Multiple sequence alignment - TraesCS7B01G414400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G414400 chr7B 100.000 5354 0 0 1 5354 682367938 682373291 0.000000e+00 9888.0
1 TraesCS7B01G414400 chr7B 83.624 1032 156 11 3416 4441 613227687 613226663 0.000000e+00 957.0
2 TraesCS7B01G414400 chr7B 80.526 1027 193 7 3407 4429 700194229 700195252 0.000000e+00 782.0
3 TraesCS7B01G414400 chr7B 84.551 712 89 11 904 1604 602549295 602549996 0.000000e+00 686.0
4 TraesCS7B01G414400 chr7B 84.768 302 40 6 155 453 725171446 725171744 1.130000e-76 298.0
5 TraesCS7B01G414400 chr7B 85.437 206 22 6 532 729 725171910 725172115 1.950000e-49 207.0
6 TraesCS7B01G414400 chr7B 90.323 93 9 0 4688 4780 725172232 725172324 7.280000e-24 122.0
7 TraesCS7B01G414400 chr7B 100.000 29 0 0 876 904 150186926 150186954 3.000000e-03 54.7
8 TraesCS7B01G414400 chr4B 88.840 1828 171 13 906 2710 453776430 453778247 0.000000e+00 2215.0
9 TraesCS7B01G414400 chr4B 80.464 1034 186 13 3403 4429 449521905 449520881 0.000000e+00 776.0
10 TraesCS7B01G414400 chr7D 84.061 2246 333 18 2196 4434 204006669 204004442 0.000000e+00 2141.0
11 TraesCS7B01G414400 chr7D 92.868 645 46 0 4710 5354 625616865 625616221 0.000000e+00 937.0
12 TraesCS7B01G414400 chr7D 78.955 651 110 16 1449 2076 204007345 204006699 8.290000e-113 418.0
13 TraesCS7B01G414400 chr7D 77.273 550 104 15 4808 5354 1998611 1999142 2.420000e-78 303.0
14 TraesCS7B01G414400 chr7D 100.000 33 0 0 83 115 625619580 625619548 1.610000e-05 62.1
15 TraesCS7B01G414400 chr7A 95.556 1125 46 3 3376 4497 25341033 25339910 0.000000e+00 1797.0
16 TraesCS7B01G414400 chr7A 86.328 1163 159 0 2196 3358 6785346 6784184 0.000000e+00 1267.0
17 TraesCS7B01G414400 chr7A 88.935 479 30 12 98 558 721217979 721217506 2.160000e-158 569.0
18 TraesCS7B01G414400 chr7A 78.648 651 111 20 1449 2076 6786021 6785376 1.800000e-109 407.0
19 TraesCS7B01G414400 chr7A 77.431 545 106 12 4811 5354 1692185 1691657 5.210000e-80 309.0
20 TraesCS7B01G414400 chr7A 91.358 81 3 2 2 78 721218784 721218704 2.040000e-19 108.0
21 TraesCS7B01G414400 chr4D 93.910 936 56 1 2251 3186 459203587 459204521 0.000000e+00 1411.0
22 TraesCS7B01G414400 chr4D 92.744 758 53 2 3743 4499 459225162 459225918 0.000000e+00 1094.0
23 TraesCS7B01G414400 chr4D 89.831 590 35 10 3182 3747 459217487 459218075 0.000000e+00 734.0
24 TraesCS7B01G414400 chr2B 96.198 789 22 2 906 1686 707471832 707472620 0.000000e+00 1284.0
25 TraesCS7B01G414400 chr2D 86.922 1124 147 0 2235 3358 26452417 26451294 0.000000e+00 1262.0
26 TraesCS7B01G414400 chr2D 84.570 1011 147 9 3429 4434 26450977 26449971 0.000000e+00 994.0
27 TraesCS7B01G414400 chr2D 78.495 651 113 15 1449 2076 26453123 26452477 8.350000e-108 401.0
28 TraesCS7B01G414400 chr6A 86.794 1098 145 0 2196 3293 60032490 60033587 0.000000e+00 1225.0
29 TraesCS7B01G414400 chr6A 84.768 1011 144 10 3429 4434 60033881 60034886 0.000000e+00 1005.0
30 TraesCS7B01G414400 chr6A 78.187 651 115 19 1449 2076 60031814 60032460 1.810000e-104 390.0
31 TraesCS7B01G414400 chr2A 84.966 1164 159 10 2196 3357 72683948 72685097 0.000000e+00 1166.0
32 TraesCS7B01G414400 chr2A 83.861 1010 155 8 3429 4434 72685524 72686529 0.000000e+00 955.0
33 TraesCS7B01G414400 chr2A 85.311 708 86 9 906 1604 744290459 744291157 0.000000e+00 715.0
34 TraesCS7B01G414400 chr2A 81.275 251 38 4 1449 1691 72632532 72632781 1.520000e-45 195.0
35 TraesCS7B01G414400 chr2A 100.000 28 0 0 878 905 41622746 41622773 1.000000e-02 52.8
36 TraesCS7B01G414400 chr1D 80.601 1031 193 7 3403 4429 474364486 474363459 0.000000e+00 789.0
37 TraesCS7B01G414400 chr3B 88.199 322 38 0 2661 2982 725455659 725455980 8.410000e-103 385.0
38 TraesCS7B01G414400 chr3B 79.091 220 44 2 4828 5046 136448966 136449184 3.340000e-32 150.0
39 TraesCS7B01G414400 chr4A 81.876 469 67 11 1444 1900 449981249 449980787 3.910000e-101 379.0
40 TraesCS7B01G414400 chr3A 80.631 222 37 5 4828 5046 102623526 102623744 3.320000e-37 167.0
41 TraesCS7B01G414400 chr3D 80.000 220 42 2 4828 5046 86341514 86341732 1.540000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G414400 chr7B 682367938 682373291 5353 False 9888.000000 9888 100.000000 1 5354 1 chr7B.!!$F3 5353
1 TraesCS7B01G414400 chr7B 613226663 613227687 1024 True 957.000000 957 83.624000 3416 4441 1 chr7B.!!$R1 1025
2 TraesCS7B01G414400 chr7B 700194229 700195252 1023 False 782.000000 782 80.526000 3407 4429 1 chr7B.!!$F4 1022
3 TraesCS7B01G414400 chr7B 602549295 602549996 701 False 686.000000 686 84.551000 904 1604 1 chr7B.!!$F2 700
4 TraesCS7B01G414400 chr7B 725171446 725172324 878 False 209.000000 298 86.842667 155 4780 3 chr7B.!!$F5 4625
5 TraesCS7B01G414400 chr4B 453776430 453778247 1817 False 2215.000000 2215 88.840000 906 2710 1 chr4B.!!$F1 1804
6 TraesCS7B01G414400 chr4B 449520881 449521905 1024 True 776.000000 776 80.464000 3403 4429 1 chr4B.!!$R1 1026
7 TraesCS7B01G414400 chr7D 204004442 204007345 2903 True 1279.500000 2141 81.508000 1449 4434 2 chr7D.!!$R1 2985
8 TraesCS7B01G414400 chr7D 625616221 625619580 3359 True 499.550000 937 96.434000 83 5354 2 chr7D.!!$R2 5271
9 TraesCS7B01G414400 chr7D 1998611 1999142 531 False 303.000000 303 77.273000 4808 5354 1 chr7D.!!$F1 546
10 TraesCS7B01G414400 chr7A 25339910 25341033 1123 True 1797.000000 1797 95.556000 3376 4497 1 chr7A.!!$R2 1121
11 TraesCS7B01G414400 chr7A 6784184 6786021 1837 True 837.000000 1267 82.488000 1449 3358 2 chr7A.!!$R3 1909
12 TraesCS7B01G414400 chr7A 721217506 721218784 1278 True 338.500000 569 90.146500 2 558 2 chr7A.!!$R4 556
13 TraesCS7B01G414400 chr7A 1691657 1692185 528 True 309.000000 309 77.431000 4811 5354 1 chr7A.!!$R1 543
14 TraesCS7B01G414400 chr4D 459203587 459204521 934 False 1411.000000 1411 93.910000 2251 3186 1 chr4D.!!$F1 935
15 TraesCS7B01G414400 chr4D 459225162 459225918 756 False 1094.000000 1094 92.744000 3743 4499 1 chr4D.!!$F3 756
16 TraesCS7B01G414400 chr4D 459217487 459218075 588 False 734.000000 734 89.831000 3182 3747 1 chr4D.!!$F2 565
17 TraesCS7B01G414400 chr2B 707471832 707472620 788 False 1284.000000 1284 96.198000 906 1686 1 chr2B.!!$F1 780
18 TraesCS7B01G414400 chr2D 26449971 26453123 3152 True 885.666667 1262 83.329000 1449 4434 3 chr2D.!!$R1 2985
19 TraesCS7B01G414400 chr6A 60031814 60034886 3072 False 873.333333 1225 83.249667 1449 4434 3 chr6A.!!$F1 2985
20 TraesCS7B01G414400 chr2A 72683948 72686529 2581 False 1060.500000 1166 84.413500 2196 4434 2 chr2A.!!$F4 2238
21 TraesCS7B01G414400 chr2A 744290459 744291157 698 False 715.000000 715 85.311000 906 1604 1 chr2A.!!$F3 698
22 TraesCS7B01G414400 chr1D 474363459 474364486 1027 True 789.000000 789 80.601000 3403 4429 1 chr1D.!!$R1 1026

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 3641 0.035739 GGGTTGTAGCAAACGAGGGA 59.964 55.0 0.00 0.0 0.00 4.20 F
820 3668 0.104487 TAACACAACCGTTCGCTCCA 59.896 50.0 0.00 0.0 0.00 3.86 F
891 3739 0.109873 ACGAGTTTAGTGACGCGAGG 60.110 55.0 15.93 0.0 43.99 4.63 F
892 3740 0.167470 CGAGTTTAGTGACGCGAGGA 59.833 55.0 15.93 0.0 43.99 3.71 F
899 3747 0.172803 AGTGACGCGAGGATGGTAAC 59.827 55.0 15.93 0.0 0.00 2.50 F
