Multiple sequence alignment - TraesCS7B01G415300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G415300 chr7B 100.000 4103 0 0 1 4103 683029516 683033618 0.000000e+00 7577.0
1 TraesCS7B01G415300 chr7B 80.038 2114 327 47 981 3047 683169264 683167199 0.000000e+00 1478.0
2 TraesCS7B01G415300 chr7B 78.835 2060 368 36 1023 3060 683419717 683417704 0.000000e+00 1327.0
3 TraesCS7B01G415300 chr7B 80.463 1167 202 21 1912 3060 683325153 683323995 0.000000e+00 869.0
4 TraesCS7B01G415300 chr7B 79.123 867 140 29 962 1816 683105713 683106550 9.960000e-156 560.0
5 TraesCS7B01G415300 chr7B 77.614 813 146 23 962 1765 682842158 682842943 1.040000e-125 460.0
6 TraesCS7B01G415300 chr7B 77.399 792 154 17 1035 1818 683231451 683230677 8.090000e-122 448.0
7 TraesCS7B01G415300 chr7B 76.663 827 154 29 1001 1818 683243783 683242987 4.900000e-114 422.0
8 TraesCS7B01G415300 chr7B 77.700 574 110 15 1240 1812 683100359 683100915 6.570000e-88 335.0
9 TraesCS7B01G415300 chr7B 75.214 702 122 30 987 1676 640347966 640348627 6.710000e-73 285.0
10 TraesCS7B01G415300 chr7B 74.550 389 90 4 1522 1910 683326250 683325871 1.180000e-35 161.0
11 TraesCS7B01G415300 chr7A 92.558 1075 49 6 792 1848 694116291 694117352 0.000000e+00 1513.0
12 TraesCS7B01G415300 chr7A 81.782 1257 203 15 1837 3071 694357322 694356070 0.000000e+00 1029.0
13 TraesCS7B01G415300 chr7A 94.030 402 23 1 1939 2340 694117351 694117751 3.510000e-170 608.0
14 TraesCS7B01G415300 chr7A 81.242 741 86 36 67 787 118183580 118184287 2.160000e-152 549.0
15 TraesCS7B01G415300 chr7A 78.382 865 144 31 962 1810 694196411 694197248 4.700000e-144 521.0
16 TraesCS7B01G415300 chr7A 78.327 849 149 24 981 1818 694331922 694331098 2.190000e-142 516.0
17 TraesCS7B01G415300 chr7A 78.195 853 130 32 998 1818 694254348 694253520 1.020000e-135 494.0
18 TraesCS7B01G415300 chr7A 77.680 793 150 18 1035 1818 694358160 694357386 3.740000e-125 459.0
19 TraesCS7B01G415300 chr7A 82.245 490 47 17 1 488 694106912 694107363 1.790000e-103 387.0
20 TraesCS7B01G415300 chr7A 93.450 229 11 4 527 754 694111925 694112150 1.830000e-88 337.0
21 TraesCS7B01G415300 chrUn 80.652 1933 322 30 1001 2916 92685762 92683865 0.000000e+00 1450.0
22 TraesCS7B01G415300 chrUn 80.652 1933 322 30 1001 2916 291005264 291003367 0.000000e+00 1450.0
23 TraesCS7B01G415300 chr7D 82.843 1393 190 23 1836 3192 602627364 602628743 0.000000e+00 1203.0
24 TraesCS7B01G415300 chr7D 81.652 1259 201 19 1837 3071 602722690 602721438 0.000000e+00 1018.0
25 TraesCS7B01G415300 chr7D 82.674 733 87 32 67 787 112834709 112835413 7.540000e-172 614.0
26 TraesCS7B01G415300 chr7D 78.303 825 147 22 1001 1818 602751494 602750695 1.700000e-138 503.0
27 TraesCS7B01G415300 chr7D 78.030 792 149 17 1035 1818 602723528 602722754 3.710000e-130 475.0
28 TraesCS7B01G415300 chr7D 78.008 773 150 15 1050 1818 602673509 602672753 6.210000e-128 468.0
29 TraesCS7B01G415300 chr7D 76.749 886 154 35 968 1818 602626427 602627295 8.090000e-122 448.0
30 TraesCS7B01G415300 chr7D 76.887 848 159 32 986 1818 602664464 602663639 2.910000e-121 446.0
31 TraesCS7B01G415300 chr5D 83.735 1119 158 13 1959 3065 107552903 107551797 0.000000e+00 1037.0
32 TraesCS7B01G415300 chr5A 83.467 1119 161 15 1959 3065 110353411 110352305 0.000000e+00 1020.0
33 TraesCS7B01G415300 chr5A 94.765 554 23 5 3553 4103 273445286 273445836 0.000000e+00 857.0
34 TraesCS7B01G415300 chr5A 93.671 553 31 4 3553 4103 301367808 301368358 0.000000e+00 824.0
35 TraesCS7B01G415300 chr2B 96.396 555 16 3 3553 4103 109767025 109767579 0.000000e+00 911.0
36 TraesCS7B01G415300 chr2B 94.194 465 23 4 3616 4077 109131881 109132344 0.000000e+00 706.0
37 TraesCS7B01G415300 chr2A 94.065 556 25 8 3553 4103 724037848 724037296 0.000000e+00 837.0
38 TraesCS7B01G415300 chr2A 88.462 52 5 1 449 499 709838699 709838648 1.230000e-05 62.1
39 TraesCS7B01G415300 chr5B 94.518 529 24 5 3553 4077 710204852 710204325 0.000000e+00 811.0
40 TraesCS7B01G415300 chr3A 92.642 530 32 7 3553 4077 601619726 601619199 0.000000e+00 756.0
41 TraesCS7B01G415300 chr3A 92.642 530 30 8 3553 4076 503840172 503839646 0.000000e+00 754.0
42 TraesCS7B01G415300 chr3B 91.577 558 21 6 3551 4103 567391046 567391582 0.000000e+00 747.0
43 TraesCS7B01G415300 chr4B 79.570 651 89 29 73 720 368109910 368110519 3.790000e-115 425.0
44 TraesCS7B01G415300 chr4B 85.171 263 35 3 528 788 368111156 368110896 2.430000e-67 267.0
45 TraesCS7B01G415300 chr2D 93.617 47 2 1 452 498 64068336 64068291 7.360000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G415300 chr7B 683029516 683033618 4102 False 7577.0 7577 100.0000 1 4103 1 chr7B.!!$F3 4102
1 TraesCS7B01G415300 chr7B 683167199 683169264 2065 True 1478.0 1478 80.0380 981 3047 1 chr7B.!!$R1 2066
2 TraesCS7B01G415300 chr7B 683417704 683419717 2013 True 1327.0 1327 78.8350 1023 3060 1 chr7B.!!$R4 2037
3 TraesCS7B01G415300 chr7B 683105713 683106550 837 False 560.0 560 79.1230 962 1816 1 chr7B.!!$F5 854
4 TraesCS7B01G415300 chr7B 683323995 683326250 2255 True 515.0 869 77.5065 1522 3060 2 chr7B.!!$R5 1538
5 TraesCS7B01G415300 chr7B 682842158 682842943 785 False 460.0 460 77.6140 962 1765 1 chr7B.!!$F2 803
6 TraesCS7B01G415300 chr7B 683230677 683231451 774 True 448.0 448 77.3990 1035 1818 1 chr7B.!!$R2 783
7 TraesCS7B01G415300 chr7B 683242987 683243783 796 True 422.0 422 76.6630 1001 1818 1 chr7B.!!$R3 817
8 TraesCS7B01G415300 chr7B 683100359 683100915 556 False 335.0 335 77.7000 1240 1812 1 chr7B.!!$F4 572
9 TraesCS7B01G415300 chr7B 640347966 640348627 661 False 285.0 285 75.2140 987 1676 1 chr7B.!!$F1 689
10 TraesCS7B01G415300 chr7A 694116291 694117751 1460 False 1060.5 1513 93.2940 792 2340 2 chr7A.!!$F5 1548
11 TraesCS7B01G415300 chr7A 694356070 694358160 2090 True 744.0 1029 79.7310 1035 3071 2 chr7A.!!$R3 2036
12 TraesCS7B01G415300 chr7A 118183580 118184287 707 False 549.0 549 81.2420 67 787 1 chr7A.!!$F1 720
13 TraesCS7B01G415300 chr7A 694196411 694197248 837 False 521.0 521 78.3820 962 1810 1 chr7A.!!$F4 848
14 TraesCS7B01G415300 chr7A 694331098 694331922 824 True 516.0 516 78.3270 981 1818 1 chr7A.!!$R2 837
15 TraesCS7B01G415300 chr7A 694253520 694254348 828 True 494.0 494 78.1950 998 1818 1 chr7A.!!$R1 820
16 TraesCS7B01G415300 chrUn 92683865 92685762 1897 True 1450.0 1450 80.6520 1001 2916 1 chrUn.!!$R1 1915
17 TraesCS7B01G415300 chrUn 291003367 291005264 1897 True 1450.0 1450 80.6520 1001 2916 1 chrUn.!!$R2 1915
18 TraesCS7B01G415300 chr7D 602626427 602628743 2316 False 825.5 1203 79.7960 968 3192 2 chr7D.!!$F2 2224
19 TraesCS7B01G415300 chr7D 602721438 602723528 2090 True 746.5 1018 79.8410 1035 3071 2 chr7D.!!$R4 2036
20 TraesCS7B01G415300 chr7D 112834709 112835413 704 False 614.0 614 82.6740 67 787 1 chr7D.!!$F1 720
21 TraesCS7B01G415300 chr7D 602750695 602751494 799 True 503.0 503 78.3030 1001 1818 1 chr7D.!!$R3 817
22 TraesCS7B01G415300 chr7D 602672753 602673509 756 True 468.0 468 78.0080 1050 1818 1 chr7D.!!$R2 768
23 TraesCS7B01G415300 chr7D 602663639 602664464 825 True 446.0 446 76.8870 986 1818 1 chr7D.!!$R1 832
24 TraesCS7B01G415300 chr5D 107551797 107552903 1106 True 1037.0 1037 83.7350 1959 3065 1 chr5D.!!$R1 1106
25 TraesCS7B01G415300 chr5A 110352305 110353411 1106 True 1020.0 1020 83.4670 1959 3065 1 chr5A.!!$R1 1106
26 TraesCS7B01G415300 chr5A 273445286 273445836 550 False 857.0 857 94.7650 3553 4103 1 chr5A.!!$F1 550
27 TraesCS7B01G415300 chr5A 301367808 301368358 550 False 824.0 824 93.6710 3553 4103 1 chr5A.!!$F2 550
28 TraesCS7B01G415300 chr2B 109767025 109767579 554 False 911.0 911 96.3960 3553 4103 1 chr2B.!!$F2 550
29 TraesCS7B01G415300 chr2A 724037296 724037848 552 True 837.0 837 94.0650 3553 4103 1 chr2A.!!$R2 550
30 TraesCS7B01G415300 chr5B 710204325 710204852 527 True 811.0 811 94.5180 3553 4077 1 chr5B.!!$R1 524
31 TraesCS7B01G415300 chr3A 601619199 601619726 527 True 756.0 756 92.6420 3553 4077 1 chr3A.!!$R2 524
32 TraesCS7B01G415300 chr3A 503839646 503840172 526 True 754.0 754 92.6420 3553 4076 1 chr3A.!!$R1 523
33 TraesCS7B01G415300 chr3B 567391046 567391582 536 False 747.0 747 91.5770 3551 4103 1 chr3B.!!$F1 552
34 TraesCS7B01G415300 chr4B 368109910 368110519 609 False 425.0 425 79.5700 73 720 1 chr4B.!!$F1 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 414 0.034337 TGTGTTAGGACCTTCACCGC 59.966 55.0 19.80 6.55 0.0 5.68 F
396 427 0.035598 TCACCGCGATTTCCCTCAAA 59.964 50.0 8.23 0.00 0.0 2.69 F
893 975 0.038526 CTGGTTTCTAGTCCGCGTGT 60.039 55.0 4.92 0.00 0.0 4.49 F
894 976 0.038892 TGGTTTCTAGTCCGCGTGTC 60.039 55.0 4.92 0.00 0.0 3.67 F
