Multiple sequence alignment - TraesCS7B01G413700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G413700 chr7B 100.000 5516 0 0 1 5516 681795132 681789617 0.000000e+00 10187.0
1 TraesCS7B01G413700 chr7B 86.418 670 62 20 4861 5516 682743388 682744042 0.000000e+00 706.0
2 TraesCS7B01G413700 chr7B 90.476 126 12 0 1 126 32412940 32413065 3.420000e-37 167.0
3 TraesCS7B01G413700 chr7B 94.737 57 2 1 74 129 640506834 640506778 2.740000e-13 87.9
4 TraesCS7B01G413700 chr7A 86.918 4166 361 86 1444 5516 693845097 693841023 0.000000e+00 4505.0
5 TraesCS7B01G413700 chr7A 88.258 792 58 12 656 1441 693846021 693845259 0.000000e+00 915.0
6 TraesCS7B01G413700 chr7A 83.377 379 45 11 5139 5516 694036484 694036845 8.850000e-88 335.0
7 TraesCS7B01G413700 chr7A 84.259 108 17 0 4375 4482 694031938 694032045 7.560000e-19 106.0
8 TraesCS7B01G413700 chr7A 83.036 112 7 4 5008 5118 694035755 694035855 2.120000e-14 91.6
9 TraesCS7B01G413700 chr7D 94.039 822 40 8 1444 2263 602079237 602078423 0.000000e+00 1238.0
10 TraesCS7B01G413700 chr7D 89.447 796 69 7 2336 3130 602078388 602077607 0.000000e+00 990.0
11 TraesCS7B01G413700 chr7D 86.940 781 63 16 4750 5516 602076338 602075583 0.000000e+00 841.0
12 TraesCS7B01G413700 chr7D 93.097 507 35 0 4022 4528 602076941 602076435 0.000000e+00 743.0
13 TraesCS7B01G413700 chr7D 85.185 702 58 23 761 1448 602080066 602079397 0.000000e+00 678.0
14 TraesCS7B01G413700 chr7D 89.157 498 52 2 3410 3905 602077543 602077046 2.180000e-173 619.0
15 TraesCS7B01G413700 chr7D 81.794 758 81 29 1 714 602080806 602080062 2.860000e-162 582.0
16 TraesCS7B01G413700 chr7D 86.667 390 23 11 1 365 602082525 602082140 6.650000e-109 405.0
17 TraesCS7B01G413700 chr7D 83.862 378 45 9 5139 5516 602262507 602262868 4.090000e-91 346.0
18 TraesCS7B01G413700 chr7D 95.575 113 4 1 4618 4729 602076441 602076329 4.390000e-41 180.0
19 TraesCS7B01G413700 chrUn 88.112 858 67 18 4675 5516 87248996 87249834 0.000000e+00 987.0
20 TraesCS7B01G413700 chrUn 88.112 858 67 18 4675 5516 235064855 235065693 0.000000e+00 987.0
21 TraesCS7B01G413700 chrUn 91.176 680 48 4 3997 4665 87246002 87246680 0.000000e+00 913.0
22 TraesCS7B01G413700 chrUn 85.835 593 57 13 4936 5516 87255463 87256040 6.110000e-169 604.0
23 TraesCS7B01G413700 chrUn 85.835 593 57 13 4936 5516 235071322 235071899 6.110000e-169 604.0
24 TraesCS7B01G413700 chrUn 89.567 393 32 5 3400 3785 87264030 87263640 1.790000e-134 490.0
25 TraesCS7B01G413700 chrUn 95.238 126 6 0 1 126 223002174 223002299 3.370000e-47 200.0
26 TraesCS7B01G413700 chrUn 94.574 129 7 0 1 129 342981529 342981401 3.370000e-47 200.0
27 TraesCS7B01G413700 chrUn 89.076 119 5 3 3056 3166 87264205 87264087 2.070000e-29 141.0
28 TraesCS7B01G413700 chr3D 95.238 126 6 0 1 126 29493827 29493952 3.370000e-47 200.0
29 TraesCS7B01G413700 chr3D 95.238 126 6 0 1 126 29528756 29528881 3.370000e-47 200.0
30 TraesCS7B01G413700 chr3D 95.238 126 6 0 1 126 29565696 29565821 3.370000e-47 200.0
31 TraesCS7B01G413700 chr3D 95.238 126 6 0 1 126 29581280 29581405 3.370000e-47 200.0
32 TraesCS7B01G413700 chr3D 90.164 122 12 0 1 122 572490427 572490548 5.720000e-35 159.0
33 TraesCS7B01G413700 chr3D 88.889 45 4 1 139 182 453158881 453158837 3.000000e-03 54.7
34 TraesCS7B01G413700 chr2A 95.238 126 6 0 1 126 69301254 69301379 3.370000e-47 200.0
35 TraesCS7B01G413700 chr2A 93.478 46 1 2 139 182 69301412 69301457 3.570000e-07 67.6
36 TraesCS7B01G413700 chr5D 90.780 141 12 1 1 140 348517171 348517031 2.620000e-43 187.0
37 TraesCS7B01G413700 chr5A 82.547 212 26 8 1937 2140 109289906 109290114 5.680000e-40 176.0
38 TraesCS7B01G413700 chr5A 81.604 212 28 8 1937 2140 134326619 134326827 1.230000e-36 165.0
39 TraesCS7B01G413700 chr1D 88.550 131 14 1 1 130 463861983 463861853 2.060000e-34 158.0
40 TraesCS7B01G413700 chr6D 88.889 117 12 1 14 129 32646432 32646548 5.760000e-30 143.0
41 TraesCS7B01G413700 chr3A 85.124 121 13 3 7 126 20410818 20410702 9.710000e-23 119.0
42 TraesCS7B01G413700 chr2B 83.206 131 20 2 1 130 716771977 716772106 9.710000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G413700 chr7B 681789617 681795132 5515 True 10187.000000 10187 100.000000 1 5516 1 chr7B.!!$R2 5515
1 TraesCS7B01G413700 chr7B 682743388 682744042 654 False 706.000000 706 86.418000 4861 5516 1 chr7B.!!$F2 655
2 TraesCS7B01G413700 chr7A 693841023 693846021 4998 True 2710.000000 4505 87.588000 656 5516 2 chr7A.!!$R1 4860
3 TraesCS7B01G413700 chr7D 602075583 602082525 6942 True 697.333333 1238 89.100111 1 5516 9 chr7D.!!$R1 5515
4 TraesCS7B01G413700 chrUn 235064855 235065693 838 False 987.000000 987 88.112000 4675 5516 1 chrUn.!!$F3 841
5 TraesCS7B01G413700 chrUn 87246002 87249834 3832 False 950.000000 987 89.644000 3997 5516 2 chrUn.!!$F5 1519
6 TraesCS7B01G413700 chrUn 87255463 87256040 577 False 604.000000 604 85.835000 4936 5516 1 chrUn.!!$F1 580
7 TraesCS7B01G413700 chrUn 235071322 235071899 577 False 604.000000 604 85.835000 4936 5516 1 chrUn.!!$F4 580
8 TraesCS7B01G413700 chrUn 87263640 87264205 565 True 315.500000 490 89.321500 3056 3785 2 chrUn.!!$R2 729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 2173 0.114364 TGAGGCGAGGGGAGCATATA 59.886 55.0 0.00 0.00 36.08 0.86 F
1455 3246 0.249155 GTCAACCGTCCGACTTGACA 60.249 55.0 20.66 0.00 42.22 3.58 F
2174 4133 0.387622 CCGGTGTTCTGCATGCAAAG 60.388 55.0 22.88 11.39 0.00 2.77 F
3864 5875 0.170339 CATGACTACGTCAGCACCGA 59.830 55.0 0.00 0.00 46.04 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1905 3864 0.390124 CACAGTGCCAAACCAGCATT 59.610 50.0 0.0 0.0 43.29 3.56 R
2515 4474 0.392998 CCAGCACGGCACCTTTCTAT 60.393 55.0 0.0 0.0 0.00 1.98 R
3906 5917 0.179015 TTAGCGGCCTTGGTGTTGAA 60.179 50.0 0.0 0.0 0.00 2.69 R
5309 9740 0.038251 GTGGACTGATGAGTGCGTCA 60.038 55.0 0.0 0.0 43.32 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.476752 CAGTCTAATTGCAGCCTCTTTAC 57.523 43.478 0.00 0.00 0.00 2.01
34 35 3.323979 AGCCTCTTTACCGAAGTCTTTGA 59.676 43.478 0.93 0.00 36.70 2.69
79 80 1.505425 ACCGCGAAGAAGGTGTTTAC 58.495 50.000 8.23 0.00 38.54 2.01
81 82 1.193874 CCGCGAAGAAGGTGTTTACAC 59.806 52.381 8.23 4.43 45.72 2.90
306 2047 5.122707 ACCCAACCCAAACAATGAAAAAT 57.877 34.783 0.00 0.00 0.00 1.82
333 2074 7.500892 GGACAAAAGAAAACCAACCCAATAAAT 59.499 33.333 0.00 0.00 0.00 1.40
335 2076 9.907229 ACAAAAGAAAACCAACCCAATAAATTA 57.093 25.926 0.00 0.00 0.00 1.40
367 2109 6.704493 GGATAAAGAAAACACAGGAAAAACCC 59.296 38.462 0.00 0.00 40.05 4.11
377 2119 2.359531 CAGGAAAAACCCGCACAAACTA 59.640 45.455 0.00 0.00 40.05 2.24
379 2121 2.544277 GGAAAAACCCGCACAAACTACC 60.544 50.000 0.00 0.00 0.00 3.18
413 2155 3.792047 CATGTCGTGCCACGCCTG 61.792 66.667 13.39 7.38 42.21 4.85