900 3748 0.172803 GTGACGCGAGGATGGTAACT 59.827 55.0 15.93 0.0 37.61 2.24 F
1136 3984 0.400213 TGGCTGAACCGAACCATCTT 59.600 50.0 0.00 0.0 43.94 2.40 F
1206 4054 0.609957 TCAACTTCTCCTCCGCGGTA 60.610 55.0 27.15 11.2 0.00 4.02 F
1352 4200 0.746923 GGGCGCTAGGTTTAGGGTTG 60.747 60.0 7.64 0.0 40.82 3.77 F
2710 5607 0.932399 CAGCAAAAACAAGCAGGTGC 59.068 50.0 0.00 0.0 42.49 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2159 5047 1.266718 TGCGACACTTTCAGAAATGGC 59.733 47.619 0.00 0.00 0.00 4.40 R
2161 5049 3.885484 ACTGCGACACTTTCAGAAATG 57.115 42.857 0.00 0.57 0.00 2.32 R
2858 5755 3.120786 GCAAACATTTCTTGCATCACTGC 60.121 43.478 2.79 0.00 46.78 4.40 R
2872 5769 9.491675 TTTGAAATTGATACATCAGCAAACATT 57.508 25.926 0.00 0.00 35.85 2.71 R
2938 5835 7.994425 TGTGTACTCATTTTTCATACCACAT 57.006 32.000 0.00 0.00 0.00 3.21 R
2995 5892 4.660938 GTGCTCCCCGGGTTGCTT 62.661 66.667 27.76 0.00 0.00 3.91 R
3004 5901 1.270550 CAAACAATCACTGTGCTCCCC 59.729 52.381 2.12 0.00 38.67 4.81 R
3250 6147 1.005924 AGTCCAATAAACCAGGCCCAG 59.994 52.381 0.00 0.00 0.00 4.45 R
3400 6566 5.972107 AGAGACAAATGTTAGCAGCAATT 57.028 34.783 0.00 0.00 0.00 2.32 R
4682 7944 0.179094 CTGTTGGCCGCCGTCTATTA 60.179 55.000 4.58 0.00 0.00 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.548494 GCCTTTACTACTCGGAATAGAGC 58.452 47.826 0.00 0.00 41.77 4.09
52 53 4.278919 GCCTTTACTACTCGGAATAGAGCT 59.721 45.833 0.00 0.00 41.77 4.09
70 75 1.067071 GCTCCGTTGCTTGTACTAGGT 60.067 52.381 6.46 0.00 0.00 3.08
78 83 5.484715 GTTGCTTGTACTAGGTCCATACAA 58.515 41.667 6.46 11.04 36.66 2.41
126 836 3.635099 TCCACCTGGGATCGAATCT 57.365 52.632 0.00 0.00 42.15 2.40
365 3103 8.827177 ATCTAATGTTCACGAGTCAAGTTTTA 57.173 30.769 0.00 0.00 0.00 1.52
367 3105 9.100554 TCTAATGTTCACGAGTCAAGTTTTAAA 57.899 29.630 0.00 0.00 0.00 1.52
611 3444 9.974980 ACCAATTCTGTTTGTTTTACGAATTAT 57.025 25.926 0.00 0.00 32.70 1.28
620 3453 8.531530 GTTTGTTTTACGAATTATGGCATGATC 58.468 33.333 10.98 4.67 0.00 2.92
648 3481 9.921637 TTTTTATTTCTATTCATGCTTTTCCGT 57.078 25.926 0.00 0.00 0.00 4.69
650 3483 6.757897 ATTTCTATTCATGCTTTTCCGTCA 57.242 33.333 0.00 0.00 0.00 4.35
652 3485 5.739752 TCTATTCATGCTTTTCCGTCATG 57.260 39.130 0.00 0.00 39.02 3.07
656 3489 8.147704 TCTATTCATGCTTTTCCGTCATGTATA 58.852 33.333 0.00 0.00 38.82 1.47
659 3503 8.669946 TTCATGCTTTTCCGTCATGTATAATA 57.330 30.769 0.00 0.00 38.82 0.98
711 3556 8.010733 TCCAAAATTTGATCTAATTAGGCCTG 57.989 34.615 17.99 0.00 0.00 4.85
713 3558 8.260114 CCAAAATTTGATCTAATTAGGCCTGTT 58.740 33.333 17.99 12.99 0.00 3.16
727 3572 2.729360 GGCCTGTTATGTTTTCAAACGC 59.271 45.455 0.00 0.00 41.74 4.84
728 3573 2.403698 GCCTGTTATGTTTTCAAACGCG 59.596 45.455 3.53 3.53 41.74 6.01
729 3574 3.850374 GCCTGTTATGTTTTCAAACGCGA 60.850 43.478 15.93 0.00 41.74 5.87
730 3575 4.472286 CCTGTTATGTTTTCAAACGCGAT 58.528 39.130 15.93 0.00 41.74 4.58
731 3576 4.915085 CCTGTTATGTTTTCAAACGCGATT 59.085 37.500 15.93 3.59 41.74 3.34
732 3577 5.059221 CCTGTTATGTTTTCAAACGCGATTC 59.941 40.000 15.93 0.00 41.74 2.52
733 3578 5.753744 TGTTATGTTTTCAAACGCGATTCT 58.246 33.333 15.93 0.00 41.74 2.40
734 3579 6.202937 TGTTATGTTTTCAAACGCGATTCTT 58.797 32.000 15.93 0.00 41.74 2.52
735 3580 6.693545 TGTTATGTTTTCAAACGCGATTCTTT 59.306 30.769 15.93 0.00 41.74 2.52
736 3581 5.559694 ATGTTTTCAAACGCGATTCTTTG 57.440 34.783 15.93 13.59 41.74 2.77
737 3582 3.794028 TGTTTTCAAACGCGATTCTTTGG 59.206 39.130 15.93 0.00 41.74 3.28
738 3583 2.044888 TTCAAACGCGATTCTTTGGC 57.955 45.000 15.93 0.00 0.00 4.52
742 3587 2.817834 CGCGATTCTTTGGCGGGA 60.818 61.111 0.00 0.00 45.69 5.14
743 3588 2.813179 CGCGATTCTTTGGCGGGAG 61.813 63.158 0.00 0.00 45.69 4.30
744 3589 2.472909 GCGATTCTTTGGCGGGAGG 61.473 63.158 0.00 0.00 0.00 4.30
745 3590 1.220749 CGATTCTTTGGCGGGAGGA 59.779 57.895 0.00 0.00 0.00 3.71
746 3591 1.090052 CGATTCTTTGGCGGGAGGAC 61.090 60.000 0.00 0.00 0.00 3.85
747 3592 1.078426 ATTCTTTGGCGGGAGGACG 60.078 57.895 0.00 0.00 0.00 4.79
748 3593 1.550130 ATTCTTTGGCGGGAGGACGA 61.550 55.000 0.00 0.00 35.47 4.20
749 3594 1.760479 TTCTTTGGCGGGAGGACGAA 61.760 55.000 0.00 0.00 35.47 3.85
750 3595 1.302192 CTTTGGCGGGAGGACGAAA 60.302 57.895 0.00 0.00 35.47 3.46
751 3596 1.574702 CTTTGGCGGGAGGACGAAAC 61.575 60.000 0.00 0.00 35.47 2.78
752 3597 2.326773 TTTGGCGGGAGGACGAAACA 62.327 55.000 0.00 0.00 35.47 2.83
753 3598 2.434359 GGCGGGAGGACGAAACAG 60.434 66.667 0.00 0.00 35.47 3.16
754 3599 2.654877 GCGGGAGGACGAAACAGA 59.345 61.111 0.00 0.00 35.47 3.41
755 3600 1.218316 GCGGGAGGACGAAACAGAT 59.782 57.895 0.00 0.00 35.47 2.90
756 3601 1.084370 GCGGGAGGACGAAACAGATG 61.084 60.000 0.00 0.00 35.47 2.90
757 3602 0.530744 CGGGAGGACGAAACAGATGA 59.469 55.000 0.00 0.00 35.47 2.92
758 3603 1.137086 CGGGAGGACGAAACAGATGAT 59.863 52.381 0.00 0.00 35.47 2.45
759 3604 2.555199 GGGAGGACGAAACAGATGATG 58.445 52.381 0.00 0.00 0.00 3.07
760 3605 2.555199 GGAGGACGAAACAGATGATGG 58.445 52.381 0.00 0.00 0.00 3.51
761 3606 2.093447 GGAGGACGAAACAGATGATGGT 60.093 50.000 0.00 0.00 0.00 3.55
762 3607 3.600388 GAGGACGAAACAGATGATGGTT 58.400 45.455 0.00 0.00 43.26 3.67
781 3629 0.687920 TCGCTGGAACATGGGTTGTA 59.312 50.000 0.00 0.00 37.68 2.41
782 3630 1.086696 CGCTGGAACATGGGTTGTAG 58.913 55.000 0.00 0.00 37.68 2.74
784 3632 1.886222 GCTGGAACATGGGTTGTAGCA 60.886 52.381 0.00 0.00 40.02 3.49
788 3636 2.351350 GGAACATGGGTTGTAGCAAACG 60.351 50.000 0.00 0.00 37.68 3.60
790 3638 2.151202 ACATGGGTTGTAGCAAACGAG 58.849 47.619 0.00 0.00 36.57 4.18
791 3639 1.468520 CATGGGTTGTAGCAAACGAGG 59.531 52.381 0.00 0.00 0.00 4.63
792 3640 0.250553 TGGGTTGTAGCAAACGAGGG 60.251 55.000 0.00 0.00 0.00 4.30
793 3641 0.035739 GGGTTGTAGCAAACGAGGGA 59.964 55.000 0.00 0.00 0.00 4.20
794 3642 1.543871 GGGTTGTAGCAAACGAGGGAA 60.544 52.381 0.00 0.00 0.00 3.97
795 3643 2.223745 GGTTGTAGCAAACGAGGGAAA 58.776 47.619 0.00 0.00 0.00 3.13
796 3644 2.619646 GGTTGTAGCAAACGAGGGAAAA 59.380 45.455 0.00 0.00 0.00 2.29
797 3645 3.067040 GGTTGTAGCAAACGAGGGAAAAA 59.933 43.478 0.00 0.00 0.00 1.94
817 3665 3.974871 AAAATAACACAACCGTTCGCT 57.025 38.095 0.00 0.00 0.00 4.93
818 3666 3.531262 AAATAACACAACCGTTCGCTC 57.469 42.857 0.00 0.00 0.00 5.03
819 3667 1.435577 ATAACACAACCGTTCGCTCC 58.564 50.000 0.00 0.00 0.00 4.70
820 3668 0.104487 TAACACAACCGTTCGCTCCA 59.896 50.000 0.00 0.00 0.00 3.86
821 3669 0.534203 AACACAACCGTTCGCTCCAT 60.534 50.000 0.00 0.00 0.00 3.41
822 3670 0.949105 ACACAACCGTTCGCTCCATC 60.949 55.000 0.00 0.00 0.00 3.51
841 3689 4.422840 CATCATTCGTTGGCATTTTAGCA 58.577 39.130 0.00 0.00 35.83 3.49
842 3690 4.511617 TCATTCGTTGGCATTTTAGCAA 57.488 36.364 0.00 0.00 35.83 3.91
843 3691 4.233789 TCATTCGTTGGCATTTTAGCAAC 58.766 39.130 0.00 0.00 35.83 4.17
844 3692 2.715737 TCGTTGGCATTTTAGCAACC 57.284 45.000 0.00 0.00 35.83 3.77
845 3693 2.235016 TCGTTGGCATTTTAGCAACCT 58.765 42.857 0.00 0.00 35.83 3.50
846 3694 2.625790 TCGTTGGCATTTTAGCAACCTT 59.374 40.909 0.00 0.00 35.83 3.50
847 3695 3.821600 TCGTTGGCATTTTAGCAACCTTA 59.178 39.130 0.00 0.00 35.83 2.69
848 3696 4.278669 TCGTTGGCATTTTAGCAACCTTAA 59.721 37.500 0.00 0.00 35.83 1.85