920 1002 0.320697 AAGTTGGACTCGGTGTAGGC 59.679 55.0 0.00 0.00 0.0 3.93 F
2326 3312 0.324830 GGAGGGCAGTCTAGACAGGT 60.325 60.0 24.44 1.16 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 1907 0.171903 CCGGCAAAATTCTGCTCAGG 59.828 55.0 3.33 1.72 42.25 3.86 R
2341 3327 1.180029 GGCCATGTCAAGCATCTGTT 58.820 50.0 0.00 0.00 35.19 3.16 R
2634 3623 0.174845 CCAGTAGGACGATGCCGAAA 59.825 55.0 0.00 0.00 39.50 3.46 R
2776 3765 0.311165 CACTCGTTGTCCTCGACACT 59.689 55.0 0.00 0.00 42.60 3.55 R
2916 3905 1.252904 ACCTGTACATGTACGGCGGT 61.253 55.0 31.35 28.47 40.27 5.68 R
3337 4347 0.032952 GCATACGTCCCATAAGCCGA 59.967 55.0 0.00 0.00 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.562583 TTATTGAAGGTAAATTAATGTCAACGC 57.437 29.630 0.00 0.00 0.00 4.84
33 34 5.945155 TGAAGGTAAATTAATGTCAACGCC 58.055 37.500 0.00 0.00 0.00 5.68
34 35 4.609691 AGGTAAATTAATGTCAACGCCG 57.390 40.909 0.00 0.00 0.00 6.46
35 36 3.103007 GGTAAATTAATGTCAACGCCGC 58.897 45.455 0.00 0.00 0.00 6.53
36 37 3.181504 GGTAAATTAATGTCAACGCCGCT 60.182 43.478 0.00 0.00 0.00 5.52
37 38 4.034279 GGTAAATTAATGTCAACGCCGCTA 59.966 41.667 0.00 0.00 0.00 4.26
38 39 3.944422 AATTAATGTCAACGCCGCTAG 57.056 42.857 0.00 0.00 0.00 3.42
39 40 2.373540 TTAATGTCAACGCCGCTAGT 57.626 45.000 0.00 0.00 0.00 2.57
40 41 1.917273 TAATGTCAACGCCGCTAGTC 58.083 50.000 0.00 0.00 0.00 2.59
41 42 0.037697 AATGTCAACGCCGCTAGTCA 60.038 50.000 0.00 0.00 0.00 3.41
42 43 0.736325 ATGTCAACGCCGCTAGTCAC 60.736 55.000 0.00 0.00 0.00 3.67
43 44 2.126618 TCAACGCCGCTAGTCACG 60.127 61.111 0.00 0.00 0.00 4.35
44 45 3.838795 CAACGCCGCTAGTCACGC 61.839 66.667 0.00 0.00 0.00 5.34
45 46 4.052229 AACGCCGCTAGTCACGCT 62.052 61.111 0.00 0.00 0.00 5.07
46 47 4.778415 ACGCCGCTAGTCACGCTG 62.778 66.667 0.00 0.00 0.00 5.18
47 48 4.476410 CGCCGCTAGTCACGCTGA 62.476 66.667 0.00 0.00 0.00 4.26
58 59 2.908634 GTCACGCTGACTTGTTTCATG 58.091 47.619 9.86 0.00 43.73 3.07
59 60 2.287915 GTCACGCTGACTTGTTTCATGT 59.712 45.455 9.86 0.00 43.73 3.21
60 61 2.287644 TCACGCTGACTTGTTTCATGTG 59.712 45.455 0.00 0.00 35.01 3.21
61 62 1.002468 ACGCTGACTTGTTTCATGTGC 60.002 47.619 0.00 0.00 0.00 4.57
62 63 1.265095 CGCTGACTTGTTTCATGTGCT 59.735 47.619 0.00 0.00 0.00 4.40
63 64 2.480037 CGCTGACTTGTTTCATGTGCTA 59.520 45.455 0.00 0.00 0.00 3.49
64 65 3.058983 CGCTGACTTGTTTCATGTGCTAA 60.059 43.478 0.00 0.00 0.00 3.09
65 66 4.470462 GCTGACTTGTTTCATGTGCTAAG 58.530 43.478 0.00 0.00 0.00 2.18
66 67 4.614535 GCTGACTTGTTTCATGTGCTAAGG 60.615 45.833 0.00 0.00 0.00 2.69
67 68 3.253188 TGACTTGTTTCATGTGCTAAGGC 59.747 43.478 0.00 0.00 39.26 4.35
68 69 2.558359 ACTTGTTTCATGTGCTAAGGCC 59.442 45.455 0.00 0.00 37.74 5.19
69 70 1.544724 TGTTTCATGTGCTAAGGCCC 58.455 50.000 0.00 0.00 37.74 5.80
70 71 0.451783 GTTTCATGTGCTAAGGCCCG 59.548 55.000 0.00 0.00 37.74 6.13
71 72 0.679640 TTTCATGTGCTAAGGCCCGG 60.680 55.000 0.00 0.00 37.74 5.73
74 75 1.077716 ATGTGCTAAGGCCCGGTTC 60.078 57.895 0.00 0.00 37.74 3.62
91 92 6.614160 CCCGGTTCGATAACAAAGTATTTTT 58.386 36.000 0.00 0.00 35.03 1.94
161 164 8.986477 AATTATTGTGAGTTGTTTGATTAGCC 57.014 30.769 0.00 0.00 0.00 3.93
224 232 9.838339 ATACCATGGTATTTTCTCTGTCTAAAG 57.162 33.333 28.50 0.00 38.02 1.85
234 242 5.153950 TCTCTGTCTAAAGAAAAGAGGGC 57.846 43.478 15.70 0.00 37.56 5.19
238 246 1.280998 TCTAAAGAAAAGAGGGCCCGG 59.719 52.381 18.44 0.00 0.00 5.73
279 290 4.254492 AGTAGCTGAAAAAGACGAATCCC 58.746 43.478 0.00 0.00 0.00 3.85
344 355 2.413837 CGCCCGGTTTATTAGGATCTG 58.586 52.381 0.00 0.00 0.00 2.90
345 356 2.224209 CGCCCGGTTTATTAGGATCTGT 60.224 50.000 0.00 0.00 0.00 3.41
346 357 3.400255 GCCCGGTTTATTAGGATCTGTC 58.600 50.000 0.00 0.00 0.00 3.51
348 359 3.319972 CCCGGTTTATTAGGATCTGTCGA 59.680 47.826 0.00 0.00 0.00 4.20
352 363 5.334646 CGGTTTATTAGGATCTGTCGATCGA 60.335 44.000 15.15 15.15 45.66 3.59
365 376 2.474359 GTCGATCGATGATTTGGCTCTG 59.526 50.000 22.50 0.00 0.00 3.35
374 385 3.674997 TGATTTGGCTCTGTGTTAGGAC 58.325 45.455 0.00 0.00 0.00 3.85
383 414 0.034337 TGTGTTAGGACCTTCACCGC 59.966 55.000 19.80 6.55 0.00 5.68
389 420 0.391263 AGGACCTTCACCGCGATTTC 60.391 55.000 8.23 0.00 0.00 2.17
390 421 1.366854 GGACCTTCACCGCGATTTCC 61.367 60.000 8.23 0.00 0.00 3.13
396 427 0.035598 TCACCGCGATTTCCCTCAAA 59.964 50.000 8.23 0.00 0.00 2.69
397 428 0.878416 CACCGCGATTTCCCTCAAAA 59.122 50.000 8.23 0.00 0.00 2.44
438 477 4.811555 TTTGACTCAACGAAACATCCAG 57.188 40.909 0.00 0.00 0.00 3.86
439 478 2.766313 TGACTCAACGAAACATCCAGG 58.234 47.619 0.00 0.00 0.00 4.45
440 479 2.367241 TGACTCAACGAAACATCCAGGA 59.633 45.455 0.00 0.00 0.00 3.86
441 480 2.996621 GACTCAACGAAACATCCAGGAG 59.003 50.000 0.00 0.00 0.00 3.69
442 481 2.368875 ACTCAACGAAACATCCAGGAGT 59.631 45.455 0.00 0.00 0.00 3.85
443 482 3.181454 ACTCAACGAAACATCCAGGAGTT 60.181 43.478 0.00 0.00 30.77 3.01
444 483 4.039973 ACTCAACGAAACATCCAGGAGTTA 59.960 41.667 0.00 0.00 30.77 2.24
445 484 4.566004 TCAACGAAACATCCAGGAGTTAG 58.434 43.478 0.00 1.49 0.00 2.34
446 485 3.611766 ACGAAACATCCAGGAGTTAGG 57.388 47.619 0.00 0.00 0.00 2.69
447 486 2.280628 CGAAACATCCAGGAGTTAGGC 58.719 52.381 0.00 0.00 0.00 3.93
448 487 2.093447 CGAAACATCCAGGAGTTAGGCT 60.093 50.000 0.00 0.00 0.00 4.58
449 488 3.274288 GAAACATCCAGGAGTTAGGCTG 58.726 50.000 0.00 0.00 0.00 4.85
450 489 1.207791 ACATCCAGGAGTTAGGCTGG 58.792 55.000 0.00 0.00 38.26 4.85
451 490 1.207791 CATCCAGGAGTTAGGCTGGT 58.792 55.000 0.00 0.00 38.11 4.00
452 491 1.561542 CATCCAGGAGTTAGGCTGGTT 59.438 52.381 0.00 0.00 38.11 3.67
453 492 2.634639 TCCAGGAGTTAGGCTGGTTA 57.365 50.000 0.00 0.00 38.11 2.85
454 493 2.185387 TCCAGGAGTTAGGCTGGTTAC 58.815 52.381 0.00 0.00 38.11 2.50
455 494 1.209747 CCAGGAGTTAGGCTGGTTACC 59.790 57.143 0.00 0.00 32.67 2.85
456 495 1.906574 CAGGAGTTAGGCTGGTTACCA 59.093 52.381 3.29 3.29 0.00 3.25
457 496 1.907255 AGGAGTTAGGCTGGTTACCAC 59.093 52.381 0.00 0.00 0.00 4.16
458 497 1.626825 GGAGTTAGGCTGGTTACCACA 59.373 52.381 0.00 0.00 0.00 4.17
459 498 2.238898 GGAGTTAGGCTGGTTACCACAT 59.761 50.000 0.00 0.00 0.00 3.21
460 499 3.270877 GAGTTAGGCTGGTTACCACATG 58.729 50.000 0.00 0.00 0.00 3.21
461 500 2.910319 AGTTAGGCTGGTTACCACATGA 59.090 45.455 0.00 0.00 0.00 3.07
462 501 3.007635 GTTAGGCTGGTTACCACATGAC 58.992 50.000 0.00 0.00 0.00 3.06
463 502 1.064003 AGGCTGGTTACCACATGACA 58.936 50.000 0.00 0.00 0.00 3.58
464 503 1.165270 GGCTGGTTACCACATGACAC 58.835 55.000 0.00 0.00 0.00 3.67
465 504 1.544537 GGCTGGTTACCACATGACACA 60.545 52.381 0.00 0.00 0.00 3.72
466 505 2.436417 GCTGGTTACCACATGACACAT 58.564 47.619 0.00 0.00 0.00 3.21
467 506 2.162208 GCTGGTTACCACATGACACATG 59.838 50.000 0.00 9.72 0.00 3.21
468 507 3.411446 CTGGTTACCACATGACACATGT 58.589 45.455 0.00 10.94 0.00 3.21
469 508 3.145286 TGGTTACCACATGACACATGTG 58.855 45.455 27.39 27.39 46.49 3.21
475 514 3.476295 CACATGACACATGTGGTAAGC 57.524 47.619 28.64 13.03 44.04 3.09
476 515 2.162208 CACATGACACATGTGGTAAGCC 59.838 50.000 28.64 11.18 44.04 4.35
477 516 2.224744 ACATGACACATGTGGTAAGCCA 60.225 45.455 28.64 15.78 43.73 4.75
490 529 5.798125 TGGTAAGCCATTCAAACAATTCA 57.202 34.783 0.00 0.00 40.46 2.57
491 530 5.782047 TGGTAAGCCATTCAAACAATTCAG 58.218 37.500 0.00 0.00 40.46 3.02
492 531 5.538053 TGGTAAGCCATTCAAACAATTCAGA 59.462 36.000 0.00 0.00 40.46 3.27
493 532 6.041409 TGGTAAGCCATTCAAACAATTCAGAA 59.959 34.615 0.00 0.00 40.46 3.02
494 533 6.928492 GGTAAGCCATTCAAACAATTCAGAAA 59.072 34.615 0.00 0.00 34.09 2.52
495 534 7.440856 GGTAAGCCATTCAAACAATTCAGAAAA 59.559 33.333 0.00 0.00 34.09 2.29
496 535 7.862512 AAGCCATTCAAACAATTCAGAAAAA 57.137 28.000 0.00 0.00 0.00 1.94
557 638 6.513884 CGTTGGTGAACTAGTCAACTACTGTA 60.514 42.308 17.95 0.00 44.60 2.74
568 649 4.154015 GTCAACTACTGTATGCATGCAACA 59.846 41.667 26.68 25.22 0.00 3.33
578 659 2.116772 ATGCAACAGTGGCTGGCT 59.883 55.556 0.43 0.00 35.51 4.75
737 819 7.444183 TCCTATAACCACATGCTAAAATACTGC 59.556 37.037 0.00 0.00 0.00 4.40
794 876 4.782019 CTGCCAAACACAGCCTAATAAA 57.218 40.909 0.00 0.00 0.00 1.40
798 880 4.381932 GCCAAACACAGCCTAATAAAGCAT 60.382 41.667 0.00 0.00 0.00 3.79
808 890 7.445402 ACAGCCTAATAAAGCATATACACAAGG 59.555 37.037 0.00 0.00 0.00 3.61
836 918 4.083590 GCTTTCTCATGGAGTCAAGTTCAC 60.084 45.833 0.00 0.00 0.00 3.18
869 951 0.320421 AACGAACTGGTCACATCCCG 60.320 55.000 0.00 0.00 0.00 5.14
870 952 1.292223 CGAACTGGTCACATCCCGT 59.708 57.895 0.00 0.00 0.00 5.28
876 958 0.888736 TGGTCACATCCCGTTTGCTG 60.889 55.000 0.00 0.00 0.00 4.41
877 959 1.586154 GGTCACATCCCGTTTGCTGG 61.586 60.000 0.00 0.00 0.00 4.85
888 970 1.459592 CGTTTGCTGGTTTCTAGTCCG 59.540 52.381 0.00 0.00 0.00 4.79
889 971 1.197036 GTTTGCTGGTTTCTAGTCCGC 59.803 52.381 0.00 1.55 0.00 5.54
