TraesCS7B01G415400 chr6B 94.231 208 10 2 1 207 647707271 647707477 1.930000e-82 316.0
22 TraesCS7B01G415400 chr6B 95.238 42 2 0 3300 3341 611354769 611354810 2.150000e-07 67.6
23 TraesCS7B01G415400 chr1A 94.231 208 10 2 1 207 24453376 24453170 1.930000e-82 316.0
24 TraesCS7B01G415400 chrUn 93.269 208 12 2 1 207 50896418 50896624 4.190000e-79 305.0
25 TraesCS7B01G415400 chr4B 93.269 208 12 2 1 207 30851331 30851125 4.190000e-79 305.0
26 TraesCS7B01G415400 chr5A 90.789 152 9 3 61 207 13049554 13049705 7.310000e-47 198.0
27 TraesCS7B01G415400 chr3B 88.235 136 10 3 77 207 817194374 817194240 1.240000e-34 158.0
28 TraesCS7B01G415400 chr3A 84.348 115 18 0 3226 3340 150793796 150793910 2.720000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G415400 chr7B 683104753 683108093 3340 False 6170.000000 6170 100.000000 1 3341 1 chr7B.!!$F2 3340
1 TraesCS7B01G415400 chr7B 683241621 683243816 2195 True 2484.000000 2484 87.068000 961 3182 1 chr7B.!!$R1 2221
2 TraesCS7B01G415400 chr7B 682842158 682844387 2229 False 2460.000000 2460 86.602000 961 3206 1 chr7B.!!$F1 2245
3 TraesCS7B01G415400 chr7B 683151371 683152706 1335 False 1790.000000 1790 90.882000 1863 3196 1 chr7B.!!$F3 1333
4 TraesCS7B01G415400 chr7A 694252133 694254329 2196 True 2311.000000 2311 85.970000 1023 3206 1 chr7A.!!$R1 2183
5 TraesCS7B01G415400 chr7A 694329742 694331922 2180 True 2239.000000 2239 85.289000 981 3180 1 chr7A.!!$R2 2199
6 TraesCS7B01G415400 chr7A 694373794 694375908 2114 True 2233.000000 2233 85.780000 961 3106 1 chr7A.!!$R3 2145
7 TraesCS7B01G415400 chr7A 694195428 694198670 3242 False 1482.666667 3742 91.768333 180 3226 3 chr7A.!!$F5 3046
8 TraesCS7B01G415400 chr7A 694141447 694142134 687 False 959.000000 959 91.655000 1370 2073 1 chr7A.!!$F3 703
9 TraesCS7B01G415400 chr7A 694132647 694135445 2798 False 435.500000 695 93.333000 1 706 2 chr7A.!!$F4 705
10 TraesCS7B01G415400 chr7D 602749323 602751527 2204 True 2497.000000 2497 87.118000 961 3182 1 chr7D.!!$R4 2221
11 TraesCS7B01G415400 chr7D 602662243 602664467 2224 True 2307.000000 2307 85.568000 983 3206 1 chr7D.!!$R1 2223
12 TraesCS7B01G415400 chr7D 602721395 602723580 2185 True 2102.000000 2102 84.076000 967 3180 1 chr7D.!!$R3 2213
13 TraesCS7B01G415400 chr7D 602671894 602673521 1627 True 1712.000000 1712 85.749000 1041 2676 1 chr7D.!!$R2 1635
14 TraesCS7B01G415400 chr7D 602626909 602628512 1603 False 1616.000000 1616 84.938000 1417 3027 1 chr7D.!!$F2 1610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 375 0.112412 ACTGGCGTCAGGGGATTTTT 59.888 50.0 22.98 0.00 44.99 1.94 F
551 2651 0.330604 AGACCTCCATGCATGCAACT 59.669 50.0 26.68 6.15 0.00 3.16 F
1297 3479 0.320374 TAGCTTCACCACCACCTTCG 59.680 55.0 0.00 0.00 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1297 3479 0.035439 TCCGGAGTGATTTGGAAGGC 60.035 55.0 0.00 0.0 0.00 4.35 R
2338 4615 0.417841 AGACAAGGAGGAGCCCCTTA 59.582 55.0 8.39 0.0 44.53 2.69 R
3242 5531 0.109532 TGGAAACCTTGCGATGGTGA 59.890 50.0 0.00 0.0 37.93 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.028938 TGAAGAATAAGTTAAGAGCCAAAATGC 58.971 33.333 0.00 0.00 0.00 3.56
48 49 1.135112 GTTAAGAGCCAAAATGCGGGG 60.135 52.381 0.00 0.00 36.02 5.73
52 53 1.305213 AGCCAAAATGCGGGGACAT 60.305 52.632 0.00 0.00 36.02 3.06
98 99 6.363473 ACTTTTCTTGAGCGTAAATTCTTCG 58.637 36.000 0.00 0.00 0.00 3.79
158 159 7.289317 TCCAAAAGGGTGATCGTAGAGTTATAT 59.711 37.037 0.00 0.00 37.86 0.86
217 218 5.295787 TGGAGACACTGTTGTTGTTGTTATC 59.704 40.000 0.00 0.00 35.47 1.75
234 235 2.805313 ATCTGCGAGGAGGGGACACA 62.805 60.000 0.00 0.00 0.00 3.72
235 236 2.525629 TGCGAGGAGGGGACACAA 60.526 61.111 0.00 0.00 0.00 3.33