849 3697 5.047660 TCGTTGGCATTTTAGCAACCTTAAT 60.048 36.000 0.00 0.00 35.83 1.40
850 3698 6.151312 TCGTTGGCATTTTAGCAACCTTAATA 59.849 34.615 0.00 0.00 35.83 0.98
851 3699 6.809196 CGTTGGCATTTTAGCAACCTTAATAA 59.191 34.615 0.00 0.00 35.83 1.40
852 3700 7.009174 CGTTGGCATTTTAGCAACCTTAATAAG 59.991 37.037 0.00 0.00 35.83 1.73
853 3701 7.475137 TGGCATTTTAGCAACCTTAATAAGT 57.525 32.000 0.00 0.00 35.83 2.24
854 3702 7.319646 TGGCATTTTAGCAACCTTAATAAGTG 58.680 34.615 0.00 0.00 35.83 3.16
855 3703 7.039363 TGGCATTTTAGCAACCTTAATAAGTGT 60.039 33.333 0.00 0.00 35.83 3.55
856 3704 7.488150 GGCATTTTAGCAACCTTAATAAGTGTC 59.512 37.037 0.00 0.00 35.83 3.67
857 3705 8.026607 GCATTTTAGCAACCTTAATAAGTGTCA 58.973 33.333 0.00 0.00 0.00 3.58
858 3706 9.341899 CATTTTAGCAACCTTAATAAGTGTCAC 57.658 33.333 0.00 0.00 0.00 3.67
859 3707 8.453238 TTTTAGCAACCTTAATAAGTGTCACA 57.547 30.769 5.62 0.00 0.00 3.58
860 3708 8.630054 TTTAGCAACCTTAATAAGTGTCACAT 57.370 30.769 5.62 0.00 0.00 3.21
861 3709 6.500684 AGCAACCTTAATAAGTGTCACATG 57.499 37.500 5.62 0.00 0.00 3.21
862 3710 6.003950 AGCAACCTTAATAAGTGTCACATGT 58.996 36.000 5.62 0.00 0.00 3.21
863 3711 6.072508 AGCAACCTTAATAAGTGTCACATGTG 60.073 38.462 20.18 20.18 0.00 3.21
864 3712 6.293955 GCAACCTTAATAAGTGTCACATGTGT 60.294 38.462 24.63 8.38 0.00 3.72
865 3713 6.801539 ACCTTAATAAGTGTCACATGTGTG 57.198 37.500 24.63 6.81 46.91 3.82
866 3714 5.705441 ACCTTAATAAGTGTCACATGTGTGG 59.295 40.000 24.63 12.23 45.65 4.17
867 3715 5.705441 CCTTAATAAGTGTCACATGTGTGGT 59.295 40.000 24.63 9.95 45.65 4.16
868 3716 6.876789 CCTTAATAAGTGTCACATGTGTGGTA 59.123 38.462 24.63 11.63 45.65 3.25
869 3717 7.148474 CCTTAATAAGTGTCACATGTGTGGTAC 60.148 40.741 24.63 15.86 45.65 3.34
870 3718 2.148916 AGTGTCACATGTGTGGTACG 57.851 50.000 24.63 0.00 45.65 3.67
871 3719 1.684450 AGTGTCACATGTGTGGTACGA 59.316 47.619 24.63 1.14 45.65 3.43
872 3720 2.101750 AGTGTCACATGTGTGGTACGAA 59.898 45.455 24.63 0.35 45.65 3.85
873 3721 2.220133 GTGTCACATGTGTGGTACGAAC 59.780 50.000 24.63 13.44 45.65 3.95
874 3722 1.454276 GTCACATGTGTGGTACGAACG 59.546 52.381 24.63 0.00 45.65 3.95
875 3723 1.337387 TCACATGTGTGGTACGAACGA 59.663 47.619 24.63 0.00 45.65 3.85
876 3724 1.719246 CACATGTGTGGTACGAACGAG 59.281 52.381 18.03 0.00 42.10 4.18
877 3725 1.338973 ACATGTGTGGTACGAACGAGT 59.661 47.619 0.00 0.00 0.00 4.18
878 3726 2.223876 ACATGTGTGGTACGAACGAGTT 60.224 45.455 0.00 0.00 0.00 3.01
879 3727 2.582728 TGTGTGGTACGAACGAGTTT 57.417 45.000 0.14 0.00 0.00 2.66
880 3728 3.706802 TGTGTGGTACGAACGAGTTTA 57.293 42.857 0.14 0.00 0.00 2.01
881 3729 3.631144 TGTGTGGTACGAACGAGTTTAG 58.369 45.455 0.14 0.00 0.00 1.85
882 3730 3.066621 TGTGTGGTACGAACGAGTTTAGT 59.933 43.478 0.14 0.00 0.00 2.24
883 3731 3.423206 GTGTGGTACGAACGAGTTTAGTG 59.577 47.826 0.14 0.00 0.00 2.74
884 3732 3.314913 TGTGGTACGAACGAGTTTAGTGA 59.685 43.478 0.14 0.00 0.00 3.41
885 3733 3.665871 GTGGTACGAACGAGTTTAGTGAC 59.334 47.826 0.14 0.00 0.00 3.67
886 3734 2.904932 GGTACGAACGAGTTTAGTGACG 59.095 50.000 0.14 0.00 0.00 4.35
887 3735 1.402511 ACGAACGAGTTTAGTGACGC 58.597 50.000 0.14 0.00 0.00 5.19
888 3736 0.357894 CGAACGAGTTTAGTGACGCG 59.642 55.000 3.53 3.53 46.14 6.01
889 3737 1.678360 GAACGAGTTTAGTGACGCGA 58.322 50.000 15.93 0.00 43.99 5.87
890 3738 1.642843 GAACGAGTTTAGTGACGCGAG 59.357 52.381 15.93 0.00 43.99 5.03
891 3739 0.109873 ACGAGTTTAGTGACGCGAGG 60.110 55.000 15.93 0.00 43.99 4.63
892 3740 0.167470 CGAGTTTAGTGACGCGAGGA 59.833 55.000 15.93 0.00 43.99 3.71
893 3741 1.202154 CGAGTTTAGTGACGCGAGGAT 60.202 52.381 15.93 0.00 43.99 3.24
894 3742 2.186076 GAGTTTAGTGACGCGAGGATG 58.814 52.381 15.93 0.00 0.00 3.51
895 3743 1.135083 AGTTTAGTGACGCGAGGATGG 60.135 52.381 15.93 0.00 0.00 3.51
896 3744 0.892755 TTTAGTGACGCGAGGATGGT 59.107 50.000 15.93 0.00 0.00 3.55
897 3745 1.753930 TTAGTGACGCGAGGATGGTA 58.246 50.000 15.93 0.00 0.00 3.25
898 3746 1.753930 TAGTGACGCGAGGATGGTAA 58.246 50.000 15.93 0.00 0.00 2.85
899 3747 0.172803 AGTGACGCGAGGATGGTAAC 59.827 55.000 15.93 0.00 0.00 2.50
900 3748 0.172803 GTGACGCGAGGATGGTAACT 59.827 55.000 15.93 0.00 37.61 2.24
901 3749 0.892755 TGACGCGAGGATGGTAACTT 59.107 50.000 15.93 0.00 37.61 2.66
902 3750 1.274167 TGACGCGAGGATGGTAACTTT 59.726 47.619 15.93 0.00 37.61 2.66
927 3775 5.622180 AGGGAGAAGTCTGTTTTAAACCTC 58.378 41.667 5.32 3.63 0.00 3.85
935 3783 3.492011 TCTGTTTTAAACCTCGTCTTCGC 59.508 43.478 5.32 0.00 36.96 4.70
1047 3895 2.183409 CCAAACAGGGATTCGCTGG 58.817 57.895 28.05 14.46 46.52 4.85
1136 3984 0.400213 TGGCTGAACCGAACCATCTT 59.600 50.000 0.00 0.00 43.94 2.40
1205 4053 1.258445 ATCAACTTCTCCTCCGCGGT 61.258 55.000 27.15 0.00 0.00 5.68
1206 4054 0.609957 TCAACTTCTCCTCCGCGGTA 60.610 55.000 27.15 11.20 0.00 4.02
1221 4069 2.202703 GTAGCGATGGCGAACGGT 60.203 61.111 8.27 8.27 46.35 4.83
1352 4200 0.746923 GGGCGCTAGGTTTAGGGTTG 60.747 60.000 7.64 0.00 40.82 3.77
1520 4377 5.329399 ACTGTCAGATTCCACTAGAGTTCT 58.671 41.667 6.91 0.00 0.00 3.01
1524 4381 6.719829 TGTCAGATTCCACTAGAGTTCTTACA 59.280 38.462 0.00 0.00 0.00 2.41
1691 4548 2.952310 GGCAGGGAGTTGATAAATGGAC 59.048 50.000 0.00 0.00 0.00 4.02
1713 4570 7.177216 TGGACTGCTTTTCTTATTTGATGATGT 59.823 33.333 0.00 0.00 0.00 3.06
1733 4590 4.650734 TGTTGGTTGCATGAAGATGTCTA 58.349 39.130 0.00 0.00 31.50 2.59
1783 4641 7.766278 GCTGAAGTATATGTGGAGTATAATGGG 59.234 40.741 0.00 0.00 0.00 4.00
1844 4702 4.897509 TTTGAAGGAGATGAGCTTGAGA 57.102 40.909 0.00 0.00 0.00 3.27
1855 4713 2.369860 TGAGCTTGAGAACCTGATGTGT 59.630 45.455 0.00 0.00 0.00 3.72
1870 4728 4.847198 TGATGTGTATTGGCAGTGAAGAT 58.153 39.130 0.00 0.00 0.00 2.40
1872 4730 2.749076 TGTGTATTGGCAGTGAAGATGC 59.251 45.455 0.00 0.00 43.09 3.91
1877 4735 0.983467 TGGCAGTGAAGATGCACCTA 59.017 50.000 0.00 0.00 45.68 3.08
1908 4784 1.671328 CACAGCAGAAGATGAGCATGG 59.329 52.381 0.00 0.00 34.60 3.66
1928 4804 4.661222 TGGCAATGGAAATGAACAGACTA 58.339 39.130 0.00 0.00 0.00 2.59
1957 4833 4.867608 GCAAGAGGAGAGATACTTGAACAC 59.132 45.833 0.00 0.00 41.16 3.32
1961 4837 7.341445 AGAGGAGAGATACTTGAACACATAC 57.659 40.000 0.00 0.00 0.00 2.39
1985 4861 2.560981 GTTCCCAATAAAGGTGGTGTGG 59.439 50.000 0.00 0.00 34.01 4.17
2080 4956 8.408601 GTTGTTAATCCAACTCAAGCATATGAT 58.591 33.333 6.97 0.00 41.17 2.45
2103 4991 3.963129 TGTCCCAAGTTTCTGAAGTTGT 58.037 40.909 11.41 0.00 42.21 3.32
2105 4993 5.123227 TGTCCCAAGTTTCTGAAGTTGTAG 58.877 41.667 11.41 5.36 42.21 2.74
2112 5000 8.190784 CCAAGTTTCTGAAGTTGTAGAAAATGT 58.809 33.333 11.47 3.03 42.58 2.71
2121 5009 7.497579 TGAAGTTGTAGAAAATGTTGCAGTAGA 59.502 33.333 0.00 0.00 0.00 2.59
2175 5063 3.821033 GGTACTGCCATTTCTGAAAGTGT 59.179 43.478 8.95 5.54 37.17 3.55
2176 5064 4.083271 GGTACTGCCATTTCTGAAAGTGTC 60.083 45.833 8.95 0.00 37.17 3.67
2183 5071 4.377431 CCATTTCTGAAAGTGTCGCAGTAC 60.377 45.833 8.95 0.00 33.76 2.73
2228 5125 6.432162 AGTTGCACAAGATGTTGTAGATTCAT 59.568 34.615 8.06 0.00 45.57 2.57
2229 5126 6.822667 TGCACAAGATGTTGTAGATTCATT 57.177 33.333 8.06 0.00 45.57 2.57
2230 5127 7.218228 TGCACAAGATGTTGTAGATTCATTT 57.782 32.000 8.06 0.00 45.57 2.32
2320 5217 6.390987 CTGAGAAAGCATGCAAGAAAATTC 57.609 37.500 21.98 11.49 0.00 2.17