890 972 0.669318 TTGCTGGTTTCTAGTCCGCG 60.669 55.000 0.00 0.00 0.00 6.46
891 973 1.080025 GCTGGTTTCTAGTCCGCGT 60.080 57.895 4.92 0.00 0.00 6.01
892 974 1.352156 GCTGGTTTCTAGTCCGCGTG 61.352 60.000 4.92 0.00 0.00 5.34
893 975 0.038526 CTGGTTTCTAGTCCGCGTGT 60.039 55.000 4.92 0.00 0.00 4.49
894 976 0.038892 TGGTTTCTAGTCCGCGTGTC 60.039 55.000 4.92 0.00 0.00 3.67
895 977 1.069378 GGTTTCTAGTCCGCGTGTCG 61.069 60.000 4.92 0.00 38.08 4.35
896 978 0.386478 GTTTCTAGTCCGCGTGTCGT 60.386 55.000 4.92 0.00 36.19 4.34
897 979 1.135972 GTTTCTAGTCCGCGTGTCGTA 60.136 52.381 4.92 0.00 36.19 3.43
898 980 0.723414 TTCTAGTCCGCGTGTCGTAG 59.277 55.000 4.92 0.00 36.19 3.51
899 981 1.086067 TCTAGTCCGCGTGTCGTAGG 61.086 60.000 4.92 0.00 36.19 3.18
910 992 2.288030 CGTGTCGTAGGAAAGTTGGACT 60.288 50.000 0.00 0.00 0.00 3.85
915 997 2.685100 GTAGGAAAGTTGGACTCGGTG 58.315 52.381 0.00 0.00 0.00 4.94
916 998 1.129058 AGGAAAGTTGGACTCGGTGT 58.871 50.000 0.00 0.00 0.00 4.16
917 999 2.322658 AGGAAAGTTGGACTCGGTGTA 58.677 47.619 0.00 0.00 0.00 2.90
920 1002 0.320697 AAGTTGGACTCGGTGTAGGC 59.679 55.000 0.00 0.00 0.00 3.93
976 1072 1.329906 GGTCATGCTCAAGCTTCATCG 59.670 52.381 0.00 0.00 42.66 3.84
1270 1387 1.593750 CTATGGAGCAGCGCCACTC 60.594 63.158 21.50 16.77 35.91 3.51
1680 1870 0.385751 TTGATCTCCTCATCGGCGAC 59.614 55.000 13.76 0.00 32.72 5.19
1825 2061 6.876257 GTCATTCAGTTCAACTCTACCTGATT 59.124 38.462 0.00 0.00 0.00 2.57
1859 2107 5.808030 GCAACAGCTACAAAAAGTTGGTAAA 59.192 36.000 11.44 0.00 39.79 2.01
1885 2133 8.927675 AATCCTACTATCTGTACTAGTTCCTG 57.072 38.462 0.00 0.00 31.96 3.86
1916 2884 1.519751 TTGGTATGTGCGGTTGTGGC 61.520 55.000 0.00 0.00 0.00 5.01
1973 2941 1.507141 GGCCAAGAACAGTGTGTCGG 61.507 60.000 0.00 0.00 0.00 4.79
2076 3044 1.518133 CGCGGAGGAGAAGAAGCTG 60.518 63.158 0.00 0.00 0.00 4.24
2316 3302 3.314331 CTGGTCACGGAGGGCAGT 61.314 66.667 0.00 0.00 0.00 4.40
2326 3312 0.324830 GGAGGGCAGTCTAGACAGGT 60.325 60.000 24.44 1.16 0.00 4.00
2341 3327 7.120873 GTCTAGACAGGTATCTCTACAACAACA 59.879 40.741 18.20 0.00 0.00 3.33
2350 3339 4.960938 TCTCTACAACAACAACAGATGCT 58.039 39.130 0.00 0.00 0.00 3.79
2364 3353 0.889994 GATGCTTGACATGGCCACAA 59.110 50.000 8.16 7.44 39.84 3.33
2420 3409 1.115467 CGCTACCTCCATGGAGAGTT 58.885 55.000 38.37 24.69 44.53 3.01
2421 3410 1.482593 CGCTACCTCCATGGAGAGTTT 59.517 52.381 38.37 22.46 44.53 2.66
2520 3509 2.577593 GGGTTAGCTCGGCTCGTT 59.422 61.111 1.46 0.00 40.44 3.85
2601 3590 1.666872 CCCGGAGTTCGTCAACACC 60.667 63.158 0.73 0.00 39.30 4.16
2634 3623 2.676839 CACCGACTCTGACGTGTATAGT 59.323 50.000 0.00 0.00 0.00 2.12
2664 3653 2.484065 CGTCCTACTGGAGATCGTCTCT 60.484 54.545 12.62 3.09 44.16 3.10
2672 3661 3.532155 GATCGTCTCTGGCCGGCT 61.532 66.667 28.56 1.55 0.00 5.52
2887 3876 1.926511 GCAGGCCATGAACGTCCTTG 61.927 60.000 5.01 0.00 0.00 3.61
2935 3924 1.252904 ACCGCCGTACATGTACAGGT 61.253 55.000 30.17 28.94 35.87 4.00
2960 3952 3.782443 GCCGGATCCTGGGTCGTT 61.782 66.667 19.88 0.00 0.00 3.85
3047 4057 0.536460 ACCGGCGACACCATTCTTTT 60.536 50.000 9.30 0.00 39.03 2.27
3068 4078 2.885861 GGACTCATCGCCGACTGT 59.114 61.111 0.00 0.00 0.00 3.55
3093 4103 2.962421 GGTTTCATGTTCCAGGTTTCCA 59.038 45.455 0.00 0.00 0.00 3.53
3099 4109 1.489649 TGTTCCAGGTTTCCAACGGTA 59.510 47.619 0.00 0.00 0.00 4.02
3104 4114 2.285977 CAGGTTTCCAACGGTATAGCC 58.714 52.381 0.00 0.00 0.00 3.93
3106 4116 2.306512 AGGTTTCCAACGGTATAGCCAA 59.693 45.455 0.00 0.00 36.97 4.52
3109 4119 4.883006 GGTTTCCAACGGTATAGCCAATTA 59.117 41.667 0.00 0.00 36.97 1.40
3110 4120 5.008316 GGTTTCCAACGGTATAGCCAATTAG 59.992 44.000 0.00 0.00 36.97 1.73
3112 4122 6.482898 TTCCAACGGTATAGCCAATTAGTA 57.517 37.500 0.00 0.00 36.97 1.82
3114 4124 7.069877 TCCAACGGTATAGCCAATTAGTAAT 57.930 36.000 0.00 0.00 36.97 1.89
3115 4125 7.156673 TCCAACGGTATAGCCAATTAGTAATC 58.843 38.462 0.00 0.00 36.97 1.75
3116 4126 6.932400 CCAACGGTATAGCCAATTAGTAATCA 59.068 38.462 0.00 0.00 36.97 2.57
3118 4128 8.495949 CAACGGTATAGCCAATTAGTAATCAAG 58.504 37.037 0.00 0.00 36.97 3.02
3119 4129 7.959175 ACGGTATAGCCAATTAGTAATCAAGA 58.041 34.615 0.00 0.00 36.97 3.02
3120 4130 8.594550 ACGGTATAGCCAATTAGTAATCAAGAT 58.405 33.333 0.00 0.00 36.97 2.40
3121 4131 9.436957 CGGTATAGCCAATTAGTAATCAAGATT 57.563 33.333 0.00 0.52 36.97 2.40
3130 4140 7.964604 ATTAGTAATCAAGATTCGTAAGGCC 57.035 36.000 0.00 0.00 38.47 5.19
3134 4144 4.696479 ATCAAGATTCGTAAGGCCTCAT 57.304 40.909 5.23 0.00 38.47 2.90
3144 4154 6.920569 TCGTAAGGCCTCATTAATTTTCTC 57.079 37.500 5.23 0.00 38.47 2.87
3145 4155 5.820947 TCGTAAGGCCTCATTAATTTTCTCC 59.179 40.000 5.23 0.00 38.47 3.71
3150 4160 6.974795 AGGCCTCATTAATTTTCTCCTTACT 58.025 36.000 0.00 0.00 0.00 2.24
3151 4161 8.102484 AGGCCTCATTAATTTTCTCCTTACTA 57.898 34.615 0.00 0.00 0.00 1.82
3152 4162 7.993758 AGGCCTCATTAATTTTCTCCTTACTAC 59.006 37.037 0.00 0.00 0.00 2.73
3153 4163 7.228906 GGCCTCATTAATTTTCTCCTTACTACC 59.771 40.741 0.00 0.00 0.00 3.18
3154 4164 7.041984 GCCTCATTAATTTTCTCCTTACTACCG 60.042 40.741 0.00 0.00 0.00 4.02
3155 4165 7.985752 CCTCATTAATTTTCTCCTTACTACCGT 59.014 37.037 0.00 0.00 0.00 4.83
3156 4166 9.379791 CTCATTAATTTTCTCCTTACTACCGTT 57.620 33.333 0.00 0.00 0.00 4.44
3176 4186 7.441836 ACCGTTATATTGATATTGACAGCAGA 58.558 34.615 0.00 0.00 0.00 4.26
3192 4202 9.985730 TTGACAGCAGAAATTATTTTGAGAAAT 57.014 25.926 0.00 0.00 38.88 2.17
3216 4226 9.760077 AATATGGAAAAATAGTCGTTATCGAGT 57.240 29.630 8.50 8.50 46.96 4.18
3217 4227 9.760077 ATATGGAAAAATAGTCGTTATCGAGTT 57.240 29.630 8.73 0.00 45.86 3.01
3218 4228 7.515957 TGGAAAAATAGTCGTTATCGAGTTC 57.484 36.000 8.73 0.99 45.86 3.01
3219 4229 7.318141 TGGAAAAATAGTCGTTATCGAGTTCT 58.682 34.615 8.73 0.25 45.86 3.01
3220 4230 8.461222 TGGAAAAATAGTCGTTATCGAGTTCTA 58.539 33.333 8.73 2.37 45.86 2.10
3221 4231 9.460906 GGAAAAATAGTCGTTATCGAGTTCTAT 57.539 33.333 8.73 4.42 45.86 1.98
3229 4239 9.875675 AGTCGTTATCGAGTTCTATTATGTTAC 57.124 33.333 0.00 0.00 45.86 2.50
3230 4240 8.825718 GTCGTTATCGAGTTCTATTATGTTACG 58.174 37.037 0.00 0.00 46.96 3.18
3231 4241 8.011673 TCGTTATCGAGTTCTATTATGTTACGG 58.988 37.037 0.00 0.00 41.35 4.02
3232 4242 7.800380 CGTTATCGAGTTCTATTATGTTACGGT 59.200 37.037 0.00 0.00 39.71 4.83
3236 4246 8.841444 TCGAGTTCTATTATGTTACGGTAAAC 57.159 34.615 1.47 0.00 0.00 2.01
3237 4247 8.458052 TCGAGTTCTATTATGTTACGGTAAACA 58.542 33.333 1.47 4.21 43.16 2.83
3238 4248 8.526681 CGAGTTCTATTATGTTACGGTAAACAC 58.473 37.037 1.47 0.00 41.89 3.32
3239 4249 9.578439 GAGTTCTATTATGTTACGGTAAACACT 57.422 33.333 1.47 0.00 41.89 3.55
3255 4265 9.539139 CGGTAAACACTATATAATCTGACTACG 57.461 37.037 0.00 0.00 0.00 3.51
3256 4266 9.339492 GGTAAACACTATATAATCTGACTACGC 57.661 37.037 0.00 0.00 0.00 4.42
3259 4269 8.624367 AACACTATATAATCTGACTACGCTCT 57.376 34.615 0.00 0.00 0.00 4.09
3260 4270 8.259049 ACACTATATAATCTGACTACGCTCTC 57.741 38.462 0.00 0.00 0.00 3.20
3261 4271 7.334921 ACACTATATAATCTGACTACGCTCTCC 59.665 40.741 0.00 0.00 0.00 3.71
3262 4272 5.804692 ATATAATCTGACTACGCTCTCCG 57.195 43.478 0.00 0.00 44.21 4.63
3277 4287 6.680874 CGCTCTCCGTAATTAGTAGGATAT 57.319 41.667 5.13 0.00 31.66 1.63
3278 4288 6.487960 CGCTCTCCGTAATTAGTAGGATATG 58.512 44.000 5.13 1.85 31.66 1.78
3279 4289 6.315642 CGCTCTCCGTAATTAGTAGGATATGA 59.684 42.308 5.13 0.74 31.66 2.15
3280 4290 7.474190 GCTCTCCGTAATTAGTAGGATATGAC 58.526 42.308 5.13 0.00 31.66 3.06
3281 4291 7.120873 GCTCTCCGTAATTAGTAGGATATGACA 59.879 40.741 5.13 0.00 31.66 3.58
3282 4292 8.332996 TCTCCGTAATTAGTAGGATATGACAC 57.667 38.462 5.13 0.00 31.66 3.67
3283 4293 7.940688 TCTCCGTAATTAGTAGGATATGACACA 59.059 37.037 5.13 0.00 31.66 3.72
3284 4294 7.879070 TCCGTAATTAGTAGGATATGACACAC 58.121 38.462 1.35 0.00 0.00 3.82
3285 4295 6.800408 CCGTAATTAGTAGGATATGACACACG 59.200 42.308 0.00 0.00 0.00 4.49
3286 4296 7.358066 CGTAATTAGTAGGATATGACACACGT 58.642 38.462 0.00 0.00 0.00 4.49
3287 4297 7.533222 CGTAATTAGTAGGATATGACACACGTC 59.467 40.741 0.00 0.00 42.93 4.34
3302 4312 2.477405 CGTCATACGTTACCGAGCG 58.523 57.895 0.00 0.00 36.74 5.03
3303 4313 1.526617 CGTCATACGTTACCGAGCGC 61.527 60.000 0.00 0.00 36.74 5.92
3304 4314 1.064621 TCATACGTTACCGAGCGCC 59.935 57.895 2.29 0.00 37.88 6.53
3305 4315 1.947642 CATACGTTACCGAGCGCCC 60.948 63.158 2.29 0.00 37.88 6.13
3306 4316 3.474230 ATACGTTACCGAGCGCCCG 62.474 63.158 3.55 3.55 37.88 6.13
3309 4319 4.424566 GTTACCGAGCGCCCGACA 62.425 66.667 14.72 0.00 0.00 4.35
3310 4320 3.682885 TTACCGAGCGCCCGACAA 61.683 61.111 14.72 2.82 0.00 3.18
3311 4321 3.009192 TTACCGAGCGCCCGACAAT 62.009 57.895 14.72 0.00 0.00 2.71
3312 4322 1.665264 TTACCGAGCGCCCGACAATA 61.665 55.000 14.72 0.00 0.00 1.90