374 375 0.112412 ACTGGCGTCAGGGGATTTTT 59.888 50.000 22.98 0.00 44.99 1.94
434 435 2.926420 AAACGCCGTGCCCCATTTC 61.926 57.895 0.00 0.00 0.00 2.17
450 451 4.323333 CCCATTTCTGTGTCAGACTGAGAT 60.323 45.833 5.10 0.00 40.46 2.75
459 460 7.115991 CTGTGTCAGACTGAGATTGACTCATC 61.116 46.154 18.25 10.07 43.00 2.92
470 471 7.065216 GAGATTGACTCATCGAAAACAATCA 57.935 36.000 22.68 9.00 43.02 2.57
482 483 5.746245 TCGAAAACAATCAATTTGAGCGTTT 59.254 32.000 17.03 17.03 36.71 3.60
495 496 0.674895 AGCGTTTCTAGCAAGCCAGG 60.675 55.000 0.00 0.00 37.01 4.45
496 497 0.955919 GCGTTTCTAGCAAGCCAGGT 60.956 55.000 0.00 0.00 34.19 4.00
500 501 3.616560 CGTTTCTAGCAAGCCAGGTTCTA 60.617 47.826 0.00 0.00 0.00 2.10
507 508 2.680339 GCAAGCCAGGTTCTAGATTGAC 59.320 50.000 0.00 0.00 0.00 3.18
513 2609 6.174049 AGCCAGGTTCTAGATTGACTTAAAC 58.826 40.000 0.00 0.00 0.00 2.01
522 2618 6.926826 TCTAGATTGACTTAAACTTCGTGCAA 59.073 34.615 0.00 0.00 0.00 4.08
540 2636 3.695606 GTGCGAGCCAGACCTCCA 61.696 66.667 0.00 0.00 0.00 3.86
545 2645 1.530771 GAGCCAGACCTCCATGCAT 59.469 57.895 0.00 0.00 0.00 3.96
546 2646 0.818445 GAGCCAGACCTCCATGCATG 60.818 60.000 20.19 20.19 0.00 4.06
547 2647 2.487532 GCCAGACCTCCATGCATGC 61.488 63.158 21.69 11.82 0.00 4.06
548 2648 1.077285 CCAGACCTCCATGCATGCA 60.077 57.895 25.04 25.04 0.00 3.96
549 2649 0.681887 CCAGACCTCCATGCATGCAA 60.682 55.000 26.68 7.52 0.00 4.08
550 2650 0.454600 CAGACCTCCATGCATGCAAC 59.545 55.000 26.68 9.97 0.00 4.17
551 2651 0.330604 AGACCTCCATGCATGCAACT 59.669 50.000 26.68 6.15 0.00 3.16
552 2652 1.561076 AGACCTCCATGCATGCAACTA 59.439 47.619 26.68 11.60 0.00 2.24
553 2653 2.025981 AGACCTCCATGCATGCAACTAA 60.026 45.455 26.68 9.73 0.00 2.24
554 2654 2.954318 GACCTCCATGCATGCAACTAAT 59.046 45.455 26.68 4.34 0.00 1.73
555 2655 2.954318 ACCTCCATGCATGCAACTAATC 59.046 45.455 26.68 0.00 0.00 1.75
556 2656 2.953648 CCTCCATGCATGCAACTAATCA 59.046 45.455 26.68 0.00 0.00 2.57
557 2657 3.572682 CCTCCATGCATGCAACTAATCAT 59.427 43.478 26.68 1.67 0.00 2.45
558 2658 4.546570 CTCCATGCATGCAACTAATCATG 58.453 43.478 26.68 15.29 42.08 3.07
559 2659 3.649073 CCATGCATGCAACTAATCATGG 58.351 45.455 26.68 20.47 43.09 3.66
638 2749 5.126067 ACCAGTAGTATCAATCATTGTGCC 58.874 41.667 0.00 0.00 0.00 5.01
699 2810 6.925165 CAGTTGTTTATTCATTTTGAGCCACT 59.075 34.615 0.00 0.00 0.00 4.00
741 2852 4.022589 TGGAGACAAGTCGAACGTCTAATT 60.023 41.667 11.41 0.00 40.04 1.40
748 2859 5.204673 AGTCGAACGTCTAATTCAAATGC 57.795 39.130 0.00 0.00 0.00 3.56
810 2982 1.532868 CAAAGAACTCGCTTGGGTCAG 59.467 52.381 0.00 0.00 0.00 3.51
841 3013 3.662078 TCCTGAGATCCATGAGACCATT 58.338 45.455 0.00 0.00 0.00 3.16
848 3020 5.824421 AGATCCATGAGACCATTTCAAACT 58.176 37.500 0.00 0.00 0.00 2.66
855 3027 4.145052 GAGACCATTTCAAACTTCCTGGT 58.855 43.478 0.00 0.00 39.61 4.00
862 3034 0.889186 CAAACTTCCTGGTCCCACGG 60.889 60.000 0.00 0.00 0.00 4.94
893 3065 5.153950 ACTTGTCCACTTGGTCTCTAATC 57.846 43.478 0.00 0.00 36.34 1.75
926 3098 4.695455 CGACAATATTCCACTTGTGGTCTT 59.305 41.667 18.05 8.02 35.80 3.01
927 3099 5.163854 CGACAATATTCCACTTGTGGTCTTC 60.164 44.000 18.05 6.86 35.80 2.87
958 3130 1.957177 TCGATGAGCTACACATCTCCC 59.043 52.381 11.01 0.00 41.06 4.30
971 3143 1.891150 CATCTCCCTTGCACAAGCTTT 59.109 47.619 0.00 0.00 42.74 3.51
1032 3204 0.395448 GGCGTCCTAGTCCTACCACT 60.395 60.000 0.00 0.00 0.00 4.00
1182 3364 2.126850 TCAACGCTCGAGCTGACG 60.127 61.111 32.88 20.52 39.32 4.35
1267 3449 1.077140 TTGTGGAGCAACAGCACCA 60.077 52.632 2.48 2.48 44.97 4.17
1297 3479 0.320374 TAGCTTCACCACCACCTTCG 59.680 55.000 0.00 0.00 0.00 3.79
1667 3886 1.025812 GACCTCCTCATCGACGATGT 58.974 55.000 31.06 15.41 40.55 3.06
