Multiple sequence alignment - TraesCS7B01G413400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G413400 chr7B 100.000 2441 0 0 1 2441 681749543 681751983 0.000000e+00 4508.0
1 TraesCS7B01G413400 chr7B 98.132 1231 14 2 1220 2441 681780146 681781376 0.000000e+00 2137.0
2 TraesCS7B01G413400 chr7B 90.719 765 44 9 474 1223 681769391 681770143 0.000000e+00 994.0
3 TraesCS7B01G413400 chr7B 78.306 862 111 56 644 1449 682791787 682790946 1.010000e-133 486.0
4 TraesCS7B01G413400 chr7B 82.707 532 44 32 1030 1529 682886373 682885858 1.730000e-116 429.0
5 TraesCS7B01G413400 chr7B 88.043 92 8 1 388 476 681769219 681769310 3.320000e-19 106.0
6 TraesCS7B01G413400 chr7B 75.576 217 23 16 701 901 682886679 682886477 2.010000e-11 80.5
7 TraesCS7B01G413400 chr7B 100.000 28 0 0 346 373 629500611 629500584 4.000000e-03 52.8
8 TraesCS7B01G413400 chr7A 86.541 1538 96 42 511 1992 693838113 693839595 0.000000e+00 1591.0
9 TraesCS7B01G413400 chr7A 78.550 993 112 57 790 1690 693815349 693816332 5.890000e-156 560.0
10 TraesCS7B01G413400 chr7A 83.940 604 52 15 868 1446 694022701 694022118 9.930000e-149 536.0
11 TraesCS7B01G413400 chr7A 80.319 376 49 13 1996 2369 9457871 9458223 6.690000e-66 261.0
12 TraesCS7B01G413400 chr7A 77.419 279 32 16 2073 2323 157602034 157601759 1.180000e-28 137.0
13 TraesCS7B01G413400 chr7A 84.559 136 16 4 1991 2124 157602084 157601952 1.970000e-26 130.0
14 TraesCS7B01G413400 chr7A 82.946 129 22 0 1982 2110 62730669 62730541 1.530000e-22 117.0
15 TraesCS7B01G413400 chr7A 83.721 129 10 6 390 518 693837841 693837958 7.130000e-21 111.0
16 TraesCS7B01G413400 chr7A 78.333 180 11 7 642 810 694023697 694023535 9.290000e-15 91.6
17 TraesCS7B01G413400 chr7A 81.609 87 11 3 701 787 694093450 694093369 1.570000e-07 67.6
18 TraesCS7B01G413400 chr7D 85.300 1415 118 48 369 1722 602072225 602073610 0.000000e+00 1378.0
19 TraesCS7B01G413400 chr7D 77.797 1135 134 65 645 1690 602042500 602043605 2.090000e-165 592.0
20 TraesCS7B01G413400 chr7D 82.657 542 61 24 1013 1535 602197064 602197591 1.330000e-122 449.0
21 TraesCS7B01G413400 chr7D 85.000 460 44 12 1004 1443 602294986 602294532 6.190000e-121 444.0
22 TraesCS7B01G413400 chr7D 84.028 432 36 17 651 1079 602195034 602194633 3.810000e-103 385.0
23 TraesCS7B01G413400 chr7D 74.888 669 98 49 650 1256 602410262 602409602 8.720000e-60 241.0
24 TraesCS7B01G413400 chr7D 89.706 68 2 3 826 893 602196905 602196967 5.590000e-12 82.4
25 TraesCS7B01G413400 chr1B 99.476 382 2 0 1988 2369 513429286 513429667 0.000000e+00 695.0
26 TraesCS7B01G413400 chr4D 92.051 390 18 7 1991 2368 435232494 435232882 9.930000e-149 536.0
27 TraesCS7B01G413400 chrUn 87.613 444 42 8 1011 1443 87232356 87231915 1.010000e-138 503.0
28 TraesCS7B01G413400 chrUn 80.035 576 66 25 1191 1719 87260255 87259682 4.930000e-102 381.0
29 TraesCS7B01G413400 chrUn 80.035 576 66 25 1191 1719 235076114 235075541 4.930000e-102 381.0
30 TraesCS7B01G413400 chrUn 89.305 187 20 0 1984 2170 89036387 89036201 4.060000e-58 235.0
31 TraesCS7B01G413400 chr6B 92.114 317 23 2 1 317 390491272 390490958 1.720000e-121 446.0
32 TraesCS7B01G413400 chr5A 92.308 312 21 3 6 317 709281591 709281283 8.010000e-120 440.0
33 TraesCS7B01G413400 chr3A 90.135 223 17 4 55 277 66248603 66248820 3.970000e-73 285.0
34 TraesCS7B01G413400 chr5B 80.890 382 48 13 1990 2369 460657976 460657618 6.650000e-71 278.0
35 TraesCS7B01G413400 chr1D 79.251 347 46 18 1991 2336 435281618 435281297 4.090000e-53 219.0
36 TraesCS7B01G413400 chr2B 86.139 202 25 2 2170 2369 799654606 799654806 5.290000e-52 215.0
37 TraesCS7B01G413400 chr2B 80.519 154 30 0 1985 2138 152840253 152840406 4.260000e-23 119.0
38 TraesCS7B01G413400 chr4A 78.348 351 45 18 1987 2336 655670090 655669770 5.320000e-47 198.0
39 TraesCS7B01G413400 chr4B 100.000 28 0 0 369 396 443592783 443592810 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G413400 chr7B 681749543 681751983 2440 False 4508.00 4508 100.0000 1 2441 1 chr7B.!!$F1 2440
1 TraesCS7B01G413400 chr7B 681780146 681781376 1230 False 2137.00 2137 98.1320 1220 2441 1 chr7B.!!$F2 1221
2 TraesCS7B01G413400 chr7B 681769219 681770143 924 False 550.00 994 89.3810 388 1223 2 chr7B.!!$F3 835
3 TraesCS7B01G413400 chr7B 682790946 682791787 841 True 486.00 486 78.3060 644 1449 1 chr7B.!!$R2 805
4 TraesCS7B01G413400 chr7B 682885858 682886679 821 True 254.75 429 79.1415 701 1529 2 chr7B.!!$R3 828
5 TraesCS7B01G413400 chr7A 693837841 693839595 1754 False 851.00 1591 85.1310 390 1992 2 chr7A.!!$F3 1602
6 TraesCS7B01G413400 chr7A 693815349 693816332 983 False 560.00 560 78.5500 790 1690 1 chr7A.!!$F2 900
7 TraesCS7B01G413400 chr7A 694022118 694023697 1579 True 313.80 536 81.1365 642 1446 2 chr7A.!!$R4 804
8 TraesCS7B01G413400 chr7D 602072225 602073610 1385 False 1378.00 1378 85.3000 369 1722 1 chr7D.!!$F2 1353
9 TraesCS7B01G413400 chr7D 602042500 602043605 1105 False 592.00 592 77.7970 645 1690 1 chr7D.!!$F1 1045
10 TraesCS7B01G413400 chr7D 602196905 602197591 686 False 265.70 449 86.1815 826 1535 2 chr7D.!!$F3 709
11 TraesCS7B01G413400 chr7D 602409602 602410262 660 True 241.00 241 74.8880 650 1256 1 chr7D.!!$R3 606
12 TraesCS7B01G413400 chrUn 87259682 87260255 573 True 381.00 381 80.0350 1191 1719 1 chrUn.!!$R2 528
13 TraesCS7B01G413400 chrUn 235075541 235076114 573 True 381.00 381 80.0350 1191 1719 1 chrUn.!!$R4 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.035458 GTGGCAGCCTAGTTCACAGT 59.965 55.0 14.15 0.0 0.00 3.55 F
170 171 0.035458 GGGTCCGCAAGATGGGATAG 59.965 60.0 0.00 0.0 43.02 2.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 2122 0.391793 GCAGGTTGAGCACTACTCCC 60.392 60.0 0.0 0.0 45.61 4.3 R
2008 3249 1.612676 TCGAAAGAGTTGAGGGACGA 58.387 50.0 0.0 0.0 34.84 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.874977 GCTACAGACCGGCGGCTC 62.875 72.222 28.71 21.78 0.00 4.70
23 24 4.554363 CTACAGACCGGCGGCTCG 62.554 72.222 28.71 16.81 0.00 5.03
36 37 2.266055 GCTCGTGGCAGCCTAGTT 59.734 61.111 14.15 0.00 41.35 2.24
37 38 1.811679 GCTCGTGGCAGCCTAGTTC 60.812 63.158 14.15 0.00 41.35 3.01
38 39 1.591703 CTCGTGGCAGCCTAGTTCA 59.408 57.895 14.15 0.00 0.00 3.18