3313 4323 1.665264 TACCGAGCGCCCGACAATAA 61.665 55.000 14.72 0.00 0.00 1.40
3314 4324 1.812093 CCGAGCGCCCGACAATAAA 60.812 57.895 14.72 0.00 0.00 1.40
3315 4325 1.363145 CCGAGCGCCCGACAATAAAA 61.363 55.000 14.72 0.00 0.00 1.52
3316 4326 0.655733 CGAGCGCCCGACAATAAAAT 59.344 50.000 4.91 0.00 0.00 1.82
3317 4327 1.862201 CGAGCGCCCGACAATAAAATA 59.138 47.619 4.91 0.00 0.00 1.40
3318 4328 2.348218 CGAGCGCCCGACAATAAAATAC 60.348 50.000 4.91 0.00 0.00 1.89
3319 4329 2.870411 GAGCGCCCGACAATAAAATACT 59.130 45.455 2.29 0.00 0.00 2.12
3320 4330 2.870411 AGCGCCCGACAATAAAATACTC 59.130 45.455 2.29 0.00 0.00 2.59
3321 4331 2.610374 GCGCCCGACAATAAAATACTCA 59.390 45.455 0.00 0.00 0.00 3.41
3322 4332 3.303132 GCGCCCGACAATAAAATACTCAG 60.303 47.826 0.00 0.00 0.00 3.35
3323 4333 3.303132 CGCCCGACAATAAAATACTCAGC 60.303 47.826 0.00 0.00 0.00 4.26
3324 4334 3.625764 GCCCGACAATAAAATACTCAGCA 59.374 43.478 0.00 0.00 0.00 4.41
3325 4335 4.095782 GCCCGACAATAAAATACTCAGCAA 59.904 41.667 0.00 0.00 0.00 3.91
3326 4336 5.392595 GCCCGACAATAAAATACTCAGCAAA 60.393 40.000 0.00 0.00 0.00 3.68
3327 4337 6.027749 CCCGACAATAAAATACTCAGCAAAC 58.972 40.000 0.00 0.00 0.00 2.93
3328 4338 6.348950 CCCGACAATAAAATACTCAGCAAACA 60.349 38.462 0.00 0.00 0.00 2.83
3329 4339 7.081349 CCGACAATAAAATACTCAGCAAACAA 58.919 34.615 0.00 0.00 0.00 2.83
3330 4340 7.593273 CCGACAATAAAATACTCAGCAAACAAA 59.407 33.333 0.00 0.00 0.00 2.83
3331 4341 8.629986 CGACAATAAAATACTCAGCAAACAAAG 58.370 33.333 0.00 0.00 0.00 2.77
3332 4342 9.677567 GACAATAAAATACTCAGCAAACAAAGA 57.322 29.630 0.00 0.00 0.00 2.52
3338 4348 8.634475 AAATACTCAGCAAACAAAGAAAACTC 57.366 30.769 0.00 0.00 0.00 3.01
3339 4349 4.662145 ACTCAGCAAACAAAGAAAACTCG 58.338 39.130 0.00 0.00 0.00 4.18
3340 4350 4.027572 TCAGCAAACAAAGAAAACTCGG 57.972 40.909 0.00 0.00 0.00 4.63
3341 4351 2.535574 CAGCAAACAAAGAAAACTCGGC 59.464 45.455 0.00 0.00 0.00 5.54
3342 4352 2.427095 AGCAAACAAAGAAAACTCGGCT 59.573 40.909 0.00 0.00 0.00 5.52
3343 4353 3.119137 AGCAAACAAAGAAAACTCGGCTT 60.119 39.130 0.00 0.00 0.00 4.35
3344 4354 4.097286 AGCAAACAAAGAAAACTCGGCTTA 59.903 37.500 0.00 0.00 0.00 3.09
3345 4355 4.982295 GCAAACAAAGAAAACTCGGCTTAT 59.018 37.500 0.00 0.00 0.00 1.73
3346 4356 5.107875 GCAAACAAAGAAAACTCGGCTTATG 60.108 40.000 0.00 0.00 0.00 1.90
3347 4357 4.766404 ACAAAGAAAACTCGGCTTATGG 57.234 40.909 0.00 0.00 0.00 2.74
3348 4358 3.506067 ACAAAGAAAACTCGGCTTATGGG 59.494 43.478 0.00 0.00 0.00 4.00
3349 4359 3.713826 AAGAAAACTCGGCTTATGGGA 57.286 42.857 0.00 0.00 0.00 4.37
3350 4360 2.987232 AGAAAACTCGGCTTATGGGAC 58.013 47.619 0.00 0.00 0.00 4.46
3351 4361 1.664151 GAAAACTCGGCTTATGGGACG 59.336 52.381 0.00 0.00 39.37 4.79
3352 4362 0.611714 AAACTCGGCTTATGGGACGT 59.388 50.000 0.00 0.00 39.03 4.34
3353 4363 1.477553 AACTCGGCTTATGGGACGTA 58.522 50.000 0.00 0.00 39.03 3.57
3354 4364 1.700955 ACTCGGCTTATGGGACGTAT 58.299 50.000 0.00 0.00 39.03 3.06
3355 4365 1.340248 ACTCGGCTTATGGGACGTATG 59.660 52.381 0.00 0.00 39.03 2.39
3356 4366 0.032952 TCGGCTTATGGGACGTATGC 59.967 55.000 0.00 0.00 39.03 3.14
3357 4367 0.033504 CGGCTTATGGGACGTATGCT 59.966 55.000 0.00 0.00 32.39 3.79
3358 4368 1.512926 GGCTTATGGGACGTATGCTG 58.487 55.000 0.00 0.00 0.00 4.41
3359 4369 1.070134 GGCTTATGGGACGTATGCTGA 59.930 52.381 0.00 0.00 0.00 4.26
3360 4370 2.408050 GCTTATGGGACGTATGCTGAG 58.592 52.381 0.00 0.00 0.00 3.35
3361 4371 2.035961 GCTTATGGGACGTATGCTGAGA 59.964 50.000 0.00 0.00 0.00 3.27
3362 4372 3.858877 GCTTATGGGACGTATGCTGAGAG 60.859 52.174 0.00 0.00 0.00 3.20
3363 4373 0.390860 ATGGGACGTATGCTGAGAGC 59.609 55.000 0.00 0.00 42.82 4.09
3364 4374 1.068250 GGGACGTATGCTGAGAGCC 59.932 63.158 0.00 0.00 41.51 4.70
3365 4375 1.299468 GGACGTATGCTGAGAGCCG 60.299 63.158 0.00 0.00 41.51 5.52
3366 4376 1.946650 GACGTATGCTGAGAGCCGC 60.947 63.158 0.00 0.00 41.51 6.53
3367 4377 2.104928 CGTATGCTGAGAGCCGCA 59.895 61.111 0.00 0.00 41.51 5.69
3368 4378 2.233654 CGTATGCTGAGAGCCGCAC 61.234 63.158 0.00 0.00 41.51 5.34
3369 4379 1.884926 GTATGCTGAGAGCCGCACC 60.885 63.158 0.00 0.00 41.51 5.01
3370 4380 2.060383 TATGCTGAGAGCCGCACCT 61.060 57.895 0.00 0.00 41.51 4.00
3371 4381 0.755327 TATGCTGAGAGCCGCACCTA 60.755 55.000 0.00 0.00 41.51 3.08
3372 4382 2.202810 GCTGAGAGCCGCACCTAC 60.203 66.667 0.00 0.00 34.48 3.18
3373 4383 2.103143 CTGAGAGCCGCACCTACG 59.897 66.667 0.00 0.00 0.00 3.51
3390 4400 3.365265 GGCACCCGGTCAGCAAAG 61.365 66.667 0.00 0.00 0.00 2.77
3391 4401 2.281484 GCACCCGGTCAGCAAAGA 60.281 61.111 0.00 0.00 0.00 2.52
3392 4402 2.328099 GCACCCGGTCAGCAAAGAG 61.328 63.158 0.00 0.00 0.00 2.85
3393 4403 1.672356 CACCCGGTCAGCAAAGAGG 60.672 63.158 0.00 0.00 0.00 3.69
3394 4404 2.147387 ACCCGGTCAGCAAAGAGGT 61.147 57.895 0.00 0.00 0.00 3.85
3395 4405 1.672356 CCCGGTCAGCAAAGAGGTG 60.672 63.158 0.00 0.00 46.98 4.00
3396 4406 1.071471 CCGGTCAGCAAAGAGGTGT 59.929 57.895 0.00 0.00 45.77 4.16
3397 4407 0.951040 CCGGTCAGCAAAGAGGTGTC 60.951 60.000 0.00 0.00 45.77 3.67
3398 4408 0.249868 CGGTCAGCAAAGAGGTGTCA 60.250 55.000 0.00 0.00 45.77 3.58
3399 4409 1.609061 CGGTCAGCAAAGAGGTGTCAT 60.609 52.381 0.00 0.00 45.77 3.06
3400 4410 1.808945 GGTCAGCAAAGAGGTGTCATG 59.191 52.381 0.00 0.00 45.77 3.07
3401 4411 2.498167 GTCAGCAAAGAGGTGTCATGT 58.502 47.619 0.00 0.00 45.77 3.21
3402 4412 2.225019 GTCAGCAAAGAGGTGTCATGTG 59.775 50.000 0.00 0.00 45.77 3.21
3403 4413 1.538512 CAGCAAAGAGGTGTCATGTGG 59.461 52.381 0.00 0.00 40.80 4.17
3404 4414 0.242017 GCAAAGAGGTGTCATGTGGC 59.758 55.000 0.00 0.00 0.00 5.01
3405 4415 1.608055 CAAAGAGGTGTCATGTGGCA 58.392 50.000 0.00 0.00 0.00 4.92
3420 4430 2.339712 GCACCGCCATTTGCAGTT 59.660 55.556 0.00 0.00 41.33 3.16
3421 4431 2.023223 GCACCGCCATTTGCAGTTG 61.023 57.895 0.00 0.00 41.33 3.16
3422 4432 1.659233 CACCGCCATTTGCAGTTGA 59.341 52.632 0.00 0.00 41.33 3.18
3423 4433 0.244450 CACCGCCATTTGCAGTTGAT 59.756 50.000 0.00 0.00 41.33 2.57
3424 4434 0.244450 ACCGCCATTTGCAGTTGATG 59.756 50.000 0.00 0.00 41.33 3.07
3425 4435 0.458889 CCGCCATTTGCAGTTGATGG 60.459 55.000 13.18 13.18 42.54 3.51
3428 4438 2.288961 CCATTTGCAGTTGATGGCTC 57.711 50.000 7.31 0.00 34.47 4.70
3429 4439 1.134907 CCATTTGCAGTTGATGGCTCC 60.135 52.381 7.31 0.00 34.47 4.70
3430 4440 1.546923 CATTTGCAGTTGATGGCTCCA 59.453 47.619 0.00 0.00 0.00 3.86
3431 4441 1.927487 TTTGCAGTTGATGGCTCCAT 58.073 45.000 0.14 0.14 39.69 3.41
3432 4442 1.179152 TTGCAGTTGATGGCTCCATG 58.821 50.000 6.07 0.00 36.70 3.66
3433 4443 0.038599 TGCAGTTGATGGCTCCATGT 59.961 50.000 6.07 0.00 36.70 3.21
3434 4444 0.454600 GCAGTTGATGGCTCCATGTG 59.545 55.000 6.07 0.31 36.70 3.21
3435 4445 1.100510 CAGTTGATGGCTCCATGTGG 58.899 55.000 6.07 0.00 36.70 4.17
3436 4446 0.994247 AGTTGATGGCTCCATGTGGA 59.006 50.000 6.07 1.17 43.08 4.02
3437 4447 1.098050 GTTGATGGCTCCATGTGGAC 58.902 55.000 6.07 0.00 39.78 4.02
3438 4448 0.392863 TTGATGGCTCCATGTGGACG 60.393 55.000 6.07 0.00 39.78 4.79
3439 4449 1.524621 GATGGCTCCATGTGGACGG 60.525 63.158 6.07 0.00 39.78 4.79
3440 4450 2.947938 GATGGCTCCATGTGGACGGG 62.948 65.000 6.07 0.00 39.78 5.28
3442 4452 4.408821 GCTCCATGTGGACGGGCA 62.409 66.667 0.00 0.00 39.78 5.36
3443 4453 2.350895 CTCCATGTGGACGGGCAA 59.649 61.111 0.00 0.00 39.78 4.52
3444 4454 2.033448 TCCATGTGGACGGGCAAC 59.967 61.111 0.00 0.00 39.78 4.17
3454 4464 3.763319 CGGGCAACGTTCGTAGAG 58.237 61.111 0.00 0.00 37.93 2.43
3455 4465 1.210931 CGGGCAACGTTCGTAGAGA 59.789 57.895 0.00 0.00 37.93 3.10
3456 4466 0.387622 CGGGCAACGTTCGTAGAGAA 60.388 55.000 0.00 0.00 37.93 2.87
3471 4481 7.976135 TCGTAGAGAACCCAATATCTAGTAC 57.024 40.000 0.00 0.00 0.00 2.73
3472 4482 7.743749 TCGTAGAGAACCCAATATCTAGTACT 58.256 38.462 0.00 0.00 0.00 2.73
3473 4483 7.877097 TCGTAGAGAACCCAATATCTAGTACTC 59.123 40.741 0.00 0.00 0.00 2.59
3474 4484 7.148606 CGTAGAGAACCCAATATCTAGTACTCG 60.149 44.444 0.00 0.00 0.00 4.18
3475 4485 6.005198 AGAGAACCCAATATCTAGTACTCGG 58.995 44.000 0.00 0.00 0.00 4.63
3476 4486 4.523558 AGAACCCAATATCTAGTACTCGGC 59.476 45.833 0.00 0.00 0.00 5.54
3477 4487 3.840991 ACCCAATATCTAGTACTCGGCA 58.159 45.455 0.00 0.00 0.00 5.69
3478 4488 4.220724 ACCCAATATCTAGTACTCGGCAA 58.779 43.478 0.00 0.00 0.00 4.52
3479 4489 4.652421 ACCCAATATCTAGTACTCGGCAAA 59.348 41.667 0.00 0.00 0.00 3.68
3480 4490 4.989168 CCCAATATCTAGTACTCGGCAAAC 59.011 45.833 0.00 0.00 0.00 2.93
3481 4491 5.221461 CCCAATATCTAGTACTCGGCAAACT 60.221 44.000 0.00 0.00 0.00 2.66
3482 4492 6.015688 CCCAATATCTAGTACTCGGCAAACTA 60.016 42.308 0.00 0.00 0.00 2.24
3483 4493 7.309867 CCCAATATCTAGTACTCGGCAAACTAT 60.310 40.741 0.00 0.00 0.00 2.12
3484 4494 7.542477 CCAATATCTAGTACTCGGCAAACTATG 59.458 40.741 0.00 0.00 0.00 2.23