1678 3904 1.135489 TCGACGATGTCTTGTACCAGC 60.135 52.381 0.00 0.00 0.00 4.85
1682 3908 2.497675 ACGATGTCTTGTACCAGCTCAT 59.502 45.455 0.00 0.00 0.00 2.90
1797 4023 3.072915 TGTCATGGTCATTCAGTTCCACT 59.927 43.478 0.00 0.00 32.60 4.00
1798 4024 4.074970 GTCATGGTCATTCAGTTCCACTT 58.925 43.478 0.00 0.00 32.60 3.16
1799 4025 4.520492 GTCATGGTCATTCAGTTCCACTTT 59.480 41.667 0.00 0.00 32.60 2.66
1800 4026 4.520111 TCATGGTCATTCAGTTCCACTTTG 59.480 41.667 0.00 0.00 32.60 2.77
1801 4027 2.622942 TGGTCATTCAGTTCCACTTTGC 59.377 45.455 0.00 0.00 0.00 3.68
1802 4028 2.622942 GGTCATTCAGTTCCACTTTGCA 59.377 45.455 0.00 0.00 0.00 4.08
1865 4112 4.518970 TCTTCCGATTCCAAGTTTTCCAAG 59.481 41.667 0.00 0.00 0.00 3.61
1878 4128 1.042003 TTCCAAGCACCAGCAGCAAA 61.042 50.000 0.00 0.00 45.49 3.68
1966 4216 3.716195 CGGTGGTGCTGGGATGGA 61.716 66.667 0.00 0.00 0.00 3.41
2162 4439 0.616891 GTTTACCGGGGTCACCTCAT 59.383 55.000 6.32 0.00 36.97 2.90
2248 4525 2.202362 CAGAGTCGTCGTCGCAGG 60.202 66.667 0.00 0.00 36.96 4.85
2607 4884 3.514362 CCATGGCGCCGGGTTAAC 61.514 66.667 24.70 0.00 0.00 2.01
2755 5032 4.907034 CGGCCGGTGATCGAGACG 62.907 72.222 20.10 0.00 42.43 4.18
3089 5370 0.959553 TGTTCGCTCTTCTTCGGTCT 59.040 50.000 0.00 0.00 0.00 3.85
3190 5479 5.125100 TCATCCAGATTTGTTGTTCTTGC 57.875 39.130 0.00 0.00 0.00 4.01
3226 5515 6.319405 TGTTAAGAGTACGTCCAGTATGCATA 59.681 38.462 1.16 1.16 37.69 3.14
3227 5516 7.013942 TGTTAAGAGTACGTCCAGTATGCATAT 59.986 37.037 10.16 0.00 37.69 1.78
3228 5517 5.630661 AGAGTACGTCCAGTATGCATATC 57.369 43.478 10.16 4.07 37.69 1.63
3229 5518 5.317808 AGAGTACGTCCAGTATGCATATCT 58.682 41.667 10.16 6.36 37.69 1.98
3230 5519 5.182190 AGAGTACGTCCAGTATGCATATCTG 59.818 44.000 20.47 20.47 37.69 2.90
3231 5520 3.667497 ACGTCCAGTATGCATATCTGG 57.333 47.619 30.18 30.18 46.94 3.86
3232 5521 2.300152 ACGTCCAGTATGCATATCTGGG 59.700 50.000 32.42 25.49 45.97 4.45
3233 5522 2.704572 GTCCAGTATGCATATCTGGGC 58.295 52.381 32.42 30.48 45.97 5.36
3234 5523 2.304180 GTCCAGTATGCATATCTGGGCT 59.696 50.000 31.45 15.64 46.55 5.19
3235 5524 2.981784 TCCAGTATGCATATCTGGGCTT 59.018 45.455 32.42 5.26 45.97 4.35
3236 5525 4.020218 GTCCAGTATGCATATCTGGGCTTA 60.020 45.833 31.45 20.69 46.55 3.09
3237 5526 4.020218 TCCAGTATGCATATCTGGGCTTAC 60.020 45.833 32.42 14.74 45.97 2.34
3238 5527 4.256920 CAGTATGCATATCTGGGCTTACC 58.743 47.826 20.01 2.66 39.89 2.85
3239 5528 2.479566 ATGCATATCTGGGCTTACCG 57.520 50.000 0.00 0.00 44.64 4.02
3240 5529 1.419381 TGCATATCTGGGCTTACCGA 58.581 50.000 0.00 0.00 44.64 4.69
3241 5530 1.977854 TGCATATCTGGGCTTACCGAT 59.022 47.619 0.00 0.00 44.64 4.18
3242 5531 2.371841 TGCATATCTGGGCTTACCGATT 59.628 45.455 0.00 0.00 44.64 3.34
3243 5532 3.003480 GCATATCTGGGCTTACCGATTC 58.997 50.000 0.00 0.00 44.64 2.52
3244 5533 3.557054 GCATATCTGGGCTTACCGATTCA 60.557 47.826 0.00 0.00 44.64 2.57
3245 5534 2.622064 ATCTGGGCTTACCGATTCAC 57.378 50.000 0.00 0.00 44.64 3.18
3246 5535 0.539986 TCTGGGCTTACCGATTCACC 59.460 55.000 0.00 0.00 44.64 4.02
3247 5536 0.251916 CTGGGCTTACCGATTCACCA 59.748 55.000 0.00 0.00 44.64 4.17
3248 5537 0.916086 TGGGCTTACCGATTCACCAT 59.084 50.000 0.00 0.00 44.64 3.55
3249 5538 1.134220 TGGGCTTACCGATTCACCATC 60.134 52.381 0.00 0.00 44.64 3.51
3259 5548 3.136808 GATTCACCATCGCAAGGTTTC 57.863 47.619 0.00 0.00 37.23 2.78
3260 5549 1.243902 TTCACCATCGCAAGGTTTCC 58.756 50.000 0.00 0.00 37.23 3.13
3261 5550 0.109532 TCACCATCGCAAGGTTTCCA 59.890 50.000 0.00 0.00 37.23 3.53
3262 5551 0.958091 CACCATCGCAAGGTTTCCAA 59.042 50.000 0.00 0.00 37.23 3.53
3263 5552 0.958822 ACCATCGCAAGGTTTCCAAC 59.041 50.000 0.00 0.00 35.33 3.77
3264 5553 0.958091 CCATCGCAAGGTTTCCAACA 59.042 50.000 0.00 0.00 38.47 3.33