2328 5225 5.699458 AGCATGCAAGAAAATTCAGGAAAAG 59.301 36.000 21.98 0.00 0.00 2.27
2368 5265 2.945668 GTGGGCTGATACAGATTCAACC 59.054 50.000 2.81 0.00 32.44 3.77
2414 5311 2.684927 GCAAATGTGGAGGAGGCTGTAT 60.685 50.000 0.00 0.00 0.00 2.29
2428 5325 5.128008 GGAGGCTGTATAGGATATGGAGTTC 59.872 48.000 0.00 0.00 0.00 3.01
2445 5342 4.202202 GGAGTTCGAATCATCTGATGAGGT 60.202 45.833 23.25 14.72 43.53 3.85
2497 5394 3.330701 ACATGGTTAGAAGGAAGAGCCAA 59.669 43.478 0.00 0.00 40.02 4.52
2536 5433 3.993081 CTGACTCTGACATTCCACACTTC 59.007 47.826 0.00 0.00 0.00 3.01
2542 5439 3.732212 TGACATTCCACACTTCAGTCTG 58.268 45.455 0.00 0.00 0.00 3.51
2659 5556 3.755378 AGCACAGAGTTAGAGCAAAATGG 59.245 43.478 0.00 0.00 0.00 3.16
2710 5607 0.932399 CAGCAAAAACAAGCAGGTGC 59.068 50.000 0.00 0.00 42.49 5.01
2858 5755 4.497006 GGAAGATTGACAGCATGAAATCCG 60.497 45.833 0.00 0.00 40.80 4.18
2872 5769 1.825090 AATCCGCAGTGATGCAAGAA 58.175 45.000 0.00 0.00 34.41 2.52
3004 5901 2.742589 GGAACTTCTTAGAAGCAACCCG 59.257 50.000 20.59 0.00 0.00 5.28
3017 5914 4.954118 ACCCGGGGAGCACAGTGA 62.954 66.667 27.92 0.00 0.00 3.41
3018 5915 3.402681 CCCGGGGAGCACAGTGAT 61.403 66.667 14.71 0.00 0.00 3.06
3058 5955 5.893897 AAGAGATGGAGCAGAACATTTTC 57.106 39.130 0.00 0.00 0.00 2.29
3136 6033 1.002069 AAGTGATTGGGCTGGATGGA 58.998 50.000 0.00 0.00 0.00 3.41
3193 6090 2.306255 CTGCAATTGCCAGGGATGCC 62.306 60.000 26.94 0.00 41.18 4.40
3250 6147 2.701423 GGAGAAGGAGACCAAGGATACC 59.299 54.545 0.00 0.00 37.17 2.73
3310 6207 3.956199 ACATTAATGATCAAGGTGCTGGG 59.044 43.478 22.16 0.00 0.00 4.45
3329 6226 3.245122 TGGGTGGGTCTTTATTTCTGACC 60.245 47.826 0.00 0.00 46.83 4.02
3527 6779 4.875544 TGGAGAAAGAAACACAAAGACG 57.124 40.909 0.00 0.00 0.00 4.18
3796 7048 7.551974 CAGCAAGAGAAGATCAGGAAGAAATTA 59.448 37.037 0.00 0.00 0.00 1.40
4025 7280 2.558359 GGTTACTTTCAGTTGGCAGCAT 59.442 45.455 3.63 0.00 0.00 3.79
4140 7395 1.415659 GATGTATGAGCACTGCCTCCT 59.584 52.381 0.00 0.00 0.00 3.69
4168 7423 2.103373 GAAGGAGAGGAAAAATGGCCC 58.897 52.381 0.00 0.00 0.00 5.80
4291 7547 2.226674 GGGTAAGAAACTGAGCAAGCAC 59.773 50.000 0.00 0.00 0.00 4.40
4293 7549 1.668419 AAGAAACTGAGCAAGCACGT 58.332 45.000 0.00 0.00 0.00 4.49
4417 7678 3.011708 AGAGAGGGAGAAAAGAGAGAGCT 59.988 47.826 0.00 0.00 0.00 4.09
4468 7729 6.035327 GCTCTGTTCAAATGAAATTATGCACC 59.965 38.462 0.00 0.00 33.67 5.01
4484 7746 8.891671 ATTATGCACCTATTTTGCCTAATTTG 57.108 30.769 0.00 0.00 37.44 2.32
4509 7771 9.823647 TGTCTATTTTATTTGCTTTTGGTTTCA 57.176 25.926 0.00 0.00 0.00 2.69
4515 7777 9.794685 TTTTATTTGCTTTTGGTTTCAATTTCC 57.205 25.926 0.00 0.00 32.28 3.13
4516 7778 8.744568 TTATTTGCTTTTGGTTTCAATTTCCT 57.255 26.923 0.00 0.00 32.28 3.36
4517 7779 7.643569 ATTTGCTTTTGGTTTCAATTTCCTT 57.356 28.000 0.00 0.00 32.28 3.36
4518 7780 7.459795 TTTGCTTTTGGTTTCAATTTCCTTT 57.540 28.000 0.00 0.00 32.28 3.11
4519 7781 7.459795 TTGCTTTTGGTTTCAATTTCCTTTT 57.540 28.000 0.00 0.00 32.28 2.27
4520 7782 6.850555 TGCTTTTGGTTTCAATTTCCTTTTG 58.149 32.000 0.00 0.00 32.28 2.44
4521 7783 6.127786 TGCTTTTGGTTTCAATTTCCTTTTGG 60.128 34.615 0.00 0.00 35.16 3.28
4522 7784 6.127758 GCTTTTGGTTTCAATTTCCTTTTGGT 60.128 34.615 0.00 0.00 35.30 3.67
4523 7785 7.576666 GCTTTTGGTTTCAATTTCCTTTTGGTT 60.577 33.333 0.00 0.00 35.30 3.67
4524 7786 7.767250 TTTGGTTTCAATTTCCTTTTGGTTT 57.233 28.000 0.00 0.00 35.30 3.27
4525 7787 6.749923 TGGTTTCAATTTCCTTTTGGTTTG 57.250 33.333 0.00 0.00 41.38 2.93
4526 7788 6.241645 TGGTTTCAATTTCCTTTTGGTTTGT 58.758 32.000 0.00 0.00 41.38 2.83
4527 7789 6.717084 TGGTTTCAATTTCCTTTTGGTTTGTT 59.283 30.769 0.00 0.00 41.38 2.83
4528 7790 7.231519 TGGTTTCAATTTCCTTTTGGTTTGTTT 59.768 29.630 0.00 0.00 41.38 2.83
4529 7791 8.085296 GGTTTCAATTTCCTTTTGGTTTGTTTT 58.915 29.630 0.00 0.00 41.38 2.43
4530 7792 9.469807 GTTTCAATTTCCTTTTGGTTTGTTTTT 57.530 25.926 0.00 0.00 41.38 1.94
4568 7830 9.170584 GACAACTTTAGTTTCAAAAGTATCTGC 57.829 33.333 1.96 0.00 44.35 4.26
4569 7831 8.682710 ACAACTTTAGTTTCAAAAGTATCTGCA 58.317 29.630 1.96 0.00 44.35 4.41
4570 7832 8.958043 CAACTTTAGTTTCAAAAGTATCTGCAC 58.042 33.333 1.96 0.00 44.35 4.57
4571 7833 7.352739 ACTTTAGTTTCAAAAGTATCTGCACG 58.647 34.615 0.00 0.00 43.54 5.34
4572 7834 6.854496 TTAGTTTCAAAAGTATCTGCACGT 57.146 33.333 0.00 0.00 0.00 4.49
4573 7835 7.949903 TTAGTTTCAAAAGTATCTGCACGTA 57.050 32.000 0.00 0.00 0.00 3.57
4574 7836 8.542497 TTAGTTTCAAAAGTATCTGCACGTAT 57.458 30.769 0.00 0.00 0.00 3.06
4575 7837 6.831769 AGTTTCAAAAGTATCTGCACGTATG 58.168 36.000 0.00 0.00 0.00 2.39
4576 7838 5.794687 TTCAAAAGTATCTGCACGTATGG 57.205 39.130 0.00 0.00 0.00 2.74
4577 7839 3.621268 TCAAAAGTATCTGCACGTATGGC 59.379 43.478 0.00 0.00 0.00 4.40
4578 7840 2.979814 AAGTATCTGCACGTATGGCA 57.020 45.000 0.00 0.00 39.32 4.92
4579 7841 2.225068 AGTATCTGCACGTATGGCAC 57.775 50.000 0.00 0.00 36.11 5.01
4580 7842 1.757118 AGTATCTGCACGTATGGCACT 59.243 47.619 0.00 0.00 36.11 4.40
4581 7843 2.168521 AGTATCTGCACGTATGGCACTT 59.831 45.455 0.00 0.00 36.11 3.16
4582 7844 2.979814 ATCTGCACGTATGGCACTTA 57.020 45.000 0.00 0.00 36.11 2.24
4583 7845 2.979814 TCTGCACGTATGGCACTTAT 57.020 45.000 0.00 0.00 36.11 1.73
4584 7846 3.260475 TCTGCACGTATGGCACTTATT 57.740 42.857 0.00 0.00 36.11 1.40
4585 7847 4.394439 TCTGCACGTATGGCACTTATTA 57.606 40.909 0.00 0.00 36.11 0.98
4586 7848 4.956085 TCTGCACGTATGGCACTTATTAT 58.044 39.130 0.00 0.00 36.11 1.28
4587 7849 5.364778 TCTGCACGTATGGCACTTATTATT 58.635 37.500 0.00 0.00 36.11 1.40
4588 7850 5.820423 TCTGCACGTATGGCACTTATTATTT 59.180 36.000 0.00 0.00 36.11 1.40
4589 7851 5.815850 TGCACGTATGGCACTTATTATTTG 58.184 37.500 0.00 0.00 36.11 2.32
4590 7852 5.212194 GCACGTATGGCACTTATTATTTGG 58.788 41.667 0.00 0.00 0.00 3.28
4591 7853 5.757886 CACGTATGGCACTTATTATTTGGG 58.242 41.667 0.00 0.00 0.00 4.12
4592 7854 5.298276 CACGTATGGCACTTATTATTTGGGT 59.702 40.000 0.00 0.00 0.00 4.51
4593 7855 5.889289 ACGTATGGCACTTATTATTTGGGTT 59.111 36.000 0.00 0.00 0.00 4.11
4594 7856 6.378848 ACGTATGGCACTTATTATTTGGGTTT 59.621 34.615 0.00 0.00 0.00 3.27
4595 7857 7.556996 ACGTATGGCACTTATTATTTGGGTTTA 59.443 33.333 0.00 0.00 0.00 2.01
4596 7858 8.073768 CGTATGGCACTTATTATTTGGGTTTAG 58.926 37.037 0.00 0.00 0.00 1.85
4597 7859 6.215495 TGGCACTTATTATTTGGGTTTAGC 57.785 37.500 0.00 0.00 0.00 3.09
4598 7860 5.717178 TGGCACTTATTATTTGGGTTTAGCA 59.283 36.000 0.00 0.00 0.00 3.49
4599 7861 6.211584 TGGCACTTATTATTTGGGTTTAGCAA 59.788 34.615 0.00 0.00 0.00 3.91
4600 7862 6.756542 GGCACTTATTATTTGGGTTTAGCAAG 59.243 38.462 0.00 0.00 0.00 4.01
4601 7863 7.363443 GGCACTTATTATTTGGGTTTAGCAAGA 60.363 37.037 0.00 0.00 0.00 3.02
4602 7864 7.702348 GCACTTATTATTTGGGTTTAGCAAGAG 59.298 37.037 0.00 0.00 0.00 2.85
4603 7865 7.702348 CACTTATTATTTGGGTTTAGCAAGAGC 59.298 37.037 0.00 0.00 42.56 4.09
4609 7871 8.241317 TATTTGGGTTTAGCAAGAGCGCAAAT 62.241 38.462 11.47 20.01 46.60 2.32
4610 7872 9.903977 TATTTGGGTTTAGCAAGAGCGCAAATC 62.904 40.741 19.85 0.00 45.08 2.17
4616 7878 3.680642 GCAAGAGCGCAAATCATAGAA 57.319 42.857 11.47 0.00 0.00 2.10
4617 7879 4.019919 GCAAGAGCGCAAATCATAGAAA 57.980 40.909 11.47 0.00 0.00 2.52
4618 7880 4.604976 GCAAGAGCGCAAATCATAGAAAT 58.395 39.130 11.47 0.00 0.00 2.17