3499 4509 6.449635 CAAACTATGCACTATTTAAGCCCA 57.550 37.500 0.00 0.00 0.00 5.36
3500 4510 7.042797 CAAACTATGCACTATTTAAGCCCAT 57.957 36.000 0.00 0.00 0.00 4.00
3501 4511 6.884280 AACTATGCACTATTTAAGCCCATC 57.116 37.500 0.00 0.00 0.00 3.51
3502 4512 5.316987 ACTATGCACTATTTAAGCCCATCC 58.683 41.667 0.00 0.00 0.00 3.51
3503 4513 3.951563 TGCACTATTTAAGCCCATCCT 57.048 42.857 0.00 0.00 0.00 3.24
3504 4514 3.820557 TGCACTATTTAAGCCCATCCTC 58.179 45.455 0.00 0.00 0.00 3.71
3505 4515 3.149981 GCACTATTTAAGCCCATCCTCC 58.850 50.000 0.00 0.00 0.00 4.30
3506 4516 3.403038 CACTATTTAAGCCCATCCTCCG 58.597 50.000 0.00 0.00 0.00 4.63
3507 4517 2.224548 ACTATTTAAGCCCATCCTCCGC 60.225 50.000 0.00 0.00 0.00 5.54
3508 4518 0.178990 ATTTAAGCCCATCCTCCGCC 60.179 55.000 0.00 0.00 0.00 6.13
3509 4519 1.279025 TTTAAGCCCATCCTCCGCCT 61.279 55.000 0.00 0.00 0.00 5.52
3510 4520 1.279025 TTAAGCCCATCCTCCGCCTT 61.279 55.000 0.00 0.00 0.00 4.35
3511 4521 1.983119 TAAGCCCATCCTCCGCCTTG 61.983 60.000 0.00 0.00 0.00 3.61
3513 4523 4.113815 CCCATCCTCCGCCTTGCA 62.114 66.667 0.00 0.00 0.00 4.08
3514 4524 2.194056 CCATCCTCCGCCTTGCAT 59.806 61.111 0.00 0.00 0.00 3.96
3515 4525 1.895707 CCATCCTCCGCCTTGCATC 60.896 63.158 0.00 0.00 0.00 3.91
3516 4526 1.895707 CATCCTCCGCCTTGCATCC 60.896 63.158 0.00 0.00 0.00 3.51
3517 4527 2.377810 ATCCTCCGCCTTGCATCCA 61.378 57.895 0.00 0.00 0.00 3.41
3518 4528 1.925285 ATCCTCCGCCTTGCATCCAA 61.925 55.000 0.00 0.00 0.00 3.53
3519 4529 1.678635 CCTCCGCCTTGCATCCAAA 60.679 57.895 0.00 0.00 0.00 3.28
3520 4530 1.508088 CTCCGCCTTGCATCCAAAC 59.492 57.895 0.00 0.00 0.00 2.93
3521 4531 1.937546 CTCCGCCTTGCATCCAAACC 61.938 60.000 0.00 0.00 0.00 3.27
3522 4532 1.978617 CCGCCTTGCATCCAAACCT 60.979 57.895 0.00 0.00 0.00 3.50
3523 4533 0.679640 CCGCCTTGCATCCAAACCTA 60.680 55.000 0.00 0.00 0.00 3.08
3524 4534 0.734889 CGCCTTGCATCCAAACCTAG 59.265 55.000 0.00 0.00 0.00 3.02
3525 4535 0.457443 GCCTTGCATCCAAACCTAGC 59.543 55.000 0.00 0.00 0.00 3.42
3526 4536 1.957113 GCCTTGCATCCAAACCTAGCT 60.957 52.381 0.00 0.00 0.00 3.32
3527 4537 1.747355 CCTTGCATCCAAACCTAGCTG 59.253 52.381 0.00 0.00 0.00 4.24
3528 4538 2.440409 CTTGCATCCAAACCTAGCTGT 58.560 47.619 0.00 0.00 0.00 4.40
3529 4539 2.113860 TGCATCCAAACCTAGCTGTC 57.886 50.000 0.00 0.00 0.00 3.51
3530 4540 1.009829 GCATCCAAACCTAGCTGTCG 58.990 55.000 0.00 0.00 0.00 4.35
3531 4541 1.656652 CATCCAAACCTAGCTGTCGG 58.343 55.000 0.00 0.00 0.00 4.79
3532 4542 0.107654 ATCCAAACCTAGCTGTCGGC 60.108 55.000 0.00 0.00 42.19 5.54
3533 4543 1.745489 CCAAACCTAGCTGTCGGCC 60.745 63.158 0.00 0.00 43.05 6.13
3534 4544 2.100631 CAAACCTAGCTGTCGGCCG 61.101 63.158 22.12 22.12 43.05 6.13
3535 4545 3.952628 AAACCTAGCTGTCGGCCGC 62.953 63.158 23.51 16.75 43.05 6.53
3686 4702 2.499214 AAAAACTGCAGCCGGTGAA 58.501 47.368 15.27 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.562583 GCGTTGACATTAATTTACCTTCAATAA 57.437 29.630 0.00 0.00 0.00 1.40
7 8 8.185505 GGCGTTGACATTAATTTACCTTCAATA 58.814 33.333 0.00 0.00 0.00 1.90
8 9 7.033185 GGCGTTGACATTAATTTACCTTCAAT 58.967 34.615 0.00 0.00 0.00 2.57
10 11 5.391097 CGGCGTTGACATTAATTTACCTTCA 60.391 40.000 0.00 0.00 0.00 3.02
11 12 5.025826 CGGCGTTGACATTAATTTACCTTC 58.974 41.667 0.00 0.00 0.00 3.46
12 13 4.673320 GCGGCGTTGACATTAATTTACCTT 60.673 41.667 9.37 0.00 0.00 3.50
13 14 3.181504 GCGGCGTTGACATTAATTTACCT 60.182 43.478 9.37 0.00 0.00 3.08
14 15 3.103007 GCGGCGTTGACATTAATTTACC 58.897 45.455 9.37 0.00 0.00 2.85
15 16 4.011058 AGCGGCGTTGACATTAATTTAC 57.989 40.909 9.37 0.00 0.00 2.01
16 17 4.871557 ACTAGCGGCGTTGACATTAATTTA 59.128 37.500 9.37 0.00 0.00 1.40
17 18 3.687698 ACTAGCGGCGTTGACATTAATTT 59.312 39.130 9.37 0.00 0.00 1.82
18 19 3.267483 ACTAGCGGCGTTGACATTAATT 58.733 40.909 9.37 0.00 0.00 1.40
19 20 2.864343 GACTAGCGGCGTTGACATTAAT 59.136 45.455 9.37 0.00 0.00 1.40
20 21 2.264813 GACTAGCGGCGTTGACATTAA 58.735 47.619 9.37 0.00 0.00 1.40
21 22 1.202817 TGACTAGCGGCGTTGACATTA 59.797 47.619 9.37 0.00 0.00 1.90
22 23 0.037697 TGACTAGCGGCGTTGACATT 60.038 50.000 9.37 0.00 0.00 2.71
23 24 0.736325 GTGACTAGCGGCGTTGACAT 60.736 55.000 9.37 0.00 0.00 3.06
24 25 1.372499 GTGACTAGCGGCGTTGACA 60.372 57.895 9.37 1.94 0.00 3.58
25 26 2.434134 CGTGACTAGCGGCGTTGAC 61.434 63.158 9.37 0.00 0.00 3.18
26 27 2.126618 CGTGACTAGCGGCGTTGA 60.127 61.111 9.37 0.00 0.00 3.18
27 28 3.838795 GCGTGACTAGCGGCGTTG 61.839 66.667 9.37 1.24 0.00 4.10
28 29 4.052229 AGCGTGACTAGCGGCGTT 62.052 61.111 9.37 4.68 40.04 4.84
29 30 4.778415 CAGCGTGACTAGCGGCGT 62.778 66.667 9.37 0.00 40.04 5.68
30 31 4.476410 TCAGCGTGACTAGCGGCG 62.476 66.667 0.51 0.51 40.04 6.46
31 32 2.881352 GTCAGCGTGACTAGCGGC 60.881 66.667 9.86 0.00 43.73 6.53
39 40 2.287644 CACATGAAACAAGTCAGCGTGA 59.712 45.455 0.00 0.00 37.18 4.35
40 41 2.642995 CACATGAAACAAGTCAGCGTG 58.357 47.619 0.00 0.00 32.04 5.34
41 42 1.002468 GCACATGAAACAAGTCAGCGT 60.002 47.619 0.00 0.00 0.00 5.07
42 43 1.265095 AGCACATGAAACAAGTCAGCG 59.735 47.619 0.00 0.00 0.00 5.18
43 44 4.470462 CTTAGCACATGAAACAAGTCAGC 58.530 43.478 0.00 0.00 0.00 4.26
44 45 4.614535 GCCTTAGCACATGAAACAAGTCAG 60.615 45.833 0.00 0.00 39.53 3.51
45 46 3.253188 GCCTTAGCACATGAAACAAGTCA 59.747 43.478 0.00 0.00 39.53 3.41
46 47 3.366374 GGCCTTAGCACATGAAACAAGTC 60.366 47.826 0.00 0.00 42.56 3.01
47 48 2.558359 GGCCTTAGCACATGAAACAAGT 59.442 45.455 0.00 0.00 42.56 3.16
48 49 2.094545 GGGCCTTAGCACATGAAACAAG 60.095 50.000 0.84 0.00 44.19 3.16
49 50 1.892474 GGGCCTTAGCACATGAAACAA 59.108 47.619 0.84 0.00 44.19 2.83
50 51 1.544724 GGGCCTTAGCACATGAAACA 58.455 50.000 0.84 0.00 44.19 2.83
51 52 0.451783 CGGGCCTTAGCACATGAAAC 59.548 55.000 0.84 0.00 45.52 2.78
52 53 0.679640 CCGGGCCTTAGCACATGAAA 60.680 55.000 0.84 0.00 45.52 2.69
53 54 1.077787 CCGGGCCTTAGCACATGAA 60.078 57.895 0.84 0.00 45.52 2.57
54 55 1.847798 AACCGGGCCTTAGCACATGA 61.848 55.000 6.32 0.00 45.52 3.07
55 56 1.376609 GAACCGGGCCTTAGCACATG 61.377 60.000 6.32 0.00 45.52 3.21
56 57 1.077716 GAACCGGGCCTTAGCACAT 60.078 57.895 6.32 0.00 45.52 3.21
57 58 2.349755 GAACCGGGCCTTAGCACA 59.650 61.111 6.32 0.00 45.52 4.57
58 59 2.588856 ATCGAACCGGGCCTTAGCAC 62.589 60.000 6.32 0.00 42.56 4.40
59 60 1.044231 TATCGAACCGGGCCTTAGCA 61.044 55.000 6.32 0.00 42.56 3.49
60 61 0.105408 TTATCGAACCGGGCCTTAGC 59.895 55.000 6.32 0.00 38.76 3.09
61 62 1.137479 TGTTATCGAACCGGGCCTTAG 59.863 52.381 6.32 0.00 34.38 2.18
62 63 1.193323 TGTTATCGAACCGGGCCTTA 58.807 50.000 6.32 0.00 34.38 2.69
63 64 0.325602 TTGTTATCGAACCGGGCCTT 59.674 50.000 6.32 0.00 34.38 4.35
64 65 0.325602 TTTGTTATCGAACCGGGCCT 59.674 50.000 6.32 0.00 34.38 5.19
65 66 0.730840 CTTTGTTATCGAACCGGGCC 59.269 55.000 6.32 0.00 34.38 5.80
66 67 1.445871 ACTTTGTTATCGAACCGGGC 58.554 50.000 6.32 0.00 34.38 6.13
67 68 5.806366 AAATACTTTGTTATCGAACCGGG 57.194 39.130 6.32 0.00 34.38 5.73
122 123 9.669887 ACTCACAATAATTATAACCGTGGTAAA 57.330 29.630 0.00 0.00 0.00 2.01
141 144 5.843673 TTGGCTAATCAAACAACTCACAA 57.156 34.783 0.00 0.00 0.00 3.33
256 266 4.695928 GGGATTCGTCTTTTTCAGCTACTT 59.304 41.667 0.00 0.00 0.00 2.24
261 272 1.130561 CGGGGATTCGTCTTTTTCAGC 59.869 52.381 0.00 0.00 0.00 4.26
263 274 1.161843 GCGGGGATTCGTCTTTTTCA 58.838 50.000 0.00 0.00 0.00 2.69
297 308 3.746492 CAGAACCGGGTAAGAAAGAACAG 59.254 47.826 6.32 0.00 0.00 3.16
344 355 2.474359 CAGAGCCAAATCATCGATCGAC 59.526 50.000 22.06 4.88 0.00 4.20
345 356 2.101415 ACAGAGCCAAATCATCGATCGA 59.899 45.455 21.86 21.86 0.00 3.59
346 357 2.220363 CACAGAGCCAAATCATCGATCG 59.780 50.000 9.36 9.36 0.00 3.69
348 359 3.272574 ACACAGAGCCAAATCATCGAT 57.727 42.857 0.00 0.00 0.00 3.59
352 363 4.265073 GTCCTAACACAGAGCCAAATCAT 58.735 43.478 0.00 0.00 0.00 2.45
365 376 1.012486 CGCGGTGAAGGTCCTAACAC 61.012 60.000 16.31 16.31 0.00 3.32
374 385 1.078426 AGGGAAATCGCGGTGAAGG 60.078 57.895 6.13 0.00 0.00 3.46
396 427 6.547141 TCAAATCACAGTGAAGATCCTGTTTT 59.453 34.615 7.50 0.00 39.83 2.43
397 428 6.016777 GTCAAATCACAGTGAAGATCCTGTTT 60.017 38.462 7.50 0.00 39.83 2.83
400 431 5.243981 AGTCAAATCACAGTGAAGATCCTG 58.756 41.667 7.50 0.00 34.82 3.86
401 432 5.012458 TGAGTCAAATCACAGTGAAGATCCT 59.988 40.000 7.50 1.31 0.00 3.24
402 433 5.240891 TGAGTCAAATCACAGTGAAGATCC 58.759 41.667 7.50 3.73 0.00 3.36
403 434 6.597614 GTTGAGTCAAATCACAGTGAAGATC 58.402 40.000 7.50 6.84 0.00 2.75
404 435 5.178252 CGTTGAGTCAAATCACAGTGAAGAT 59.822 40.000 7.50 0.00 0.00 2.40
405 436 4.507756 CGTTGAGTCAAATCACAGTGAAGA 59.492 41.667 7.50 3.53 0.00 2.87
406 437 4.507756 TCGTTGAGTCAAATCACAGTGAAG 59.492 41.667 7.50 0.98 0.00 3.02
407 438 4.438148 TCGTTGAGTCAAATCACAGTGAA 58.562 39.130 7.50 0.00 0.00 3.18
438 477 1.626825 TGTGGTAACCAGCCTAACTCC 59.373 52.381 0.00 0.00 32.34 3.85