39 40 0.737715 CTCGTGGCAGCCTAGTTCAC 60.738 60.000 14.15 0.00 0.00 3.18
40 41 1.005037 CGTGGCAGCCTAGTTCACA 60.005 57.895 14.15 0.00 0.00 3.58
41 42 1.016130 CGTGGCAGCCTAGTTCACAG 61.016 60.000 14.15 0.00 0.00 3.66
42 43 0.035458 GTGGCAGCCTAGTTCACAGT 59.965 55.000 14.15 0.00 0.00 3.55
43 44 0.321671 TGGCAGCCTAGTTCACAGTC 59.678 55.000 14.15 0.00 0.00 3.51
44 45 0.737715 GGCAGCCTAGTTCACAGTCG 60.738 60.000 3.29 0.00 0.00 4.18
45 46 0.038159 GCAGCCTAGTTCACAGTCGT 60.038 55.000 0.00 0.00 0.00 4.34
46 47 1.201647 GCAGCCTAGTTCACAGTCGTA 59.798 52.381 0.00 0.00 0.00 3.43
47 48 2.732597 GCAGCCTAGTTCACAGTCGTAG 60.733 54.545 0.00 0.00 0.00 3.51
48 49 2.488545 CAGCCTAGTTCACAGTCGTAGT 59.511 50.000 0.00 0.00 0.00 2.73
49 50 2.488545 AGCCTAGTTCACAGTCGTAGTG 59.511 50.000 0.00 0.00 38.32 2.74
50 51 2.228343 GCCTAGTTCACAGTCGTAGTGT 59.772 50.000 0.00 0.00 38.16 3.55
51 52 3.670091 GCCTAGTTCACAGTCGTAGTGTC 60.670 52.174 0.00 0.00 38.16 3.67
52 53 3.752222 CCTAGTTCACAGTCGTAGTGTCT 59.248 47.826 0.00 0.00 38.16 3.41
53 54 3.627732 AGTTCACAGTCGTAGTGTCTG 57.372 47.619 0.00 0.00 38.16 3.51
54 55 2.950309 AGTTCACAGTCGTAGTGTCTGT 59.050 45.455 0.00 0.00 42.14 3.41
55 56 3.003482 AGTTCACAGTCGTAGTGTCTGTC 59.997 47.826 0.00 0.00 39.89 3.51
56 57 1.878088 TCACAGTCGTAGTGTCTGTCC 59.122 52.381 0.00 0.00 39.89 4.02
57 58 1.607148 CACAGTCGTAGTGTCTGTCCA 59.393 52.381 0.00 0.00 39.89 4.02
58 59 2.229062 CACAGTCGTAGTGTCTGTCCAT 59.771 50.000 0.00 0.00 39.89 3.41
59 60 2.229062 ACAGTCGTAGTGTCTGTCCATG 59.771 50.000 0.00 0.00 37.84 3.66
60 61 1.202582 AGTCGTAGTGTCTGTCCATGC 59.797 52.381 0.00 0.00 0.00 4.06
61 62 1.202582 GTCGTAGTGTCTGTCCATGCT 59.797 52.381 0.00 0.00 0.00 3.79
62 63 1.893137 TCGTAGTGTCTGTCCATGCTT 59.107 47.619 0.00 0.00 0.00 3.91
63 64 2.094700 TCGTAGTGTCTGTCCATGCTTC 60.095 50.000 0.00 0.00 0.00 3.86
64 65 2.094494 CGTAGTGTCTGTCCATGCTTCT 60.094 50.000 0.00 0.00 0.00 2.85
65 66 3.615110 CGTAGTGTCTGTCCATGCTTCTT 60.615 47.826 0.00 0.00 0.00 2.52
66 67 3.051081 AGTGTCTGTCCATGCTTCTTC 57.949 47.619 0.00 0.00 0.00 2.87
67 68 2.369860 AGTGTCTGTCCATGCTTCTTCA 59.630 45.455 0.00 0.00 0.00 3.02
68 69 2.481952 GTGTCTGTCCATGCTTCTTCAC 59.518 50.000 0.00 0.00 0.00 3.18
69 70 2.369860 TGTCTGTCCATGCTTCTTCACT 59.630 45.455 0.00 0.00 0.00 3.41
70 71 2.999355 GTCTGTCCATGCTTCTTCACTC 59.001 50.000 0.00 0.00 0.00 3.51
71 72 2.634453 TCTGTCCATGCTTCTTCACTCA 59.366 45.455 0.00 0.00 0.00 3.41
72 73 3.001414 CTGTCCATGCTTCTTCACTCAG 58.999 50.000 0.00 0.00 0.00 3.35
73 74 2.289882 TGTCCATGCTTCTTCACTCAGG 60.290 50.000 0.00 0.00 0.00 3.86
74 75 1.280133 TCCATGCTTCTTCACTCAGGG 59.720 52.381 0.00 0.00 0.00 4.45
75 76 1.280133 CCATGCTTCTTCACTCAGGGA 59.720 52.381 0.00 0.00 32.65 4.20
76 77 2.290514 CCATGCTTCTTCACTCAGGGAA 60.291 50.000 0.00 0.00 32.65 3.97
77 78 3.618351 CATGCTTCTTCACTCAGGGAAT 58.382 45.455 0.00 0.00 0.00 3.01
78 79 3.340814 TGCTTCTTCACTCAGGGAATC 57.659 47.619 0.00 0.00 0.00 2.52
79 80 2.639347 TGCTTCTTCACTCAGGGAATCA 59.361 45.455 0.00 0.00 0.00 2.57
80 81 3.269178 GCTTCTTCACTCAGGGAATCAG 58.731 50.000 0.00 0.00 0.00 2.90
81 82 3.055530 GCTTCTTCACTCAGGGAATCAGA 60.056 47.826 0.00 0.00 0.00 3.27
82 83 4.564406 GCTTCTTCACTCAGGGAATCAGAA 60.564 45.833 0.00 0.00 0.00 3.02
83 84 4.815533 TCTTCACTCAGGGAATCAGAAG 57.184 45.455 0.00 0.00 34.01 2.85
84 85 3.517100 TCTTCACTCAGGGAATCAGAAGG 59.483 47.826 0.00 0.00 33.65 3.46
85 86 2.191400 TCACTCAGGGAATCAGAAGGG 58.809 52.381 0.00 0.00 0.00 3.95
86 87 2.191400 CACTCAGGGAATCAGAAGGGA 58.809 52.381 0.00 0.00 0.00 4.20
87 88 2.170187 CACTCAGGGAATCAGAAGGGAG 59.830 54.545 0.00 0.00 0.00 4.30
88 89 1.140652 CTCAGGGAATCAGAAGGGAGC 59.859 57.143 0.00 0.00 0.00 4.70
89 90 0.179062 CAGGGAATCAGAAGGGAGCG 60.179 60.000 0.00 0.00 0.00 5.03
90 91 1.147153 GGGAATCAGAAGGGAGCGG 59.853 63.158 0.00 0.00 0.00 5.52
91 92 1.524849 GGAATCAGAAGGGAGCGGC 60.525 63.158 0.00 0.00 0.00 6.53
92 93 1.884926 GAATCAGAAGGGAGCGGCG 60.885 63.158 0.51 0.51 0.00 6.46
93 94 2.298158 GAATCAGAAGGGAGCGGCGA 62.298 60.000 12.98 0.00 0.00 5.54
94 95 2.579684 AATCAGAAGGGAGCGGCGAC 62.580 60.000 12.98 3.05 0.00 5.19
106 107 4.104143 GGCGACGGGTACAGATTG 57.896 61.111 0.00 0.00 0.00 2.67
107 108 1.514087 GGCGACGGGTACAGATTGA 59.486 57.895 0.00 0.00 0.00 2.57
108 109 0.527817 GGCGACGGGTACAGATTGAG 60.528 60.000 0.00 0.00 0.00 3.02
109 110 0.527817 GCGACGGGTACAGATTGAGG 60.528 60.000 0.00 0.00 0.00 3.86
110 111 0.815734 CGACGGGTACAGATTGAGGT 59.184 55.000 0.00 0.00 0.00 3.85
111 112 1.469251 CGACGGGTACAGATTGAGGTG 60.469 57.143 0.00 0.00 0.00 4.00
112 113 0.902531 ACGGGTACAGATTGAGGTGG 59.097 55.000 0.00 0.00 0.00 4.61
113 114 0.902531 CGGGTACAGATTGAGGTGGT 59.097 55.000 0.00 0.00 0.00 4.16
114 115 1.278127 CGGGTACAGATTGAGGTGGTT 59.722 52.381 0.00 0.00 0.00 3.67
115 116 2.498481 CGGGTACAGATTGAGGTGGTTA 59.502 50.000 0.00 0.00 0.00 2.85
116 117 3.677976 CGGGTACAGATTGAGGTGGTTAC 60.678 52.174 0.00 0.00 0.00 2.50
117 118 3.262405 GGGTACAGATTGAGGTGGTTACA 59.738 47.826 0.00 0.00 0.00 2.41
118 119 4.263156 GGGTACAGATTGAGGTGGTTACAA 60.263 45.833 0.00 0.00 0.00 2.41
119 120 4.935808 GGTACAGATTGAGGTGGTTACAAG 59.064 45.833 0.00 0.00 0.00 3.16
120 121 4.974645 ACAGATTGAGGTGGTTACAAGA 57.025 40.909 0.00 0.00 0.00 3.02
121 122 4.642429 ACAGATTGAGGTGGTTACAAGAC 58.358 43.478 0.00 0.00 0.00 3.01
122 123 4.348168 ACAGATTGAGGTGGTTACAAGACT 59.652 41.667 0.00 0.00 0.00 3.24
123 124 5.542635 ACAGATTGAGGTGGTTACAAGACTA 59.457 40.000 0.00 0.00 0.00 2.59
124 125 6.102663 CAGATTGAGGTGGTTACAAGACTAG 58.897 44.000 0.00 0.00 0.00 2.57
125 126 3.955650 TGAGGTGGTTACAAGACTAGC 57.044 47.619 0.00 0.00 0.00 3.42
126 127 3.507411 TGAGGTGGTTACAAGACTAGCT 58.493 45.455 0.00 0.00 40.80 3.32
127 128 4.112716 GAGGTGGTTACAAGACTAGCTC 57.887 50.000 0.00 5.15 44.43 4.09
128 129 3.507411 AGGTGGTTACAAGACTAGCTCA 58.493 45.455 0.00 0.00 34.34 4.26
129 130 3.258622 AGGTGGTTACAAGACTAGCTCAC 59.741 47.826 0.00 0.00 34.34 3.51
130 131 3.243336 GTGGTTACAAGACTAGCTCACG 58.757 50.000 0.00 0.00 0.00 4.35
131 132 2.230508 TGGTTACAAGACTAGCTCACGG 59.769 50.000 0.00 0.00 0.00 4.94
132 133 2.260481 GTTACAAGACTAGCTCACGGC 58.740 52.381 0.00 0.00 42.19 5.68