4619 7881 5.751680 GCAAGAGCGCAAATCATAGAAATA 58.248 37.500 11.47 0.00 0.00 1.40
4620 7882 5.850128 GCAAGAGCGCAAATCATAGAAATAG 59.150 40.000 11.47 0.00 0.00 1.73
4621 7883 6.293081 GCAAGAGCGCAAATCATAGAAATAGA 60.293 38.462 11.47 0.00 0.00 1.98
4622 7884 7.633621 CAAGAGCGCAAATCATAGAAATAGAA 58.366 34.615 11.47 0.00 0.00 2.10
4623 7885 7.418840 AGAGCGCAAATCATAGAAATAGAAG 57.581 36.000 11.47 0.00 0.00 2.85
4624 7886 7.212976 AGAGCGCAAATCATAGAAATAGAAGA 58.787 34.615 11.47 0.00 0.00 2.87
4625 7887 7.712639 AGAGCGCAAATCATAGAAATAGAAGAA 59.287 33.333 11.47 0.00 0.00 2.52
4626 7888 8.213518 AGCGCAAATCATAGAAATAGAAGAAA 57.786 30.769 11.47 0.00 0.00 2.52
4627 7889 8.677300 AGCGCAAATCATAGAAATAGAAGAAAA 58.323 29.630 11.47 0.00 0.00 2.29
4628 7890 9.289303 GCGCAAATCATAGAAATAGAAGAAAAA 57.711 29.630 0.30 0.00 0.00 1.94
4648 7910 6.884280 AAAAAGTCGGAAAAGATCATGACT 57.116 33.333 0.00 0.00 43.26 3.41
4649 7911 7.979444 AAAAAGTCGGAAAAGATCATGACTA 57.021 32.000 0.00 0.00 41.64 2.59
4650 7912 6.969828 AAAGTCGGAAAAGATCATGACTAC 57.030 37.500 0.00 0.00 41.64 2.73
4651 7913 5.661056 AGTCGGAAAAGATCATGACTACA 57.339 39.130 0.00 0.00 41.07 2.74
4652 7914 5.655488 AGTCGGAAAAGATCATGACTACAG 58.345 41.667 0.00 0.00 41.07 2.74
4653 7915 5.419155 AGTCGGAAAAGATCATGACTACAGA 59.581 40.000 0.00 0.00 41.07 3.41
4654 7916 5.746245 GTCGGAAAAGATCATGACTACAGAG 59.254 44.000 0.00 0.00 34.13 3.35
4655 7917 5.419155 TCGGAAAAGATCATGACTACAGAGT 59.581 40.000 0.00 0.00 39.20 3.24
4656 7918 5.518128 CGGAAAAGATCATGACTACAGAGTG 59.482 44.000 0.00 0.00 35.45 3.51
4657 7919 6.625960 CGGAAAAGATCATGACTACAGAGTGA 60.626 42.308 0.00 0.00 35.45 3.41
4658 7920 6.756074 GGAAAAGATCATGACTACAGAGTGAG 59.244 42.308 0.00 0.00 35.45 3.51
4659 7921 6.849085 AAAGATCATGACTACAGAGTGAGT 57.151 37.500 0.00 0.00 35.45 3.41
4660 7922 7.946381 AAAGATCATGACTACAGAGTGAGTA 57.054 36.000 0.00 0.00 35.45 2.59
4661 7923 7.566760 AAGATCATGACTACAGAGTGAGTAG 57.433 40.000 0.00 0.00 43.51 2.57
4670 7932 3.336468 ACAGAGTGAGTAGTACAGACCG 58.664 50.000 2.52 0.00 0.00 4.79
4671 7933 3.007723 ACAGAGTGAGTAGTACAGACCGA 59.992 47.826 2.52 0.00 0.00 4.69
4672 7934 4.193090 CAGAGTGAGTAGTACAGACCGAT 58.807 47.826 2.52 0.00 0.00 4.18
4673 7935 4.034626 CAGAGTGAGTAGTACAGACCGATG 59.965 50.000 2.52 0.00 0.00 3.84
4674 7936 2.683867 AGTGAGTAGTACAGACCGATGC 59.316 50.000 2.52 0.00 0.00 3.91
4675 7937 2.022195 TGAGTAGTACAGACCGATGCC 58.978 52.381 2.52 0.00 0.00 4.40
4676 7938 1.002684 GAGTAGTACAGACCGATGCCG 60.003 57.143 2.52 0.00 0.00 5.69
4686 7948 2.731721 CGATGCCGGCGCGTAATA 60.732 61.111 27.17 8.07 38.08 0.98
4712 7976 2.030562 CCAACAGCCCGAGTCGTT 59.969 61.111 12.31 0.00 0.00 3.85
4780 8044 2.837947 ACAGAGGGTCATCATCTCCAA 58.162 47.619 0.00 0.00 0.00 3.53
4783 8047 2.122768 GAGGGTCATCATCTCCAACCT 58.877 52.381 0.00 0.00 0.00 3.50
4797 8061 0.889186 CAACCTCACCCCCGTTCAAG 60.889 60.000 0.00 0.00 0.00 3.02
4799 8063 2.750350 CTCACCCCCGTTCAAGCT 59.250 61.111 0.00 0.00 0.00 3.74
4804 8068 1.074951 CCCCCGTTCAAGCTTTCCT 59.925 57.895 0.00 0.00 0.00 3.36
4806 8070 0.036875 CCCCGTTCAAGCTTTCCTCT 59.963 55.000 0.00 0.00 0.00 3.69
4809 8073 1.270839 CCGTTCAAGCTTTCCTCTCCA 60.271 52.381 0.00 0.00 0.00 3.86
4943 8207 1.823169 ATGGGTACAACGACGTGCCT 61.823 55.000 0.00 0.00 41.09 4.75
5263 8527 0.739813 GCATTGCCGAAGTACTCCGT 60.740 55.000 0.00 0.00 0.00 4.69
5337 8601 2.358737 CCTTTTCCGGCGACAGCT 60.359 61.111 9.30 0.00 44.37 4.24
5338 8602 1.966451 CCTTTTCCGGCGACAGCTT 60.966 57.895 9.30 0.00 44.37 3.74
5339 8603 1.515521 CCTTTTCCGGCGACAGCTTT 61.516 55.000 9.30 0.00 44.37 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.500684 TTGACATTAGCCTTCATTGAGTTC 57.499 37.500 0.00 0.00 0.00 3.01
51 52 2.416972 GGACCTAGTACAAGCAACGGAG 60.417 54.545 0.00 0.00 0.00 4.63
52 53 1.547372 GGACCTAGTACAAGCAACGGA 59.453 52.381 0.00 0.00 0.00 4.69
60 65 5.020795 TGAGCTTGTATGGACCTAGTACAA 58.979 41.667 13.41 13.41 36.97 2.41
70 75 4.932789 GCGGTGAGCTTGTATGGA 57.067 55.556 0.00 0.00 44.04 3.41
223 2950 8.821894 GTTTAAATTTGCCATGTGACAAACTTA 58.178 29.630 0.00 5.74 38.50 2.24
303 3041 9.617523 ATCCTCTTAAAAATAAAAATGGCATGG 57.382 29.630 0.00 0.00 0.00 3.66
338 3076 8.467402 AAACTTGACTCGTGAACATTAGATAG 57.533 34.615 0.00 0.00 0.00 2.08
339 3077 8.827177 AAAACTTGACTCGTGAACATTAGATA 57.173 30.769 0.00 0.00 0.00 1.98
509 3342 5.543507 TTGCCATGGTCTAAACATGTTTT 57.456 34.783 27.66 12.78 43.15 2.43
564 3397 4.338118 GGTCCAATGACAACTTCAAACAGA 59.662 41.667 0.00 0.00 43.65 3.41
578 3411 5.867903 AACAAACAGAATTGGTCCAATGA 57.132 34.783 18.02 0.00 34.04 2.57
582 3415 5.357314 TCGTAAAACAAACAGAATTGGTCCA 59.643 36.000 0.00 0.00 34.56 4.02
633 3466 7.566760 TTATACATGACGGAAAAGCATGAAT 57.433 32.000 0.00 0.00 41.35 2.57
636 3469 9.897744 AAATATTATACATGACGGAAAAGCATG 57.102 29.630 0.00 0.00 43.70 4.06
685 3530 8.477256 CAGGCCTAATTAGATCAAATTTTGGAA 58.523 33.333 14.28 0.49 31.63 3.53
693 3538 9.474313 AAACATAACAGGCCTAATTAGATCAAA 57.526 29.630 14.28 0.00 0.00 2.69
705 3550 3.552068 GCGTTTGAAAACATAACAGGCCT 60.552 43.478 0.00 0.00 38.81 5.19
711 3556 6.669485 AAGAATCGCGTTTGAAAACATAAC 57.331 33.333 7.23 0.00 38.81 1.89
713 3558 5.627367 CCAAAGAATCGCGTTTGAAAACATA 59.373 36.000 18.24 0.00 38.81 2.29
715 3560 3.794028 CCAAAGAATCGCGTTTGAAAACA 59.206 39.130 18.24 0.00 38.81 2.83
727 3572 1.090052 GTCCTCCCGCCAAAGAATCG 61.090 60.000 0.00 0.00 0.00 3.34
728 3573 1.090052 CGTCCTCCCGCCAAAGAATC 61.090 60.000 0.00 0.00 0.00 2.52
729 3574 1.078426 CGTCCTCCCGCCAAAGAAT 60.078 57.895 0.00 0.00 0.00 2.40
730 3575 1.760479 TTCGTCCTCCCGCCAAAGAA 61.760 55.000 0.00 0.00 0.00 2.52
731 3576 1.760479 TTTCGTCCTCCCGCCAAAGA 61.760 55.000 0.00 0.00 0.00 2.52
732 3577 1.302192 TTTCGTCCTCCCGCCAAAG 60.302 57.895 0.00 0.00 0.00 2.77
733 3578 1.598685 GTTTCGTCCTCCCGCCAAA 60.599 57.895 0.00 0.00 0.00 3.28
734 3579 2.031465 GTTTCGTCCTCCCGCCAA 59.969 61.111 0.00 0.00 0.00 4.52
735 3580 3.234630 CTGTTTCGTCCTCCCGCCA 62.235 63.158 0.00 0.00 0.00 5.69
736 3581 2.240162 ATCTGTTTCGTCCTCCCGCC 62.240 60.000 0.00 0.00 0.00 6.13
737 3582 1.084370 CATCTGTTTCGTCCTCCCGC 61.084 60.000 0.00 0.00 0.00 6.13
738 3583 0.530744 TCATCTGTTTCGTCCTCCCG 59.469 55.000 0.00 0.00 0.00 5.14
739 3584 2.555199 CATCATCTGTTTCGTCCTCCC 58.445 52.381 0.00 0.00 0.00 4.30
740 3585 2.093447 ACCATCATCTGTTTCGTCCTCC 60.093 50.000 0.00 0.00 0.00 4.30
741 3586 3.252974 ACCATCATCTGTTTCGTCCTC 57.747 47.619 0.00 0.00 0.00 3.71
742 3587 3.600388 GAACCATCATCTGTTTCGTCCT 58.400 45.455 0.00 0.00 0.00 3.85
743 3588 2.348666 CGAACCATCATCTGTTTCGTCC 59.651 50.000 0.00 0.00 0.00 4.79
744 3589 2.222819 GCGAACCATCATCTGTTTCGTC 60.223 50.000 6.74 0.00 0.00 4.20
745 3590 1.732259 GCGAACCATCATCTGTTTCGT 59.268 47.619 6.74 0.00 0.00 3.85
746 3591 2.002586 AGCGAACCATCATCTGTTTCG 58.997 47.619 1.24 1.24 0.00 3.46
747 3592 2.096496 CCAGCGAACCATCATCTGTTTC 59.904 50.000 0.00 0.00 0.00 2.78
748 3593 2.086869 CCAGCGAACCATCATCTGTTT 58.913 47.619 0.00 0.00 0.00 2.83
749 3594 1.278985 TCCAGCGAACCATCATCTGTT 59.721 47.619 0.00 0.00 0.00 3.16
750 3595 0.904649 TCCAGCGAACCATCATCTGT 59.095 50.000 0.00 0.00 0.00 3.41