439 478 3.055385 TCATGTGGTAACCAGCCTAACTC 60.055 47.826 0.00 0.00 32.34 3.01
440 479 2.910319 TCATGTGGTAACCAGCCTAACT 59.090 45.455 0.00 0.00 32.34 2.24
441 480 3.007635 GTCATGTGGTAACCAGCCTAAC 58.992 50.000 0.00 0.00 32.34 2.34
442 481 2.640332 TGTCATGTGGTAACCAGCCTAA 59.360 45.455 0.00 0.00 32.34 2.69
443 482 2.027561 GTGTCATGTGGTAACCAGCCTA 60.028 50.000 0.00 0.00 32.34 3.93
444 483 1.064003 TGTCATGTGGTAACCAGCCT 58.936 50.000 0.00 0.00 32.34 4.58
445 484 1.165270 GTGTCATGTGGTAACCAGCC 58.835 55.000 0.00 0.00 32.34 4.85
446 485 1.890876 TGTGTCATGTGGTAACCAGC 58.109 50.000 0.00 0.00 32.34 4.85
447 486 3.189080 CACATGTGTCATGTGGTAACCAG 59.811 47.826 25.74 6.58 44.04 4.00
448 487 3.145286 CACATGTGTCATGTGGTAACCA 58.855 45.455 25.74 0.00 44.04 3.67
449 488 3.829886 CACATGTGTCATGTGGTAACC 57.170 47.619 25.74 0.00 44.04 2.85
455 494 2.162208 GGCTTACCACATGTGTCATGTG 59.838 50.000 26.20 26.20 46.49 3.21
456 495 2.224744 TGGCTTACCACATGTGTCATGT 60.225 45.455 23.79 16.29 42.67 3.21
457 496 2.435422 TGGCTTACCACATGTGTCATG 58.565 47.619 23.79 11.29 42.67 3.07
458 497 2.877097 TGGCTTACCACATGTGTCAT 57.123 45.000 23.79 11.74 42.67 3.06
469 508 6.024552 TCTGAATTGTTTGAATGGCTTACC 57.975 37.500 0.00 0.00 0.00 2.85
470 509 7.945033 TTTCTGAATTGTTTGAATGGCTTAC 57.055 32.000 0.00 0.00 0.00 2.34
471 510 8.954950 TTTTTCTGAATTGTTTGAATGGCTTA 57.045 26.923 0.00 0.00 0.00 3.09
472 511 7.862512 TTTTTCTGAATTGTTTGAATGGCTT 57.137 28.000 0.00 0.00 0.00 4.35
494 533 4.455070 AGGAACCAGCCTAACTCTTTTT 57.545 40.909 0.00 0.00 36.22 1.94
495 534 4.597940 ACTAGGAACCAGCCTAACTCTTTT 59.402 41.667 0.00 0.00 39.91 2.27
496 535 4.168883 ACTAGGAACCAGCCTAACTCTTT 58.831 43.478 0.00 0.00 39.91 2.52
497 536 3.770388 GACTAGGAACCAGCCTAACTCTT 59.230 47.826 0.00 0.00 39.91 2.85
523 562 1.202651 AGTTCACCAACGGAGTCCTTG 60.203 52.381 7.77 10.46 45.00 3.61
525 564 1.893801 CTAGTTCACCAACGGAGTCCT 59.106 52.381 7.77 0.00 45.00 3.85
557 638 1.589630 CAGCCACTGTTGCATGCAT 59.410 52.632 23.37 2.82 0.00 3.96
588 669 1.144969 TAGCTGTAGCAAACACACGC 58.855 50.000 6.65 0.00 45.16 5.34
642 724 4.160439 CAGAGGACCTGTTTGACTAGCATA 59.840 45.833 0.00 0.00 38.10 3.14
767 849 2.596875 CTGTGTTTGGCAGCAAAGC 58.403 52.632 0.00 0.00 0.00 3.51
773 855 4.737054 CTTTATTAGGCTGTGTTTGGCAG 58.263 43.478 0.00 0.00 37.06 4.85
787 869 8.993121 CAGGACCTTGTGTATATGCTTTATTAG 58.007 37.037 0.00 0.00 0.00 1.73
788 870 7.444183 GCAGGACCTTGTGTATATGCTTTATTA 59.556 37.037 0.00 0.00 30.86 0.98
789 871 6.263168 GCAGGACCTTGTGTATATGCTTTATT 59.737 38.462 0.00 0.00 30.86 1.40
790 872 5.765182 GCAGGACCTTGTGTATATGCTTTAT 59.235 40.000 0.00 0.00 30.86 1.40
791 873 5.104527 AGCAGGACCTTGTGTATATGCTTTA 60.105 40.000 0.00 0.00 36.98 1.85
792 874 3.947834 GCAGGACCTTGTGTATATGCTTT 59.052 43.478 0.00 0.00 30.86 3.51
793 875 3.200825 AGCAGGACCTTGTGTATATGCTT 59.799 43.478 0.00 0.00 36.98 3.91
794 876 2.774234 AGCAGGACCTTGTGTATATGCT 59.226 45.455 0.00 0.00 36.06 3.79
798 880 4.530553 TGAGAAAGCAGGACCTTGTGTATA 59.469 41.667 0.00 0.00 0.00 1.47
808 890 2.027745 TGACTCCATGAGAAAGCAGGAC 60.028 50.000 0.00 0.00 33.32 3.85
836 918 4.531708 CGTTGCCACGGTCAAATG 57.468 55.556 1.68 0.00 43.16 2.32
856 938 0.606401 AGCAAACGGGATGTGACCAG 60.606 55.000 0.00 0.00 0.00 4.00
860 942 0.179004 AACCAGCAAACGGGATGTGA 60.179 50.000 0.00 0.00 34.79 3.58
869 951 1.197036 GCGGACTAGAAACCAGCAAAC 59.803 52.381 0.00 0.00 0.00 2.93
870 952 1.519408 GCGGACTAGAAACCAGCAAA 58.481 50.000 0.00 0.00 0.00 3.68
876 958 1.069378 CGACACGCGGACTAGAAACC 61.069 60.000 12.47 0.00 36.03 3.27
877 959 0.386478 ACGACACGCGGACTAGAAAC 60.386 55.000 12.47 0.00 46.49 2.78
888 970 0.788391 CCAACTTTCCTACGACACGC 59.212 55.000 0.00 0.00 0.00 5.34
889 971 2.056577 GTCCAACTTTCCTACGACACG 58.943 52.381 0.00 0.00 0.00 4.49
890 972 3.315418 GAGTCCAACTTTCCTACGACAC 58.685 50.000 0.00 0.00 0.00 3.67
891 973 2.030540 CGAGTCCAACTTTCCTACGACA 60.031 50.000 0.00 0.00 0.00 4.35
892 974 2.593257 CGAGTCCAACTTTCCTACGAC 58.407 52.381 0.00 0.00 0.00 4.34
893 975 1.542915 CCGAGTCCAACTTTCCTACGA 59.457 52.381 0.00 0.00 0.00 3.43
894 976 1.271656 ACCGAGTCCAACTTTCCTACG 59.728 52.381 0.00 0.00 0.00 3.51
895 977 2.036862 ACACCGAGTCCAACTTTCCTAC 59.963 50.000 0.00 0.00 0.00 3.18
896 978 2.322658 ACACCGAGTCCAACTTTCCTA 58.677 47.619 0.00 0.00 0.00 2.94
897 979 1.129058 ACACCGAGTCCAACTTTCCT 58.871 50.000 0.00 0.00 0.00 3.36
898 980 2.612221 CCTACACCGAGTCCAACTTTCC 60.612 54.545 0.00 0.00 0.00 3.13
899 981 2.685100 CCTACACCGAGTCCAACTTTC 58.315 52.381 0.00 0.00 0.00 2.62
910 992 1.346395 ACATTTCACAGCCTACACCGA 59.654 47.619 0.00 0.00 0.00 4.69
915 997 3.003480 GACCTCACATTTCACAGCCTAC 58.997 50.000 0.00 0.00 0.00 3.18
916 998 2.637382 TGACCTCACATTTCACAGCCTA 59.363 45.455 0.00 0.00 0.00 3.93
917 999 1.421268 TGACCTCACATTTCACAGCCT 59.579 47.619 0.00 0.00 0.00 4.58
920 1002 6.580788 AGAGATATGACCTCACATTTCACAG 58.419 40.000 0.00 0.00 33.14 3.66
976 1072 1.603739 GAGCTTGGTGGTTGGGGAC 60.604 63.158 0.00 0.00 0.00 4.46
1270 1387 1.066422 TGAAGCTAGCCATCTCGCG 59.934 57.895 12.13 0.00 36.27 5.87
1680 1870 1.864176 GTTGACCCGGTACAAAGCG 59.136 57.895 11.20 0.00 46.00 4.68
1683 1873 0.463295 TTGCGTTGACCCGGTACAAA 60.463 50.000 11.20 0.00 0.00 2.83
1710 1907 0.171903 CCGGCAAAATTCTGCTCAGG 59.828 55.000 3.33 1.72 42.25 3.86
1859 2107 9.357161 CAGGAACTAGTACAGATAGTAGGATTT 57.643 37.037 0.00 0.00 38.28 2.17
1916 2884 1.851021 TTTCTTGTGTCGCCGCCATG 61.851 55.000 0.00 0.00 0.00 3.66
1973 2941 3.429080 CTCTCGAGGCCAGCTCTGC 62.429 68.421 13.56 0.00 0.00 4.26
2232 3218 1.951510 CTGCACAAGGTTGCGATGT 59.048 52.632 0.00 0.00 46.20 3.06
2316 3302 7.173032 TGTTGTTGTAGAGATACCTGTCTAGA 58.827 38.462 0.00 0.00 28.56 2.43
2326 3312 6.701340 AGCATCTGTTGTTGTTGTAGAGATA 58.299 36.000 0.00 0.00 0.00 1.98
2341 3327 1.180029 GGCCATGTCAAGCATCTGTT 58.820 50.000 0.00 0.00 35.19 3.16
2350 3339 2.235016 GTACCTTTGTGGCCATGTCAA 58.765 47.619 9.72 5.82 40.22 3.18
2364 3353 2.103263 GCCGAGGATGATCTTGTACCTT 59.897 50.000 0.00 0.00 0.00 3.50
2420 3409 3.256936 GCACGATGCACTGCTCAA 58.743 55.556 1.98 0.00 44.26 3.02
2619 3608 3.106672 GCCGAAACTATACACGTCAGAG 58.893 50.000 0.00 0.00 0.00 3.35
2634 3623 0.174845 CCAGTAGGACGATGCCGAAA 59.825 55.000 0.00 0.00 39.50 3.46
2698 3687 2.089980 CCATTTGAGCAGTGAGAAGGG 58.910 52.381 0.00 0.00 0.00 3.95
2742 3731 2.101783 TCCACCGCGTCTAGGATTTTA 58.898 47.619 4.92 0.00 0.00 1.52
2772 3761 0.314302 CGTTGTCCTCGACACTCCTT 59.686 55.000 0.00 0.00 42.60 3.36
2776 3765 0.311165 CACTCGTTGTCCTCGACACT 59.689 55.000 0.00 0.00 42.60 3.55
2867 3856 3.134127 GGACGTTCATGGCCTGCC 61.134 66.667 3.32 0.00 0.00 4.85
2887 3876 1.446966 GCCTTGCCTCGTCTGACTC 60.447 63.158 6.21 0.00 0.00 3.36
2916 3905 1.252904 ACCTGTACATGTACGGCGGT 61.253 55.000 31.35 28.47 40.27 5.68
2921 3910 0.171679 TGCGGACCTGTACATGTACG 59.828 55.000 26.04 26.04 41.72 3.67
2973 3965 2.158813 GGGGCTGTCGATGGAGAAATTA 60.159 50.000 0.00 0.00 0.00 1.40
2974 3966 1.408822 GGGGCTGTCGATGGAGAAATT 60.409 52.381 0.00 0.00 0.00 1.82
3047 4057 4.807631 TCGGCGATGAGTCCGGGA 62.808 66.667 4.99 0.00 45.31 5.14
3068 4078 1.142060 ACCTGGAACATGAAACCGACA 59.858 47.619 0.00 0.00 38.20 4.35
3072 4082 2.962421 TGGAAACCTGGAACATGAAACC 59.038 45.455 0.00 0.00 38.20 3.27
3076 4086 2.226330 CGTTGGAAACCTGGAACATGA 58.774 47.619 0.00 0.00 46.28 3.07
3077 4087 1.269448 CCGTTGGAAACCTGGAACATG 59.731 52.381 0.00 0.00 46.28 3.21
3079 4089 0.256464 ACCGTTGGAAACCTGGAACA 59.744 50.000 0.00 0.00 46.28 3.18
3080 4090 2.259266 TACCGTTGGAAACCTGGAAC 57.741 50.000 0.00 0.00 46.28 3.62
3093 4103 8.426489 TCTTGATTACTAATTGGCTATACCGTT 58.574 33.333 0.00 0.00 43.94 4.44
3104 4114 8.283291 GGCCTTACGAATCTTGATTACTAATTG 58.717 37.037 0.00 0.00 0.00 2.32
3106 4116 7.736893 AGGCCTTACGAATCTTGATTACTAAT 58.263 34.615 0.00 0.00 0.00 1.73
3109 4119 5.128827 TGAGGCCTTACGAATCTTGATTACT 59.871 40.000 6.77 0.00 0.00 2.24
3110 4120 5.357257 TGAGGCCTTACGAATCTTGATTAC 58.643 41.667 6.77 0.00 0.00 1.89
3112 4122 4.487714 TGAGGCCTTACGAATCTTGATT 57.512 40.909 6.77 0.00 0.00 2.57
3114 4124 4.487714 AATGAGGCCTTACGAATCTTGA 57.512 40.909 6.77 0.00 0.00 3.02
3115 4125 6.867662 ATTAATGAGGCCTTACGAATCTTG 57.132 37.500 6.77 0.00 0.00 3.02
3116 4126 7.881775 AAATTAATGAGGCCTTACGAATCTT 57.118 32.000 6.77 0.00 0.00 2.40
3118 4128 7.931275 AGAAAATTAATGAGGCCTTACGAATC 58.069 34.615 6.77 0.00 0.00 2.52
3119 4129 7.013369 GGAGAAAATTAATGAGGCCTTACGAAT 59.987 37.037 6.77 3.07 0.00 3.34
3120 4130 6.317893 GGAGAAAATTAATGAGGCCTTACGAA 59.682 38.462 6.77 0.25 0.00 3.85
3121 4131 5.820947 GGAGAAAATTAATGAGGCCTTACGA 59.179 40.000 6.77 0.00 0.00 3.43