415 2157 3.939837 ATGTCGTGCCACGCCTGAG 62.940 63.158 13.39 0.00 42.21 3.35
428 2170 3.160047 CTGAGGCGAGGGGAGCAT 61.160 66.667 0.00 0.00 36.08 3.79
430 2172 1.152247 TGAGGCGAGGGGAGCATAT 60.152 57.895 0.00 0.00 36.08 1.78
431 2173 0.114364 TGAGGCGAGGGGAGCATATA 59.886 55.000 0.00 0.00 36.08 0.86
432 2174 1.273267 TGAGGCGAGGGGAGCATATAT 60.273 52.381 0.00 0.00 36.08 0.86
433 2175 2.024369 TGAGGCGAGGGGAGCATATATA 60.024 50.000 0.00 0.00 36.08 0.86
434 2176 2.625790 GAGGCGAGGGGAGCATATATAG 59.374 54.545 0.00 0.00 36.08 1.31
435 2177 1.069358 GGCGAGGGGAGCATATATAGC 59.931 57.143 0.00 0.00 36.08 2.97
436 2178 2.035632 GCGAGGGGAGCATATATAGCT 58.964 52.381 8.75 8.75 46.82 3.32
479 2221 1.094073 AAGATGCGCCATGTGCTCTC 61.094 55.000 4.18 5.76 40.03 3.20
487 2229 3.862264 GCGCCATGTGCTCTCAGAATATA 60.862 47.826 0.00 0.00 38.05 0.86
488 2230 4.502016 CGCCATGTGCTCTCAGAATATAT 58.498 43.478 4.92 0.00 38.05 0.86
493 2235 5.233083 TGTGCTCTCAGAATATATTGGGG 57.767 43.478 1.78 0.00 0.00 4.96
494 2236 4.006319 GTGCTCTCAGAATATATTGGGGC 58.994 47.826 1.78 2.96 0.00 5.80
496 2238 4.352001 TGCTCTCAGAATATATTGGGGCTT 59.648 41.667 1.78 0.00 0.00 4.35
497 2239 5.547666 TGCTCTCAGAATATATTGGGGCTTA 59.452 40.000 1.78 0.00 0.00 3.09
498 2240 6.112058 GCTCTCAGAATATATTGGGGCTTAG 58.888 44.000 1.78 0.00 0.00 2.18
499 2241 6.070538 GCTCTCAGAATATATTGGGGCTTAGA 60.071 42.308 1.78 0.06 0.00 2.10
502 2244 8.723365 TCTCAGAATATATTGGGGCTTAGAAAA 58.277 33.333 1.78 0.00 0.00 2.29
522 2267 4.877323 AAAACCTGACTCGTTTCTCAAC 57.123 40.909 0.00 0.00 32.33 3.18
524 2269 3.536956 ACCTGACTCGTTTCTCAACAA 57.463 42.857 0.00 0.00 32.54 2.83
529 2274 5.064707 CCTGACTCGTTTCTCAACAAAGAAA 59.935 40.000 0.00 0.00 41.70 2.52
530 2275 6.106877 TGACTCGTTTCTCAACAAAGAAAG 57.893 37.500 0.00 0.00 43.88 2.62
535 2280 6.551736 TCGTTTCTCAACAAAGAAAGAAAGG 58.448 36.000 9.08 9.08 43.88 3.11
547 2292 8.585018 ACAAAGAAAGAAAGGAAAAGAAGAACA 58.415 29.630 0.00 0.00 0.00 3.18
549 2294 9.591792 AAAGAAAGAAAGGAAAAGAAGAACATG 57.408 29.630 0.00 0.00 0.00 3.21
557 2302 7.032377 AGGAAAAGAAGAACATGTCACTTTC 57.968 36.000 15.87 10.14 35.53 2.62
558 2303 6.603201 AGGAAAAGAAGAACATGTCACTTTCA 59.397 34.615 15.87 0.00 35.53 2.69
582 2327 6.000840 AGAAATGAAAGAGTGGAAGGAAGAC 58.999 40.000 0.00 0.00 0.00 3.01
584 2329 4.073293 TGAAAGAGTGGAAGGAAGACAC 57.927 45.455 0.00 0.00 35.43 3.67
593 2338 2.419297 GGAAGGAAGACACGAGATGCAT 60.419 50.000 0.00 0.00 0.00 3.96
594 2339 2.593346 AGGAAGACACGAGATGCATC 57.407 50.000 19.37 19.37 0.00 3.91
595 2340 2.106566 AGGAAGACACGAGATGCATCT 58.893 47.619 29.09 29.09 40.50 2.90
620 2377 3.178267 GCTTTGCTTTTTGGTTTTTGCC 58.822 40.909 0.00 0.00 0.00 4.52
630 2387 3.025322 TGGTTTTTGCCTGAGGAGAAA 57.975 42.857 0.65 0.00 0.00 2.52
631 2388 3.575805 TGGTTTTTGCCTGAGGAGAAAT 58.424 40.909 0.65 0.00 0.00 2.17
636 2393 3.650281 TTGCCTGAGGAGAAATGCATA 57.350 42.857 0.65 0.00 0.00 3.14
649 2406 7.767198 AGGAGAAATGCATATTCCAAAAATGTG 59.233 33.333 20.06 0.00 0.00 3.21
651 2408 6.316890 AGAAATGCATATTCCAAAAATGTGCC 59.683 34.615 14.28 2.63 41.95 5.01
653 2410 2.865551 GCATATTCCAAAAATGTGCCGG 59.134 45.455 0.00 0.00 38.36 6.13
654 2411 3.456280 CATATTCCAAAAATGTGCCGGG 58.544 45.455 2.18 0.00 0.00 5.73
709 2472 4.238514 CGAAGGAAGAAACCTAGACACAG 58.761 47.826 0.00 0.00 39.62 3.66
714 2477 5.712917 AGGAAGAAACCTAGACACAGAGTAG 59.287 44.000 0.00 0.00 38.65 2.57
737 2500 9.694137 GTAGTACTCAGAAAGCTCTAAAGAAAA 57.306 33.333 0.00 0.00 0.00 2.29
763 2526 5.485708 AGGCCTGTAGTTTCTTATCTCAAGT 59.514 40.000 3.11 0.00 0.00 3.16
767 2530 8.657729 GCCTGTAGTTTCTTATCTCAAGTAAAC 58.342 37.037 0.00 0.00 0.00 2.01
796 2559 7.747357 GCGCAATTTGATCAAATTTGAAGAAAT 59.253 29.630 33.67 23.24 45.67 2.17
843 2606 4.630894 ACTTCACAGCGTTTGATTTGAA 57.369 36.364 0.00 0.00 0.00 2.69
844 2607 5.186996 ACTTCACAGCGTTTGATTTGAAT 57.813 34.783 0.00 0.00 0.00 2.57
845 2608 5.591099 ACTTCACAGCGTTTGATTTGAATT 58.409 33.333 0.00 0.00 0.00 2.17
846 2609 6.042143 ACTTCACAGCGTTTGATTTGAATTT 58.958 32.000 0.00 0.00 0.00 1.82
847 2610 6.534793 ACTTCACAGCGTTTGATTTGAATTTT 59.465 30.769 0.00 0.00 0.00 1.82
848 2611 6.271396 TCACAGCGTTTGATTTGAATTTTG 57.729 33.333 0.00 0.00 0.00 2.44
849 2612 6.038985 TCACAGCGTTTGATTTGAATTTTGA 58.961 32.000 0.00 0.00 0.00 2.69
850 2613 6.019961 TCACAGCGTTTGATTTGAATTTTGAC 60.020 34.615 0.00 0.00 0.00 3.18
873 2636 2.003937 AAAATTTACAGGGCCGTGGT 57.996 45.000 28.01 16.17 0.00 4.16
874 2637 2.883122 AAATTTACAGGGCCGTGGTA 57.117 45.000 28.01 15.23 0.00 3.25
875 2638 2.413310 AATTTACAGGGCCGTGGTAG 57.587 50.000 28.01 4.64 0.00 3.18
898 2661 0.322277 CACAGCAGGATGACTTGGCT 60.322 55.000 0.00 0.00 39.69 4.75
918 2681 3.111875 TCCCTTGGATTCTCTCCGGGA 62.112 57.143 0.00 0.00 46.20 5.14
925 2688 0.688087 ATTCTCTCCGGGACCCACTC 60.688 60.000 12.15 0.00 0.00 3.51
926 2689 2.760385 CTCTCCGGGACCCACTCC 60.760 72.222 12.15 0.00 38.55 3.85
933 2696 3.009714 GGACCCACTCCCCACTCC 61.010 72.222 0.00 0.00 31.83 3.85
934 2697 3.009714 GACCCACTCCCCACTCCC 61.010 72.222 0.00 0.00 0.00 4.30
935 2698 4.677151 ACCCACTCCCCACTCCCC 62.677 72.222 0.00 0.00 0.00 4.81
936 2699 4.675303 CCCACTCCCCACTCCCCA 62.675 72.222 0.00 0.00 0.00 4.96
937 2700 3.330720 CCACTCCCCACTCCCCAC 61.331 72.222 0.00 0.00 0.00 4.61
938 2701 2.203998 CACTCCCCACTCCCCACT 60.204 66.667 0.00 0.00 0.00 4.00
1244 3035 3.148279 GTCCTCGCCGTGGATCCT 61.148 66.667 14.23 0.00 35.87 3.24
1279 3070 1.227292 GGGCTTCGGTTCCTCGATC 60.227 63.158 0.00 0.00 39.03 3.69
1288 3079 3.350909 TTCCTCGATCACCACGCCG 62.351 63.158 0.00 0.00 0.00 6.46
1318 3109 3.050619 CGATGTGTAGGATAAGGCGTTC 58.949 50.000 0.00 0.00 0.00 3.95
1400 3191 6.393720 AATGCAAATGCGTTCTGAATTAAC 57.606 33.333 7.02 0.00 46.36 2.01
1441 3232 1.949257 CTTTGCCTGTCCGGTCAAC 59.051 57.895 0.00 0.00 31.50 3.18
1452 3243 3.946907 GGTCAACCGTCCGACTTG 58.053 61.111 0.00 0.00 32.57 3.16
1453 3244 1.364901 GGTCAACCGTCCGACTTGA 59.635 57.895 0.00 0.00 32.57 3.02
1454 3245 0.942884 GGTCAACCGTCCGACTTGAC 60.943 60.000 18.70 18.70 42.02 3.18
1455 3246 0.249155 GTCAACCGTCCGACTTGACA 60.249 55.000 20.66 0.00 42.22 3.58
1456 3247 0.249155 TCAACCGTCCGACTTGACAC 60.249 55.000 0.00 0.00 34.88 3.67
1516 3473 8.202137 TCTGTTTATATGTTACTCCTACTTGCC 58.798 37.037 0.00 0.00 0.00 4.52
1519 3476 8.827677 GTTTATATGTTACTCCTACTTGCCTTG 58.172 37.037 0.00 0.00 0.00 3.61
1537 3494 5.647658 TGCCTTGTTGATAGTTTGATACAGG 59.352 40.000 0.00 0.00 0.00 4.00
1541 3498 8.400947 CCTTGTTGATAGTTTGATACAGGATTG 58.599 37.037 0.00 0.00 0.00 2.67
1542 3499 8.862325 TTGTTGATAGTTTGATACAGGATTGT 57.138 30.769 0.00 0.00 41.39 2.71
1548 3505 6.365970 AGTTTGATACAGGATTGTCTGACT 57.634 37.500 9.51 0.00 38.76 3.41
1632 3589 1.798735 CCTTGACATCCTTGCGCAG 59.201 57.895 11.31 4.92 0.00 5.18
1706 3663 2.653448 CGAGAGCGACATGGCGAG 60.653 66.667 28.68 5.74 40.82 5.03