133 134 0.815734 TACAAGACTAGCTCACGGCC 59.184 55.000 0.00 0.00 43.05 6.13
134 135 1.517257 CAAGACTAGCTCACGGCCG 60.517 63.158 26.86 26.86 43.05 6.13
135 136 1.977544 AAGACTAGCTCACGGCCGT 60.978 57.895 28.70 28.70 43.05 5.68
136 137 1.533469 AAGACTAGCTCACGGCCGTT 61.533 55.000 32.11 17.76 43.05 4.44
137 138 1.516603 GACTAGCTCACGGCCGTTC 60.517 63.158 32.11 18.61 43.05 3.95
138 139 2.202756 CTAGCTCACGGCCGTTCC 60.203 66.667 32.11 19.52 43.05 3.62
139 140 2.992689 TAGCTCACGGCCGTTCCA 60.993 61.111 32.11 14.93 43.05 3.53
140 141 2.298158 CTAGCTCACGGCCGTTCCAT 62.298 60.000 32.11 17.84 43.05 3.41
141 142 2.572095 TAGCTCACGGCCGTTCCATG 62.572 60.000 32.11 17.99 43.05 3.66
142 143 3.499737 CTCACGGCCGTTCCATGC 61.500 66.667 32.11 0.00 34.01 4.06
143 144 3.958147 CTCACGGCCGTTCCATGCT 62.958 63.158 32.11 0.00 34.01 3.79
144 145 3.055719 CACGGCCGTTCCATGCTT 61.056 61.111 32.11 0.00 34.01 3.91
145 146 3.055719 ACGGCCGTTCCATGCTTG 61.056 61.111 28.70 0.00 34.01 4.01
146 147 2.745884 CGGCCGTTCCATGCTTGA 60.746 61.111 19.50 0.00 34.01 3.02
147 148 2.877691 GGCCGTTCCATGCTTGAC 59.122 61.111 0.22 0.00 34.01 3.18
148 149 1.675641 GGCCGTTCCATGCTTGACT 60.676 57.895 0.22 0.00 34.01 3.41
149 150 1.648467 GGCCGTTCCATGCTTGACTC 61.648 60.000 0.22 0.00 34.01 3.36
150 151 1.648467 GCCGTTCCATGCTTGACTCC 61.648 60.000 0.22 0.00 0.00 3.85
151 152 1.361668 CCGTTCCATGCTTGACTCCG 61.362 60.000 0.22 0.00 0.00 4.63
152 153 1.361668 CGTTCCATGCTTGACTCCGG 61.362 60.000 0.00 0.00 0.00 5.14
153 154 1.026718 GTTCCATGCTTGACTCCGGG 61.027 60.000 0.00 0.00 0.00 5.73
154 155 1.488705 TTCCATGCTTGACTCCGGGT 61.489 55.000 0.00 0.00 0.00 5.28
155 156 1.450312 CCATGCTTGACTCCGGGTC 60.450 63.158 14.17 14.17 44.70 4.46
156 157 1.450312 CATGCTTGACTCCGGGTCC 60.450 63.158 17.20 5.96 43.89 4.46
157 158 3.019003 ATGCTTGACTCCGGGTCCG 62.019 63.158 17.20 1.86 43.89 4.79
159 160 3.691342 CTTGACTCCGGGTCCGCA 61.691 66.667 17.20 0.86 43.89 5.69
160 161 3.234630 CTTGACTCCGGGTCCGCAA 62.235 63.158 17.20 7.89 43.89 4.85
161 162 3.234630 TTGACTCCGGGTCCGCAAG 62.235 63.158 17.20 6.23 43.89 4.01
162 163 3.379445 GACTCCGGGTCCGCAAGA 61.379 66.667 0.00 2.80 38.93 3.02
163 164 2.683933 ACTCCGGGTCCGCAAGAT 60.684 61.111 0.00 0.66 43.02 2.40
164 165 2.202932 CTCCGGGTCCGCAAGATG 60.203 66.667 0.00 0.00 43.02 2.90
165 166 3.740128 CTCCGGGTCCGCAAGATGG 62.740 68.421 0.00 0.00 43.02 3.51
166 167 4.856801 CCGGGTCCGCAAGATGGG 62.857 72.222 3.52 0.00 43.02 4.00
167 168 3.781307 CGGGTCCGCAAGATGGGA 61.781 66.667 0.00 0.00 43.02 4.37
168 169 2.919043 GGGTCCGCAAGATGGGAT 59.081 61.111 0.00 0.00 43.02 3.85
169 170 1.754380 CGGGTCCGCAAGATGGGATA 61.754 60.000 0.00 0.00 43.02 2.59
170 171 0.035458 GGGTCCGCAAGATGGGATAG 59.965 60.000 0.00 0.00 43.02 2.08
171 172 0.035458 GGTCCGCAAGATGGGATAGG 59.965 60.000 0.00 0.00 43.02 2.57
172 173 0.035458 GTCCGCAAGATGGGATAGGG 59.965 60.000 0.00 0.00 43.02 3.53
173 174 1.127567 TCCGCAAGATGGGATAGGGG 61.128 60.000 0.00 0.00 43.02 4.79
174 175 1.127567 CCGCAAGATGGGATAGGGGA 61.128 60.000 0.00 0.00 43.02 4.81
175 176 0.764890 CGCAAGATGGGATAGGGGAA 59.235 55.000 0.00 0.00 43.02 3.97
176 177 1.271054 CGCAAGATGGGATAGGGGAAG 60.271 57.143 0.00 0.00 43.02 3.46
177 178 2.057922 GCAAGATGGGATAGGGGAAGA 58.942 52.381 0.00 0.00 0.00 2.87
178 179 2.443255 GCAAGATGGGATAGGGGAAGAA 59.557 50.000 0.00 0.00 0.00 2.52
179 180 3.497584 GCAAGATGGGATAGGGGAAGAAG 60.498 52.174 0.00 0.00 0.00 2.85
180 181 3.976654 CAAGATGGGATAGGGGAAGAAGA 59.023 47.826 0.00 0.00 0.00 2.87
181 182 4.302004 AGATGGGATAGGGGAAGAAGAA 57.698 45.455 0.00 0.00 0.00 2.52
182 183 4.849129 AGATGGGATAGGGGAAGAAGAAT 58.151 43.478 0.00 0.00 0.00 2.40
183 184 5.994629 AGATGGGATAGGGGAAGAAGAATA 58.005 41.667 0.00 0.00 0.00 1.75
184 185 5.788014 AGATGGGATAGGGGAAGAAGAATAC 59.212 44.000 0.00 0.00 0.00 1.89
185 186 3.901844 TGGGATAGGGGAAGAAGAATACG 59.098 47.826 0.00 0.00 0.00 3.06
186 187 3.902467 GGGATAGGGGAAGAAGAATACGT 59.098 47.826 0.00 0.00 0.00 3.57
187 188 5.082425 GGGATAGGGGAAGAAGAATACGTA 58.918 45.833 0.00 0.00 0.00 3.57
188 189 5.047448 GGGATAGGGGAAGAAGAATACGTAC 60.047 48.000 0.00 0.00 0.00 3.67
189 190 5.335504 GGATAGGGGAAGAAGAATACGTACG 60.336 48.000 15.01 15.01 0.00 3.67
190 191 2.100418 AGGGGAAGAAGAATACGTACGC 59.900 50.000 16.72 0.00 0.00 4.42
191 192 2.114825 GGGAAGAAGAATACGTACGCG 58.885 52.381 16.72 3.53 44.93 6.01
192 193 2.223340 GGGAAGAAGAATACGTACGCGA 60.223 50.000 15.93 3.70 42.00 5.87
193 194 3.034562 GGAAGAAGAATACGTACGCGAG 58.965 50.000 15.93 6.25 42.00 5.03
194 195 2.752144 AGAAGAATACGTACGCGAGG 57.248 50.000 15.93 4.80 42.00 4.63
195 196 2.283298 AGAAGAATACGTACGCGAGGA 58.717 47.619 15.93 0.00 42.00 3.71
196 197 2.679837 AGAAGAATACGTACGCGAGGAA 59.320 45.455 15.93 0.00 42.00 3.36
197 198 3.127548 AGAAGAATACGTACGCGAGGAAA 59.872 43.478 15.93 0.00 42.00 3.13
198 199 3.492421 AGAATACGTACGCGAGGAAAA 57.508 42.857 15.93 0.00 42.00 2.29
199 200 4.037858 AGAATACGTACGCGAGGAAAAT 57.962 40.909 15.93 0.00 42.00 1.82
200 201 5.173774 AGAATACGTACGCGAGGAAAATA 57.826 39.130 15.93 0.00 42.00 1.40
201 202 4.972440 AGAATACGTACGCGAGGAAAATAC 59.028 41.667 15.93 1.24 42.00 1.89
202 203 1.913317 ACGTACGCGAGGAAAATACC 58.087 50.000 15.93 0.00 42.00 2.73
203 204 1.474077 ACGTACGCGAGGAAAATACCT 59.526 47.619 15.93 0.00 43.64 3.08
204 205 1.850441 CGTACGCGAGGAAAATACCTG 59.150 52.381 15.93 0.00 40.73 4.00
205 206 2.199236 GTACGCGAGGAAAATACCTGG 58.801 52.381 15.93 0.00 40.73 4.45
206 207 0.899720 ACGCGAGGAAAATACCTGGA 59.100 50.000 15.93 0.00 40.73 3.86
207 208 1.134788 ACGCGAGGAAAATACCTGGAG 60.135 52.381 15.93 0.00 40.73 3.86
208 209 1.134788 CGCGAGGAAAATACCTGGAGT 60.135 52.381 0.00 0.00 40.73 3.85
209 210 2.677037 CGCGAGGAAAATACCTGGAGTT 60.677 50.000 0.00 0.00 40.73 3.01
210 211 3.344515 GCGAGGAAAATACCTGGAGTTT 58.655 45.455 0.00 0.00 40.73 2.66
211 212 3.756963 GCGAGGAAAATACCTGGAGTTTT 59.243 43.478 0.00 7.09 40.73 2.43
212 213 4.379499 GCGAGGAAAATACCTGGAGTTTTG 60.379 45.833 14.95 5.72 40.73 2.44
213 214 4.379499 CGAGGAAAATACCTGGAGTTTTGC 60.379 45.833 17.65 17.65 40.73 3.68
214 215 4.740902 AGGAAAATACCTGGAGTTTTGCT 58.259 39.130 20.25 20.25 38.24 3.91
215 216 5.147767 AGGAAAATACCTGGAGTTTTGCTT 58.852 37.500 20.25 11.00 39.44 3.91