3122 4132 5.823045 AGGAGAAAATTAATGAGGCCTTACG 59.177 40.000 6.77 0.00 0.00 3.18
3123 4133 7.646548 AAGGAGAAAATTAATGAGGCCTTAC 57.353 36.000 6.77 0.00 31.91 2.34
3130 4140 8.943909 ACGGTAGTAAGGAGAAAATTAATGAG 57.056 34.615 0.00 0.00 0.00 2.90
3150 4160 8.581578 TCTGCTGTCAATATCAATATAACGGTA 58.418 33.333 0.00 0.00 0.00 4.02
3151 4161 7.441836 TCTGCTGTCAATATCAATATAACGGT 58.558 34.615 0.00 0.00 0.00 4.83
3152 4162 7.889589 TCTGCTGTCAATATCAATATAACGG 57.110 36.000 0.00 0.00 0.00 4.44
3192 4202 9.241317 GAACTCGATAACGACTATTTTTCCATA 57.759 33.333 0.00 0.00 43.81 2.74
3193 4203 7.980099 AGAACTCGATAACGACTATTTTTCCAT 59.020 33.333 0.00 0.00 43.81 3.41
3194 4204 7.318141 AGAACTCGATAACGACTATTTTTCCA 58.682 34.615 0.00 0.00 43.81 3.53
3195 4205 7.752557 AGAACTCGATAACGACTATTTTTCC 57.247 36.000 0.00 0.00 43.81 3.13
3203 4213 9.875675 GTAACATAATAGAACTCGATAACGACT 57.124 33.333 0.00 0.00 43.81 4.18
3204 4214 8.825718 CGTAACATAATAGAACTCGATAACGAC 58.174 37.037 0.00 0.00 43.81 4.34
3205 4215 8.011673 CCGTAACATAATAGAACTCGATAACGA 58.988 37.037 0.00 0.00 46.56 3.85
3206 4216 7.800380 ACCGTAACATAATAGAACTCGATAACG 59.200 37.037 0.00 0.00 41.26 3.18
3210 4220 9.455847 GTTTACCGTAACATAATAGAACTCGAT 57.544 33.333 0.00 0.00 0.00 3.59
3211 4221 8.458052 TGTTTACCGTAACATAATAGAACTCGA 58.542 33.333 0.00 0.00 33.31 4.04
3212 4222 8.526681 GTGTTTACCGTAACATAATAGAACTCG 58.473 37.037 0.00 0.00 39.93 4.18
3213 4223 9.578439 AGTGTTTACCGTAACATAATAGAACTC 57.422 33.333 0.00 0.00 39.93 3.01
3229 4239 9.539139 CGTAGTCAGATTATATAGTGTTTACCG 57.461 37.037 0.00 0.00 0.00 4.02
3230 4240 9.339492 GCGTAGTCAGATTATATAGTGTTTACC 57.661 37.037 0.00 0.00 0.00 2.85
3233 4243 9.069082 AGAGCGTAGTCAGATTATATAGTGTTT 57.931 33.333 0.00 0.00 0.00 2.83
3234 4244 8.624367 AGAGCGTAGTCAGATTATATAGTGTT 57.376 34.615 0.00 0.00 0.00 3.32
3235 4245 7.334921 GGAGAGCGTAGTCAGATTATATAGTGT 59.665 40.741 0.00 0.00 0.00 3.55
3236 4246 7.464844 CGGAGAGCGTAGTCAGATTATATAGTG 60.465 44.444 0.00 0.00 0.00 2.74
3237 4247 6.535865 CGGAGAGCGTAGTCAGATTATATAGT 59.464 42.308 0.00 0.00 0.00 2.12
3238 4248 6.535865 ACGGAGAGCGTAGTCAGATTATATAG 59.464 42.308 0.00 0.00 0.00 1.31
3239 4249 6.404708 ACGGAGAGCGTAGTCAGATTATATA 58.595 40.000 0.00 0.00 0.00 0.86
3240 4250 5.247084 ACGGAGAGCGTAGTCAGATTATAT 58.753 41.667 0.00 0.00 0.00 0.86
3241 4251 4.639334 ACGGAGAGCGTAGTCAGATTATA 58.361 43.478 0.00 0.00 0.00 0.98
3242 4252 3.478509 ACGGAGAGCGTAGTCAGATTAT 58.521 45.455 0.00 0.00 0.00 1.28
3243 4253 2.915349 ACGGAGAGCGTAGTCAGATTA 58.085 47.619 0.00 0.00 0.00 1.75
3244 4254 1.752683 ACGGAGAGCGTAGTCAGATT 58.247 50.000 0.00 0.00 0.00 2.40
3245 4255 2.616634 TACGGAGAGCGTAGTCAGAT 57.383 50.000 0.00 0.00 0.00 2.90
3246 4256 2.391616 TTACGGAGAGCGTAGTCAGA 57.608 50.000 0.00 0.00 0.00 3.27
3247 4257 3.694535 AATTACGGAGAGCGTAGTCAG 57.305 47.619 0.00 0.00 0.00 3.51
3248 4258 4.194640 ACTAATTACGGAGAGCGTAGTCA 58.805 43.478 0.00 0.00 0.00 3.41
3249 4259 4.809815 ACTAATTACGGAGAGCGTAGTC 57.190 45.455 0.00 0.00 0.00 2.59
3250 4260 4.754114 CCTACTAATTACGGAGAGCGTAGT 59.246 45.833 0.00 0.00 0.00 2.73
3251 4261 4.993584 TCCTACTAATTACGGAGAGCGTAG 59.006 45.833 0.00 0.00 0.00 3.51
3252 4262 4.960938 TCCTACTAATTACGGAGAGCGTA 58.039 43.478 0.00 0.00 0.00 4.42
3253 4263 3.813443 TCCTACTAATTACGGAGAGCGT 58.187 45.455 0.00 0.00 0.00 5.07
3254 4264 6.315642 TCATATCCTACTAATTACGGAGAGCG 59.684 42.308 0.00 0.00 0.00 5.03
3255 4265 7.120873 TGTCATATCCTACTAATTACGGAGAGC 59.879 40.741 0.00 0.00 0.00 4.09
3256 4266 8.452534 GTGTCATATCCTACTAATTACGGAGAG 58.547 40.741 0.00 0.00 0.00 3.20
3257 4267 7.940688 TGTGTCATATCCTACTAATTACGGAGA 59.059 37.037 0.00 0.00 0.00 3.71
3258 4268 8.021973 GTGTGTCATATCCTACTAATTACGGAG 58.978 40.741 0.00 0.00 0.00 4.63
3259 4269 7.308169 CGTGTGTCATATCCTACTAATTACGGA 60.308 40.741 0.00 0.00 0.00 4.69
3260 4270 6.800408 CGTGTGTCATATCCTACTAATTACGG 59.200 42.308 0.00 0.00 0.00 4.02
3261 4271 7.358066 ACGTGTGTCATATCCTACTAATTACG 58.642 38.462 0.00 0.00 0.00 3.18
3262 4272 8.725212 GACGTGTGTCATATCCTACTAATTAC 57.275 38.462 0.00 0.00 44.82 1.89
3292 4302 3.797145 TATTGTCGGGCGCTCGGTAAC 62.797 57.143 31.95 21.51 0.00 2.50
3293 4303 1.665264 TATTGTCGGGCGCTCGGTAA 61.665 55.000 31.95 24.37 0.00 2.85
3294 4304 1.665264 TTATTGTCGGGCGCTCGGTA 61.665 55.000 31.95 16.69 0.00 4.02
3295 4305 2.510064 TTTATTGTCGGGCGCTCGGT 62.510 55.000 31.95 15.91 0.00 4.69
3296 4306 1.363145 TTTTATTGTCGGGCGCTCGG 61.363 55.000 31.95 11.70 0.00 4.63
3297 4307 0.655733 ATTTTATTGTCGGGCGCTCG 59.344 50.000 26.97 26.97 0.00 5.03
3298 4308 2.870411 AGTATTTTATTGTCGGGCGCTC 59.130 45.455 7.64 0.06 0.00 5.03
3299 4309 2.870411 GAGTATTTTATTGTCGGGCGCT 59.130 45.455 7.64 0.00 0.00 5.92
3300 4310 2.610374 TGAGTATTTTATTGTCGGGCGC 59.390 45.455 0.00 0.00 0.00 6.53
3301 4311 3.303132 GCTGAGTATTTTATTGTCGGGCG 60.303 47.826 0.00 0.00 0.00 6.13
3302 4312 3.625764 TGCTGAGTATTTTATTGTCGGGC 59.374 43.478 0.00 0.00 0.00 6.13
3303 4313 5.811399 TTGCTGAGTATTTTATTGTCGGG 57.189 39.130 0.00 0.00 0.00 5.14
3304 4314 6.607689 TGTTTGCTGAGTATTTTATTGTCGG 58.392 36.000 0.00 0.00 0.00 4.79
3305 4315 8.500837 TTTGTTTGCTGAGTATTTTATTGTCG 57.499 30.769 0.00 0.00 0.00 4.35
3306 4316 9.677567 TCTTTGTTTGCTGAGTATTTTATTGTC 57.322 29.630 0.00 0.00 0.00 3.18
3312 4322 9.087424 GAGTTTTCTTTGTTTGCTGAGTATTTT 57.913 29.630 0.00 0.00 0.00 1.82
3313 4323 7.432252 CGAGTTTTCTTTGTTTGCTGAGTATTT 59.568 33.333 0.00 0.00 0.00 1.40
3314 4324 6.912591 CGAGTTTTCTTTGTTTGCTGAGTATT 59.087 34.615 0.00 0.00 0.00 1.89
3315 4325 6.430451 CGAGTTTTCTTTGTTTGCTGAGTAT 58.570 36.000 0.00 0.00 0.00 2.12
3316 4326 5.220777 CCGAGTTTTCTTTGTTTGCTGAGTA 60.221 40.000 0.00 0.00 0.00 2.59
3317 4327 4.438744 CCGAGTTTTCTTTGTTTGCTGAGT 60.439 41.667 0.00 0.00 0.00 3.41
3318 4328 4.037690 CCGAGTTTTCTTTGTTTGCTGAG 58.962 43.478 0.00 0.00 0.00 3.35
3319 4329 3.733684 GCCGAGTTTTCTTTGTTTGCTGA 60.734 43.478 0.00 0.00 0.00 4.26
3320 4330 2.535574 GCCGAGTTTTCTTTGTTTGCTG 59.464 45.455 0.00 0.00 0.00 4.41
3321 4331 2.427095 AGCCGAGTTTTCTTTGTTTGCT 59.573 40.909 0.00 0.00 0.00 3.91
3322 4332 2.809446 AGCCGAGTTTTCTTTGTTTGC 58.191 42.857 0.00 0.00 0.00 3.68
3323 4333 5.402270 CCATAAGCCGAGTTTTCTTTGTTTG 59.598 40.000 0.00 0.00 0.00 2.93
3324 4334 5.508994 CCCATAAGCCGAGTTTTCTTTGTTT 60.509 40.000 0.00 0.00 0.00 2.83
3325 4335 4.022329 CCCATAAGCCGAGTTTTCTTTGTT 60.022 41.667 0.00 0.00 0.00 2.83
3326 4336 3.506067 CCCATAAGCCGAGTTTTCTTTGT 59.494 43.478 0.00 0.00 0.00 2.83
3327 4337 3.756434 TCCCATAAGCCGAGTTTTCTTTG 59.244 43.478 0.00 0.00 0.00 2.77
3328 4338 3.756963 GTCCCATAAGCCGAGTTTTCTTT 59.243 43.478 0.00 0.00 0.00 2.52
3329 4339 3.344515 GTCCCATAAGCCGAGTTTTCTT 58.655 45.455 0.00 0.00 0.00 2.52
3330 4340 2.677037 CGTCCCATAAGCCGAGTTTTCT 60.677 50.000 0.00 0.00 0.00 2.52
3331 4341 1.664151 CGTCCCATAAGCCGAGTTTTC 59.336 52.381 0.00 0.00 0.00 2.29
3332 4342 1.002773 ACGTCCCATAAGCCGAGTTTT 59.997 47.619 0.00 0.00 0.00 2.43
3333 4343 0.611714 ACGTCCCATAAGCCGAGTTT 59.388 50.000 0.00 0.00 0.00 2.66
3334 4344 1.477553 TACGTCCCATAAGCCGAGTT 58.522 50.000 0.00 0.00 0.00 3.01
3335 4345 1.340248 CATACGTCCCATAAGCCGAGT 59.660 52.381 0.00 0.00 0.00 4.18
3336 4346 1.935300 GCATACGTCCCATAAGCCGAG 60.935 57.143 0.00 0.00 0.00 4.63
3337 4347 0.032952 GCATACGTCCCATAAGCCGA 59.967 55.000 0.00 0.00 0.00 5.54
3338 4348 0.033504 AGCATACGTCCCATAAGCCG 59.966 55.000 0.00 0.00 0.00 5.52
3339 4349 1.070134 TCAGCATACGTCCCATAAGCC 59.930 52.381 0.00 0.00 0.00 4.35
3340 4350 2.035961 TCTCAGCATACGTCCCATAAGC 59.964 50.000 0.00 0.00 0.00 3.09
3341 4351 3.858877 GCTCTCAGCATACGTCCCATAAG 60.859 52.174 0.00 0.00 41.89 1.73
3342 4352 2.035961 GCTCTCAGCATACGTCCCATAA 59.964 50.000 0.00 0.00 41.89 1.90
3343 4353 1.613925 GCTCTCAGCATACGTCCCATA 59.386 52.381 0.00 0.00 41.89 2.74
3344 4354 0.390860 GCTCTCAGCATACGTCCCAT 59.609 55.000 0.00 0.00 41.89 4.00
3345 4355 1.676678 GGCTCTCAGCATACGTCCCA 61.677 60.000 0.00 0.00 44.75 4.37
3346 4356 1.068250 GGCTCTCAGCATACGTCCC 59.932 63.158 0.00 0.00 44.75 4.46
3347 4357 1.299468 CGGCTCTCAGCATACGTCC 60.299 63.158 0.00 0.00 44.75 4.79
3348 4358 1.946650 GCGGCTCTCAGCATACGTC 60.947 63.158 0.00 0.00 44.75 4.34
3349 4359 2.105128 GCGGCTCTCAGCATACGT 59.895 61.111 0.00 0.00 44.75 3.57
3350 4360 2.104928 TGCGGCTCTCAGCATACG 59.895 61.111 0.00 0.00 44.75 3.06
3351 4361 1.884926 GGTGCGGCTCTCAGCATAC 60.885 63.158 0.00 0.00 44.75 2.39
3352 4362 0.755327 TAGGTGCGGCTCTCAGCATA 60.755 55.000 0.00 0.00 44.75 3.14
3353 4363 2.060383 TAGGTGCGGCTCTCAGCAT 61.060 57.895 0.00 0.00 44.75 3.79
3354 4364 2.679996 TAGGTGCGGCTCTCAGCA 60.680 61.111 0.00 0.00 44.75 4.41