1785 3742 2.978156 AGGTCAAAATCAGGCAAGGA 57.022 45.000 0.00 0.00 0.00 3.36
1846 3803 6.892658 TTACAGTGATTTTTGTGCCATAGT 57.107 33.333 0.00 0.00 0.00 2.12
1891 3848 6.791867 TCAGTGAATAGCAACATAGGTAGT 57.208 37.500 0.00 0.00 0.00 2.73
1892 3849 7.891498 TCAGTGAATAGCAACATAGGTAGTA 57.109 36.000 0.00 0.00 0.00 1.82
1897 3856 6.929049 TGAATAGCAACATAGGTAGTACATGC 59.071 38.462 2.06 3.06 0.00 4.06
1905 3864 6.075315 ACATAGGTAGTACATGCCAGTGATA 58.925 40.000 2.06 0.00 35.79 2.15
1953 3912 1.324740 GCCATGGGAGCATTCAAGCA 61.325 55.000 15.13 0.00 36.85 3.91
2022 3981 9.903682 CACAGAAGTCTGATTCATTTTGTTAAT 57.096 29.630 15.15 0.00 46.59 1.40
2159 4118 2.383601 GGATTGGTGGGGATCCGGT 61.384 63.158 5.45 0.00 33.12 5.28
2174 4133 0.387622 CCGGTGTTCTGCATGCAAAG 60.388 55.000 22.88 11.39 0.00 2.77
2267 4226 7.660208 CAGGTATACTGGAAAGTAAACTGTTGT 59.340 37.037 2.25 0.00 43.70 3.32
2268 4227 8.873144 AGGTATACTGGAAAGTAAACTGTTGTA 58.127 33.333 2.25 0.00 0.00 2.41
2273 4232 8.514330 ACTGGAAAGTAAACTGTTGTAAATGA 57.486 30.769 0.00 0.00 0.00 2.57
2274 4233 8.962679 ACTGGAAAGTAAACTGTTGTAAATGAA 58.037 29.630 0.00 0.00 0.00 2.57
2275 4234 9.450807 CTGGAAAGTAAACTGTTGTAAATGAAG 57.549 33.333 0.00 0.00 0.00 3.02
2277 4236 9.797556 GGAAAGTAAACTGTTGTAAATGAAGTT 57.202 29.630 0.00 0.00 31.11 2.66
2279 4238 9.581099 AAAGTAAACTGTTGTAAATGAAGTTGG 57.419 29.630 0.00 0.00 30.56 3.77
2280 4239 8.288689 AGTAAACTGTTGTAAATGAAGTTGGT 57.711 30.769 0.00 0.00 30.56 3.67
2281 4240 9.398538 AGTAAACTGTTGTAAATGAAGTTGGTA 57.601 29.630 0.00 0.00 30.56 3.25
2282 4241 9.659830 GTAAACTGTTGTAAATGAAGTTGGTAG 57.340 33.333 0.00 0.00 30.56 3.18
2283 4242 6.313744 ACTGTTGTAAATGAAGTTGGTAGC 57.686 37.500 0.00 0.00 0.00 3.58
2302 4261 9.650539 TTGGTAGCGTATTTACATTGTAGTTTA 57.349 29.630 0.00 0.00 0.00 2.01
2344 4303 8.579682 AAATAAGTTTGTTCAGTTGAATCTGC 57.420 30.769 0.00 0.00 36.33 4.26
2361 4320 7.386059 TGAATCTGCTTGATACTAGTTTGACA 58.614 34.615 0.00 0.00 34.45 3.58
2363 4322 8.798859 AATCTGCTTGATACTAGTTTGACATT 57.201 30.769 0.00 0.00 34.45 2.71
2396 4355 5.445964 GTGAAGGAGCTGGGGATTTATTTA 58.554 41.667 0.00 0.00 0.00 1.40
2429 4388 5.592282 TCCACAGATAGCAAAAACTGTTGAA 59.408 36.000 0.00 0.00 40.84 2.69
2488 4447 8.403236 ACTCAATTCAACTACTTACACCAAAAC 58.597 33.333 0.00 0.00 0.00 2.43
2502 4461 1.478105 CCAAAACTGCCTGGGATAAGC 59.522 52.381 0.00 0.00 0.00 3.09
2515 4474 2.170607 GGGATAAGCAGTGGCAGACTTA 59.829 50.000 6.34 6.34 44.61 2.24
2528 4487 2.866762 GCAGACTTATAGAAAGGTGCCG 59.133 50.000 4.03 0.00 0.00 5.69
2549 4508 2.744202 GTGCTGGTCACATTTCCTACAG 59.256 50.000 0.00 0.00 44.98 2.74
2552 4511 1.004277 TGGTCACATTTCCTACAGCCC 59.996 52.381 0.00 0.00 0.00 5.19
2569 4528 0.804989 CCCGAACAAAGATGCAGGTC 59.195 55.000 0.00 0.00 0.00 3.85
2579 4538 1.484240 AGATGCAGGTCTGTAGCCTTC 59.516 52.381 0.00 0.00 31.98 3.46
2581 4540 0.898320 TGCAGGTCTGTAGCCTTCTC 59.102 55.000 0.00 0.00 33.31 2.87
2595 4554 8.185506 TGTAGCCTTCTCGGTAATTGATAATA 57.814 34.615 0.00 0.00 34.25 0.98
2664 4627 9.842775 CCTACATGACAGCATATTATCCATAAT 57.157 33.333 0.00 0.00 36.89 1.28
2680 4643 5.189928 TCCATAATTTGCCGACAGTTGTAT 58.810 37.500 0.00 0.00 0.00 2.29
2710 4673 4.513692 TGTTGTGTACCTGTGCTAACATTC 59.486 41.667 0.00 0.00 35.22 2.67
2719 4682 4.460382 CCTGTGCTAACATTCTGGTCAAAT 59.540 41.667 0.00 0.00 35.22 2.32
2722 4685 5.301551 TGTGCTAACATTCTGGTCAAATTGT 59.698 36.000 0.00 0.00 0.00 2.71
2737 4700 4.272991 TCAAATTGTTGACAGCATTTTGCC 59.727 37.500 23.68 0.00 40.64 4.52
2757 4720 3.252458 GCCGTGTTCCTTTTATGTTCACT 59.748 43.478 0.00 0.00 0.00 3.41
2761 4724 6.370442 CCGTGTTCCTTTTATGTTCACTATCA 59.630 38.462 0.00 0.00 0.00 2.15
2776 4739 9.665719 TGTTCACTATCAATGTAATGTGTGTAT 57.334 29.630 0.00 0.00 0.00 2.29
2779 4742 8.611757 TCACTATCAATGTAATGTGTGTATTGC 58.388 33.333 0.00 0.00 0.00 3.56
2781 4744 9.830975 ACTATCAATGTAATGTGTGTATTGCTA 57.169 29.630 0.00 0.00 0.00 3.49
2903 4866 4.982241 ATTCTTCTGACAGTTTCCCTGA 57.018 40.909 1.59 0.00 44.49 3.86
2914 4877 7.685481 TGACAGTTTCCCTGAGTTGAATAATA 58.315 34.615 0.00 0.00 44.49 0.98
2956 4919 0.976641 CAGGTCACCTCTGCCACTTA 59.023 55.000 0.00 0.00 0.00 2.24
2970 4933 1.548719 CCACTTACTGTCGATGTCCCA 59.451 52.381 0.00 0.00 0.00 4.37
2982 4945 1.340248 GATGTCCCATATGTCGACGGT 59.660 52.381 11.62 4.73 0.00 4.83
3053 5016 2.364970 CTGGGCTCAAGAGATCCACTAG 59.635 54.545 0.32 0.00 31.52 2.57
3149 5120 8.822652 AGAAAGCTTTCATTTTTGTATCAAGG 57.177 30.769 34.39 0.00 39.61 3.61
3207 5178 5.163513 CCATACAATTTTCAGTCACTTGGC 58.836 41.667 0.00 0.00 0.00 4.52
3208 5179 3.354089 ACAATTTTCAGTCACTTGGCG 57.646 42.857 0.00 0.00 0.00 5.69
3212 5183 1.785041 TTTCAGTCACTTGGCGCTGC 61.785 55.000 7.64 0.00 0.00 5.25
3219 5190 1.966451 ACTTGGCGCTGCAGTAACC 60.966 57.895 16.64 14.54 0.00 2.85
3222 5193 0.251916 TTGGCGCTGCAGTAACCTAT 59.748 50.000 16.64 0.00 0.00 2.57
3257 5228 7.394359 ACACAGCCATACACTTGAATTTCTAAT 59.606 33.333 0.00 0.00 0.00 1.73
3260 5231 6.604795 AGCCATACACTTGAATTTCTAATGCT 59.395 34.615 0.00 0.00 0.00 3.79
3263 5234 8.461222 CCATACACTTGAATTTCTAATGCTCAA 58.539 33.333 0.00 0.00 0.00 3.02
3271 5242 9.558396 TTGAATTTCTAATGCTCAAACCATTTT 57.442 25.926 0.00 0.00 34.87 1.82
3272 5243 9.206870 TGAATTTCTAATGCTCAAACCATTTTC 57.793 29.630 0.00 0.00 34.87 2.29
3286 5258 9.631452 TCAAACCATTTTCAAAATTTGTTTTCC 57.369 25.926 13.82 0.00 0.00 3.13
3287 5259 9.636879 CAAACCATTTTCAAAATTTGTTTTCCT 57.363 25.926 13.82 0.00 0.00 3.36
3289 5261 8.347004 ACCATTTTCAAAATTTGTTTTCCTGT 57.653 26.923 5.56 0.00 0.00 4.00
3345 5324 7.401246 AGGAAGAAAAGAAGAATGTCTGCTAT 58.599 34.615 0.00 0.00 28.78 2.97
3398 5377 4.922206 TCAAGCTCTATGGTTCATTTGGT 58.078 39.130 0.00 0.00 33.63 3.67
3406 5385 3.992260 TGGTTCATTTGGTGTTAACGG 57.008 42.857 0.26 0.00 0.00 4.44
3421 5418 6.262601 GTGTTAACGGTCCATTTTATCATGG 58.737 40.000 0.26 0.00 44.80 3.66
3442 5439 6.862711 TGGTATGTGAAATTGAAACACGTA 57.137 33.333 0.00 0.00 37.35 3.57
3469 5466 7.865706 TCACTTTTCCAAGGAATAATCTAGC 57.134 36.000 1.78 0.00 33.82 3.42
3475 5472 9.747898 TTTTCCAAGGAATAATCTAGCAAGTTA 57.252 29.630 1.78 0.00 33.79 2.24
3531 5540 4.305989 TGTTTTCCAGCTGTCATTTGAC 57.694 40.909 13.81 3.72 44.97 3.18
3561 5570 1.915141 CAGATGAGCAAGGTTGGGTT 58.085 50.000 0.00 0.00 0.00 4.11
3567 5576 0.258774 AGCAAGGTTGGGTTGACACT 59.741 50.000 0.00 0.00 0.00 3.55
3701 5711 6.874288 ATCAGAGGTATTTAAGCTGCATTC 57.126 37.500 1.02 0.00 35.60 2.67
3737 5747 2.116125 GCAACACAGGGCCTCCTT 59.884 61.111 0.95 0.00 42.67 3.36
3756 5766 7.168905 CCTCCTTTAGTTTCAGTAGAATTGGT 58.831 38.462 0.00 0.00 32.89 3.67
3757 5767 7.119846 CCTCCTTTAGTTTCAGTAGAATTGGTG 59.880 40.741 0.00 0.00 32.89 4.17
3794 5804 1.448540 CCTAGGCTGCAAGGTGACG 60.449 63.158 11.08 0.00 0.00 4.35