751 3596 1.667724 GTTCCAGCGAACCATCATCTG 59.332 52.381 0.00 0.00 42.26 2.90
752 3597 1.278985 TGTTCCAGCGAACCATCATCT 59.721 47.619 2.55 0.00 46.67 2.90
753 3598 1.737838 TGTTCCAGCGAACCATCATC 58.262 50.000 2.55 0.00 46.67 2.92
754 3599 2.019249 CATGTTCCAGCGAACCATCAT 58.981 47.619 2.55 0.00 46.67 2.45
755 3600 1.452110 CATGTTCCAGCGAACCATCA 58.548 50.000 2.55 0.00 46.67 3.07
756 3601 0.734889 CCATGTTCCAGCGAACCATC 59.265 55.000 2.55 0.00 46.67 3.51
757 3602 0.680921 CCCATGTTCCAGCGAACCAT 60.681 55.000 2.55 0.00 46.67 3.55
758 3603 1.303236 CCCATGTTCCAGCGAACCA 60.303 57.895 2.55 0.00 46.67 3.67
759 3604 0.893727 AACCCATGTTCCAGCGAACC 60.894 55.000 2.55 0.00 46.67 3.62
761 3606 0.179004 ACAACCCATGTTCCAGCGAA 60.179 50.000 0.00 0.00 40.06 4.70
762 3607 0.687920 TACAACCCATGTTCCAGCGA 59.312 50.000 0.00 0.00 43.63 4.93
796 3644 4.284485 GAGCGAACGGTTGTGTTATTTTT 58.716 39.130 0.00 0.00 30.75 1.94
797 3645 3.304190 GGAGCGAACGGTTGTGTTATTTT 60.304 43.478 0.00 0.00 30.75 1.82
798 3646 2.224784 GGAGCGAACGGTTGTGTTATTT 59.775 45.455 0.00 0.00 30.75 1.40
799 3647 1.802365 GGAGCGAACGGTTGTGTTATT 59.198 47.619 0.00 0.00 30.75 1.40
800 3648 1.270412 TGGAGCGAACGGTTGTGTTAT 60.270 47.619 0.00 0.00 30.75 1.89
801 3649 0.104487 TGGAGCGAACGGTTGTGTTA 59.896 50.000 0.00 0.00 30.75 2.41
802 3650 0.534203 ATGGAGCGAACGGTTGTGTT 60.534 50.000 0.00 0.00 34.02 3.32
803 3651 0.949105 GATGGAGCGAACGGTTGTGT 60.949 55.000 0.00 0.00 0.00 3.72
804 3652 0.948623 TGATGGAGCGAACGGTTGTG 60.949 55.000 0.00 0.00 0.00 3.33
805 3653 0.036388 ATGATGGAGCGAACGGTTGT 60.036 50.000 0.00 0.00 0.00 3.32
806 3654 1.062587 GAATGATGGAGCGAACGGTTG 59.937 52.381 0.00 0.00 0.00 3.77
807 3655 1.369625 GAATGATGGAGCGAACGGTT 58.630 50.000 0.00 0.00 0.00 4.44
808 3656 0.806102 CGAATGATGGAGCGAACGGT 60.806 55.000 0.00 0.00 0.00 4.83
809 3657 0.806102 ACGAATGATGGAGCGAACGG 60.806 55.000 0.00 0.00 0.00 4.44
810 3658 0.999406 AACGAATGATGGAGCGAACG 59.001 50.000 0.00 0.00 0.00 3.95
811 3659 1.062587 CCAACGAATGATGGAGCGAAC 59.937 52.381 0.00 0.00 40.34 3.95
812 3660 1.368641 CCAACGAATGATGGAGCGAA 58.631 50.000 0.00 0.00 40.34 4.70
813 3661 1.089481 GCCAACGAATGATGGAGCGA 61.089 55.000 0.00 0.00 40.34 4.93
814 3662 1.353103 GCCAACGAATGATGGAGCG 59.647 57.895 0.00 0.00 40.34 5.03
815 3663 1.027357 ATGCCAACGAATGATGGAGC 58.973 50.000 0.00 0.00 40.34 4.70
816 3664 3.788333 AAATGCCAACGAATGATGGAG 57.212 42.857 0.00 0.00 40.34 3.86
817 3665 4.439974 GCTAAAATGCCAACGAATGATGGA 60.440 41.667 0.00 0.00 40.34 3.41
818 3666 3.798337 GCTAAAATGCCAACGAATGATGG 59.202 43.478 0.00 0.00 40.83 3.51
819 3667 4.422840 TGCTAAAATGCCAACGAATGATG 58.577 39.130 0.00 0.00 0.00 3.07
820 3668 4.717233 TGCTAAAATGCCAACGAATGAT 57.283 36.364 0.00 0.00 0.00 2.45
821 3669 4.233789 GTTGCTAAAATGCCAACGAATGA 58.766 39.130 0.00 0.00 0.00 2.57
822 3670 3.367630 GGTTGCTAAAATGCCAACGAATG 59.632 43.478 0.00 0.00 0.00 2.67
856 3704 1.719246 CTCGTTCGTACCACACATGTG 59.281 52.381 24.25 24.25 45.23 3.21
857 3705 1.338973 ACTCGTTCGTACCACACATGT 59.661 47.619 0.00 0.00 0.00 3.21
858 3706 2.060326 ACTCGTTCGTACCACACATG 57.940 50.000 0.00 0.00 0.00 3.21
859 3707 2.806608 AACTCGTTCGTACCACACAT 57.193 45.000 0.00 0.00 0.00 3.21
860 3708 2.582728 AAACTCGTTCGTACCACACA 57.417 45.000 0.00 0.00 0.00 3.72
861 3709 3.423206 CACTAAACTCGTTCGTACCACAC 59.577 47.826 0.00 0.00 0.00 3.82
862 3710 3.314913 TCACTAAACTCGTTCGTACCACA 59.685 43.478 0.00 0.00 0.00 4.17
863 3711 3.665871 GTCACTAAACTCGTTCGTACCAC 59.334 47.826 0.00 0.00 0.00 4.16
864 3712 3.606846 CGTCACTAAACTCGTTCGTACCA 60.607 47.826 0.00 0.00 0.00 3.25
865 3713 2.904932 CGTCACTAAACTCGTTCGTACC 59.095 50.000 0.00 0.00 0.00 3.34
866 3714 2.336770 GCGTCACTAAACTCGTTCGTAC 59.663 50.000 0.00 0.00 0.00 3.67
867 3715 2.574322 GCGTCACTAAACTCGTTCGTA 58.426 47.619 0.00 0.00 0.00 3.43
868 3716 1.402511 GCGTCACTAAACTCGTTCGT 58.597 50.000 0.00 0.00 0.00 3.85
869 3717 0.357894 CGCGTCACTAAACTCGTTCG 59.642 55.000 0.00 0.00 0.00 3.95
870 3718 1.642843 CTCGCGTCACTAAACTCGTTC 59.357 52.381 5.77 0.00 0.00 3.95
871 3719 1.665161 CCTCGCGTCACTAAACTCGTT 60.665 52.381 5.77 0.00 0.00 3.85
872 3720 0.109873 CCTCGCGTCACTAAACTCGT 60.110 55.000 5.77 0.00 0.00 4.18
873 3721 0.167470 TCCTCGCGTCACTAAACTCG 59.833 55.000 5.77 0.00 0.00 4.18
874 3722 2.186076 CATCCTCGCGTCACTAAACTC 58.814 52.381 5.77 0.00 0.00 3.01
875 3723 1.135083 CCATCCTCGCGTCACTAAACT 60.135 52.381 5.77 0.00 0.00 2.66
876 3724 1.278238 CCATCCTCGCGTCACTAAAC 58.722 55.000 5.77 0.00 0.00 2.01
877 3725 0.892755 ACCATCCTCGCGTCACTAAA 59.107 50.000 5.77 0.00 0.00 1.85
878 3726 1.753930 TACCATCCTCGCGTCACTAA 58.246 50.000 5.77 0.00 0.00 2.24
879 3727 1.402968 GTTACCATCCTCGCGTCACTA 59.597 52.381 5.77 0.00 0.00 2.74
880 3728 0.172803 GTTACCATCCTCGCGTCACT 59.827 55.000 5.77 0.00 0.00 3.41
881 3729 0.172803 AGTTACCATCCTCGCGTCAC 59.827 55.000 5.77 0.00 0.00 3.67
882 3730 0.892755 AAGTTACCATCCTCGCGTCA 59.107 50.000 5.77 0.00 0.00 4.35
883 3731 2.005971 AAAGTTACCATCCTCGCGTC 57.994 50.000 5.77 0.00 0.00 5.19
884 3732 3.518590 CTTAAAGTTACCATCCTCGCGT 58.481 45.455 5.77 0.00 0.00 6.01
885 3733 2.864343 CCTTAAAGTTACCATCCTCGCG 59.136 50.000 0.00 0.00 0.00 5.87
886 3734 3.118519 TCCCTTAAAGTTACCATCCTCGC 60.119 47.826 0.00 0.00 0.00 5.03
887 3735 4.404715 TCTCCCTTAAAGTTACCATCCTCG 59.595 45.833 0.00 0.00 0.00 4.63
888 3736 5.952347 TCTCCCTTAAAGTTACCATCCTC 57.048 43.478 0.00 0.00 0.00 3.71
889 3737 5.791141 ACTTCTCCCTTAAAGTTACCATCCT 59.209 40.000 0.00 0.00 31.81 3.24
890 3738 6.063496 ACTTCTCCCTTAAAGTTACCATCC 57.937 41.667 0.00 0.00 31.81 3.51
891 3739 6.819146 CAGACTTCTCCCTTAAAGTTACCATC 59.181 42.308 0.00 0.00 35.90 3.51
892 3740 6.272558 ACAGACTTCTCCCTTAAAGTTACCAT 59.727 38.462 0.00 0.00 35.90 3.55
893 3741 5.605488 ACAGACTTCTCCCTTAAAGTTACCA 59.395 40.000 0.00 0.00 35.90 3.25
894 3742 6.111669 ACAGACTTCTCCCTTAAAGTTACC 57.888 41.667 0.00 0.00 35.90 2.85
895 3743 8.447924 AAAACAGACTTCTCCCTTAAAGTTAC 57.552 34.615 0.00 0.00 35.90 2.50
897 3745 9.470399 TTTAAAACAGACTTCTCCCTTAAAGTT 57.530 29.630 0.00 0.00 35.90 2.66
898 3746 8.900781 GTTTAAAACAGACTTCTCCCTTAAAGT 58.099 33.333 0.00 0.00 38.40 2.66
899 3747 8.350722 GGTTTAAAACAGACTTCTCCCTTAAAG 58.649 37.037 0.00 0.00 0.00 1.85
900 3748 8.057011 AGGTTTAAAACAGACTTCTCCCTTAAA 58.943 33.333 5.94 0.00 0.00 1.52
901 3749 7.580007 AGGTTTAAAACAGACTTCTCCCTTAA 58.420 34.615 5.94 0.00 0.00 1.85
902 3750 7.145474 AGGTTTAAAACAGACTTCTCCCTTA 57.855 36.000 5.94 0.00 0.00 2.69
927 3775 4.831307 CCGGGTCGAGCGAAGACG 62.831 72.222 8.77 5.90 39.38 4.18
935 3783 2.877360 TTCGAATTCGCCGGGTCGAG 62.877 60.000 22.90 0.00 42.83 4.04
1047 3895 1.672356 AGCAATCCCAGTCGCACAC 60.672 57.895 0.00 0.00 0.00 3.82
1136 3984 0.463654 AACAGAACAGCGAACAGGCA 60.464 50.000 0.00 0.00 34.64 4.75
1205 4053 2.202690 CACCGTTCGCCATCGCTA 60.203 61.111 0.00 0.00 35.26 4.26
1221 4069 2.190313 GGTGGCTGCGATCATCCA 59.810 61.111 0.00 0.00 36.24 3.41
1352 4200 2.543777 TCCAGCTTGAACACCTGTAC 57.456 50.000 0.00 0.00 0.00 2.90
1447 4297 8.862325 TTCAGTGACAAAATCCTACATTACAT 57.138 30.769 0.00 0.00 0.00 2.29