216 217 5.602561 AGGAAAATACCTGGAGTTTTGCTTT 59.397 36.000 20.25 8.18 39.44 3.51
217 218 6.099701 AGGAAAATACCTGGAGTTTTGCTTTT 59.900 34.615 20.25 7.70 39.44 2.27
218 219 6.202762 GGAAAATACCTGGAGTTTTGCTTTTG 59.797 38.462 17.89 0.00 32.59 2.44
219 220 5.869649 AATACCTGGAGTTTTGCTTTTGT 57.130 34.783 0.00 0.00 0.00 2.83
220 221 5.869649 ATACCTGGAGTTTTGCTTTTGTT 57.130 34.783 0.00 0.00 0.00 2.83
221 222 4.551702 ACCTGGAGTTTTGCTTTTGTTT 57.448 36.364 0.00 0.00 0.00 2.83
222 223 4.905429 ACCTGGAGTTTTGCTTTTGTTTT 58.095 34.783 0.00 0.00 0.00 2.43
223 224 4.935205 ACCTGGAGTTTTGCTTTTGTTTTC 59.065 37.500 0.00 0.00 0.00 2.29
224 225 4.032786 CCTGGAGTTTTGCTTTTGTTTTCG 59.967 41.667 0.00 0.00 0.00 3.46
225 226 3.369451 TGGAGTTTTGCTTTTGTTTTCGC 59.631 39.130 0.00 0.00 0.00 4.70
226 227 3.616821 GGAGTTTTGCTTTTGTTTTCGCT 59.383 39.130 0.00 0.00 0.00 4.93
227 228 4.492409 GGAGTTTTGCTTTTGTTTTCGCTG 60.492 41.667 0.00 0.00 0.00 5.18
228 229 3.090699 GTTTTGCTTTTGTTTTCGCTGC 58.909 40.909 0.00 0.00 0.00 5.25
229 230 2.001812 TTGCTTTTGTTTTCGCTGCA 57.998 40.000 0.00 0.00 0.00 4.41
230 231 2.001812 TGCTTTTGTTTTCGCTGCAA 57.998 40.000 0.00 0.00 0.00 4.08
231 232 2.341257 TGCTTTTGTTTTCGCTGCAAA 58.659 38.095 0.00 0.00 0.00 3.68
232 233 2.738846 TGCTTTTGTTTTCGCTGCAAAA 59.261 36.364 0.00 3.37 39.03 2.44
234 235 4.582441 CTTTTGTTTTCGCTGCAAAAGT 57.418 36.364 16.28 0.00 46.56 2.66
235 236 5.694674 CTTTTGTTTTCGCTGCAAAAGTA 57.305 34.783 16.28 3.06 46.56 2.24
236 237 6.088719 CTTTTGTTTTCGCTGCAAAAGTAA 57.911 33.333 16.28 7.25 46.56 2.24
237 238 6.654793 TTTTGTTTTCGCTGCAAAAGTAAT 57.345 29.167 0.00 0.00 37.24 1.89
238 239 5.633996 TTGTTTTCGCTGCAAAAGTAATG 57.366 34.783 0.00 0.00 0.00 1.90
239 240 3.489047 TGTTTTCGCTGCAAAAGTAATGC 59.511 39.130 0.00 0.00 44.08 3.56
240 241 1.962412 TTCGCTGCAAAAGTAATGCG 58.038 45.000 6.39 6.39 46.76 4.73
241 242 0.454285 TCGCTGCAAAAGTAATGCGC 60.454 50.000 0.00 0.00 46.76 6.09
242 243 1.983160 GCTGCAAAAGTAATGCGCG 59.017 52.632 0.00 0.00 46.76 6.86
243 244 1.405469 GCTGCAAAAGTAATGCGCGG 61.405 55.000 8.83 0.00 46.76 6.46
244 245 0.167908 CTGCAAAAGTAATGCGCGGA 59.832 50.000 8.83 5.00 46.76 5.54
245 246 0.167908 TGCAAAAGTAATGCGCGGAG 59.832 50.000 8.83 0.00 46.76 4.63
246 247 0.446222 GCAAAAGTAATGCGCGGAGA 59.554 50.000 8.83 0.00 33.57 3.71
247 248 1.529826 GCAAAAGTAATGCGCGGAGAG 60.530 52.381 8.83 0.00 33.57 3.20
248 249 1.062587 CAAAAGTAATGCGCGGAGAGG 59.937 52.381 8.83 0.00 0.00 3.69
249 250 0.462047 AAAGTAATGCGCGGAGAGGG 60.462 55.000 8.83 0.00 0.00 4.30
250 251 1.327690 AAGTAATGCGCGGAGAGGGA 61.328 55.000 8.83 0.00 34.27 4.20
251 252 1.143183 GTAATGCGCGGAGAGGGAA 59.857 57.895 8.83 0.00 34.27 3.97
252 253 0.461339 GTAATGCGCGGAGAGGGAAA 60.461 55.000 8.83 0.00 34.27 3.13
253 254 0.250793 TAATGCGCGGAGAGGGAAAA 59.749 50.000 8.83 0.00 34.27 2.29
254 255 0.394352 AATGCGCGGAGAGGGAAAAT 60.394 50.000 8.83 0.00 34.27 1.82
255 256 1.097547 ATGCGCGGAGAGGGAAAATG 61.098 55.000 8.83 0.00 34.27 2.32
256 257 1.745489 GCGCGGAGAGGGAAAATGT 60.745 57.895 8.83 0.00 34.27 2.71
257 258 1.305930 GCGCGGAGAGGGAAAATGTT 61.306 55.000 8.83 0.00 34.27 2.71
258 259 0.447801 CGCGGAGAGGGAAAATGTTG 59.552 55.000 0.00 0.00 34.27 3.33
259 260 1.534729 GCGGAGAGGGAAAATGTTGT 58.465 50.000 0.00 0.00 0.00 3.32
260 261 2.706890 GCGGAGAGGGAAAATGTTGTA 58.293 47.619 0.00 0.00 0.00 2.41
261 262 2.678336 GCGGAGAGGGAAAATGTTGTAG 59.322 50.000 0.00 0.00 0.00 2.74
262 263 2.678336 CGGAGAGGGAAAATGTTGTAGC 59.322 50.000 0.00 0.00 0.00 3.58
263 264 3.017442 GGAGAGGGAAAATGTTGTAGCC 58.983 50.000 0.00 0.00 0.00 3.93
264 265 2.678336 GAGAGGGAAAATGTTGTAGCCG 59.322 50.000 0.00 0.00 0.00 5.52
265 266 2.039879 AGAGGGAAAATGTTGTAGCCGT 59.960 45.455 0.00 0.00 0.00 5.68
266 267 2.817844 GAGGGAAAATGTTGTAGCCGTT 59.182 45.455 0.00 0.00 0.00 4.44
267 268 2.556622 AGGGAAAATGTTGTAGCCGTTG 59.443 45.455 0.00 0.00 0.00 4.10
268 269 2.352323 GGGAAAATGTTGTAGCCGTTGG 60.352 50.000 0.00 0.00 0.00 3.77
269 270 2.554893 GGAAAATGTTGTAGCCGTTGGA 59.445 45.455 0.00 0.00 0.00 3.53
270 271 3.192633 GGAAAATGTTGTAGCCGTTGGAT 59.807 43.478 0.00 0.00 0.00 3.41
271 272 4.321675 GGAAAATGTTGTAGCCGTTGGATT 60.322 41.667 0.00 0.00 0.00 3.01
272 273 5.106078 GGAAAATGTTGTAGCCGTTGGATTA 60.106 40.000 0.00 0.00 0.00 1.75
273 274 5.968528 AAATGTTGTAGCCGTTGGATTAA 57.031 34.783 0.00 0.00 0.00 1.40
274 275 6.524101 AAATGTTGTAGCCGTTGGATTAAT 57.476 33.333 0.00 0.00 0.00 1.40
275 276 7.633193 AAATGTTGTAGCCGTTGGATTAATA 57.367 32.000 0.00 0.00 0.00 0.98
276 277 7.633193 AATGTTGTAGCCGTTGGATTAATAA 57.367 32.000 0.00 0.00 0.00 1.40
277 278 7.817418 ATGTTGTAGCCGTTGGATTAATAAT 57.183 32.000 0.00 0.00 0.00 1.28
278 279 8.911918 ATGTTGTAGCCGTTGGATTAATAATA 57.088 30.769 0.00 0.00 0.00 0.98
279 280 8.373048 TGTTGTAGCCGTTGGATTAATAATAG 57.627 34.615 0.00 0.00 0.00 1.73
280 281 8.205512 TGTTGTAGCCGTTGGATTAATAATAGA 58.794 33.333 0.00 0.00 0.00 1.98
281 282 9.216117 GTTGTAGCCGTTGGATTAATAATAGAT 57.784 33.333 0.00 0.00 0.00 1.98
282 283 8.771920 TGTAGCCGTTGGATTAATAATAGATG 57.228 34.615 0.00 0.00 0.00 2.90
283 284 8.590204 TGTAGCCGTTGGATTAATAATAGATGA 58.410 33.333 0.00 0.00 0.00 2.92
284 285 9.431887 GTAGCCGTTGGATTAATAATAGATGAA 57.568 33.333 0.00 0.00 0.00 2.57
285 286 8.553459 AGCCGTTGGATTAATAATAGATGAAG 57.447 34.615 0.00 0.00 0.00 3.02
286 287 8.375506 AGCCGTTGGATTAATAATAGATGAAGA 58.624 33.333 0.00 0.00 0.00 2.87
287 288 8.660373 GCCGTTGGATTAATAATAGATGAAGAG 58.340 37.037 0.00 0.00 0.00 2.85
288 289 9.155975 CCGTTGGATTAATAATAGATGAAGAGG 57.844 37.037 0.00 0.00 0.00 3.69
289 290 9.155975 CGTTGGATTAATAATAGATGAAGAGGG 57.844 37.037 0.00 0.00 0.00 4.30
292 293 8.543774 TGGATTAATAATAGATGAAGAGGGAGC 58.456 37.037 0.00 0.00 0.00 4.70
293 294 8.543774 GGATTAATAATAGATGAAGAGGGAGCA 58.456 37.037 0.00 0.00 0.00 4.26
294 295 9.377312 GATTAATAATAGATGAAGAGGGAGCAC 57.623 37.037 0.00 0.00 0.00 4.40
295 296 3.742433 AATAGATGAAGAGGGAGCACG 57.258 47.619 0.00 0.00 0.00 5.34
296 297 1.403814 TAGATGAAGAGGGAGCACGG 58.596 55.000 0.00 0.00 0.00 4.94
297 298 0.324738 AGATGAAGAGGGAGCACGGA 60.325 55.000 0.00 0.00 0.00 4.69
298 299 0.755686 GATGAAGAGGGAGCACGGAT 59.244 55.000 0.00 0.00 0.00 4.18