3807 5817 6.399743 TGCAAGGTGACGTTTAATATACAGA 58.600 36.000 0.00 0.00 0.00 3.41
3854 5865 5.890110 AAATTGTCGCTATCATGACTACG 57.110 39.130 0.00 1.76 36.10 3.51
3856 5867 3.604065 TGTCGCTATCATGACTACGTC 57.396 47.619 0.00 0.50 36.10 4.34
3864 5875 0.170339 CATGACTACGTCAGCACCGA 59.830 55.000 0.00 0.00 46.04 4.69
3881 5892 4.051922 CACCGAAATCAGTACTATCCAGC 58.948 47.826 0.00 0.00 0.00 4.85
3894 5905 1.678635 TCCAGCTGGAAATTGGCCG 60.679 57.895 33.41 2.70 42.18 6.13
3905 5916 1.173913 AATTGGCCGTAGCTTCAACC 58.826 50.000 0.00 0.00 39.73 3.77
3906 5917 0.328258 ATTGGCCGTAGCTTCAACCT 59.672 50.000 0.00 0.00 39.73 3.50
3907 5918 0.109723 TTGGCCGTAGCTTCAACCTT 59.890 50.000 0.00 0.00 39.73 3.50
3908 5919 0.321298 TGGCCGTAGCTTCAACCTTC 60.321 55.000 0.00 0.00 39.73 3.46
3909 5920 0.321298 GGCCGTAGCTTCAACCTTCA 60.321 55.000 0.00 0.00 39.73 3.02
3910 5921 1.519408 GCCGTAGCTTCAACCTTCAA 58.481 50.000 0.00 0.00 35.50 2.69
3911 5922 1.197036 GCCGTAGCTTCAACCTTCAAC 59.803 52.381 0.00 0.00 35.50 3.18
3912 5923 2.489971 CCGTAGCTTCAACCTTCAACA 58.510 47.619 0.00 0.00 0.00 3.33
3913 5924 2.223377 CCGTAGCTTCAACCTTCAACAC 59.777 50.000 0.00 0.00 0.00 3.32
3914 5925 2.223377 CGTAGCTTCAACCTTCAACACC 59.777 50.000 0.00 0.00 0.00 4.16
3915 5926 2.435372 AGCTTCAACCTTCAACACCA 57.565 45.000 0.00 0.00 0.00 4.17
3916 5927 2.733956 AGCTTCAACCTTCAACACCAA 58.266 42.857 0.00 0.00 0.00 3.67
3917 5928 2.689983 AGCTTCAACCTTCAACACCAAG 59.310 45.455 0.00 0.00 0.00 3.61
3918 5929 2.223805 GCTTCAACCTTCAACACCAAGG 60.224 50.000 0.00 0.00 45.41 3.61
3919 5930 1.398692 TCAACCTTCAACACCAAGGC 58.601 50.000 0.00 0.00 43.96 4.35
3920 5931 0.389025 CAACCTTCAACACCAAGGCC 59.611 55.000 0.00 0.00 43.96 5.19
3921 5932 1.106944 AACCTTCAACACCAAGGCCG 61.107 55.000 0.00 0.00 43.96 6.13
3922 5933 2.644992 CTTCAACACCAAGGCCGC 59.355 61.111 0.00 0.00 0.00 6.53
3923 5934 1.898574 CTTCAACACCAAGGCCGCT 60.899 57.895 0.00 0.00 0.00 5.52
3924 5935 0.605319 CTTCAACACCAAGGCCGCTA 60.605 55.000 0.00 0.00 0.00 4.26
3925 5936 0.179015 TTCAACACCAAGGCCGCTAA 60.179 50.000 0.00 0.00 0.00 3.09
3926 5937 0.887387 TCAACACCAAGGCCGCTAAC 60.887 55.000 0.00 0.00 0.00 2.34
3927 5938 1.964373 AACACCAAGGCCGCTAACG 60.964 57.895 0.00 0.00 39.67 3.18
3936 5947 2.453638 GCCGCTAACGCCAGAACTC 61.454 63.158 0.00 0.00 38.22 3.01
3940 5951 1.135489 CGCTAACGCCAGAACTCTGTA 60.135 52.381 6.01 0.00 42.27 2.74
3949 5960 5.105310 ACGCCAGAACTCTGTAGAATTGTAT 60.105 40.000 6.01 0.00 42.27 2.29
3951 5962 5.755861 GCCAGAACTCTGTAGAATTGTATCC 59.244 44.000 6.01 0.00 42.27 2.59
3955 5966 7.858382 CAGAACTCTGTAGAATTGTATCCTACG 59.142 40.741 0.00 0.00 39.09 3.51
3959 5970 6.051074 TCTGTAGAATTGTATCCTACGTCGA 58.949 40.000 0.00 0.00 36.47 4.20
3963 5974 6.636562 AGAATTGTATCCTACGTCGATCTT 57.363 37.500 0.00 0.00 0.00 2.40
3964 5975 6.670233 AGAATTGTATCCTACGTCGATCTTC 58.330 40.000 0.00 0.00 0.00 2.87
3974 5985 1.514811 CGTCGATCTTCTTAAGCAGCG 59.485 52.381 0.00 0.00 0.00 5.18
3975 5986 1.855360 GTCGATCTTCTTAAGCAGCGG 59.145 52.381 0.00 0.00 0.00 5.52
3976 5987 1.749063 TCGATCTTCTTAAGCAGCGGA 59.251 47.619 0.00 0.00 0.00 5.54
3980 5991 1.066858 TCTTCTTAAGCAGCGGAGTGG 60.067 52.381 0.00 0.00 0.00 4.00
3982 5993 2.046314 TTAAGCAGCGGAGTGGCC 60.046 61.111 0.00 0.00 0.00 5.36
3983 5994 3.622060 TTAAGCAGCGGAGTGGCCC 62.622 63.158 0.00 0.00 0.00 5.80
3988 5999 2.040009 GCAGCGGAGTGGCCCTATAA 62.040 60.000 0.00 0.00 0.00 0.98
3989 6000 0.468226 CAGCGGAGTGGCCCTATAAA 59.532 55.000 0.00 0.00 0.00 1.40
3990 6001 0.759346 AGCGGAGTGGCCCTATAAAG 59.241 55.000 0.00 0.00 0.00 1.85
3991 6002 0.756903 GCGGAGTGGCCCTATAAAGA 59.243 55.000 0.00 0.00 0.00 2.52
3994 6005 3.881220 CGGAGTGGCCCTATAAAGAAAA 58.119 45.455 0.00 0.00 0.00 2.29
3995 6006 3.877508 CGGAGTGGCCCTATAAAGAAAAG 59.122 47.826 0.00 0.00 0.00 2.27
3996 6007 4.625564 CGGAGTGGCCCTATAAAGAAAAGT 60.626 45.833 0.00 0.00 0.00 2.66
3997 6008 4.882427 GGAGTGGCCCTATAAAGAAAAGTC 59.118 45.833 0.00 0.00 0.00 3.01
3998 6009 5.339282 GGAGTGGCCCTATAAAGAAAAGTCT 60.339 44.000 0.00 0.00 34.72 3.24
3999 6010 5.746284 AGTGGCCCTATAAAGAAAAGTCTC 58.254 41.667 0.00 0.00 30.70 3.36
4000 6011 4.882427 GTGGCCCTATAAAGAAAAGTCTCC 59.118 45.833 0.00 0.00 30.70 3.71
4001 6012 4.127907 GGCCCTATAAAGAAAAGTCTCCG 58.872 47.826 0.00 0.00 30.70 4.63
4003 6014 5.183969 GCCCTATAAAGAAAAGTCTCCGTT 58.816 41.667 0.00 0.00 30.70 4.44
4004 6015 5.293814 GCCCTATAAAGAAAAGTCTCCGTTC 59.706 44.000 0.00 0.00 30.70 3.95
4006 6017 6.535508 CCCTATAAAGAAAAGTCTCCGTTCAG 59.464 42.308 0.00 0.00 30.70 3.02
4007 6018 6.535508 CCTATAAAGAAAAGTCTCCGTTCAGG 59.464 42.308 0.00 0.00 42.97 3.86
4008 6019 3.840124 AAGAAAAGTCTCCGTTCAGGT 57.160 42.857 0.00 0.00 41.99 4.00
4009 6020 3.388345 AGAAAAGTCTCCGTTCAGGTC 57.612 47.619 0.00 0.00 41.99 3.85
4019 6044 3.280295 TCCGTTCAGGTCATCTCTACTC 58.720 50.000 0.00 0.00 41.99 2.59
4027 6052 6.814043 TCAGGTCATCTCTACTCATCAATTG 58.186 40.000 0.00 0.00 0.00 2.32
4065 6090 7.501559 ACTGATTGGAGATAAACTGATCATTGG 59.498 37.037 0.00 0.00 0.00 3.16
4083 6108 9.793259 GATCATTGGTAGGTAATATTCTCCAAA 57.207 33.333 10.80 2.83 37.11 3.28
4092 6117 8.366359 AGGTAATATTCTCCAAAAATGCAACT 57.634 30.769 10.80 0.00 0.00 3.16
4104 6129 1.171308 ATGCAACTGTTAGGCTGCTG 58.829 50.000 0.00 0.00 35.78 4.41
4158 6183 4.020128 ACCGAGAAATACTTGAAGAGCCTT 60.020 41.667 0.00 0.00 31.94 4.35
4161 6186 5.872070 CGAGAAATACTTGAAGAGCCTTCTT 59.128 40.000 13.76 2.64 46.22 2.52
4231 6264 2.354259 AGGTCGAGGTCAAGTACTACG 58.646 52.381 0.00 0.00 0.00 3.51
4239 6272 2.560105 GGTCAAGTACTACGTGGTTCCT 59.440 50.000 10.71 3.91 0.00 3.36
4254 6287 1.617357 GTTCCTGGGTACAACGAGACT 59.383 52.381 0.00 0.00 0.00 3.24
4260 6293 0.245813 GGTACAACGAGACTGGACCC 59.754 60.000 0.00 0.00 41.38 4.46
4267 6300 4.640690 AGACTGGACCCGCCCTGT 62.641 66.667 0.00 0.00 40.45 4.00
4272 6305 3.319198 GGACCCGCCCTGTCTCAA 61.319 66.667 0.00 0.00 33.22 3.02
4617 6652 4.481463 CGATGATTTAACCAAAAAGGCGT 58.519 39.130 0.00 0.00 43.14 5.68
4619 6654 4.920640 TGATTTAACCAAAAAGGCGTCA 57.079 36.364 0.00 0.00 43.14 4.35
4620 6655 5.461032 TGATTTAACCAAAAAGGCGTCAT 57.539 34.783 0.00 0.00 43.14 3.06
4632 6669 3.537793 AGGCGTCATTCGTTTTCTTTC 57.462 42.857 0.00 0.00 42.13 2.62
4719 9062 0.611618 TGCCCCATAGCAAGTTGTGG 60.612 55.000 4.48 4.42 40.56 4.17
4720 9063 1.948721 GCCCCATAGCAAGTTGTGGC 61.949 60.000 4.48 4.18 0.00 5.01
4721 9064 0.323725 CCCCATAGCAAGTTGTGGCT 60.324 55.000 4.48 0.00 43.94 4.75
4722 9065 0.813184 CCCATAGCAAGTTGTGGCTG 59.187 55.000 4.48 0.00 41.25 4.85
4723 9066 1.538047 CCATAGCAAGTTGTGGCTGT 58.462 50.000 4.48 0.00 41.25 4.40
4724 9067 1.200716 CCATAGCAAGTTGTGGCTGTG 59.799 52.381 4.48 4.28 45.38 3.66
4725 9068 2.566833 ATAGCAAGTTGTGGCTGTGA 57.433 45.000 4.48 0.00 41.25 3.58