1520 4377 3.055458 TCAAGCGATGGACCAATCTGTAA 60.055 43.478 0.00 0.00 0.00 2.41
1524 4381 3.287867 AATCAAGCGATGGACCAATCT 57.712 42.857 0.00 0.00 30.13 2.40
1691 4548 7.816031 ACCAACATCATCAAATAAGAAAAGCAG 59.184 33.333 0.00 0.00 0.00 4.24
1713 4570 5.316167 AGTTAGACATCTTCATGCAACCAA 58.684 37.500 0.00 0.00 32.57 3.67
1733 4590 4.371681 ACCCCTCCATCTGTAATGTAGTT 58.628 43.478 0.00 0.00 0.00 2.24
1783 4641 2.472029 TCCTCTGGTTCATCCTCTTCC 58.528 52.381 0.00 0.00 37.07 3.46
1844 4702 3.084039 CACTGCCAATACACATCAGGTT 58.916 45.455 0.00 0.00 0.00 3.50
1855 4713 2.025981 AGGTGCATCTTCACTGCCAATA 60.026 45.455 0.00 0.00 38.89 1.90
1870 4728 6.176896 TGCTGTGATAACTAAATTAGGTGCA 58.823 36.000 0.00 0.00 0.00 4.57
1872 4730 8.492673 TTCTGCTGTGATAACTAAATTAGGTG 57.507 34.615 0.00 0.00 0.00 4.00
1877 4735 9.107177 CTCATCTTCTGCTGTGATAACTAAATT 57.893 33.333 0.00 0.00 0.00 1.82
1908 4784 5.392380 CCACTAGTCTGTTCATTTCCATTGC 60.392 44.000 0.00 0.00 0.00 3.56
1928 4804 1.949799 ATCTCTCCTCTTGCACCACT 58.050 50.000 0.00 0.00 0.00 4.00
1969 4845 3.218453 TGTGACCACACCACCTTTATTG 58.782 45.455 0.00 0.00 45.40 1.90
1999 4875 6.489700 TCACATTTTTCTTCAATGGACTGCTA 59.510 34.615 0.00 0.00 36.15 3.49
2080 4956 5.690865 ACAACTTCAGAAACTTGGGACATA 58.309 37.500 5.57 0.00 39.30 2.29
2154 5042 4.377431 CGACACTTTCAGAAATGGCAGTAC 60.377 45.833 0.00 0.00 0.00 2.73
2159 5047 1.266718 TGCGACACTTTCAGAAATGGC 59.733 47.619 0.00 0.00 0.00 4.40
2161 5049 3.885484 ACTGCGACACTTTCAGAAATG 57.115 42.857 0.00 0.57 0.00 2.32
2162 5050 4.632153 AGTACTGCGACACTTTCAGAAAT 58.368 39.130 0.00 0.00 0.00 2.17
2172 5060 4.789095 TTTTCAGAAAGTACTGCGACAC 57.211 40.909 0.00 0.00 37.75 3.67
2175 5063 5.747565 CAACATTTTCAGAAAGTACTGCGA 58.252 37.500 0.00 0.00 37.75 5.10
2176 5064 4.379793 GCAACATTTTCAGAAAGTACTGCG 59.620 41.667 0.00 0.00 37.75 5.18
2183 5071 6.929896 CAACTTCTGCAACATTTTCAGAAAG 58.070 36.000 5.57 3.47 43.60 2.62
2213 5102 8.484641 TCTGAGTCAAATGAATCTACAACATC 57.515 34.615 11.58 0.00 39.62 3.06
2220 5117 6.857437 TGTCCTCTGAGTCAAATGAATCTA 57.143 37.500 11.58 0.68 39.62 1.98
2320 5217 5.108187 TGGAATCTCTCATCCTTTTCCTG 57.892 43.478 0.00 0.00 36.64 3.86
2328 5225 4.070630 CACCTCTTGGAATCTCTCATCC 57.929 50.000 0.00 0.00 37.04 3.51
2414 5311 6.948309 TCAGATGATTCGAACTCCATATCCTA 59.052 38.462 0.00 0.00 0.00 2.94
2428 5325 5.240403 TGAGTAGACCTCATCAGATGATTCG 59.760 44.000 13.74 7.07 45.34 3.34
2485 5382 5.717119 ACCTAACATATTGGCTCTTCCTT 57.283 39.130 0.00 0.00 35.26 3.36
2497 5394 7.402071 TCAGAGTCAGGGTTAAACCTAACATAT 59.598 37.037 15.55 0.00 39.34 1.78
2536 5433 5.335976 GCTTCTAAAAACCATTCCCAGACTG 60.336 44.000 0.00 0.00 0.00 3.51
2542 5439 5.722021 TCTTGCTTCTAAAAACCATTCCC 57.278 39.130 0.00 0.00 0.00 3.97
2710 5607 8.733458 TCAAATGTGATGATTTGAAACCTAGAG 58.267 33.333 6.28 0.00 45.21 2.43
2858 5755 3.120786 GCAAACATTTCTTGCATCACTGC 60.121 43.478 2.79 0.00 46.78 4.40
2872 5769 9.491675 TTTGAAATTGATACATCAGCAAACATT 57.508 25.926 0.00 0.00 35.85 2.71
2938 5835 7.994425 TGTGTACTCATTTTTCATACCACAT 57.006 32.000 0.00 0.00 0.00 3.21
2995 5892 4.660938 GTGCTCCCCGGGTTGCTT 62.661 66.667 27.76 0.00 0.00 3.91
3004 5901 1.270550 CAAACAATCACTGTGCTCCCC 59.729 52.381 2.12 0.00 38.67 4.81
3017 5914 5.305128 TCTCTTTTGGATCCAAGCAAACAAT 59.695 36.000 25.69 0.00 37.24 2.71
3018 5915 4.648762 TCTCTTTTGGATCCAAGCAAACAA 59.351 37.500 25.69 15.55 37.24 2.83
3058 5955 7.324135 GCATTGAAACAAACATAAAATTGCTGG 59.676 33.333 0.00 0.00 0.00 4.85
3136 6033 2.494870 GCATGCTCCCTTGAAGAAACAT 59.505 45.455 11.37 0.00 0.00 2.71
3250 6147 1.005924 AGTCCAATAAACCAGGCCCAG 59.994 52.381 0.00 0.00 0.00 4.45
3393 6559 9.532697 GACAAATGTTAGCAGCAATTAAAAATG 57.467 29.630 0.00 0.00 0.00 2.32
3400 6566 5.972107 AGAGACAAATGTTAGCAGCAATT 57.028 34.783 0.00 0.00 0.00 2.32
3401 6567 5.972107 AAGAGACAAATGTTAGCAGCAAT 57.028 34.783 0.00 0.00 0.00 3.56
3796 7048 7.175347 TCTGTGCTCTTGAACTCTAACATAT 57.825 36.000 0.00 0.00 0.00 1.78
3817 7070 2.033801 CCAGTTGTCACTTTTGGCTCTG 59.966 50.000 0.00 0.00 33.18 3.35
4123 7378 0.813210 GCAGGAGGCAGTGCTCATAC 60.813 60.000 16.11 2.24 43.97 2.39
4140 7395 1.434188 TTCCTCTCCTTCAACAGGCA 58.566 50.000 0.00 0.00 43.55 4.75
4162 7417 1.906333 GTTTTGGGACACGGGCCAT 60.906 57.895 4.39 0.00 39.29 4.40
4168 7423 0.958876 GCCTAGGGTTTTGGGACACG 60.959 60.000 11.72 0.00 39.29 4.49
4291 7547 6.045318 AGATCCACAAGTTATCTGAATGACG 58.955 40.000 0.00 0.00 0.00 4.35
4293 7549 7.335171 CACAAGATCCACAAGTTATCTGAATGA 59.665 37.037 0.00 0.00 30.50 2.57
4441 7702 6.809689 TGCATAATTTCATTTGAACAGAGCAG 59.190 34.615 0.00 0.00 33.13 4.24
4499 7761 7.767250 AACCAAAAGGAAATTGAAACCAAAA 57.233 28.000 0.00 0.00 0.00 2.44
4500 7762 7.231519 ACAAACCAAAAGGAAATTGAAACCAAA 59.768 29.630 0.00 0.00 0.00 3.28
4501 7763 6.717084 ACAAACCAAAAGGAAATTGAAACCAA 59.283 30.769 0.00 0.00 0.00 3.67
4502 7764 6.241645 ACAAACCAAAAGGAAATTGAAACCA 58.758 32.000 0.00 0.00 0.00 3.67
4503 7765 6.751514 ACAAACCAAAAGGAAATTGAAACC 57.248 33.333 0.00 0.00 0.00 3.27
4504 7766 9.469807 AAAAACAAACCAAAAGGAAATTGAAAC 57.530 25.926 0.00 0.00 0.00 2.78
4542 7804 9.170584 GCAGATACTTTTGAAACTAAAGTTGTC 57.829 33.333 13.92 12.51 41.69 3.18
4543 7805 8.682710 TGCAGATACTTTTGAAACTAAAGTTGT 58.317 29.630 13.92 6.45 41.69 3.32
4544 7806 8.958043 GTGCAGATACTTTTGAAACTAAAGTTG 58.042 33.333 13.92 9.28 41.69 3.16
4545 7807 7.855904 CGTGCAGATACTTTTGAAACTAAAGTT 59.144 33.333 13.92 0.00 41.69 2.66
4546 7808 7.012044 ACGTGCAGATACTTTTGAAACTAAAGT 59.988 33.333 13.42 13.42 45.19 2.66
4547 7809 7.352739 ACGTGCAGATACTTTTGAAACTAAAG 58.647 34.615 0.00 0.00 38.32 1.85
4548 7810 7.254227 ACGTGCAGATACTTTTGAAACTAAA 57.746 32.000 0.00 0.00 0.00 1.85
4549 7811 6.854496 ACGTGCAGATACTTTTGAAACTAA 57.146 33.333 0.00 0.00 0.00 2.24
4550 7812 7.064134 CCATACGTGCAGATACTTTTGAAACTA 59.936 37.037 0.00 0.00 0.00 2.24
4551 7813 6.128282 CCATACGTGCAGATACTTTTGAAACT 60.128 38.462 0.00 0.00 0.00 2.66
4552 7814 6.021596 CCATACGTGCAGATACTTTTGAAAC 58.978 40.000 0.00 0.00 0.00 2.78
4553 7815 5.391523 GCCATACGTGCAGATACTTTTGAAA 60.392 40.000 0.00 0.00 0.00 2.69
4554 7816 4.094294 GCCATACGTGCAGATACTTTTGAA 59.906 41.667 0.00 0.00 0.00 2.69
4555 7817 3.621268 GCCATACGTGCAGATACTTTTGA 59.379 43.478 0.00 0.00 0.00 2.69
4556 7818 3.373748 TGCCATACGTGCAGATACTTTTG 59.626 43.478 0.00 0.00 34.05 2.44
4557 7819 3.374058 GTGCCATACGTGCAGATACTTTT 59.626 43.478 0.00 0.00 39.87 2.27
4558 7820 2.936498 GTGCCATACGTGCAGATACTTT 59.064 45.455 0.00 0.00 39.87 2.66
4559 7821 2.168521 AGTGCCATACGTGCAGATACTT 59.831 45.455 0.00 0.00 39.87 2.24
4560 7822 1.757118 AGTGCCATACGTGCAGATACT 59.243 47.619 0.00 0.00 39.87 2.12
4561 7823 2.225068 AGTGCCATACGTGCAGATAC 57.775 50.000 0.00 0.00 39.87 2.24
4562 7824 2.979814 AAGTGCCATACGTGCAGATA 57.020 45.000 0.00 0.00 39.87 1.98
4563 7825 2.979814 TAAGTGCCATACGTGCAGAT 57.020 45.000 0.00 0.00 39.87 2.90
4564 7826 2.979814 ATAAGTGCCATACGTGCAGA 57.020 45.000 0.00 0.00 39.87 4.26
4565 7827 5.673337 AATAATAAGTGCCATACGTGCAG 57.327 39.130 0.00 0.00 39.87 4.41
4566 7828 5.220951 CCAAATAATAAGTGCCATACGTGCA 60.221 40.000 0.00 0.00 36.12 4.57
4567 7829 5.212194 CCAAATAATAAGTGCCATACGTGC 58.788 41.667 0.00 0.00 0.00 5.34