3265 5554 1.339610 CCATCGCAAGGTTTCCAACAA 59.660 47.619 0.00 0.00 38.47 2.83
3266 5555 2.393764 CATCGCAAGGTTTCCAACAAC 58.606 47.619 0.00 0.00 38.47 3.32
3267 5556 0.378962 TCGCAAGGTTTCCAACAACG 59.621 50.000 0.00 0.00 38.47 4.10
3268 5557 0.378962 CGCAAGGTTTCCAACAACGA 59.621 50.000 0.00 0.00 0.00 3.85
3269 5558 1.202200 CGCAAGGTTTCCAACAACGAA 60.202 47.619 0.00 0.00 0.00 3.85
3270 5559 2.542824 CGCAAGGTTTCCAACAACGAAT 60.543 45.455 0.00 0.00 0.00 3.34
3271 5560 2.794350 GCAAGGTTTCCAACAACGAATG 59.206 45.455 0.00 0.00 0.00 2.67
3272 5561 3.736740 GCAAGGTTTCCAACAACGAATGT 60.737 43.478 0.00 0.00 46.82 2.71
3273 5562 4.498345 GCAAGGTTTCCAACAACGAATGTA 60.498 41.667 0.00 0.00 42.99 2.29
3274 5563 5.583495 CAAGGTTTCCAACAACGAATGTAA 58.417 37.500 0.00 0.00 42.99 2.41
3275 5564 5.432885 AGGTTTCCAACAACGAATGTAAG 57.567 39.130 0.00 0.00 42.99 2.34
3276 5565 4.885325 AGGTTTCCAACAACGAATGTAAGT 59.115 37.500 0.00 0.00 42.99 2.24
3277 5566 4.973663 GGTTTCCAACAACGAATGTAAGTG 59.026 41.667 0.00 0.00 42.99 3.16
3278 5567 5.449451 GGTTTCCAACAACGAATGTAAGTGT 60.449 40.000 0.00 0.00 42.99 3.55
3279 5568 6.238429 GGTTTCCAACAACGAATGTAAGTGTA 60.238 38.462 0.00 0.00 42.99 2.90
3280 5569 5.910637 TCCAACAACGAATGTAAGTGTAC 57.089 39.130 0.00 0.00 42.99 2.90
3281 5570 5.603596 TCCAACAACGAATGTAAGTGTACT 58.396 37.500 0.00 0.00 42.99 2.73
3282 5571 5.464057 TCCAACAACGAATGTAAGTGTACTG 59.536 40.000 0.00 0.00 42.99 2.74
3283 5572 5.464057 CCAACAACGAATGTAAGTGTACTGA 59.536 40.000 0.00 0.00 42.99 3.41
3284 5573 6.346598 CCAACAACGAATGTAAGTGTACTGAG 60.347 42.308 0.00 0.00 42.99 3.35
3285 5574 5.227908 ACAACGAATGTAAGTGTACTGAGG 58.772 41.667 0.00 0.00 41.63 3.86
3286 5575 5.010314 ACAACGAATGTAAGTGTACTGAGGA 59.990 40.000 0.00 0.00 41.63 3.71
3287 5576 5.916661 ACGAATGTAAGTGTACTGAGGAT 57.083 39.130 0.00 0.00 0.00 3.24
3288 5577 5.892568 ACGAATGTAAGTGTACTGAGGATC 58.107 41.667 0.00 0.00 0.00 3.36
3289 5578 4.970611 CGAATGTAAGTGTACTGAGGATCG 59.029 45.833 0.00 0.00 38.61 3.69
3290 5579 5.220796 CGAATGTAAGTGTACTGAGGATCGA 60.221 44.000 0.00 0.00 38.61 3.59
3291 5580 6.513556 CGAATGTAAGTGTACTGAGGATCGAT 60.514 42.308 0.00 0.00 38.61 3.59
3292 5581 6.716934 ATGTAAGTGTACTGAGGATCGATT 57.283 37.500 0.00 0.00 38.61 3.34
3293 5582 6.525578 TGTAAGTGTACTGAGGATCGATTT 57.474 37.500 0.00 0.00 38.61 2.17
3294 5583 6.330278 TGTAAGTGTACTGAGGATCGATTTG 58.670 40.000 0.00 0.00 38.61 2.32
3295 5584 5.661056 AAGTGTACTGAGGATCGATTTGA 57.339 39.130 0.00 0.00 38.61 2.69
3296 5585 5.661056 AGTGTACTGAGGATCGATTTGAA 57.339 39.130 0.00 0.00 38.61 2.69
3297 5586 6.037786 AGTGTACTGAGGATCGATTTGAAA 57.962 37.500 0.00 0.00 38.61 2.69
3298 5587 6.464222 AGTGTACTGAGGATCGATTTGAAAA 58.536 36.000 0.00 0.00 38.61 2.29
3299 5588 6.591834 AGTGTACTGAGGATCGATTTGAAAAG 59.408 38.462 0.00 0.00 38.61 2.27
3300 5589 6.590292 GTGTACTGAGGATCGATTTGAAAAGA 59.410 38.462 0.00 0.00 38.61 2.52
3301 5590 7.117812 GTGTACTGAGGATCGATTTGAAAAGAA 59.882 37.037 0.00 0.00 38.61 2.52
3302 5591 7.824289 TGTACTGAGGATCGATTTGAAAAGAAT 59.176 33.333 0.00 0.00 38.61 2.40
3303 5592 7.313951 ACTGAGGATCGATTTGAAAAGAATC 57.686 36.000 0.00 0.00 38.61 2.52
3304 5593 7.108847 ACTGAGGATCGATTTGAAAAGAATCT 58.891 34.615 0.00 0.00 38.61 2.40
3305 5594 7.609532 ACTGAGGATCGATTTGAAAAGAATCTT 59.390 33.333 0.00 0.00 38.61 2.40
3306 5595 9.102757 CTGAGGATCGATTTGAAAAGAATCTTA 57.897 33.333 0.00 0.00 38.61 2.10
3307 5596 9.102757 TGAGGATCGATTTGAAAAGAATCTTAG 57.897 33.333 0.00 0.00 38.61 2.18
3308 5597 9.103861 GAGGATCGATTTGAAAAGAATCTTAGT 57.896 33.333 0.00 0.00 32.60 2.24
3309 5598 9.454859 AGGATCGATTTGAAAAGAATCTTAGTT 57.545 29.630 0.00 0.00 32.60 2.24