4726 9069 1.593196 TAGCAAGTTGTGGCTGTGAC 58.407 50.000 4.48 0.00 41.25 3.67
4727 9070 1.103398 AGCAAGTTGTGGCTGTGACC 61.103 55.000 4.48 0.00 39.30 4.02
4728 9071 1.103398 GCAAGTTGTGGCTGTGACCT 61.103 55.000 4.48 0.00 0.00 3.85
4729 9072 1.813862 GCAAGTTGTGGCTGTGACCTA 60.814 52.381 4.48 0.00 0.00 3.08
4730 9073 2.146342 CAAGTTGTGGCTGTGACCTAG 58.854 52.381 0.00 0.00 0.00 3.02
4731 9074 1.717032 AGTTGTGGCTGTGACCTAGA 58.283 50.000 0.00 0.00 0.00 2.43
4732 9075 1.620819 AGTTGTGGCTGTGACCTAGAG 59.379 52.381 0.00 0.00 0.00 2.43
4733 9076 1.344763 GTTGTGGCTGTGACCTAGAGT 59.655 52.381 0.00 0.00 0.00 3.24
4734 9077 2.561419 GTTGTGGCTGTGACCTAGAGTA 59.439 50.000 0.00 0.00 0.00 2.59
4735 9078 3.101643 TGTGGCTGTGACCTAGAGTAT 57.898 47.619 0.00 0.00 0.00 2.12
4736 9079 3.441101 TGTGGCTGTGACCTAGAGTATT 58.559 45.455 0.00 0.00 0.00 1.89
4737 9080 4.606210 TGTGGCTGTGACCTAGAGTATTA 58.394 43.478 0.00 0.00 0.00 0.98
4738 9081 4.645136 TGTGGCTGTGACCTAGAGTATTAG 59.355 45.833 0.00 0.00 0.00 1.73
4739 9082 4.645588 GTGGCTGTGACCTAGAGTATTAGT 59.354 45.833 0.00 0.00 0.00 2.24
4740 9083 5.127356 GTGGCTGTGACCTAGAGTATTAGTT 59.873 44.000 0.00 0.00 0.00 2.24
4741 9084 5.127194 TGGCTGTGACCTAGAGTATTAGTTG 59.873 44.000 0.00 0.00 0.00 3.16
4742 9085 5.127356 GGCTGTGACCTAGAGTATTAGTTGT 59.873 44.000 0.00 0.00 0.00 3.32
4743 9086 6.320672 GGCTGTGACCTAGAGTATTAGTTGTA 59.679 42.308 0.00 0.00 0.00 2.41
4744 9087 7.014422 GGCTGTGACCTAGAGTATTAGTTGTAT 59.986 40.741 0.00 0.00 0.00 2.29
4745 9088 7.863375 GCTGTGACCTAGAGTATTAGTTGTATG 59.137 40.741 0.00 0.00 0.00 2.39
4746 9089 8.818622 TGTGACCTAGAGTATTAGTTGTATGT 57.181 34.615 0.00 0.00 0.00 2.29
4747 9090 9.251440 TGTGACCTAGAGTATTAGTTGTATGTT 57.749 33.333 0.00 0.00 0.00 2.71
4828 9229 4.508124 GCTTGTGTCCTCTTATATTCGGTG 59.492 45.833 0.00 0.00 0.00 4.94
4915 9321 2.600731 CAACCGCTTTGTTGAACAACA 58.399 42.857 10.72 15.04 46.77 3.33
4972 9381 6.980978 CGACTTGATCCTGTGTAATCTAATGT 59.019 38.462 0.00 0.00 0.00 2.71
5002 9411 6.189567 ACTAGAAAATTTCAACGACAACACG 58.810 36.000 8.55 0.00 39.31 4.49
5014 9424 4.245660 ACGACAACACGATCAATCAATCT 58.754 39.130 0.00 0.00 37.03 2.40
5019 9429 2.679837 ACACGATCAATCAATCTGTGGC 59.320 45.455 0.00 0.00 35.95 5.01
5041 9451 3.246619 CTCTCTAGTTCCTTTCGTGTGC 58.753 50.000 0.00 0.00 0.00 4.57
5086 9501 7.173218 TGCTCTAAATTTGACCTTGACAACTAG 59.827 37.037 0.00 0.00 0.00 2.57
5166 9588 3.910490 GCACCACGGCCAAGCAAA 61.910 61.111 2.24 0.00 0.00 3.68
5214 9642 1.371183 CAAGTCCTGGCGTCCTTGA 59.629 57.895 0.00 0.00 37.14 3.02
5230 9658 2.365617 CCTTGATATGCCTCTACCACGT 59.634 50.000 0.00 0.00 0.00 4.49
5236 9667 4.063967 CCTCTACCACGTGCCGCA 62.064 66.667 10.91 0.00 0.00 5.69
5238 9669 3.567478 CTCTACCACGTGCCGCACA 62.567 63.158 22.89 2.36 33.40 4.57
5273 9704 1.181786 CCTTCAGCCTCGACTTCTCT 58.818 55.000 0.00 0.00 0.00 3.10
5276 9707 2.136298 TCAGCCTCGACTTCTCTGAT 57.864 50.000 0.00 0.00 0.00 2.90
5285 9716 1.220206 CTTCTCTGATGCCGGTGCT 59.780 57.895 1.90 0.00 38.71 4.40
5309 9740 1.518572 GTCGATCATTGTCGCCGGT 60.519 57.895 1.90 0.00 41.22 5.28
5438 9869 1.374947 CACCGCCTTCTCCTTCCAA 59.625 57.895 0.00 0.00 0.00 3.53
5450 9887 1.635487 TCCTTCCAAATCACCCCAGAG 59.365 52.381 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.317150 TCGCGGTATCAATATCTGCTTG 58.683 45.455 6.13 0.00 0.00 4.01
46 47 3.660501 TCGCGGTATCAATATCTGCTT 57.339 42.857 6.13 0.00 0.00 3.91
53 54 3.131577 ACACCTTCTTCGCGGTATCAATA 59.868 43.478 6.13 0.00 30.91 1.90
79 80 9.907576 GACTAAGAATTACAATGAAATCTCGTG 57.092 33.333 0.00 0.00 0.00 4.35
275 298 0.324460 TTGGGTTGGGTTTTCGTGGT 60.324 50.000 0.00 0.00 0.00 4.16
277 300 1.204941 TGTTTGGGTTGGGTTTTCGTG 59.795 47.619 0.00 0.00 0.00 4.35
279 302 2.674796 TTGTTTGGGTTGGGTTTTCG 57.325 45.000 0.00 0.00 0.00 3.46
282 305 4.576330 TTTCATTGTTTGGGTTGGGTTT 57.424 36.364 0.00 0.00 0.00 3.27
306 2047 3.173965 TGGGTTGGTTTTCTTTTGTCCA 58.826 40.909 0.00 0.00 0.00 4.02
379 2121 0.465705 ATGATCGGCCCACTACTGTG 59.534 55.000 0.00 0.00 43.45 3.66
413 2155 1.490574 ATATATGCTCCCCTCGCCTC 58.509 55.000 0.00 0.00 0.00 4.70
415 2157 1.069358 GCTATATATGCTCCCCTCGCC 59.931 57.143 0.00 0.00 0.00 5.54
416 2158 2.035632 AGCTATATATGCTCCCCTCGC 58.964 52.381 0.00 0.00 35.67 5.03
449 2191 1.668751 GGCGCATCTTTCGGATTGTTA 59.331 47.619 10.83 0.00 31.27 2.41
502 2244 3.869065 TGTTGAGAAACGAGTCAGGTTT 58.131 40.909 0.00 0.00 40.11 3.27
509 2251 6.737254 TTCTTTCTTTGTTGAGAAACGAGT 57.263 33.333 0.00 0.00 39.90 4.18
511 2253 6.373216 TCCTTTCTTTCTTTGTTGAGAAACGA 59.627 34.615 0.00 0.00 39.90 3.85
517 2259 8.986477 TTCTTTTCCTTTCTTTCTTTGTTGAG 57.014 30.769 0.00 0.00 0.00 3.02
518 2260 8.802267 TCTTCTTTTCCTTTCTTTCTTTGTTGA 58.198 29.630 0.00 0.00 0.00 3.18
519 2261 8.986477 TCTTCTTTTCCTTTCTTTCTTTGTTG 57.014 30.769 0.00 0.00 0.00 3.33
522 2267 8.986477 TGTTCTTCTTTTCCTTTCTTTCTTTG 57.014 30.769 0.00 0.00 0.00 2.77
524 2269 8.753133 ACATGTTCTTCTTTTCCTTTCTTTCTT 58.247 29.630 0.00 0.00 0.00 2.52
529 2274 6.830838 AGTGACATGTTCTTCTTTTCCTTTCT 59.169 34.615 0.00 0.00 0.00 2.52
530 2275 7.032377 AGTGACATGTTCTTCTTTTCCTTTC 57.968 36.000 0.00 0.00 0.00 2.62
535 2280 7.697691 TCTGAAAGTGACATGTTCTTCTTTTC 58.302 34.615 14.52 12.04 32.93 2.29
557 2302 6.000219 TCTTCCTTCCACTCTTTCATTTCTG 59.000 40.000 0.00 0.00 0.00 3.02
558 2303 6.000840 GTCTTCCTTCCACTCTTTCATTTCT 58.999 40.000 0.00 0.00 0.00 2.52
573 2318 2.370281 TGCATCTCGTGTCTTCCTTC 57.630 50.000 0.00 0.00 0.00 3.46
582 2327 1.376543 AGCCAAAGATGCATCTCGTG 58.623 50.000 28.83 25.93 35.76 4.35
584 2329 2.793933 CAAAGCCAAAGATGCATCTCG 58.206 47.619 28.83 21.47 35.76 4.04
593 2338 3.625649 ACCAAAAAGCAAAGCCAAAGA 57.374 38.095 0.00 0.00 0.00 2.52
594 2339 4.700268 AAACCAAAAAGCAAAGCCAAAG 57.300 36.364 0.00 0.00 0.00 2.77
595 2340 5.225642 CAAAAACCAAAAAGCAAAGCCAAA 58.774 33.333 0.00 0.00 0.00 3.28
620 2377 6.704289 TTTGGAATATGCATTTCTCCTCAG 57.296 37.500 3.54 0.00 0.00 3.35
630 2387 4.121317 CGGCACATTTTTGGAATATGCAT 58.879 39.130 3.79 3.79 33.24 3.96
631 2388 3.519579 CGGCACATTTTTGGAATATGCA 58.480 40.909 4.65 0.00 33.24 3.96
636 2393 0.612744 CCCCGGCACATTTTTGGAAT 59.387 50.000 0.00 0.00 0.00 3.01
649 2406 4.937201 AATTTCAAATAAGATCCCCGGC 57.063 40.909 0.00 0.00 0.00 6.13
651 2408 5.049828 GGCAAATTTCAAATAAGATCCCCG 58.950 41.667 0.00 0.00 0.00 5.73
653 2410 5.748630 GTCGGCAAATTTCAAATAAGATCCC 59.251 40.000 0.00 0.00 0.00 3.85
654 2411 6.564328 AGTCGGCAAATTTCAAATAAGATCC 58.436 36.000 0.00 0.00 0.00 3.36
687 2450 4.022242 TCTGTGTCTAGGTTTCTTCCTTCG 60.022 45.833 0.00 0.00 38.86 3.79
699 2462 5.979993 TCTGAGTACTACTCTGTGTCTAGG 58.020 45.833 15.76 0.00 45.27 3.02
704 2467 5.074115 AGCTTTCTGAGTACTACTCTGTGT 58.926 41.667 15.76 0.00 45.27 3.72
709 2472 8.271312 TCTTTAGAGCTTTCTGAGTACTACTC 57.729 38.462 9.04 9.04 45.26 2.59