3355 4365 2.202810 GTAGGTGCGGCTCTCAGC 60.203 66.667 0.00 0.00 41.46 4.26
3356 4366 2.103143 CGTAGGTGCGGCTCTCAG 59.897 66.667 0.00 0.00 0.00 3.35
3369 4379 4.814294 GCTGACCGGGTGCCGTAG 62.814 72.222 3.30 0.00 46.80 3.51
3373 4383 3.365265 CTTTGCTGACCGGGTGCC 61.365 66.667 3.30 0.00 0.00 5.01
3374 4384 2.281484 TCTTTGCTGACCGGGTGC 60.281 61.111 3.30 2.92 0.00 5.01
3375 4385 1.672356 CCTCTTTGCTGACCGGGTG 60.672 63.158 3.30 0.00 0.00 4.61
3376 4386 2.147387 ACCTCTTTGCTGACCGGGT 61.147 57.895 6.32 0.00 0.00 5.28
3377 4387 1.672356 CACCTCTTTGCTGACCGGG 60.672 63.158 6.32 0.00 0.00 5.73
3378 4388 0.951040 GACACCTCTTTGCTGACCGG 60.951 60.000 0.00 0.00 0.00 5.28
3379 4389 0.249868 TGACACCTCTTTGCTGACCG 60.250 55.000 0.00 0.00 0.00 4.79
3380 4390 1.808945 CATGACACCTCTTTGCTGACC 59.191 52.381 0.00 0.00 0.00 4.02
3381 4391 2.225019 CACATGACACCTCTTTGCTGAC 59.775 50.000 0.00 0.00 0.00 3.51
3382 4392 2.497138 CACATGACACCTCTTTGCTGA 58.503 47.619 0.00 0.00 0.00 4.26
3383 4393 1.538512 CCACATGACACCTCTTTGCTG 59.461 52.381 0.00 0.00 0.00 4.41
3384 4394 1.901591 CCACATGACACCTCTTTGCT 58.098 50.000 0.00 0.00 0.00 3.91
3385 4395 0.242017 GCCACATGACACCTCTTTGC 59.758 55.000 0.00 0.00 0.00 3.68
3386 4396 1.267806 GTGCCACATGACACCTCTTTG 59.732 52.381 0.00 0.00 0.00 2.77
3387 4397 1.609208 GTGCCACATGACACCTCTTT 58.391 50.000 0.00 0.00 0.00 2.52
3388 4398 3.329300 GTGCCACATGACACCTCTT 57.671 52.632 0.00 0.00 0.00 2.85
3409 4419 1.134907 GGAGCCATCAACTGCAAATGG 60.135 52.381 11.02 11.02 42.38 3.16
3410 4420 1.546923 TGGAGCCATCAACTGCAAATG 59.453 47.619 0.00 0.00 32.06 2.32
3411 4421 1.927487 TGGAGCCATCAACTGCAAAT 58.073 45.000 0.00 0.00 32.06 2.32
3412 4422 1.546923 CATGGAGCCATCAACTGCAAA 59.453 47.619 0.00 0.00 39.05 3.68
3413 4423 1.179152 CATGGAGCCATCAACTGCAA 58.821 50.000 0.00 0.00 39.05 4.08
3414 4424 0.038599 ACATGGAGCCATCAACTGCA 59.961 50.000 0.00 0.00 39.94 4.41
3415 4425 0.454600 CACATGGAGCCATCAACTGC 59.545 55.000 0.00 0.00 33.90 4.40
3416 4426 1.100510 CCACATGGAGCCATCAACTG 58.899 55.000 0.00 0.00 37.39 3.16
3417 4427 0.994247 TCCACATGGAGCCATCAACT 59.006 50.000 0.00 0.00 39.78 3.16
3418 4428 1.098050 GTCCACATGGAGCCATCAAC 58.902 55.000 0.00 0.00 46.49 3.18
3419 4429 0.392863 CGTCCACATGGAGCCATCAA 60.393 55.000 0.00 0.00 46.49 2.57
3420 4430 1.221566 CGTCCACATGGAGCCATCA 59.778 57.895 0.00 0.00 46.49 3.07
3421 4431 1.524621 CCGTCCACATGGAGCCATC 60.525 63.158 0.00 0.00 46.49 3.51
3422 4432 2.591753 CCGTCCACATGGAGCCAT 59.408 61.111 0.00 0.00 46.49 4.40
3423 4433 3.716195 CCCGTCCACATGGAGCCA 61.716 66.667 0.00 0.00 46.49 4.75
3425 4435 3.918253 TTGCCCGTCCACATGGAGC 62.918 63.158 0.00 2.22 46.49 4.70
3426 4436 2.040544 GTTGCCCGTCCACATGGAG 61.041 63.158 0.00 0.00 46.49 3.86
3427 4437 2.033448 GTTGCCCGTCCACATGGA 59.967 61.111 0.00 0.00 43.08 3.41
3428 4438 3.430862 CGTTGCCCGTCCACATGG 61.431 66.667 0.00 0.00 0.00 3.66
3437 4447 0.387622 TTCTCTACGAACGTTGCCCG 60.388 55.000 5.00 5.84 44.03 6.13
3438 4448 1.066136 GTTCTCTACGAACGTTGCCC 58.934 55.000 5.00 0.00 42.28 5.36
3446 4456 8.216423 AGTACTAGATATTGGGTTCTCTACGAA 58.784 37.037 0.00 0.00 0.00 3.85
3447 4457 7.743749 AGTACTAGATATTGGGTTCTCTACGA 58.256 38.462 0.00 0.00 0.00 3.43
3448 4458 7.148606 CGAGTACTAGATATTGGGTTCTCTACG 60.149 44.444 0.00 0.00 0.00 3.51
3449 4459 7.119553 CCGAGTACTAGATATTGGGTTCTCTAC 59.880 44.444 4.34 0.00 0.00 2.59
3450 4460 7.166851 CCGAGTACTAGATATTGGGTTCTCTA 58.833 42.308 4.34 0.00 0.00 2.43
3451 4461 6.005198 CCGAGTACTAGATATTGGGTTCTCT 58.995 44.000 4.34 0.00 0.00 3.10
3452 4462 5.335819 GCCGAGTACTAGATATTGGGTTCTC 60.336 48.000 4.34 0.00 0.00 2.87
3453 4463 4.523558 GCCGAGTACTAGATATTGGGTTCT 59.476 45.833 4.34 0.00 0.00 3.01
3454 4464 4.280174 TGCCGAGTACTAGATATTGGGTTC 59.720 45.833 4.34 0.00 0.00 3.62
3455 4465 4.220724 TGCCGAGTACTAGATATTGGGTT 58.779 43.478 4.34 0.00 0.00 4.11
3456 4466 3.840991 TGCCGAGTACTAGATATTGGGT 58.159 45.455 4.34 0.00 0.00 4.51
3457 4467 4.866508 TTGCCGAGTACTAGATATTGGG 57.133 45.455 4.34 0.00 0.00 4.12
3458 4468 5.844004 AGTTTGCCGAGTACTAGATATTGG 58.156 41.667 4.34 0.00 0.00 3.16
3459 4469 7.062371 GCATAGTTTGCCGAGTACTAGATATTG 59.938 40.741 4.34 0.00 46.15 1.90
3460 4470 7.091443 GCATAGTTTGCCGAGTACTAGATATT 58.909 38.462 4.34 0.00 46.15 1.28
3461 4471 6.622549 GCATAGTTTGCCGAGTACTAGATAT 58.377 40.000 4.34 0.00 46.15 1.63
3462 4472 6.010294 GCATAGTTTGCCGAGTACTAGATA 57.990 41.667 4.34 0.00 46.15 1.98
3463 4473 4.872664 GCATAGTTTGCCGAGTACTAGAT 58.127 43.478 4.34 0.00 46.15 1.98
3464 4474 4.303086 GCATAGTTTGCCGAGTACTAGA 57.697 45.455 4.34 0.00 46.15 2.43
3476 4486 6.449635 TGGGCTTAAATAGTGCATAGTTTG 57.550 37.500 0.00 0.00 0.00 2.93
3477 4487 6.265422 GGATGGGCTTAAATAGTGCATAGTTT 59.735 38.462 0.00 0.00 0.00 2.66
3478 4488 5.770162 GGATGGGCTTAAATAGTGCATAGTT 59.230 40.000 0.00 0.00 0.00 2.24
3479 4489 5.073691 AGGATGGGCTTAAATAGTGCATAGT 59.926 40.000 0.00 0.00 0.00 2.12
3480 4490 5.564550 AGGATGGGCTTAAATAGTGCATAG 58.435 41.667 0.00 0.00 0.00 2.23
3481 4491 5.514834 GGAGGATGGGCTTAAATAGTGCATA 60.515 44.000 0.00 0.00 0.00 3.14
3482 4492 4.401925 GAGGATGGGCTTAAATAGTGCAT 58.598 43.478 0.00 0.00 0.00 3.96
3483 4493 3.435026 GGAGGATGGGCTTAAATAGTGCA 60.435 47.826 0.00 0.00 0.00 4.57
3484 4494 3.149981 GGAGGATGGGCTTAAATAGTGC 58.850 50.000 0.00 0.00 0.00 4.40
3485 4495 3.403038 CGGAGGATGGGCTTAAATAGTG 58.597 50.000 0.00 0.00 0.00 2.74
3486 4496 2.224548 GCGGAGGATGGGCTTAAATAGT 60.225 50.000 0.00 0.00 0.00 2.12
3487 4497 2.427506 GCGGAGGATGGGCTTAAATAG 58.572 52.381 0.00 0.00 0.00 1.73
3488 4498 1.073284 GGCGGAGGATGGGCTTAAATA 59.927 52.381 0.00 0.00 0.00 1.40
3489 4499 0.178990 GGCGGAGGATGGGCTTAAAT 60.179 55.000 0.00 0.00 0.00 1.40
3490 4500 1.226262 GGCGGAGGATGGGCTTAAA 59.774 57.895 0.00 0.00 0.00 1.52
3491 4501 1.279025 AAGGCGGAGGATGGGCTTAA 61.279 55.000 0.00 0.00 45.81 1.85
3492 4502 1.692749 AAGGCGGAGGATGGGCTTA 60.693 57.895 0.00 0.00 45.81 3.09
3493 4503 3.017581 AAGGCGGAGGATGGGCTT 61.018 61.111 0.00 0.00 43.29 4.35
3494 4504 3.801997 CAAGGCGGAGGATGGGCT 61.802 66.667 0.00 0.00 41.27 5.19
3496 4506 3.426309 ATGCAAGGCGGAGGATGGG 62.426 63.158 0.00 0.00 0.00 4.00
3497 4507 1.895707 GATGCAAGGCGGAGGATGG 60.896 63.158 0.00 0.00 0.00 3.51
3498 4508 1.895707 GGATGCAAGGCGGAGGATG 60.896 63.158 0.00 0.00 0.00 3.51
3499 4509 1.925285 TTGGATGCAAGGCGGAGGAT 61.925 55.000 0.00 0.00 0.00 3.24
3500 4510 2.135903 TTTGGATGCAAGGCGGAGGA 62.136 55.000 0.00 0.00 0.00 3.71
3501 4511 1.678635 TTTGGATGCAAGGCGGAGG 60.679 57.895 0.00 0.00 0.00 4.30
3502 4512 1.508088 GTTTGGATGCAAGGCGGAG 59.492 57.895 0.00 0.00 0.00 4.63
3503 4513 1.976474 GGTTTGGATGCAAGGCGGA 60.976 57.895 0.00 0.00 0.00 5.54
3504 4514 0.679640 TAGGTTTGGATGCAAGGCGG 60.680 55.000 0.00 0.00 0.00 6.13
3505 4515 0.734889 CTAGGTTTGGATGCAAGGCG 59.265 55.000 0.00 0.00 0.00 5.52
3506 4516 0.457443 GCTAGGTTTGGATGCAAGGC 59.543 55.000 0.00 0.00 0.00 4.35
3507 4517 1.747355 CAGCTAGGTTTGGATGCAAGG 59.253 52.381 0.00 0.00 0.00 3.61
3508 4518 2.421424 GACAGCTAGGTTTGGATGCAAG 59.579 50.000 0.00 0.00 0.00 4.01
3509 4519 2.436417 GACAGCTAGGTTTGGATGCAA 58.564 47.619 0.00 0.00 0.00 4.08
3510 4520 1.675714 CGACAGCTAGGTTTGGATGCA 60.676 52.381 0.00 0.00 0.00 3.96
3511 4521 1.009829 CGACAGCTAGGTTTGGATGC 58.990 55.000 0.00 0.00 0.00 3.91
3512 4522 1.656652 CCGACAGCTAGGTTTGGATG 58.343 55.000 0.00 0.00 0.00 3.51
3513 4523 0.107654 GCCGACAGCTAGGTTTGGAT 60.108 55.000 12.09 0.00 38.99 3.41
3514 4524 1.295423 GCCGACAGCTAGGTTTGGA 59.705 57.895 12.09 0.00 38.99 3.53
3515 4525 1.745489 GGCCGACAGCTAGGTTTGG 60.745 63.158 0.00 0.00 43.05 3.28
3516 4526 2.100631 CGGCCGACAGCTAGGTTTG 61.101 63.158 24.07 0.00 43.05 2.93
3517 4527 2.264794 CGGCCGACAGCTAGGTTT 59.735 61.111 24.07 0.00 43.05 3.27
3518 4528 4.452733 GCGGCCGACAGCTAGGTT 62.453 66.667 33.48 0.00 43.05 3.50
3541 4551 0.392461 TAGGGTTTGACAGCATCGGC 60.392 55.000 0.00 0.00 41.61 5.54
3542 4552 2.332063 ATAGGGTTTGACAGCATCGG 57.668 50.000 0.00 0.00 0.00 4.18
3543 4553 2.285220 CGAATAGGGTTTGACAGCATCG 59.715 50.000 0.00 0.00 0.00 3.84
3544 4554 2.614057 CCGAATAGGGTTTGACAGCATC 59.386 50.000 0.00 0.00 35.97 3.91
3545 4555 2.643551 CCGAATAGGGTTTGACAGCAT 58.356 47.619 0.00 0.00 35.97 3.79
3546 4556 1.948611 GCCGAATAGGGTTTGACAGCA 60.949 52.381 0.00 0.00 41.48 4.41
3547 4557 0.733150 GCCGAATAGGGTTTGACAGC 59.267 55.000 0.00 0.00 41.48 4.40
3548 4558 1.006832 CGCCGAATAGGGTTTGACAG 58.993 55.000 0.00 0.00 41.48 3.51
3549 4559 1.022451 GCGCCGAATAGGGTTTGACA 61.022 55.000 0.00 0.00 41.48 3.58
3686 4702 1.729838 GAGCGCACGAGTTCGAGTT 60.730 57.895 11.47 0.00 43.02 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.