299 300 0.467384 ATGAAGAGGGAGCACGGATG 59.533 55.000 0.00 0.00 0.00 3.51
300 301 1.144936 GAAGAGGGAGCACGGATGG 59.855 63.158 0.00 0.00 0.00 3.51
301 302 2.317149 GAAGAGGGAGCACGGATGGG 62.317 65.000 0.00 0.00 0.00 4.00
302 303 2.764128 GAGGGAGCACGGATGGGA 60.764 66.667 0.00 0.00 0.00 4.37
303 304 2.765807 AGGGAGCACGGATGGGAG 60.766 66.667 0.00 0.00 0.00 4.30
304 305 3.083997 GGGAGCACGGATGGGAGT 61.084 66.667 0.00 0.00 0.00 3.85
305 306 1.760875 GGGAGCACGGATGGGAGTA 60.761 63.158 0.00 0.00 0.00 2.59
306 307 1.442148 GGAGCACGGATGGGAGTAC 59.558 63.158 0.00 0.00 0.00 2.73
307 308 1.442148 GAGCACGGATGGGAGTACC 59.558 63.158 0.00 0.00 40.81 3.34
314 315 0.396811 GGATGGGAGTACCGAATGGG 59.603 60.000 0.00 0.00 44.64 4.00
315 316 1.420430 GATGGGAGTACCGAATGGGA 58.580 55.000 0.00 0.00 44.64 4.37
316 317 1.344763 GATGGGAGTACCGAATGGGAG 59.655 57.143 0.00 0.00 44.64 4.30
317 318 0.042131 TGGGAGTACCGAATGGGAGT 59.958 55.000 0.00 0.00 44.64 3.85
318 319 1.288633 TGGGAGTACCGAATGGGAGTA 59.711 52.381 0.00 0.00 44.64 2.59
319 320 1.685517 GGGAGTACCGAATGGGAGTAC 59.314 57.143 0.00 0.00 40.75 2.73
320 321 1.685517 GGAGTACCGAATGGGAGTACC 59.314 57.143 0.00 0.00 40.75 3.34
321 322 1.336125 GAGTACCGAATGGGAGTACCG 59.664 57.143 0.00 0.00 44.64 4.02
322 323 1.106285 GTACCGAATGGGAGTACCGT 58.894 55.000 0.00 0.00 44.64 4.83
323 324 1.066152 GTACCGAATGGGAGTACCGTC 59.934 57.143 0.00 0.00 44.64 4.79
324 325 1.065273 CCGAATGGGAGTACCGTCG 59.935 63.158 9.81 9.81 44.58 5.12
325 326 1.065273 CGAATGGGAGTACCGTCGG 59.935 63.158 10.48 10.48 42.53 4.79
326 327 1.660560 CGAATGGGAGTACCGTCGGT 61.661 60.000 22.66 22.66 42.53 4.69
327 328 0.533951 GAATGGGAGTACCGTCGGTT 59.466 55.000 24.36 5.00 44.64 4.44
328 329 0.248289 AATGGGAGTACCGTCGGTTG 59.752 55.000 24.36 0.00 44.64 3.77
329 330 0.612732 ATGGGAGTACCGTCGGTTGA 60.613 55.000 24.36 1.63 44.64 3.18
330 331 0.612732 TGGGAGTACCGTCGGTTGAT 60.613 55.000 24.36 8.89 44.64 2.57
331 332 0.179119 GGGAGTACCGTCGGTTGATG 60.179 60.000 24.36 0.00 37.09 3.07
332 333 0.813184 GGAGTACCGTCGGTTGATGA 59.187 55.000 24.36 0.00 37.09 2.92
333 334 1.407979 GGAGTACCGTCGGTTGATGAT 59.592 52.381 24.36 2.30 37.09 2.45
334 335 2.620115 GGAGTACCGTCGGTTGATGATA 59.380 50.000 24.36 0.00 37.09 2.15
335 336 3.067180 GGAGTACCGTCGGTTGATGATAA 59.933 47.826 24.36 0.00 37.09 1.75
336 337 4.261909 GGAGTACCGTCGGTTGATGATAAT 60.262 45.833 24.36 0.68 37.09 1.28
337 338 5.272283 AGTACCGTCGGTTGATGATAATT 57.728 39.130 24.36 0.00 37.09 1.40
338 339 6.395426 AGTACCGTCGGTTGATGATAATTA 57.605 37.500 24.36 0.00 37.09 1.40
339 340 6.989659 AGTACCGTCGGTTGATGATAATTAT 58.010 36.000 24.36 0.00 37.09 1.28
340 341 7.439381 AGTACCGTCGGTTGATGATAATTATT 58.561 34.615 24.36 0.00 37.09 1.40
341 342 7.929785 AGTACCGTCGGTTGATGATAATTATTT 59.070 33.333 24.36 0.00 37.09 1.40
342 343 7.562454 ACCGTCGGTTGATGATAATTATTTT 57.438 32.000 12.23 0.00 32.56 1.82
343 344 7.636326 ACCGTCGGTTGATGATAATTATTTTC 58.364 34.615 12.23 1.15 32.56 2.29
344 345 7.497909 ACCGTCGGTTGATGATAATTATTTTCT 59.502 33.333 12.23 0.00 32.56 2.52
345 346 8.342634 CCGTCGGTTGATGATAATTATTTTCTT 58.657 33.333 2.08 0.00 32.56 2.52
414 418 3.179443 TCAAGTTGTATCCATCGAGGC 57.821 47.619 2.11 0.00 37.29 4.70
476 480 4.870991 TGTCGTTCGGAATATGCATTGTAA 59.129 37.500 3.54 0.00 0.00 2.41
585 834 1.408969 TTCCCCAGAACAGCCAAAAC 58.591 50.000 0.00 0.00 0.00 2.43
628 877 1.200020 CTCAATCCAGTCAAAACGGGC 59.800 52.381 0.00 0.00 40.25 6.13
690 940 2.124507 CTCCCCCTCGCCAAGTTTCA 62.125 60.000 0.00 0.00 0.00 2.69
733 994 1.527380 GGCAACGTGGGAAACTCCA 60.527 57.895 0.00 0.00 38.64 3.86
815 1106 4.451460 CCTCCTCCTCCACCCTATAAATCT 60.451 50.000 0.00 0.00 0.00 2.40
846 1899 4.221422 GCGGCAGCCTCGTCCATA 62.221 66.667 10.54 0.00 37.42 2.74
847 1900 2.737180 CGGCAGCCTCGTCCATAT 59.263 61.111 10.54 0.00 0.00 1.78
849 1902 1.004440 GGCAGCCTCGTCCATATCC 60.004 63.158 3.29 0.00 0.00 2.59
851 1904 0.106708 GCAGCCTCGTCCATATCCAA 59.893 55.000 0.00 0.00 0.00 3.53
852 1905 1.875576 GCAGCCTCGTCCATATCCAAG 60.876 57.143 0.00 0.00 0.00 3.61
861 1914 2.943033 GTCCATATCCAAGTTCCAACCG 59.057 50.000 0.00 0.00 0.00 4.44
1009 2117 1.076850 CATACAGCCATGGCCACCA 60.077 57.895 33.14 16.28 43.17 4.17
1014 2122 4.828296 GCCATGGCCACCAGAGGG 62.828 72.222 27.24 4.14 36.75 4.30
1400 2571 4.217159 CCGCTACCGCCACTACCC 62.217 72.222 0.00 0.00 0.00 3.69
1830 3071 4.861210 TCTCTTCTTCTCGTGAAACTCAC 58.139 43.478 1.12 0.00 43.65 3.51
2044 3285 8.145122 ACTCTTTCGAAAGTTTAGATTCTGTCT 58.855 33.333 31.29 6.35 37.82 3.41
2247 3488 4.722526 TCTTCCTCTCATCTCCCTCTAG 57.277 50.000 0.00 0.00 0.00 2.43
2339 3580 1.362406 GCAAGACCAGCTAGGAACGC 61.362 60.000 8.91 3.19 41.22 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.874977 GAGCCGCCGGTCTGTAGC 62.875 72.222 4.45 0.00 33.54 3.58
6 7 4.554363 CGAGCCGCCGGTCTGTAG 62.554 72.222 4.45 0.00 34.19 2.74
19 20 1.811679 GAACTAGGCTGCCACGAGC 60.812 63.158 22.65 3.20 44.14 5.03
20 21 0.737715 GTGAACTAGGCTGCCACGAG 60.738 60.000 22.65 16.56 0.00 4.18
21 22 1.292223 GTGAACTAGGCTGCCACGA 59.708 57.895 22.65 4.54 0.00 4.35
22 23 1.005037 TGTGAACTAGGCTGCCACG 60.005 57.895 22.65 13.38 0.00 4.94
23 24 0.035458 ACTGTGAACTAGGCTGCCAC 59.965 55.000 22.65 9.57 0.00 5.01
24 25 0.321671 GACTGTGAACTAGGCTGCCA 59.678 55.000 22.65 6.04 0.00 4.92
25 26 0.737715 CGACTGTGAACTAGGCTGCC 60.738 60.000 11.65 11.65 0.00 4.85
26 27 0.038159 ACGACTGTGAACTAGGCTGC 60.038 55.000 0.00 0.00 0.00 5.25
27 28 2.488545 ACTACGACTGTGAACTAGGCTG 59.511 50.000 0.00 0.00 0.00 4.85
28 29 2.488545 CACTACGACTGTGAACTAGGCT 59.511 50.000 0.00 0.00 37.60 4.58
29 30 2.228343 ACACTACGACTGTGAACTAGGC 59.772 50.000 12.35 0.00 38.65 3.93
30 31 3.752222 AGACACTACGACTGTGAACTAGG 59.248 47.826 12.35 0.00 38.65 3.02
31 32 4.213694 ACAGACACTACGACTGTGAACTAG 59.786 45.833 12.35 0.00 46.72 2.57
32 33 4.132336 ACAGACACTACGACTGTGAACTA 58.868 43.478 12.35 0.00 46.72 2.24
33 34 2.950309 ACAGACACTACGACTGTGAACT 59.050 45.455 12.35 8.83 46.72 3.01
34 35 3.351020 ACAGACACTACGACTGTGAAC 57.649 47.619 12.35 7.28 46.72 3.18
39 40 2.868662 CATGGACAGACACTACGACTG 58.131 52.381 0.00 0.00 42.30 3.51
40 41 1.202582 GCATGGACAGACACTACGACT 59.797 52.381 0.00 0.00 0.00 4.18