737 2500 6.374417 TGAGATAAGAAACTACAGGCCTTT 57.626 37.500 0.00 0.00 0.00 3.11
738 2501 6.013293 ACTTGAGATAAGAAACTACAGGCCTT 60.013 38.462 0.00 0.00 0.00 4.35
739 2502 5.485708 ACTTGAGATAAGAAACTACAGGCCT 59.514 40.000 0.00 0.00 0.00 5.19
740 2503 5.735766 ACTTGAGATAAGAAACTACAGGCC 58.264 41.667 0.00 0.00 0.00 5.19
741 2504 8.657729 GTTTACTTGAGATAAGAAACTACAGGC 58.342 37.037 0.00 0.00 0.00 4.85
742 2505 9.930693 AGTTTACTTGAGATAAGAAACTACAGG 57.069 33.333 11.71 0.00 35.84 4.00
745 2508 8.657729 GCCAGTTTACTTGAGATAAGAAACTAC 58.342 37.037 12.42 7.90 35.84 2.73
746 2509 7.544566 CGCCAGTTTACTTGAGATAAGAAACTA 59.455 37.037 12.42 0.00 35.84 2.24
747 2510 6.369065 CGCCAGTTTACTTGAGATAAGAAACT 59.631 38.462 0.00 0.00 37.55 2.66
748 2511 6.534934 CGCCAGTTTACTTGAGATAAGAAAC 58.465 40.000 0.00 0.00 0.00 2.78
751 2514 4.181578 GCGCCAGTTTACTTGAGATAAGA 58.818 43.478 0.00 0.00 0.00 2.10
752 2515 3.932710 TGCGCCAGTTTACTTGAGATAAG 59.067 43.478 4.18 0.00 0.00 1.73
753 2516 3.932822 TGCGCCAGTTTACTTGAGATAA 58.067 40.909 4.18 0.00 0.00 1.75
763 2526 4.511617 TTGATCAAATTGCGCCAGTTTA 57.488 36.364 5.45 0.00 0.00 2.01
767 2530 4.389382 TCAAATTTGATCAAATTGCGCCAG 59.611 37.500 35.41 23.43 46.76 4.85
826 2589 6.122125 GTCAAAATTCAAATCAAACGCTGTG 58.878 36.000 0.00 0.00 0.00 3.66
843 2606 6.262049 GGCCCTGTAAATTTTTGTGTCAAAAT 59.738 34.615 8.18 0.00 0.00 1.82
844 2607 5.586643 GGCCCTGTAAATTTTTGTGTCAAAA 59.413 36.000 0.00 3.93 0.00 2.44
845 2608 5.119694 GGCCCTGTAAATTTTTGTGTCAAA 58.880 37.500 0.00 0.00 0.00 2.69
846 2609 4.698575 GGCCCTGTAAATTTTTGTGTCAA 58.301 39.130 0.00 0.00 0.00 3.18
847 2610 3.243569 CGGCCCTGTAAATTTTTGTGTCA 60.244 43.478 0.00 0.00 0.00 3.58
848 2611 3.243602 ACGGCCCTGTAAATTTTTGTGTC 60.244 43.478 0.00 0.00 0.00 3.67
849 2612 2.696187 ACGGCCCTGTAAATTTTTGTGT 59.304 40.909 0.00 0.00 0.00 3.72
850 2613 3.056304 CACGGCCCTGTAAATTTTTGTG 58.944 45.455 0.00 0.00 0.00 3.33
873 2636 2.540383 AGTCATCCTGCTGTGGTTCTA 58.460 47.619 0.00 0.00 0.00 2.10
874 2637 1.356124 AGTCATCCTGCTGTGGTTCT 58.644 50.000 0.00 0.00 0.00 3.01
875 2638 1.808945 CAAGTCATCCTGCTGTGGTTC 59.191 52.381 0.00 0.00 0.00 3.62
881 2644 0.747283 GGAGCCAAGTCATCCTGCTG 60.747 60.000 0.00 0.00 31.23 4.41
918 2681 4.677151 GGGGAGTGGGGAGTGGGT 62.677 72.222 0.00 0.00 0.00 4.51
926 2689 4.675303 TGGGGAGTGGGGAGTGGG 62.675 72.222 0.00 0.00 0.00 4.61
927 2690 3.330720 GTGGGGAGTGGGGAGTGG 61.331 72.222 0.00 0.00 0.00 4.00
928 2691 2.203998 AGTGGGGAGTGGGGAGTG 60.204 66.667 0.00 0.00 0.00 3.51
929 2692 2.203998 CAGTGGGGAGTGGGGAGT 60.204 66.667 0.00 0.00 0.00 3.85
930 2693 3.011517 CCAGTGGGGAGTGGGGAG 61.012 72.222 0.00 0.00 40.01 4.30
1229 3020 4.271816 CGAGGATCCACGGCGAGG 62.272 72.222 22.28 17.68 0.00 4.63
1244 3035 4.697756 CCAGGAGCCAAACCGCGA 62.698 66.667 8.23 0.00 0.00 5.87
1279 3070 2.047274 ATGAGGAACGGCGTGGTG 60.047 61.111 15.70 0.00 0.00 4.17
1288 3079 4.592485 ATCCTACACATCGATGAGGAAC 57.408 45.455 28.33 0.00 39.69 3.62
1344 3135 5.119125 GCTGAAACAAAATGCCATCTTACAC 59.881 40.000 0.00 0.00 0.00 2.90
1400 3191 2.495155 TCCATGGAATGTGTGTCCTG 57.505 50.000 13.46 0.00 44.81 3.86
1423 3214 1.515521 GGTTGACCGGACAGGCAAAG 61.516 60.000 9.46 0.00 46.52 2.77
1448 3239 3.119637 CCACAACTTTTTCCGTGTCAAGT 60.120 43.478 0.00 0.00 0.00 3.16
1449 3240 3.127895 TCCACAACTTTTTCCGTGTCAAG 59.872 43.478 0.00 0.00 0.00 3.02
1450 3241 3.082548 TCCACAACTTTTTCCGTGTCAA 58.917 40.909 0.00 0.00 0.00 3.18
1451 3242 2.680841 CTCCACAACTTTTTCCGTGTCA 59.319 45.455 0.00 0.00 0.00 3.58
1452 3243 2.032924 CCTCCACAACTTTTTCCGTGTC 59.967 50.000 0.00 0.00 0.00 3.67
1453 3244 2.021457 CCTCCACAACTTTTTCCGTGT 58.979 47.619 0.00 0.00 0.00 4.49
1454 3245 2.294074 TCCTCCACAACTTTTTCCGTG 58.706 47.619 0.00 0.00 0.00 4.94
1455 3246 2.721425 TCCTCCACAACTTTTTCCGT 57.279 45.000 0.00 0.00 0.00 4.69
1456 3247 3.305335 CCATTCCTCCACAACTTTTTCCG 60.305 47.826 0.00 0.00 0.00 4.30
1499 3456 4.910458 ACAAGGCAAGTAGGAGTAACAT 57.090 40.909 0.00 0.00 0.00 2.71
1501 3458 4.638304 TCAACAAGGCAAGTAGGAGTAAC 58.362 43.478 0.00 0.00 0.00 2.50
1502 3459 4.967084 TCAACAAGGCAAGTAGGAGTAA 57.033 40.909 0.00 0.00 0.00 2.24
1504 3461 4.532521 ACTATCAACAAGGCAAGTAGGAGT 59.467 41.667 0.00 0.00 0.00 3.85
1505 3462 5.091261 ACTATCAACAAGGCAAGTAGGAG 57.909 43.478 0.00 0.00 0.00 3.69
1506 3463 5.499004 AACTATCAACAAGGCAAGTAGGA 57.501 39.130 0.00 0.00 0.00 2.94
1516 3473 8.950210 ACAATCCTGTATCAAACTATCAACAAG 58.050 33.333 0.00 0.00 32.54 3.16
1519 3476 8.607459 CAGACAATCCTGTATCAAACTATCAAC 58.393 37.037 0.00 0.00 35.30 3.18
1537 3494 6.197842 CAGCAAGAACAAAAAGTCAGACAATC 59.802 38.462 2.66 0.00 0.00 2.67
1541 3498 3.793492 GCAGCAAGAACAAAAAGTCAGAC 59.207 43.478 0.00 0.00 0.00 3.51
1542 3499 3.696051 AGCAGCAAGAACAAAAAGTCAGA 59.304 39.130 0.00 0.00 0.00 3.27
1548 3505 3.550639 CGGATCAGCAGCAAGAACAAAAA 60.551 43.478 0.00 0.00 0.00 1.94
1578 3535 2.935740 CGAGAGCCACTGGAGCACA 61.936 63.158 0.00 0.00 0.00 4.57
1632 3589 2.673368 GTGTGCTATGAACTGCCAGTAC 59.327 50.000 0.00 0.00 0.00 2.73
1706 3663 2.359975 CCTCGTCAGCCCCAAACC 60.360 66.667 0.00 0.00 0.00 3.27
1785 3742 7.594758 CGTAACACTGGAAAATTTGACATCAAT 59.405 33.333 0.00 0.00 35.55 2.57
1890 3847 3.251729 CCAGCATTATCACTGGCATGTAC 59.748 47.826 0.00 0.00 46.50 2.90
1891 3848 3.479489 CCAGCATTATCACTGGCATGTA 58.521 45.455 0.00 0.00 46.50 2.29
1892 3849 2.304092 CCAGCATTATCACTGGCATGT 58.696 47.619 0.00 0.00 46.50 3.21
1905 3864 0.390124 CACAGTGCCAAACCAGCATT 59.610 50.000 0.00 0.00 43.29 3.56
1941 3900 3.930634 ACTCCTTTTGCTTGAATGCTC 57.069 42.857 0.00 0.00 0.00 4.26
1953 3912 9.000486 CCTTCTTATCGTTCTTTAACTCCTTTT 58.000 33.333 0.00 0.00 33.15 2.27
1996 3955 9.903682 ATTAACAAAATGAATCAGACTTCTGTG 57.096 29.630 6.15 0.00 44.12 3.66
1997 3956 9.903682 CATTAACAAAATGAATCAGACTTCTGT 57.096 29.630 6.15 0.00 44.12 3.41
2022 3981 4.824479 TCCTGCAAAGATGATACAGTCA 57.176 40.909 0.00 0.00 42.06 3.41
2159 4118 1.610038 CAGACCTTTGCATGCAGAACA 59.390 47.619 21.50 2.53 0.00 3.18
2174 4133 3.877508 CCTTTTTGTCGGATATCCAGACC 59.122 47.826 28.37 18.09 38.14 3.85
2263 4222 5.352643 ACGCTACCAACTTCATTTACAAC 57.647 39.130 0.00 0.00 0.00 3.32
2264 4223 7.675962 AATACGCTACCAACTTCATTTACAA 57.324 32.000 0.00 0.00 0.00 2.41
2265 4224 7.675962 AAATACGCTACCAACTTCATTTACA 57.324 32.000 0.00 0.00 0.00 2.41
2267 4226 8.774890 TGTAAATACGCTACCAACTTCATTTA 57.225 30.769 0.00 0.00 0.00 1.40
2268 4227 7.675962 TGTAAATACGCTACCAACTTCATTT 57.324 32.000 0.00 0.00 0.00 2.32
2270 4229 7.335924 ACAATGTAAATACGCTACCAACTTCAT 59.664 33.333 0.00 0.00 0.00 2.57
2271 4230 6.651643 ACAATGTAAATACGCTACCAACTTCA 59.348 34.615 0.00 0.00 0.00 3.02
2273 4232 7.820872 ACTACAATGTAAATACGCTACCAACTT 59.179 33.333 0.00 0.00 0.00 2.66
2274 4233 7.325694 ACTACAATGTAAATACGCTACCAACT 58.674 34.615 0.00 0.00 0.00 3.16