3310 5599 9.495754 GGATCGATTTGAAAAGAATCTTAGTTG 57.504 33.333 0.00 0.00 32.60 3.16
3311 5600 8.902040 ATCGATTTGAAAAGAATCTTAGTTGC 57.098 30.769 0.00 0.00 32.60 4.17
3312 5601 8.099364 TCGATTTGAAAAGAATCTTAGTTGCT 57.901 30.769 0.00 0.00 32.60 3.91
3313 5602 8.017373 TCGATTTGAAAAGAATCTTAGTTGCTG 58.983 33.333 0.00 0.00 32.60 4.41
3314 5603 7.272084 CGATTTGAAAAGAATCTTAGTTGCTGG 59.728 37.037 0.00 0.00 32.60 4.85
3315 5604 7.581213 TTTGAAAAGAATCTTAGTTGCTGGA 57.419 32.000 0.00 0.00 0.00 3.86
3316 5605 7.581213 TTGAAAAGAATCTTAGTTGCTGGAA 57.419 32.000 0.00 0.00 0.00 3.53
3317 5606 7.206981 TGAAAAGAATCTTAGTTGCTGGAAG 57.793 36.000 0.00 0.00 0.00 3.46
3318 5607 6.207417 TGAAAAGAATCTTAGTTGCTGGAAGG 59.793 38.462 0.00 0.00 0.00 3.46
3319 5608 4.227864 AGAATCTTAGTTGCTGGAAGGG 57.772 45.455 0.00 0.00 0.00 3.95
3320 5609 3.589288 AGAATCTTAGTTGCTGGAAGGGT 59.411 43.478 0.00 0.00 0.00 4.34
3321 5610 4.783227 AGAATCTTAGTTGCTGGAAGGGTA 59.217 41.667 0.00 0.00 0.00 3.69
3322 5611 5.250774 AGAATCTTAGTTGCTGGAAGGGTAA 59.749 40.000 0.00 0.00 0.00 2.85
3323 5612 4.986054 TCTTAGTTGCTGGAAGGGTAAA 57.014 40.909 0.00 0.00 0.00 2.01
3324 5613 4.648651 TCTTAGTTGCTGGAAGGGTAAAC 58.351 43.478 0.00 0.00 0.00 2.01
3325 5614 4.349930 TCTTAGTTGCTGGAAGGGTAAACT 59.650 41.667 0.00 0.00 0.00 2.66
3326 5615 5.544948 TCTTAGTTGCTGGAAGGGTAAACTA 59.455 40.000 0.00 0.00 0.00 2.24
3327 5616 4.717279 AGTTGCTGGAAGGGTAAACTAA 57.283 40.909 0.00 0.00 0.00 2.24
3328 5617 5.256806 AGTTGCTGGAAGGGTAAACTAAT 57.743 39.130 0.00 0.00 0.00 1.73
3329 5618 5.010282 AGTTGCTGGAAGGGTAAACTAATG 58.990 41.667 0.00 0.00 0.00 1.90
3330 5619 4.650972 TGCTGGAAGGGTAAACTAATGT 57.349 40.909 0.00 0.00 0.00 2.71
3331 5620 4.585879 TGCTGGAAGGGTAAACTAATGTC 58.414 43.478 0.00 0.00 0.00 3.06
3332 5621 4.042311 TGCTGGAAGGGTAAACTAATGTCA 59.958 41.667 0.00 0.00 0.00 3.58
3333 5622 5.193679 GCTGGAAGGGTAAACTAATGTCAT 58.806 41.667 0.00 0.00 0.00 3.06
3334 5623 6.069905 TGCTGGAAGGGTAAACTAATGTCATA 60.070 38.462 0.00 0.00 0.00 2.15
3335 5624 6.998673 GCTGGAAGGGTAAACTAATGTCATAT 59.001 38.462 0.00 0.00 0.00 1.78
3336 5625 7.041098 GCTGGAAGGGTAAACTAATGTCATATG 60.041 40.741 0.00 0.00 0.00 1.78
3337 5626 7.287061 TGGAAGGGTAAACTAATGTCATATGG 58.713 38.462 2.13 0.00 0.00 2.74
3338 5627 7.128109 TGGAAGGGTAAACTAATGTCATATGGA 59.872 37.037 2.13 0.00 0.00 3.41
3339 5628 7.661847 GGAAGGGTAAACTAATGTCATATGGAG 59.338 40.741 2.13 0.00 0.00 3.86
3340 5629 7.079451 AGGGTAAACTAATGTCATATGGAGG 57.921 40.000 2.13 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.748132 AGCAATCATTTAAATAATGTCCCCG 58.252 36.000 0.00 0.00 0.00 5.73
98 99 3.211045 TGGTGTCTTCCTTTACTTGCAC 58.789 45.455 0.00 0.00 0.00 4.57
158 159 6.839124 ACATTGCAACAAGGAGAATCATAA 57.161 33.333 0.00 0.00 36.25 1.90
161 162 5.769662 AGTTACATTGCAACAAGGAGAATCA 59.230 36.000 0.00 0.00 36.25 2.57
217 218 1.903877 ATTGTGTCCCCTCCTCGCAG 61.904 60.000 0.00 0.00 0.00 5.18
323 324 1.474077 GATTTCTGACATGGGTGTGCC 59.526 52.381 0.00 0.00 39.09 5.01
374 375 1.402896 GGCGGAGATGATGGGAGACA 61.403 60.000 0.00 0.00 0.00 3.41
421 422 1.586154 GACACAGAAATGGGGCACGG 61.586 60.000 0.00 0.00 0.00 4.94
434 435 4.022503 TGAGTCAATCTCAGTCTGACACAG 60.023 45.833 10.88 5.21 46.77 3.66
450 451 8.134261 TCAAATTGATTGTTTTCGATGAGTCAA 58.866 29.630 0.00 0.00 40.11 3.18
459 460 5.559694 AACGCTCAAATTGATTGTTTTCG 57.440 34.783 0.00 0.00 40.11 3.46
466 467 5.627499 TGCTAGAAACGCTCAAATTGATT 57.373 34.783 0.00 0.00 0.00 2.57
468 469 4.613622 GCTTGCTAGAAACGCTCAAATTGA 60.614 41.667 0.00 0.00 0.00 2.57
470 471 3.366374 GGCTTGCTAGAAACGCTCAAATT 60.366 43.478 0.00 0.00 0.00 1.82
482 483 3.101643 TCTAGAACCTGGCTTGCTAGA 57.898 47.619 7.56 9.82 36.23 2.43