4568 7830 5.298276 ACCCAAATAATAAGTGCCATACGTG 59.702 40.000 0.00 0.00 0.00 4.49
4569 7831 5.442391 ACCCAAATAATAAGTGCCATACGT 58.558 37.500 0.00 0.00 0.00 3.57
4570 7832 6.385649 AACCCAAATAATAAGTGCCATACG 57.614 37.500 0.00 0.00 0.00 3.06
4571 7833 7.865889 GCTAAACCCAAATAATAAGTGCCATAC 59.134 37.037 0.00 0.00 0.00 2.39
4572 7834 7.561722 TGCTAAACCCAAATAATAAGTGCCATA 59.438 33.333 0.00 0.00 0.00 2.74
4573 7835 6.382570 TGCTAAACCCAAATAATAAGTGCCAT 59.617 34.615 0.00 0.00 0.00 4.40
4574 7836 5.717178 TGCTAAACCCAAATAATAAGTGCCA 59.283 36.000 0.00 0.00 0.00 4.92
4575 7837 6.215495 TGCTAAACCCAAATAATAAGTGCC 57.785 37.500 0.00 0.00 0.00 5.01
4576 7838 7.543756 TCTTGCTAAACCCAAATAATAAGTGC 58.456 34.615 0.00 0.00 0.00 4.40
4577 7839 7.702348 GCTCTTGCTAAACCCAAATAATAAGTG 59.298 37.037 0.00 0.00 36.03 3.16
4578 7840 7.415206 CGCTCTTGCTAAACCCAAATAATAAGT 60.415 37.037 0.00 0.00 36.97 2.24
4579 7841 6.912591 CGCTCTTGCTAAACCCAAATAATAAG 59.087 38.462 0.00 0.00 36.97 1.73
4580 7842 6.679392 GCGCTCTTGCTAAACCCAAATAATAA 60.679 38.462 0.00 0.00 36.97 1.40
4581 7843 5.220970 GCGCTCTTGCTAAACCCAAATAATA 60.221 40.000 0.00 0.00 36.97 0.98
4582 7844 4.440112 GCGCTCTTGCTAAACCCAAATAAT 60.440 41.667 0.00 0.00 36.97 1.28
4583 7845 3.119637 GCGCTCTTGCTAAACCCAAATAA 60.120 43.478 0.00 0.00 36.97 1.40
4584 7846 2.422127 GCGCTCTTGCTAAACCCAAATA 59.578 45.455 0.00 0.00 36.97 1.40
4585 7847 1.202348 GCGCTCTTGCTAAACCCAAAT 59.798 47.619 0.00 0.00 36.97 2.32
4586 7848 0.596082 GCGCTCTTGCTAAACCCAAA 59.404 50.000 0.00 0.00 36.97 3.28
4587 7849 0.536233 TGCGCTCTTGCTAAACCCAA 60.536 50.000 9.73 0.00 36.97 4.12
4588 7850 0.536233 TTGCGCTCTTGCTAAACCCA 60.536 50.000 9.73 0.00 36.97 4.51
4589 7851 0.596082 TTTGCGCTCTTGCTAAACCC 59.404 50.000 9.73 0.00 36.97 4.11
4590 7852 2.095263 TGATTTGCGCTCTTGCTAAACC 60.095 45.455 9.73 0.00 33.55 3.27
4591 7853 3.201726 TGATTTGCGCTCTTGCTAAAC 57.798 42.857 9.73 0.00 33.55 2.01
4592 7854 4.875536 TCTATGATTTGCGCTCTTGCTAAA 59.124 37.500 9.73 0.00 33.55 1.85
4593 7855 4.441792 TCTATGATTTGCGCTCTTGCTAA 58.558 39.130 9.73 0.00 36.97 3.09
4594 7856 4.058721 TCTATGATTTGCGCTCTTGCTA 57.941 40.909 9.73 0.00 36.97 3.49
4595 7857 2.910199 TCTATGATTTGCGCTCTTGCT 58.090 42.857 9.73 0.00 36.97 3.91
4596 7858 3.680642 TTCTATGATTTGCGCTCTTGC 57.319 42.857 9.73 0.00 0.00 4.01
4597 7859 7.182361 TCTATTTCTATGATTTGCGCTCTTG 57.818 36.000 9.73 0.00 0.00 3.02
4598 7860 7.712639 TCTTCTATTTCTATGATTTGCGCTCTT 59.287 33.333 9.73 0.00 0.00 2.85
4599 7861 7.212976 TCTTCTATTTCTATGATTTGCGCTCT 58.787 34.615 9.73 0.00 0.00 4.09
4600 7862 7.413475 TCTTCTATTTCTATGATTTGCGCTC 57.587 36.000 9.73 0.00 0.00 5.03
4601 7863 7.792374 TTCTTCTATTTCTATGATTTGCGCT 57.208 32.000 9.73 0.00 0.00 5.92
4602 7864 8.841444 TTTTCTTCTATTTCTATGATTTGCGC 57.159 30.769 0.00 0.00 0.00 6.09
4625 7887 6.884280 AGTCATGATCTTTTCCGACTTTTT 57.116 33.333 0.00 0.00 34.22 1.94
4626 7888 6.934645 TGTAGTCATGATCTTTTCCGACTTTT 59.065 34.615 0.00 0.00 37.33 2.27
4627 7889 6.464222 TGTAGTCATGATCTTTTCCGACTTT 58.536 36.000 0.00 0.00 37.33 2.66
4628 7890 6.037786 TGTAGTCATGATCTTTTCCGACTT 57.962 37.500 0.00 0.00 37.33 3.01
4629 7891 5.419155 TCTGTAGTCATGATCTTTTCCGACT 59.581 40.000 0.00 0.00 38.75 4.18
4630 7892 5.651530 TCTGTAGTCATGATCTTTTCCGAC 58.348 41.667 0.00 0.00 0.00 4.79
4631 7893 5.419155 ACTCTGTAGTCATGATCTTTTCCGA 59.581 40.000 0.00 0.00 0.00 4.55
4632 7894 5.518128 CACTCTGTAGTCATGATCTTTTCCG 59.482 44.000 0.00 0.00 31.97 4.30
4633 7895 6.634805 TCACTCTGTAGTCATGATCTTTTCC 58.365 40.000 0.00 0.00 31.97 3.13
4634 7896 7.319646 ACTCACTCTGTAGTCATGATCTTTTC 58.680 38.462 0.00 0.00 31.97 2.29
4635 7897 7.238486 ACTCACTCTGTAGTCATGATCTTTT 57.762 36.000 0.00 0.00 31.97 2.27
4636 7898 6.849085 ACTCACTCTGTAGTCATGATCTTT 57.151 37.500 0.00 0.00 31.97 2.52
4637 7899 7.116075 ACTACTCACTCTGTAGTCATGATCTT 58.884 38.462 0.00 0.00 44.93 2.40
4638 7900 6.658849 ACTACTCACTCTGTAGTCATGATCT 58.341 40.000 0.00 0.68 44.93 2.75
4639 7901 6.935741 ACTACTCACTCTGTAGTCATGATC 57.064 41.667 0.00 0.00 44.93 2.92
4640 7902 7.339482 TGTACTACTCACTCTGTAGTCATGAT 58.661 38.462 9.42 0.00 44.93 2.45
4641 7903 6.708285 TGTACTACTCACTCTGTAGTCATGA 58.292 40.000 9.42 0.00 44.93 3.07
4642 7904 6.819146 TCTGTACTACTCACTCTGTAGTCATG 59.181 42.308 9.42 0.00 44.93 3.07
4643 7905 6.819649 GTCTGTACTACTCACTCTGTAGTCAT 59.180 42.308 9.42 0.00 44.93 3.06
4644 7906 6.164876 GTCTGTACTACTCACTCTGTAGTCA 58.835 44.000 9.42 7.53 44.93 3.41
4645 7907 5.581874 GGTCTGTACTACTCACTCTGTAGTC 59.418 48.000 9.42 4.09 44.93 2.59
4647 7909 4.567558 CGGTCTGTACTACTCACTCTGTAG 59.432 50.000 0.00 0.00 42.07 2.74
4648 7910 4.221482 TCGGTCTGTACTACTCACTCTGTA 59.779 45.833 0.00 0.00 0.00 2.74
4649 7911 3.007723 TCGGTCTGTACTACTCACTCTGT 59.992 47.826 0.00 0.00 0.00 3.41
4650 7912 3.597255 TCGGTCTGTACTACTCACTCTG 58.403 50.000 0.00 0.00 0.00 3.35
4651 7913 3.977134 TCGGTCTGTACTACTCACTCT 57.023 47.619 0.00 0.00 0.00 3.24
4652 7914 3.242804 GCATCGGTCTGTACTACTCACTC 60.243 52.174 0.00 0.00 0.00 3.51
4653 7915 2.683867 GCATCGGTCTGTACTACTCACT 59.316 50.000 0.00 0.00 0.00 3.41
4654 7916 2.223525 GGCATCGGTCTGTACTACTCAC 60.224 54.545 0.00 0.00 0.00 3.51
4655 7917 2.022195 GGCATCGGTCTGTACTACTCA 58.978 52.381 0.00 0.00 0.00 3.41
4656 7918 1.002684 CGGCATCGGTCTGTACTACTC 60.003 57.143 0.00 0.00 0.00 2.59
4657 7919 1.022735 CGGCATCGGTCTGTACTACT 58.977 55.000 0.00 0.00 0.00 2.57
4658 7920 3.546407 CGGCATCGGTCTGTACTAC 57.454 57.895 0.00 0.00 0.00 2.73
4669 7931 2.716828 CTATTACGCGCCGGCATCG 61.717 63.158 29.14 29.14 39.92 3.84
4670 7932 1.372499 TCTATTACGCGCCGGCATC 60.372 57.895 28.98 16.58 39.92 3.91
4671 7933 1.663702 GTCTATTACGCGCCGGCAT 60.664 57.895 28.98 14.62 39.92 4.40
4672 7934 2.278989 GTCTATTACGCGCCGGCA 60.279 61.111 28.98 6.55 39.92 5.69
4673 7935 3.392440 CGTCTATTACGCGCCGGC 61.392 66.667 19.07 19.07 46.10 6.13
4681 7943 0.460635 TGTTGGCCGCCGTCTATTAC 60.461 55.000 4.58 0.00 0.00 1.89
4682 7944 0.179094 CTGTTGGCCGCCGTCTATTA 60.179 55.000 4.58 0.00 0.00 0.98
4683 7945 1.449601 CTGTTGGCCGCCGTCTATT 60.450 57.895 4.58 0.00 0.00 1.73
4684 7946 2.186903 CTGTTGGCCGCCGTCTAT 59.813 61.111 4.58 0.00 0.00 1.98
4685 7947 4.752879 GCTGTTGGCCGCCGTCTA 62.753 66.667 4.58 0.00 34.27 2.59
4752 8016 1.194781 ATGACCCTCTGTTCCGCAGT 61.195 55.000 0.00 0.00 45.23 4.40
4766 8030 2.420687 GGTGAGGTTGGAGATGATGACC 60.421 54.545 0.00 0.00 0.00 4.02
4770 8034 1.216990 GGGGTGAGGTTGGAGATGAT 58.783 55.000 0.00 0.00 0.00 2.45
4780 8044 3.157680 CTTGAACGGGGGTGAGGT 58.842 61.111 0.00 0.00 0.00 3.85
4783 8047 0.536460 GAAAGCTTGAACGGGGGTGA 60.536 55.000 0.00 0.00 0.00 4.02
4797 8061 1.743252 CGGTGCTGGAGAGGAAAGC 60.743 63.158 0.00 0.00 37.46 3.51
4799 8063 3.068881 CCGGTGCTGGAGAGGAAA 58.931 61.111 0.00 0.00 0.00 3.13
4836 8100 1.686741 GGAGGACGAGGAGTTCTGGAT 60.687 57.143 0.00 0.00 39.26 3.41
4837 8101 0.323542 GGAGGACGAGGAGTTCTGGA 60.324 60.000 0.00 0.00 39.26 3.86
4919 8183 1.074319 CGTCGTTGTACCCATGTCGG 61.074 60.000 0.00 0.00 0.00 4.79
4943 8207 2.049802 GCGAACAAGGTCGACGGA 60.050 61.111 12.27 0.00 43.86 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.