2275 4234 7.529880 ACTACAATGTAAATACGCTACCAAC 57.470 36.000 0.00 0.00 0.00 3.77
2277 4236 9.650539 TTAAACTACAATGTAAATACGCTACCA 57.349 29.630 0.00 0.00 0.00 3.25
2322 4281 6.942532 AGCAGATTCAACTGAACAAACTTA 57.057 33.333 0.00 0.00 39.94 2.24
2328 4287 6.233434 AGTATCAAGCAGATTCAACTGAACA 58.767 36.000 0.00 0.00 39.94 3.18
2332 4291 7.840342 AACTAGTATCAAGCAGATTCAACTG 57.160 36.000 0.00 0.00 38.19 3.16
2361 4320 4.159135 CAGCTCCTTCACCTGCAATAAAAT 59.841 41.667 0.00 0.00 0.00 1.82
2363 4322 3.084039 CAGCTCCTTCACCTGCAATAAA 58.916 45.455 0.00 0.00 0.00 1.40
2429 4388 8.695456 AGTGTCCAAAGATTTTGAAAATACACT 58.305 29.630 20.42 20.42 0.00 3.55
2502 4461 4.872691 CACCTTTCTATAAGTCTGCCACTG 59.127 45.833 0.00 0.00 34.56 3.66
2515 4474 0.392998 CCAGCACGGCACCTTTCTAT 60.393 55.000 0.00 0.00 0.00 1.98
2549 4508 1.244019 ACCTGCATCTTTGTTCGGGC 61.244 55.000 0.00 0.00 0.00 6.13
2552 4511 2.146342 ACAGACCTGCATCTTTGTTCG 58.854 47.619 0.00 0.00 0.00 3.95
2569 4528 4.386867 TCAATTACCGAGAAGGCTACAG 57.613 45.455 0.00 0.00 46.52 2.74
2626 4585 8.245195 TGCTGTCATGTAGGTGATAGTTTATA 57.755 34.615 0.00 0.00 38.94 0.98
2649 4612 6.851609 TGTCGGCAAATTATGGATAATATGC 58.148 36.000 0.00 0.00 32.91 3.14
2664 4627 4.640789 ACAAAATACAACTGTCGGCAAA 57.359 36.364 0.00 0.00 0.00 3.68
2667 4630 5.291293 ACATACAAAATACAACTGTCGGC 57.709 39.130 0.00 0.00 0.00 5.54
2669 4632 7.129622 ACACAACATACAAAATACAACTGTCG 58.870 34.615 0.00 0.00 0.00 4.35
2671 4634 8.347035 GGTACACAACATACAAAATACAACTGT 58.653 33.333 0.00 0.00 0.00 3.55
2680 4643 4.884744 AGCACAGGTACACAACATACAAAA 59.115 37.500 0.00 0.00 0.00 2.44
2710 4673 9.767600 GCAAAATGCTGTCAACAATTTGACCAG 62.768 40.741 17.15 11.64 46.14 4.00
2719 4682 1.850377 CGGCAAAATGCTGTCAACAA 58.150 45.000 3.00 0.00 44.43 2.83
2734 4697 3.003897 GTGAACATAAAAGGAACACGGCA 59.996 43.478 0.00 0.00 0.00 5.69
2737 4700 7.359262 TGATAGTGAACATAAAAGGAACACG 57.641 36.000 0.00 0.00 33.00 4.49
2772 4735 8.270080 TCCGTTAAACATCAAATAGCAATACA 57.730 30.769 0.00 0.00 0.00 2.29
2776 4739 8.270080 TGTATCCGTTAAACATCAAATAGCAA 57.730 30.769 0.00 0.00 0.00 3.91
2808 4771 5.954335 ACATGGCTTCTTGTAAATAACAGC 58.046 37.500 0.00 0.00 39.87 4.40
2877 4840 7.108847 CAGGGAAACTGTCAGAAGAATTAGAT 58.891 38.462 6.91 0.00 42.42 1.98
2914 4877 8.627403 CCTGATGCATAGTTTGAACATATTTCT 58.373 33.333 0.00 0.00 0.00 2.52
2922 4885 4.142600 GGTGACCTGATGCATAGTTTGAAC 60.143 45.833 0.00 0.00 0.00 3.18
2923 4886 4.009675 GGTGACCTGATGCATAGTTTGAA 58.990 43.478 0.00 0.00 0.00 2.69
2926 4889 3.521126 AGAGGTGACCTGATGCATAGTTT 59.479 43.478 9.89 0.00 31.76 2.66
2927 4890 3.110705 AGAGGTGACCTGATGCATAGTT 58.889 45.455 9.89 0.00 31.76 2.24
2929 4892 2.806019 GCAGAGGTGACCTGATGCATAG 60.806 54.545 25.48 0.00 40.55 2.23
2936 4899 0.764369 AAGTGGCAGAGGTGACCTGA 60.764 55.000 9.89 0.00 31.76 3.86
2982 4945 4.079844 TCAGGATTGGCAAGTGATGGATAA 60.080 41.667 5.96 0.00 0.00 1.75
3053 5016 4.464069 AGATAGCTCAAGTGGTGTTCTC 57.536 45.455 0.00 0.00 0.00 2.87
3130 5093 9.709495 TTCCATTCCTTGATACAAAAATGAAAG 57.291 29.630 14.84 0.00 0.00 2.62
3175 5146 6.010219 ACTGAAAATTGTATGGGTTAGTGCT 58.990 36.000 0.00 0.00 0.00 4.40
3176 5147 6.072175 TGACTGAAAATTGTATGGGTTAGTGC 60.072 38.462 0.00 0.00 0.00 4.40
3207 5178 1.683917 AGAGGATAGGTTACTGCAGCG 59.316 52.381 15.27 0.00 0.00 5.18
3208 5179 3.305744 GCTAGAGGATAGGTTACTGCAGC 60.306 52.174 15.27 0.00 0.00 5.25
3212 5183 4.645136 TGTGTGCTAGAGGATAGGTTACTG 59.355 45.833 0.00 0.00 0.00 2.74
3219 5190 2.034878 TGGCTGTGTGCTAGAGGATAG 58.965 52.381 0.00 0.00 42.39 2.08
3222 5193 1.757118 GTATGGCTGTGTGCTAGAGGA 59.243 52.381 0.00 0.00 42.39 3.71
3240 5211 8.296713 GGTTTGAGCATTAGAAATTCAAGTGTA 58.703 33.333 0.00 0.00 0.00 2.90
3257 5228 7.388460 ACAAATTTTGAAAATGGTTTGAGCA 57.612 28.000 15.81 0.00 32.53 4.26
3260 5231 9.631452 GGAAAACAAATTTTGAAAATGGTTTGA 57.369 25.926 22.85 0.00 38.17 2.69
3263 5234 8.801299 ACAGGAAAACAAATTTTGAAAATGGTT 58.199 25.926 15.81 9.07 38.17 3.67
3271 5242 5.942826 AGGCAAACAGGAAAACAAATTTTGA 59.057 32.000 15.81 0.00 38.17 2.69
3272 5243 6.028987 CAGGCAAACAGGAAAACAAATTTTG 58.971 36.000 7.59 7.59 38.17 2.44
3331 5310 5.355350 GCCAACTGTTATAGCAGACATTCTT 59.645 40.000 21.85 3.21 39.62 2.52
3345 5324 6.952773 ATTTTACAGACTTGCCAACTGTTA 57.047 33.333 6.08 0.00 43.27 2.41
3388 5367 3.315749 TGGACCGTTAACACCAAATGAAC 59.684 43.478 6.39 0.00 0.00 3.18
3421 5418 8.440059 TGATCTACGTGTTTCAATTTCACATAC 58.560 33.333 0.00 0.00 33.04 2.39
3433 5430 5.917541 TGGAAAAGTGATCTACGTGTTTC 57.082 39.130 0.00 4.58 32.95 2.78
3442 5439 9.844257 CTAGATTATTCCTTGGAAAAGTGATCT 57.156 33.333 6.16 9.30 0.00 2.75
3469 5466 9.494479 CAGCAACAGAATATGTGTTATAACTTG 57.506 33.333 16.33 9.20 43.00 3.16
3475 5472 8.510243 TGAATCAGCAACAGAATATGTGTTAT 57.490 30.769 3.92 0.00 43.00 1.89
3484 5481 5.779529 ACAGTTTGAATCAGCAACAGAAT 57.220 34.783 1.32 0.00 0.00 2.40
3490 5499 5.518848 ACATGAACAGTTTGAATCAGCAA 57.481 34.783 0.00 0.00 0.00 3.91
3531 5540 1.093159 GCTCATCTGCCTGGAACTTG 58.907 55.000 0.00 0.00 0.00 3.16
3561 5570 7.335171 CCAGAATTGACAGATTTGATAGTGTCA 59.665 37.037 0.00 0.00 45.79 3.58
3567 5576 5.193527 TCCCCCAGAATTGACAGATTTGATA 59.806 40.000 0.00 0.00 0.00 2.15
3711 5721 0.527565 CCCTGTGTTGCCTGCATAAC 59.472 55.000 0.00 0.00 0.00 1.89
3737 5747 9.268268 CAAGTACACCAATTCTACTGAAACTAA 57.732 33.333 0.00 0.00 35.63 2.24
3831 5842 5.810587 ACGTAGTCATGATAGCGACAATTTT 59.189 36.000 18.03 0.00 29.74 1.82
3834 5845 4.569761 ACGTAGTCATGATAGCGACAAT 57.430 40.909 18.03 0.00 29.74 2.71
3854 5865 2.960819 AGTACTGATTTCGGTGCTGAC 58.039 47.619 9.03 0.00 44.64 3.51
3856 5867 4.051922 GGATAGTACTGATTTCGGTGCTG 58.948 47.826 17.25 0.00 45.61 4.41
3864 5875 5.957771 TTCCAGCTGGATAGTACTGATTT 57.042 39.130 35.42 0.00 44.98 2.17
3881 5892 1.401905 GAAGCTACGGCCAATTTCCAG 59.598 52.381 2.24 0.00 39.73 3.86
3885 5896 1.544246 GGTTGAAGCTACGGCCAATTT 59.456 47.619 2.24 0.00 39.73 1.82
3890 5901 0.321298 TGAAGGTTGAAGCTACGGCC 60.321 55.000 0.00 0.00 39.73 6.13
3894 5905 3.211045 TGGTGTTGAAGGTTGAAGCTAC 58.789 45.455 0.00 0.00 0.00 3.58
3905 5916 0.605319 TAGCGGCCTTGGTGTTGAAG 60.605 55.000 0.00 0.00 0.00 3.02
3906 5917 0.179015 TTAGCGGCCTTGGTGTTGAA 60.179 50.000 0.00 0.00 0.00 2.69
3907 5918 0.887387 GTTAGCGGCCTTGGTGTTGA 60.887 55.000 0.00 0.00 0.00 3.18
3908 5919 1.579429 GTTAGCGGCCTTGGTGTTG 59.421 57.895 0.00 0.00 0.00 3.33
3909 5920 1.964373 CGTTAGCGGCCTTGGTGTT 60.964 57.895 0.00 0.00 0.00 3.32
3910 5921 2.358247 CGTTAGCGGCCTTGGTGT 60.358 61.111 0.00 0.00 0.00 4.16
3911 5922 3.799755 GCGTTAGCGGCCTTGGTG 61.800 66.667 0.00 0.00 38.78 4.17
3919 5930 1.078759 CAGAGTTCTGGCGTTAGCGG 61.079 60.000 0.00 0.00 46.35 5.52
3920 5931 2.363807 CAGAGTTCTGGCGTTAGCG 58.636 57.895 1.09 0.00 46.35 4.26