495 496 7.095774 TGCACGAAGTTTAAGTCAATCTAGAAC 60.096 37.037 0.00 0.00 41.61 3.01
496 497 6.926826 TGCACGAAGTTTAAGTCAATCTAGAA 59.073 34.615 0.00 0.00 41.61 2.10
500 501 5.527582 ACTTGCACGAAGTTTAAGTCAATCT 59.472 36.000 0.00 0.00 42.70 2.40
507 508 2.033236 TCGCACTTGCACGAAGTTTAAG 60.033 45.455 0.00 0.00 42.70 1.85
513 2609 2.171940 GCTCGCACTTGCACGAAG 59.828 61.111 0.00 0.00 42.21 3.79
522 2618 3.386237 GGAGGTCTGGCTCGCACT 61.386 66.667 0.00 0.00 0.00 4.40
540 2636 3.491964 GCACCATGATTAGTTGCATGCAT 60.492 43.478 23.37 10.46 40.33 3.96
545 2645 3.156293 AGTTGCACCATGATTAGTTGCA 58.844 40.909 0.00 0.00 0.00 4.08
546 2646 3.855689 AGTTGCACCATGATTAGTTGC 57.144 42.857 0.00 0.00 0.00 4.17
547 2647 7.087409 TGATTAGTTGCACCATGATTAGTTG 57.913 36.000 0.00 0.00 0.00 3.16
548 2648 7.201848 CCATGATTAGTTGCACCATGATTAGTT 60.202 37.037 0.00 0.00 37.41 2.24
549 2649 6.263842 CCATGATTAGTTGCACCATGATTAGT 59.736 38.462 0.00 0.00 37.41 2.24
550 2650 6.263842 ACCATGATTAGTTGCACCATGATTAG 59.736 38.462 0.00 0.00 37.41 1.73
551 2651 6.128486 ACCATGATTAGTTGCACCATGATTA 58.872 36.000 0.00 0.00 37.41 1.75
552 2652 4.957954 ACCATGATTAGTTGCACCATGATT 59.042 37.500 0.00 0.00 37.41 2.57
553 2653 4.539726 ACCATGATTAGTTGCACCATGAT 58.460 39.130 0.00 0.00 37.41 2.45
554 2654 3.966979 ACCATGATTAGTTGCACCATGA 58.033 40.909 0.00 0.00 37.41 3.07
555 2655 4.724074 AACCATGATTAGTTGCACCATG 57.276 40.909 0.00 0.00 35.61 3.66
556 2656 5.481473 AGAAAACCATGATTAGTTGCACCAT 59.519 36.000 0.00 0.00 0.00 3.55
557 2657 4.832266 AGAAAACCATGATTAGTTGCACCA 59.168 37.500 0.00 0.00 0.00 4.17
558 2658 5.391312 AGAAAACCATGATTAGTTGCACC 57.609 39.130 0.00 0.00 0.00 5.01
559 2659 6.215845 ACAAGAAAACCATGATTAGTTGCAC 58.784 36.000 0.00 0.00 0.00 4.57
638 2749 1.067354 GGGCAGCAACTTGAAAGGATG 60.067 52.381 0.00 0.00 0.00 3.51
699 2810 5.046663 TCTCCATCATGTAGCAACACAAGTA 60.047 40.000 0.00 0.00 38.78 2.24
731 2842 5.643777 AGCTAGTGCATTTGAATTAGACGTT 59.356 36.000 0.00 0.00 42.74 3.99
734 2845 8.748380 AAAAAGCTAGTGCATTTGAATTAGAC 57.252 30.769 0.00 0.00 38.87 2.59
763 2874 3.784701 TTTTGTTTTTGCGCTGGACTA 57.215 38.095 9.73 0.00 0.00 2.59
764 2875 2.663826 TTTTGTTTTTGCGCTGGACT 57.336 40.000 9.73 0.00 0.00 3.85
810 2982 4.356979 TCTCAGGATGGGACGACC 57.643 61.111 0.00 0.00 36.46 4.79
819 2991 3.341318 TGGTCTCATGGATCTCAGGAT 57.659 47.619 0.00 0.00 35.49 3.24
841 3013 1.476110 CGTGGGACCAGGAAGTTTGAA 60.476 52.381 5.12 0.00 34.13 2.69
855 3027 3.948719 GTTGAGTGGCCCGTGGGA 61.949 66.667 9.72 0.00 37.50 4.37
862 3034 0.179018 AGTGGACAAGTTGAGTGGCC 60.179 55.000 10.54 0.00 45.34 5.36
926 3098 4.991153 AGCTCATCGACATTTCTAGTGA 57.009 40.909 0.00 0.00 0.00 3.41
927 3099 5.457148 GTGTAGCTCATCGACATTTCTAGTG 59.543 44.000 0.00 0.00 32.98 2.74
958 3130 1.613836 AGGAGGAAAGCTTGTGCAAG 58.386 50.000 0.00 7.51 42.74 4.01
971 3143 1.144913 CTTGGTGTTTGGGAAGGAGGA 59.855 52.381 0.00 0.00 0.00 3.71
1032 3204 2.609747 AGCAACACCAGGAAGACTAGA 58.390 47.619 0.00 0.00 0.00 2.43
1182 3364 3.123050 ACCCGTACTACGTGTGTTTTTC 58.877 45.455 7.79 0.00 40.58 2.29
1261 3443 2.025767 CTAGCCATCTCGCTGGTGCT 62.026 60.000 0.00 0.00 40.08 4.40
1262 3444 1.593750 CTAGCCATCTCGCTGGTGC 60.594 63.158 0.00 0.00 40.08 5.01
1267 3449 0.103937 GTGAAGCTAGCCATCTCGCT 59.896 55.000 12.13 0.00 42.37 4.93
1297 3479 0.035439 TCCGGAGTGATTTGGAAGGC 60.035 55.000 0.00 0.00 0.00 4.35
1560 3764 3.569049 CTTGCCCGGTCTCGTCGTT 62.569 63.158 0.00 0.00 33.95 3.85
1667 3886 2.813754 GTTGCAATGAGCTGGTACAAGA 59.186 45.455 0.59 0.00 45.94 3.02
1678 3904 1.325640 CAGATCGACGGTTGCAATGAG 59.674 52.381 0.59 0.00 0.00 2.90
1682 3908 0.601057 TCTCAGATCGACGGTTGCAA 59.399 50.000 0.00 0.00 0.00 4.08