41 42 1.202582 AGCATGGACAGACACTACGAC 59.797 52.381 0.00 0.00 0.00 4.34
42 43 1.545841 AGCATGGACAGACACTACGA 58.454 50.000 0.00 0.00 0.00 3.43
43 44 2.094494 AGAAGCATGGACAGACACTACG 60.094 50.000 0.00 0.00 0.00 3.51
44 45 3.601443 AGAAGCATGGACAGACACTAC 57.399 47.619 0.00 0.00 0.00 2.73
45 46 3.578282 TGAAGAAGCATGGACAGACACTA 59.422 43.478 0.00 0.00 0.00 2.74
46 47 2.369860 TGAAGAAGCATGGACAGACACT 59.630 45.455 0.00 0.00 0.00 3.55
47 48 2.481952 GTGAAGAAGCATGGACAGACAC 59.518 50.000 0.00 0.00 0.00 3.67
48 49 2.369860 AGTGAAGAAGCATGGACAGACA 59.630 45.455 0.00 0.00 0.00 3.41
49 50 2.999355 GAGTGAAGAAGCATGGACAGAC 59.001 50.000 0.00 0.00 0.00 3.51
50 51 2.634453 TGAGTGAAGAAGCATGGACAGA 59.366 45.455 0.00 0.00 0.00 3.41
51 52 3.001414 CTGAGTGAAGAAGCATGGACAG 58.999 50.000 0.00 0.00 0.00 3.51
52 53 2.289882 CCTGAGTGAAGAAGCATGGACA 60.290 50.000 0.00 0.00 0.00 4.02
53 54 2.354259 CCTGAGTGAAGAAGCATGGAC 58.646 52.381 0.00 0.00 0.00 4.02
54 55 1.280133 CCCTGAGTGAAGAAGCATGGA 59.720 52.381 0.00 0.00 0.00 3.41
55 56 1.280133 TCCCTGAGTGAAGAAGCATGG 59.720 52.381 0.00 0.00 0.00 3.66
56 57 2.775911 TCCCTGAGTGAAGAAGCATG 57.224 50.000 0.00 0.00 0.00 4.06
57 58 3.265221 TGATTCCCTGAGTGAAGAAGCAT 59.735 43.478 0.00 0.00 30.32 3.79
58 59 2.639347 TGATTCCCTGAGTGAAGAAGCA 59.361 45.455 0.00 0.00 32.66 3.91
59 60 3.055530 TCTGATTCCCTGAGTGAAGAAGC 60.056 47.826 0.00 0.00 0.00 3.86
60 61 4.815533 TCTGATTCCCTGAGTGAAGAAG 57.184 45.455 0.00 0.00 0.00 2.85
61 62 4.019860 CCTTCTGATTCCCTGAGTGAAGAA 60.020 45.833 0.00 0.00 33.45 2.52
62 63 3.517100 CCTTCTGATTCCCTGAGTGAAGA 59.483 47.826 0.00 0.00 33.45 2.87
63 64 3.370315 CCCTTCTGATTCCCTGAGTGAAG 60.370 52.174 0.00 0.00 0.00 3.02
64 65 2.573462 CCCTTCTGATTCCCTGAGTGAA 59.427 50.000 0.00 0.00 0.00 3.18
65 66 2.191400 CCCTTCTGATTCCCTGAGTGA 58.809 52.381 0.00 0.00 0.00 3.41
66 67 2.170187 CTCCCTTCTGATTCCCTGAGTG 59.830 54.545 0.00 0.00 0.00 3.51
67 68 2.476199 CTCCCTTCTGATTCCCTGAGT 58.524 52.381 0.00 0.00 0.00 3.41
68 69 1.140652 GCTCCCTTCTGATTCCCTGAG 59.859 57.143 0.00 0.00 0.00 3.35
69 70 1.207791 GCTCCCTTCTGATTCCCTGA 58.792 55.000 0.00 0.00 0.00 3.86
70 71 0.179062 CGCTCCCTTCTGATTCCCTG 60.179 60.000 0.00 0.00 0.00 4.45
71 72 1.341156 CCGCTCCCTTCTGATTCCCT 61.341 60.000 0.00 0.00 0.00 4.20
72 73 1.147153 CCGCTCCCTTCTGATTCCC 59.853 63.158 0.00 0.00 0.00 3.97
73 74 1.524849 GCCGCTCCCTTCTGATTCC 60.525 63.158 0.00 0.00 0.00 3.01
74 75 1.884926 CGCCGCTCCCTTCTGATTC 60.885 63.158 0.00 0.00 0.00 2.52
75 76 2.187946 CGCCGCTCCCTTCTGATT 59.812 61.111 0.00 0.00 0.00 2.57
76 77 2.759973 TCGCCGCTCCCTTCTGAT 60.760 61.111 0.00 0.00 0.00 2.90
77 78 3.760035 GTCGCCGCTCCCTTCTGA 61.760 66.667 0.00 0.00 0.00 3.27
85 86 4.849329 CTGTACCCGTCGCCGCTC 62.849 72.222 0.00 0.00 0.00 5.03
87 88 3.711541 AATCTGTACCCGTCGCCGC 62.712 63.158 0.00 0.00 0.00 6.53
88 89 1.876714 CAATCTGTACCCGTCGCCG 60.877 63.158 0.00 0.00 0.00 6.46
89 90 0.527817 CTCAATCTGTACCCGTCGCC 60.528 60.000 0.00 0.00 0.00 5.54
90 91 0.527817 CCTCAATCTGTACCCGTCGC 60.528 60.000 0.00 0.00 0.00 5.19
91 92 0.815734 ACCTCAATCTGTACCCGTCG 59.184 55.000 0.00 0.00 0.00 5.12
92 93 1.134788 CCACCTCAATCTGTACCCGTC 60.135 57.143 0.00 0.00 0.00 4.79
93 94 0.902531 CCACCTCAATCTGTACCCGT 59.097 55.000 0.00 0.00 0.00 5.28
94 95 0.902531 ACCACCTCAATCTGTACCCG 59.097 55.000 0.00 0.00 0.00 5.28
95 96 3.262405 TGTAACCACCTCAATCTGTACCC 59.738 47.826 0.00 0.00 0.00 3.69
96 97 4.546829 TGTAACCACCTCAATCTGTACC 57.453 45.455 0.00 0.00 0.00 3.34
97 98 5.638234 GTCTTGTAACCACCTCAATCTGTAC 59.362 44.000 0.00 0.00 0.00 2.90
98 99 5.542635 AGTCTTGTAACCACCTCAATCTGTA 59.457 40.000 0.00 0.00 0.00 2.74
99 100 4.348168 AGTCTTGTAACCACCTCAATCTGT 59.652 41.667 0.00 0.00 0.00 3.41
100 101 4.899502 AGTCTTGTAACCACCTCAATCTG 58.100 43.478 0.00 0.00 0.00 2.90
101 102 5.337652 GCTAGTCTTGTAACCACCTCAATCT 60.338 44.000 0.00 0.00 0.00 2.40
102 103 4.870991 GCTAGTCTTGTAACCACCTCAATC 59.129 45.833 0.00 0.00 0.00 2.67
103 104 4.532521 AGCTAGTCTTGTAACCACCTCAAT 59.467 41.667 0.00 0.00 0.00 2.57
104 105 3.901844 AGCTAGTCTTGTAACCACCTCAA 59.098 43.478 0.00 0.00 0.00 3.02
105 106 3.507411 AGCTAGTCTTGTAACCACCTCA 58.493 45.455 0.00 0.00 0.00 3.86
106 107 3.510360 TGAGCTAGTCTTGTAACCACCTC 59.490 47.826 0.00 0.00 0.00 3.85
107 108 3.258622 GTGAGCTAGTCTTGTAACCACCT 59.741 47.826 0.00 0.00 0.00 4.00
108 109 3.586892 GTGAGCTAGTCTTGTAACCACC 58.413 50.000 0.00 0.00 0.00 4.61
109 110 3.243336 CGTGAGCTAGTCTTGTAACCAC 58.757 50.000 0.00 0.00 0.00 4.16
110 111 2.230508 CCGTGAGCTAGTCTTGTAACCA 59.769 50.000 0.00 0.00 0.00 3.67
111 112 2.877335 CCGTGAGCTAGTCTTGTAACC 58.123 52.381 0.00 0.00 0.00 2.85
112 113 2.260481 GCCGTGAGCTAGTCTTGTAAC 58.740 52.381 0.00 0.00 38.99 2.50
113 114 1.203994 GGCCGTGAGCTAGTCTTGTAA 59.796 52.381 0.00 0.00 43.05 2.41
114 115 0.815734 GGCCGTGAGCTAGTCTTGTA 59.184 55.000 0.00 0.00 43.05 2.41
115 116 1.592223 GGCCGTGAGCTAGTCTTGT 59.408 57.895 0.00 0.00 43.05 3.16
116 117 1.517257 CGGCCGTGAGCTAGTCTTG 60.517 63.158 19.50 0.00 43.05 3.02
117 118 1.533469 AACGGCCGTGAGCTAGTCTT 61.533 55.000 34.95 9.11 43.05 3.01
118 119 1.935327 GAACGGCCGTGAGCTAGTCT 61.935 60.000 34.95 13.20 43.05 3.24
119 120 1.516603 GAACGGCCGTGAGCTAGTC 60.517 63.158 34.95 20.16 43.05 2.59
120 121 2.572284 GAACGGCCGTGAGCTAGT 59.428 61.111 34.95 15.03 43.05 2.57
121 122 2.202756 GGAACGGCCGTGAGCTAG 60.203 66.667 34.95 0.00 43.05 3.42
122 123 2.355986 ATGGAACGGCCGTGAGCTA 61.356 57.895 34.95 22.08 43.05 3.32
123 124 3.706373 ATGGAACGGCCGTGAGCT 61.706 61.111 34.95 17.34 43.05 4.09
128 129 3.055719 CAAGCATGGAACGGCCGT 61.056 61.111 28.70 28.70 40.66 5.68
129 130 2.745884 TCAAGCATGGAACGGCCG 60.746 61.111 26.86 26.86 40.66 6.13
130 131 1.648467 GAGTCAAGCATGGAACGGCC 61.648 60.000 0.00 0.00 37.10 6.13
131 132 1.648467 GGAGTCAAGCATGGAACGGC 61.648 60.000 0.00 0.00 0.00 5.68
132 133 1.361668 CGGAGTCAAGCATGGAACGG 61.362 60.000 0.00 0.00 0.00 4.44
133 134 1.361668 CCGGAGTCAAGCATGGAACG 61.362 60.000 0.00 0.00 0.00 3.95
134 135 1.026718 CCCGGAGTCAAGCATGGAAC 61.027 60.000 0.73 0.00 0.00 3.62
135 136 1.299648 CCCGGAGTCAAGCATGGAA 59.700 57.895 0.73 0.00 0.00 3.53