3926 5937 9.503675 AGGATACAATTCTACAGAGTTCTGGCG 62.504 44.444 13.30 4.28 44.18 5.69
3927 5938 6.407525 AGGATACAATTCTACAGAGTTCTGGC 60.408 42.308 13.30 0.00 44.18 4.85
3936 5947 6.296365 TCGACGTAGGATACAATTCTACAG 57.704 41.667 6.26 2.44 43.24 2.74
3940 5951 6.487331 AGAAGATCGACGTAGGATACAATTCT 59.513 38.462 1.88 6.90 43.24 2.40
3949 5960 3.943381 TGCTTAAGAAGATCGACGTAGGA 59.057 43.478 6.67 0.00 0.00 2.94
3951 5962 3.726730 GCTGCTTAAGAAGATCGACGTAG 59.273 47.826 15.22 0.00 0.00 3.51
3955 5966 1.855360 CCGCTGCTTAAGAAGATCGAC 59.145 52.381 15.22 0.00 0.00 4.20
3959 5970 2.419297 CCACTCCGCTGCTTAAGAAGAT 60.419 50.000 15.22 0.00 0.00 2.40
3963 5974 1.079127 GCCACTCCGCTGCTTAAGA 60.079 57.895 6.67 0.00 0.00 2.10
3964 5975 2.109126 GGCCACTCCGCTGCTTAAG 61.109 63.158 0.00 0.00 0.00 1.85
3974 5985 4.856509 ACTTTTCTTTATAGGGCCACTCC 58.143 43.478 6.18 0.00 0.00 3.85
3975 5986 5.746284 AGACTTTTCTTTATAGGGCCACTC 58.254 41.667 6.18 0.00 0.00 3.51
3976 5987 5.339282 GGAGACTTTTCTTTATAGGGCCACT 60.339 44.000 6.18 1.30 29.47 4.00
3980 5991 4.767478 ACGGAGACTTTTCTTTATAGGGC 58.233 43.478 0.00 0.00 29.47 5.19
3982 5993 6.535508 CCTGAACGGAGACTTTTCTTTATAGG 59.464 42.308 0.00 0.00 33.16 2.57
3983 5994 7.097834 ACCTGAACGGAGACTTTTCTTTATAG 58.902 38.462 0.00 0.00 36.31 1.31
3985 5996 5.866207 ACCTGAACGGAGACTTTTCTTTAT 58.134 37.500 0.00 0.00 36.31 1.40
3988 5999 3.134081 TGACCTGAACGGAGACTTTTCTT 59.866 43.478 0.00 0.00 36.31 2.52
3989 6000 2.698797 TGACCTGAACGGAGACTTTTCT 59.301 45.455 0.00 0.00 36.31 2.52
3990 6001 3.107642 TGACCTGAACGGAGACTTTTC 57.892 47.619 0.00 0.00 36.31 2.29
3991 6002 3.325135 AGATGACCTGAACGGAGACTTTT 59.675 43.478 0.00 0.00 36.31 2.27
3994 6005 2.096248 GAGATGACCTGAACGGAGACT 58.904 52.381 0.00 0.00 36.31 3.24
3995 6006 2.096248 AGAGATGACCTGAACGGAGAC 58.904 52.381 0.00 0.00 36.31 3.36
3996 6007 2.516227 AGAGATGACCTGAACGGAGA 57.484 50.000 0.00 0.00 36.31 3.71
3997 6008 3.283751 AGTAGAGATGACCTGAACGGAG 58.716 50.000 0.00 0.00 36.31 4.63
3998 6009 3.280295 GAGTAGAGATGACCTGAACGGA 58.720 50.000 0.00 0.00 36.31 4.69
3999 6010 3.017442 TGAGTAGAGATGACCTGAACGG 58.983 50.000 0.00 0.00 39.35 4.44
4000 6011 4.336713 TGATGAGTAGAGATGACCTGAACG 59.663 45.833 0.00 0.00 0.00 3.95
4001 6012 5.843673 TGATGAGTAGAGATGACCTGAAC 57.156 43.478 0.00 0.00 0.00 3.18
4003 6014 6.382282 ACAATTGATGAGTAGAGATGACCTGA 59.618 38.462 13.59 0.00 0.00 3.86
4004 6015 6.479331 CACAATTGATGAGTAGAGATGACCTG 59.521 42.308 13.59 0.00 0.00 4.00
4006 6017 6.577103 TCACAATTGATGAGTAGAGATGACC 58.423 40.000 13.59 0.00 0.00 4.02
4007 6018 8.659925 ATTCACAATTGATGAGTAGAGATGAC 57.340 34.615 13.59 0.00 0.00 3.06
4008 6019 9.322773 GAATTCACAATTGATGAGTAGAGATGA 57.677 33.333 13.59 0.00 0.00 2.92
4009 6020 9.106070 TGAATTCACAATTGATGAGTAGAGATG 57.894 33.333 13.59 0.00 0.00 2.90
4019 6044 9.797556 AATCAGTACATGAATTCACAATTGATG 57.202 29.630 13.59 5.85 44.65 3.07
4027 6052 7.798596 ATCTCCAATCAGTACATGAATTCAC 57.201 36.000 11.07 0.00 42.53 3.18
4065 6090 9.516314 GTTGCATTTTTGGAGAATATTACCTAC 57.484 33.333 10.99 0.00 0.00 3.18
4083 6108 2.029649 CAGCAGCCTAACAGTTGCATTT 60.030 45.455 0.00 0.00 38.97 2.32
4104 6129 1.558233 AGTGTGTCCAGTAGGCTACC 58.442 55.000 20.67 6.39 33.74 3.18
4158 6183 4.245660 CGCAGAGGATGTTTGAGTAAAGA 58.754 43.478 0.00 0.00 0.00 2.52
4161 6186 2.289382 TGCGCAGAGGATGTTTGAGTAA 60.289 45.455 5.66 0.00 0.00 2.24
4206 6231 1.371183 CTTGACCTCGACCTTGCCA 59.629 57.895 0.00 0.00 0.00 4.92
4231 6264 0.393820 TCGTTGTACCCAGGAACCAC 59.606 55.000 0.00 0.00 0.00 4.16
4239 6272 0.963962 GTCCAGTCTCGTTGTACCCA 59.036 55.000 0.00 0.00 0.00 4.51
4254 6287 4.631740 TGAGACAGGGCGGGTCCA 62.632 66.667 3.87 0.46 35.89 4.02
4287 6320 0.758123 TGAAGTCGGGGTAACGGTTT 59.242 50.000 0.00 0.00 37.60 3.27
4422 6455 2.044352 TGCGAGACGATGGAGGGA 60.044 61.111 0.00 0.00 0.00 4.20
4598 6632 4.920640 TGACGCCTTTTTGGTTAAATCA 57.079 36.364 0.00 0.00 38.35 2.57
4617 6652 7.421530 CTGACTAAGGAAAGAAAACGAATGA 57.578 36.000 0.00 0.00 0.00 2.57
4673 8891 9.431887 ACAACTACAAGGTATTACAATGTACTG 57.568 33.333 0.00 8.87 0.00 2.74
4719 9062 6.210287 ACAACTAATACTCTAGGTCACAGC 57.790 41.667 0.00 0.00 0.00 4.40
4720 9063 8.904834 ACATACAACTAATACTCTAGGTCACAG 58.095 37.037 0.00 0.00 0.00 3.66
4721 9064 8.818622 ACATACAACTAATACTCTAGGTCACA 57.181 34.615 0.00 0.00 0.00 3.58
4724 9067 9.896263 GCTAACATACAACTAATACTCTAGGTC 57.104 37.037 0.00 0.00 0.00 3.85
4725 9068 9.643735 AGCTAACATACAACTAATACTCTAGGT 57.356 33.333 0.00 0.00 0.00 3.08
4726 9069 9.900710 CAGCTAACATACAACTAATACTCTAGG 57.099 37.037 0.00 0.00 0.00 3.02
4729 9072 8.967918 TCACAGCTAACATACAACTAATACTCT 58.032 33.333 0.00 0.00 0.00 3.24
4730 9073 9.239002 CTCACAGCTAACATACAACTAATACTC 57.761 37.037 0.00 0.00 0.00 2.59
4731 9074 7.707035 GCTCACAGCTAACATACAACTAATACT 59.293 37.037 0.00 0.00 38.45 2.12
4732 9075 7.842484 GCTCACAGCTAACATACAACTAATAC 58.158 38.462 0.00 0.00 38.45 1.89
4734 9077 6.910536 GCTCACAGCTAACATACAACTAAT 57.089 37.500 0.00 0.00 38.45 1.73
4972 9381 8.665643 TGTCGTTGAAATTTTCTAGTTAAGGA 57.334 30.769 10.33 4.61 0.00 3.36
5002 9411 3.814283 GAGAGGCCACAGATTGATTGATC 59.186 47.826 5.01 0.00 0.00 2.92
5014 9424 2.327325 AAGGAACTAGAGAGGCCACA 57.673 50.000 5.01 0.00 38.49 4.17
5019 9429 3.839293 CACACGAAAGGAACTAGAGAGG 58.161 50.000 0.00 0.00 38.49 3.69
5041 9451 5.526479 AGAGCATAAACAGTGCATGATGTAG 59.474 40.000 0.00 0.00 44.87 2.74
5055 9465 8.296713 TGTCAAGGTCAAATTTAGAGCATAAAC 58.703 33.333 16.60 11.38 36.03 2.01
5086 9501 1.420514 GGGATTTAGTGGGGGAGTAGC 59.579 57.143 0.00 0.00 0.00 3.58
5197 9625 1.568504 TATCAAGGACGCCAGGACTT 58.431 50.000 0.00 0.00 0.00 3.01
5210 9638 3.384668 CACGTGGTAGAGGCATATCAAG 58.615 50.000 7.95 0.00 0.00 3.02
5214 9642 0.393077 GGCACGTGGTAGAGGCATAT 59.607 55.000 18.88 0.00 0.00 1.78
5236 9667 2.284258 AGAGCGAGAAGGCCCTGT 60.284 61.111 0.00 0.00 0.00 4.00
5238 9669 2.762043 GGAGAGCGAGAAGGCCCT 60.762 66.667 0.00 0.00 0.00 5.19
5273 9704 2.359850 GAACCAGCACCGGCATCA 60.360 61.111 0.00 0.00 44.61 3.07
5276 9707 4.980805 GACGAACCAGCACCGGCA 62.981 66.667 0.00 0.00 44.61 5.69
5285 9716 1.624487 CGACAATGATCGACGAACCA 58.376 50.000 0.00 3.53 45.13 3.67
5309 9740 0.038251 GTGGACTGATGAGTGCGTCA 60.038 55.000 0.00 0.00 43.32 4.35
5398 9829 2.076622 GAAGCTAGCCATCTCGCCGA 62.077 60.000 12.13 0.00 31.96 5.54
5438 9869 1.912043 CTGTCCTTCTCTGGGGTGATT 59.088 52.381 0.00 0.00 0.00 2.57
5450 9887 4.704833 TGCGGCAGGCTGTCCTTC 62.705 66.667 14.46 10.80 41.93 3.46
5472 9909 3.461773 CATCCTCCTGTCGCCGGT 61.462 66.667 1.90 0.00 0.00 5.28
5474 9911 4.899239 GCCATCCTCCTGTCGCCG 62.899 72.222 0.00 0.00 0.00 6.46
5480 9917 0.182299 GGAAGAAGGCCATCCTCCTG 59.818 60.000 16.88 0.00 43.40 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.