1762 3988 2.305635 ACCATGACAGTATCTGGTGCAA 59.694 45.455 0.00 0.00 37.42 4.08
1797 4023 4.341806 TCCTTCTTTGATTCAAGCTGCAAA 59.658 37.500 1.02 0.00 0.00 3.68
1798 4024 3.890756 TCCTTCTTTGATTCAAGCTGCAA 59.109 39.130 1.02 0.00 0.00 4.08
1799 4025 3.489355 TCCTTCTTTGATTCAAGCTGCA 58.511 40.909 1.02 0.00 0.00 4.41
1800 4026 4.483311 CTTCCTTCTTTGATTCAAGCTGC 58.517 43.478 0.00 0.00 0.00 5.25
1801 4027 4.022589 TGCTTCCTTCTTTGATTCAAGCTG 60.023 41.667 0.00 0.00 36.54 4.24
1802 4028 4.147321 TGCTTCCTTCTTTGATTCAAGCT 58.853 39.130 0.00 0.00 36.54 3.74
1865 4112 1.143620 TGGTTTTTGCTGCTGGTGC 59.856 52.632 0.00 0.00 40.20 5.01
1878 4128 2.824341 TGGTACCAACGTTTTGTGGTTT 59.176 40.909 13.60 0.00 34.90 3.27
2162 4439 2.566529 CGCCTGCGAGTGTGAGTA 59.433 61.111 5.43 0.00 42.83 2.59
2248 4525 1.331399 CCTCGAACTCCTTCCTCCCC 61.331 65.000 0.00 0.00 0.00 4.81
2338 4615 0.417841 AGACAAGGAGGAGCCCCTTA 59.582 55.000 8.39 0.00 44.53 2.69
2383 4660 1.219393 GCTGTAGAGGTGCCTGTCC 59.781 63.158 0.00 0.00 0.00 4.02
2536 4813 0.757561 TGGTGTTGAGGGACGAGTCA 60.758 55.000 5.55 0.00 0.00 3.41
2680 4957 0.320334 TGTACACGTCGGACTCGGTA 60.320 55.000 6.57 3.34 36.95 4.02
2755 5032 2.579738 GTGAAGGACCTCTCCGCC 59.420 66.667 0.00 0.00 42.22 6.13
3207 5496 5.394802 CAGATATGCATACTGGACGTACTC 58.605 45.833 20.01 7.96 0.00 2.59
3208 5497 5.378292 CAGATATGCATACTGGACGTACT 57.622 43.478 20.01 0.05 0.00 2.73
3226 5515 1.141053 GGTGAATCGGTAAGCCCAGAT 59.859 52.381 0.00 0.00 0.00 2.90
3227 5516 0.539986 GGTGAATCGGTAAGCCCAGA 59.460 55.000 0.00 0.00 0.00 3.86
3228 5517 0.251916 TGGTGAATCGGTAAGCCCAG 59.748 55.000 0.00 0.00 0.00 4.45
3229 5518 0.916086 ATGGTGAATCGGTAAGCCCA 59.084 50.000 0.00 0.00 0.00 5.36
3230 5519 1.594331 GATGGTGAATCGGTAAGCCC 58.406 55.000 0.00 0.00 0.00 5.19
3239 5528 2.159379 GGAAACCTTGCGATGGTGAATC 60.159 50.000 0.00 0.00 37.93 2.52
3240 5529 1.818674 GGAAACCTTGCGATGGTGAAT 59.181 47.619 0.00 0.00 37.93 2.57
3241 5530 1.243902 GGAAACCTTGCGATGGTGAA 58.756 50.000 0.00 0.00 37.93 3.18
3242 5531 0.109532 TGGAAACCTTGCGATGGTGA 59.890 50.000 0.00 0.00 37.93 4.02
3243 5532 0.958091 TTGGAAACCTTGCGATGGTG 59.042 50.000 0.00 0.00 37.93 4.17
3244 5533 0.958822 GTTGGAAACCTTGCGATGGT 59.041 50.000 0.00 0.00 42.21 3.55
3245 5534 3.792716 GTTGGAAACCTTGCGATGG 57.207 52.632 0.00 0.00 42.21 3.51
3256 5545 5.821516 ACACTTACATTCGTTGTTGGAAA 57.178 34.783 0.00 0.00 39.87 3.13
3257 5546 6.018588 CAGTACACTTACATTCGTTGTTGGAA 60.019 38.462 0.00 0.00 39.87 3.53
3258 5547 5.464057 CAGTACACTTACATTCGTTGTTGGA 59.536 40.000 0.00 0.00 39.87 3.53
3259 5548 5.464057 TCAGTACACTTACATTCGTTGTTGG 59.536 40.000 0.00 0.00 39.87 3.77
3260 5549 6.346598 CCTCAGTACACTTACATTCGTTGTTG 60.347 42.308 0.00 0.00 39.87 3.33
3261 5550 5.694910 CCTCAGTACACTTACATTCGTTGTT 59.305 40.000 0.00 0.00 39.87 2.83
3262 5551 5.010314 TCCTCAGTACACTTACATTCGTTGT 59.990 40.000 0.00 0.00 42.62 3.32
3263 5552 5.466819 TCCTCAGTACACTTACATTCGTTG 58.533 41.667 0.00 0.00 0.00 4.10
3264 5553 5.717078 TCCTCAGTACACTTACATTCGTT 57.283 39.130 0.00 0.00 0.00 3.85
3265 5554 5.448768 CGATCCTCAGTACACTTACATTCGT 60.449 44.000 0.00 0.00 0.00 3.85
3266 5555 4.970611 CGATCCTCAGTACACTTACATTCG 59.029 45.833 0.00 0.00 0.00 3.34
3267 5556 6.132791 TCGATCCTCAGTACACTTACATTC 57.867 41.667 0.00 0.00 0.00 2.67
3268 5557 6.716934 ATCGATCCTCAGTACACTTACATT 57.283 37.500 0.00 0.00 0.00 2.71
3269 5558 6.716934 AATCGATCCTCAGTACACTTACAT 57.283 37.500 0.00 0.00 0.00 2.29
3270 5559 6.152154 TCAAATCGATCCTCAGTACACTTACA 59.848 38.462 0.00 0.00 0.00 2.41
3271 5560 6.561614 TCAAATCGATCCTCAGTACACTTAC 58.438 40.000 0.00 0.00 0.00 2.34