136 137 1.899437 GACCCGGAGTCAAGCATGGA 61.899 60.000 0.73 0.00 45.55 3.41
137 138 1.450312 GACCCGGAGTCAAGCATGG 60.450 63.158 0.73 0.00 45.55 3.66
138 139 4.208632 GACCCGGAGTCAAGCATG 57.791 61.111 0.73 0.00 45.55 4.06
145 146 2.722201 ATCTTGCGGACCCGGAGTC 61.722 63.158 0.73 8.96 45.51 3.36
146 147 2.683933 ATCTTGCGGACCCGGAGT 60.684 61.111 0.73 0.00 41.44 3.85
147 148 2.202932 CATCTTGCGGACCCGGAG 60.203 66.667 0.73 0.00 41.44 4.63
148 149 3.781307 CCATCTTGCGGACCCGGA 61.781 66.667 0.73 4.32 40.19 5.14
149 150 4.856801 CCCATCTTGCGGACCCGG 62.857 72.222 10.70 0.00 40.19 5.73
150 151 1.754380 TATCCCATCTTGCGGACCCG 61.754 60.000 3.73 3.73 43.09 5.28
151 152 0.035458 CTATCCCATCTTGCGGACCC 59.965 60.000 0.00 0.00 0.00 4.46
152 153 0.035458 CCTATCCCATCTTGCGGACC 59.965 60.000 0.00 0.00 0.00 4.46
153 154 0.035458 CCCTATCCCATCTTGCGGAC 59.965 60.000 0.00 0.00 0.00 4.79
154 155 1.127567 CCCCTATCCCATCTTGCGGA 61.128 60.000 0.00 0.00 0.00 5.54
155 156 1.127567 TCCCCTATCCCATCTTGCGG 61.128 60.000 0.00 0.00 0.00 5.69
156 157 0.764890 TTCCCCTATCCCATCTTGCG 59.235 55.000 0.00 0.00 0.00 4.85
157 158 2.057922 TCTTCCCCTATCCCATCTTGC 58.942 52.381 0.00 0.00 0.00 4.01
158 159 3.976654 TCTTCTTCCCCTATCCCATCTTG 59.023 47.826 0.00 0.00 0.00 3.02
159 160 4.302004 TCTTCTTCCCCTATCCCATCTT 57.698 45.455 0.00 0.00 0.00 2.40
160 161 4.302004 TTCTTCTTCCCCTATCCCATCT 57.698 45.455 0.00 0.00 0.00 2.90
161 162 5.337652 CGTATTCTTCTTCCCCTATCCCATC 60.338 48.000 0.00 0.00 0.00 3.51
162 163 4.532521 CGTATTCTTCTTCCCCTATCCCAT 59.467 45.833 0.00 0.00 0.00 4.00
163 164 3.901844 CGTATTCTTCTTCCCCTATCCCA 59.098 47.826 0.00 0.00 0.00 4.37
164 165 3.902467 ACGTATTCTTCTTCCCCTATCCC 59.098 47.826 0.00 0.00 0.00 3.85
165 166 5.335504 CGTACGTATTCTTCTTCCCCTATCC 60.336 48.000 7.22 0.00 0.00 2.59
166 167 5.697826 CGTACGTATTCTTCTTCCCCTATC 58.302 45.833 7.22 0.00 0.00 2.08
167 168 4.022503 GCGTACGTATTCTTCTTCCCCTAT 60.023 45.833 17.90 0.00 0.00 2.57
168 169 3.316308 GCGTACGTATTCTTCTTCCCCTA 59.684 47.826 17.90 0.00 0.00 3.53
169 170 2.100418 GCGTACGTATTCTTCTTCCCCT 59.900 50.000 17.90 0.00 0.00 4.79
170 171 2.467838 GCGTACGTATTCTTCTTCCCC 58.532 52.381 17.90 0.00 0.00 4.81
171 172 2.114825 CGCGTACGTATTCTTCTTCCC 58.885 52.381 17.90 0.00 33.53 3.97
172 173 3.034562 CTCGCGTACGTATTCTTCTTCC 58.965 50.000 17.90 0.00 41.18 3.46
173 174 3.034562 CCTCGCGTACGTATTCTTCTTC 58.965 50.000 17.90 0.00 41.18 2.87
174 175 2.679837 TCCTCGCGTACGTATTCTTCTT 59.320 45.455 17.90 0.00 41.18 2.52
175 176 2.283298 TCCTCGCGTACGTATTCTTCT 58.717 47.619 17.90 0.00 41.18 2.85
176 177 2.744787 TCCTCGCGTACGTATTCTTC 57.255 50.000 17.90 0.00 41.18 2.87
177 178 3.492421 TTTCCTCGCGTACGTATTCTT 57.508 42.857 17.90 0.00 41.18 2.52
178 179 3.492421 TTTTCCTCGCGTACGTATTCT 57.508 42.857 17.90 0.00 41.18 2.40
179 180 4.147133 GGTATTTTCCTCGCGTACGTATTC 59.853 45.833 17.90 0.00 41.18 1.75
180 181 4.044426 GGTATTTTCCTCGCGTACGTATT 58.956 43.478 17.90 0.00 41.18 1.89
181 182 3.316308 AGGTATTTTCCTCGCGTACGTAT 59.684 43.478 17.90 0.00 41.18 3.06
182 183 2.682856 AGGTATTTTCCTCGCGTACGTA 59.317 45.455 17.90 4.68 41.18 3.57
183 184 1.474077 AGGTATTTTCCTCGCGTACGT 59.526 47.619 17.90 0.00 41.18 3.57
184 185 1.850441 CAGGTATTTTCCTCGCGTACG 59.150 52.381 11.84 11.84 42.01 3.67
185 186 2.159198 TCCAGGTATTTTCCTCGCGTAC 60.159 50.000 5.77 0.00 35.37 3.67
186 187 2.100252 CTCCAGGTATTTTCCTCGCGTA 59.900 50.000 5.77 0.00 35.37 4.42
187 188 0.899720 TCCAGGTATTTTCCTCGCGT 59.100 50.000 5.77 0.00 35.37 6.01
188 189 1.134788 ACTCCAGGTATTTTCCTCGCG 60.135 52.381 0.00 0.00 35.37 5.87
189 190 2.693267 ACTCCAGGTATTTTCCTCGC 57.307 50.000 0.00 0.00 35.37 5.03
190 191 4.379499 GCAAAACTCCAGGTATTTTCCTCG 60.379 45.833 1.64 0.00 35.37 4.63
191 192 4.767409 AGCAAAACTCCAGGTATTTTCCTC 59.233 41.667 1.64 0.00 35.37 3.71
192 193 4.740902 AGCAAAACTCCAGGTATTTTCCT 58.259 39.130 1.64 0.00 38.51 3.36
193 194 5.468540 AAGCAAAACTCCAGGTATTTTCC 57.531 39.130 1.64 0.00 0.00 3.13
194 195 6.761242 ACAAAAGCAAAACTCCAGGTATTTTC 59.239 34.615 1.64 0.00 0.00 2.29
195 196 6.649155 ACAAAAGCAAAACTCCAGGTATTTT 58.351 32.000 0.00 0.00 0.00 1.82
196 197 6.233905 ACAAAAGCAAAACTCCAGGTATTT 57.766 33.333 0.00 0.00 0.00 1.40
197 198 5.869649 ACAAAAGCAAAACTCCAGGTATT 57.130 34.783 0.00 0.00 0.00 1.89
198 199 5.869649 AACAAAAGCAAAACTCCAGGTAT 57.130 34.783 0.00 0.00 0.00 2.73
199 200 5.669164 AAACAAAAGCAAAACTCCAGGTA 57.331 34.783 0.00 0.00 0.00 3.08
200 201 4.551702 AAACAAAAGCAAAACTCCAGGT 57.448 36.364 0.00 0.00 0.00 4.00
201 202 4.032786 CGAAAACAAAAGCAAAACTCCAGG 59.967 41.667 0.00 0.00 0.00 4.45
202 203 4.492409 GCGAAAACAAAAGCAAAACTCCAG 60.492 41.667 0.00 0.00 0.00 3.86
203 204 3.369451 GCGAAAACAAAAGCAAAACTCCA 59.631 39.130 0.00 0.00 0.00 3.86
204 205 3.616821 AGCGAAAACAAAAGCAAAACTCC 59.383 39.130 0.00 0.00 0.00 3.85
205 206 4.568077 CAGCGAAAACAAAAGCAAAACTC 58.432 39.130 0.00 0.00 0.00 3.01
206 207 3.181521 GCAGCGAAAACAAAAGCAAAACT 60.182 39.130 0.00 0.00 0.00 2.66
207 208 3.090699 GCAGCGAAAACAAAAGCAAAAC 58.909 40.909 0.00 0.00 0.00 2.43
208 209 2.738846 TGCAGCGAAAACAAAAGCAAAA 59.261 36.364 0.00 0.00 0.00 2.44
209 210 2.341257 TGCAGCGAAAACAAAAGCAAA 58.659 38.095 0.00 0.00 0.00 3.68
210 211 2.001812 TGCAGCGAAAACAAAAGCAA 57.998 40.000 0.00 0.00 0.00 3.91
211 212 2.001812 TTGCAGCGAAAACAAAAGCA 57.998 40.000 0.00 0.00 0.00 3.91
212 213 3.382015 TTTTGCAGCGAAAACAAAAGC 57.618 38.095 5.23 0.00 38.11 3.51
214 215 6.473521 CATTACTTTTGCAGCGAAAACAAAA 58.526 32.000 9.20 0.00 40.07 2.44
215 216 5.501574 GCATTACTTTTGCAGCGAAAACAAA 60.502 36.000 9.20 4.51 39.90 2.83
216 217 4.026145 GCATTACTTTTGCAGCGAAAACAA 60.026 37.500 9.20 6.42 39.90 2.83
217 218 3.489047 GCATTACTTTTGCAGCGAAAACA 59.511 39.130 9.20 0.00 39.90 2.83
218 219 4.039982 GCATTACTTTTGCAGCGAAAAC 57.960 40.909 9.20 0.00 39.90 2.43
223 224 1.723115 CGCGCATTACTTTTGCAGCG 61.723 55.000 8.75 15.78 46.99 5.18
224 225 1.405469 CCGCGCATTACTTTTGCAGC 61.405 55.000 8.75 0.00 40.14 5.25
225 226 0.167908 TCCGCGCATTACTTTTGCAG 59.832 50.000 8.75 0.00 40.14 4.41
226 227 0.167908 CTCCGCGCATTACTTTTGCA 59.832 50.000 8.75 0.00 40.14 4.08
227 228 0.446222 TCTCCGCGCATTACTTTTGC 59.554 50.000 8.75 0.00 36.74 3.68