3272 5561 6.769134 TCAAATCGATCCTCAGTACACTTA 57.231 37.500 0.00 0.00 0.00 2.24
3273 5562 5.661056 TCAAATCGATCCTCAGTACACTT 57.339 39.130 0.00 0.00 0.00 3.16
3274 5563 5.661056 TTCAAATCGATCCTCAGTACACT 57.339 39.130 0.00 0.00 0.00 3.55
3275 5564 6.590292 TCTTTTCAAATCGATCCTCAGTACAC 59.410 38.462 0.00 0.00 0.00 2.90
3276 5565 6.697395 TCTTTTCAAATCGATCCTCAGTACA 58.303 36.000 0.00 0.00 0.00 2.90
3277 5566 7.596749 TTCTTTTCAAATCGATCCTCAGTAC 57.403 36.000 0.00 0.00 0.00 2.73
3278 5567 8.260818 AGATTCTTTTCAAATCGATCCTCAGTA 58.739 33.333 0.00 0.00 38.02 2.74
3279 5568 7.108847 AGATTCTTTTCAAATCGATCCTCAGT 58.891 34.615 0.00 0.00 38.02 3.41
3280 5569 7.551035 AGATTCTTTTCAAATCGATCCTCAG 57.449 36.000 0.00 0.00 38.02 3.35
3281 5570 7.928307 AAGATTCTTTTCAAATCGATCCTCA 57.072 32.000 0.00 0.00 38.02 3.86
3282 5571 9.103861 ACTAAGATTCTTTTCAAATCGATCCTC 57.896 33.333 3.86 0.00 38.02 3.71
3283 5572 9.454859 AACTAAGATTCTTTTCAAATCGATCCT 57.545 29.630 3.86 0.00 38.02 3.24
3284 5573 9.495754 CAACTAAGATTCTTTTCAAATCGATCC 57.504 33.333 3.86 0.00 38.02 3.36
3285 5574 9.004146 GCAACTAAGATTCTTTTCAAATCGATC 57.996 33.333 3.86 0.00 38.02 3.69
3286 5575 8.734386 AGCAACTAAGATTCTTTTCAAATCGAT 58.266 29.630 3.86 0.00 38.02 3.59
3287 5576 8.017373 CAGCAACTAAGATTCTTTTCAAATCGA 58.983 33.333 3.86 0.00 38.02 3.59
3288 5577 7.272084 CCAGCAACTAAGATTCTTTTCAAATCG 59.728 37.037 3.86 0.00 38.02 3.34
3289 5578 8.299570 TCCAGCAACTAAGATTCTTTTCAAATC 58.700 33.333 3.86 0.00 34.08 2.17
3290 5579 8.181904 TCCAGCAACTAAGATTCTTTTCAAAT 57.818 30.769 3.86 0.00 0.00 2.32
3291 5580 7.581213 TCCAGCAACTAAGATTCTTTTCAAA 57.419 32.000 3.86 0.00 0.00 2.69
3292 5581 7.255590 CCTTCCAGCAACTAAGATTCTTTTCAA 60.256 37.037 3.86 0.00 0.00 2.69
3293 5582 6.207417 CCTTCCAGCAACTAAGATTCTTTTCA 59.793 38.462 3.86 0.00 0.00 2.69
3294 5583 6.349694 CCCTTCCAGCAACTAAGATTCTTTTC 60.350 42.308 3.86 0.00 0.00 2.29
3295 5584 5.478332 CCCTTCCAGCAACTAAGATTCTTTT 59.522 40.000 3.86 0.00 0.00 2.27
3296 5585 5.012893 CCCTTCCAGCAACTAAGATTCTTT 58.987 41.667 3.86 0.00 0.00 2.52
3297 5586 4.043435 ACCCTTCCAGCAACTAAGATTCTT 59.957 41.667 4.03 4.03 0.00 2.52
3298 5587 3.589288 ACCCTTCCAGCAACTAAGATTCT 59.411 43.478 0.00 0.00 0.00 2.40
3299 5588 3.956744 ACCCTTCCAGCAACTAAGATTC 58.043 45.455 0.00 0.00 0.00 2.52
3300 5589 5.514500 TTACCCTTCCAGCAACTAAGATT 57.486 39.130 0.00 0.00 0.00 2.40
3301 5590 5.014228 AGTTTACCCTTCCAGCAACTAAGAT 59.986 40.000 0.00 0.00 0.00 2.40
3302 5591 4.349930 AGTTTACCCTTCCAGCAACTAAGA 59.650 41.667 0.00 0.00 0.00 2.10
3303 5592 4.652822 AGTTTACCCTTCCAGCAACTAAG 58.347 43.478 0.00 0.00 0.00 2.18
3304 5593 4.717279 AGTTTACCCTTCCAGCAACTAA 57.283 40.909 0.00 0.00 0.00 2.24
3305 5594 5.829062 TTAGTTTACCCTTCCAGCAACTA 57.171 39.130 0.00 0.00 0.00 2.24
3306 5595 4.717279 TTAGTTTACCCTTCCAGCAACT 57.283 40.909 0.00 0.00 0.00 3.16
3307 5596 4.765339 ACATTAGTTTACCCTTCCAGCAAC 59.235 41.667 0.00 0.00 0.00 4.17
3308 5597 4.993028 ACATTAGTTTACCCTTCCAGCAA 58.007 39.130 0.00 0.00 0.00 3.91
3309 5598 4.042311 TGACATTAGTTTACCCTTCCAGCA 59.958 41.667 0.00 0.00 0.00 4.41
3310 5599 4.585879 TGACATTAGTTTACCCTTCCAGC 58.414 43.478 0.00 0.00 0.00 4.85
3311 5600 7.445402 CCATATGACATTAGTTTACCCTTCCAG 59.555 40.741 3.65 0.00 0.00 3.86
3312 5601 7.128109 TCCATATGACATTAGTTTACCCTTCCA 59.872 37.037 3.65 0.00 0.00 3.53
3313 5602 7.514721 TCCATATGACATTAGTTTACCCTTCC 58.485 38.462 3.65 0.00 0.00 3.46
3314 5603 7.661847 CCTCCATATGACATTAGTTTACCCTTC 59.338 40.741 3.65 0.00 0.00 3.46
3315 5604 7.518188 CCTCCATATGACATTAGTTTACCCTT 58.482 38.462 3.65 0.00 0.00 3.95
3316 5605 7.079451 CCTCCATATGACATTAGTTTACCCT 57.921 40.000 3.65 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.