228 229 1.062587 CCTCTCCGCGCATTACTTTTG 59.937 52.381 8.75 0.00 0.00 2.44
229 230 1.369625 CCTCTCCGCGCATTACTTTT 58.630 50.000 8.75 0.00 0.00 2.27
230 231 0.462047 CCCTCTCCGCGCATTACTTT 60.462 55.000 8.75 0.00 0.00 2.66
231 232 1.144057 CCCTCTCCGCGCATTACTT 59.856 57.895 8.75 0.00 0.00 2.24
232 233 1.327690 TTCCCTCTCCGCGCATTACT 61.328 55.000 8.75 0.00 0.00 2.24
233 234 0.461339 TTTCCCTCTCCGCGCATTAC 60.461 55.000 8.75 0.00 0.00 1.89
234 235 0.250793 TTTTCCCTCTCCGCGCATTA 59.749 50.000 8.75 0.00 0.00 1.90
235 236 0.394352 ATTTTCCCTCTCCGCGCATT 60.394 50.000 8.75 0.00 0.00 3.56
236 237 1.097547 CATTTTCCCTCTCCGCGCAT 61.098 55.000 8.75 0.00 0.00 4.73
237 238 1.745115 CATTTTCCCTCTCCGCGCA 60.745 57.895 8.75 0.00 0.00 6.09
238 239 1.305930 AACATTTTCCCTCTCCGCGC 61.306 55.000 0.00 0.00 0.00 6.86
239 240 0.447801 CAACATTTTCCCTCTCCGCG 59.552 55.000 0.00 0.00 0.00 6.46
240 241 1.534729 ACAACATTTTCCCTCTCCGC 58.465 50.000 0.00 0.00 0.00 5.54
241 242 2.678336 GCTACAACATTTTCCCTCTCCG 59.322 50.000 0.00 0.00 0.00 4.63
242 243 3.017442 GGCTACAACATTTTCCCTCTCC 58.983 50.000 0.00 0.00 0.00 3.71
243 244 2.678336 CGGCTACAACATTTTCCCTCTC 59.322 50.000 0.00 0.00 0.00 3.20
244 245 2.039879 ACGGCTACAACATTTTCCCTCT 59.960 45.455 0.00 0.00 0.00 3.69
245 246 2.433436 ACGGCTACAACATTTTCCCTC 58.567 47.619 0.00 0.00 0.00 4.30
246 247 2.556622 CAACGGCTACAACATTTTCCCT 59.443 45.455 0.00 0.00 0.00 4.20
247 248 2.352323 CCAACGGCTACAACATTTTCCC 60.352 50.000 0.00 0.00 0.00 3.97
248 249 2.554893 TCCAACGGCTACAACATTTTCC 59.445 45.455 0.00 0.00 0.00 3.13
249 250 3.907894 TCCAACGGCTACAACATTTTC 57.092 42.857 0.00 0.00 0.00 2.29
250 251 4.864704 AATCCAACGGCTACAACATTTT 57.135 36.364 0.00 0.00 0.00 1.82
251 252 5.968528 TTAATCCAACGGCTACAACATTT 57.031 34.783 0.00 0.00 0.00 2.32
252 253 7.633193 TTATTAATCCAACGGCTACAACATT 57.367 32.000 0.00 0.00 0.00 2.71
253 254 7.817418 ATTATTAATCCAACGGCTACAACAT 57.183 32.000 0.00 0.00 0.00 2.71
254 255 8.205512 TCTATTATTAATCCAACGGCTACAACA 58.794 33.333 0.00 0.00 0.00 3.33
255 256 8.597662 TCTATTATTAATCCAACGGCTACAAC 57.402 34.615 0.00 0.00 0.00 3.32
256 257 9.214957 CATCTATTATTAATCCAACGGCTACAA 57.785 33.333 0.00 0.00 0.00 2.41
257 258 8.590204 TCATCTATTATTAATCCAACGGCTACA 58.410 33.333 0.00 0.00 0.00 2.74
258 259 8.997621 TCATCTATTATTAATCCAACGGCTAC 57.002 34.615 0.00 0.00 0.00 3.58
259 260 9.653287 CTTCATCTATTATTAATCCAACGGCTA 57.347 33.333 0.00 0.00 0.00 3.93
260 261 8.375506 TCTTCATCTATTATTAATCCAACGGCT 58.624 33.333 0.00 0.00 0.00 5.52
261 262 8.547967 TCTTCATCTATTATTAATCCAACGGC 57.452 34.615 0.00 0.00 0.00 5.68
262 263 9.155975 CCTCTTCATCTATTATTAATCCAACGG 57.844 37.037 0.00 0.00 0.00 4.44
263 264 9.155975 CCCTCTTCATCTATTATTAATCCAACG 57.844 37.037 0.00 0.00 0.00 4.10
266 267 8.543774 GCTCCCTCTTCATCTATTATTAATCCA 58.456 37.037 0.00 0.00 0.00 3.41
267 268 8.543774 TGCTCCCTCTTCATCTATTATTAATCC 58.456 37.037 0.00 0.00 0.00 3.01
268 269 9.377312 GTGCTCCCTCTTCATCTATTATTAATC 57.623 37.037 0.00 0.00 0.00 1.75
269 270 8.037758 CGTGCTCCCTCTTCATCTATTATTAAT 58.962 37.037 0.00 0.00 0.00 1.40
270 271 7.378966 CGTGCTCCCTCTTCATCTATTATTAA 58.621 38.462 0.00 0.00 0.00 1.40
271 272 6.071334 CCGTGCTCCCTCTTCATCTATTATTA 60.071 42.308 0.00 0.00 0.00 0.98
272 273 5.279708 CCGTGCTCCCTCTTCATCTATTATT 60.280 44.000 0.00 0.00 0.00 1.40
273 274 4.221703 CCGTGCTCCCTCTTCATCTATTAT 59.778 45.833 0.00 0.00 0.00 1.28
274 275 3.574396 CCGTGCTCCCTCTTCATCTATTA 59.426 47.826 0.00 0.00 0.00 0.98
275 276 2.366916 CCGTGCTCCCTCTTCATCTATT 59.633 50.000 0.00 0.00 0.00 1.73
276 277 1.967066 CCGTGCTCCCTCTTCATCTAT 59.033 52.381 0.00 0.00 0.00 1.98
277 278 1.063942 TCCGTGCTCCCTCTTCATCTA 60.064 52.381 0.00 0.00 0.00 1.98
278 279 0.324738 TCCGTGCTCCCTCTTCATCT 60.325 55.000 0.00 0.00 0.00 2.90
279 280 0.755686 ATCCGTGCTCCCTCTTCATC 59.244 55.000 0.00 0.00 0.00 2.92
280 281 0.467384 CATCCGTGCTCCCTCTTCAT 59.533 55.000 0.00 0.00 0.00 2.57
281 282 1.617018 CCATCCGTGCTCCCTCTTCA 61.617 60.000 0.00 0.00 0.00 3.02
282 283 1.144936 CCATCCGTGCTCCCTCTTC 59.855 63.158 0.00 0.00 0.00 2.87
283 284 2.370445 CCCATCCGTGCTCCCTCTT 61.370 63.158 0.00 0.00 0.00 2.85
284 285 2.765807 CCCATCCGTGCTCCCTCT 60.766 66.667 0.00 0.00 0.00 3.69
285 286 2.764128 TCCCATCCGTGCTCCCTC 60.764 66.667 0.00 0.00 0.00 4.30
286 287 2.238319 TACTCCCATCCGTGCTCCCT 62.238 60.000 0.00 0.00 0.00 4.20
287 288 1.760875 TACTCCCATCCGTGCTCCC 60.761 63.158 0.00 0.00 0.00 4.30
288 289 1.442148 GTACTCCCATCCGTGCTCC 59.558 63.158 0.00 0.00 0.00 4.70
289 290 1.442148 GGTACTCCCATCCGTGCTC 59.558 63.158 0.00 0.00 0.00 4.26
290 291 2.423898 CGGTACTCCCATCCGTGCT 61.424 63.158 0.00 0.00 39.51 4.40
291 292 1.952102 TTCGGTACTCCCATCCGTGC 61.952 60.000 0.00 0.00 43.94 5.34
292 293 0.750850 ATTCGGTACTCCCATCCGTG 59.249 55.000 0.00 0.00 43.94 4.94
293 294 0.750850 CATTCGGTACTCCCATCCGT 59.249 55.000 0.00 0.00 43.94 4.69
294 295 0.033504 CCATTCGGTACTCCCATCCG 59.966 60.000 0.00 0.00 44.76 4.18
295 296 0.396811 CCCATTCGGTACTCCCATCC 59.603 60.000 0.00 0.00 0.00 3.51
296 297 1.344763 CTCCCATTCGGTACTCCCATC 59.655 57.143 0.00 0.00 0.00 3.51
297 298 1.344087 ACTCCCATTCGGTACTCCCAT 60.344 52.381 0.00 0.00 0.00 4.00
298 299 0.042131 ACTCCCATTCGGTACTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
299 300 1.685517 GTACTCCCATTCGGTACTCCC 59.314 57.143 0.00 0.00 34.68 4.30
300 301 1.685517 GGTACTCCCATTCGGTACTCC 59.314 57.143 0.00 0.00 36.86 3.85
301 302 1.336125 CGGTACTCCCATTCGGTACTC 59.664 57.143 0.00 0.00 36.86 2.59
302 303 1.341383 ACGGTACTCCCATTCGGTACT 60.341 52.381 0.00 0.00 36.86 2.73
303 304 1.066152 GACGGTACTCCCATTCGGTAC 59.934 57.143 0.00 0.00 36.18 3.34
304 305 1.392589 GACGGTACTCCCATTCGGTA 58.607 55.000 0.00 0.00 0.00 4.02
305 306 1.660560 CGACGGTACTCCCATTCGGT 61.661 60.000 0.00 0.00 35.62 4.69
306 307 1.065273 CGACGGTACTCCCATTCGG 59.935 63.158 0.00 0.00 35.62 4.30
307 308 1.065273 CCGACGGTACTCCCATTCG 59.935 63.158 5.48 0.00 37.87 3.34
308 309 0.533951 AACCGACGGTACTCCCATTC 59.466 55.000 22.06 0.00 33.12 2.67
309 310 0.248289 CAACCGACGGTACTCCCATT 59.752 55.000 22.06 0.00 33.12 3.16
310 311 0.612732 TCAACCGACGGTACTCCCAT 60.613 55.000 22.06 0.00 33.12 4.00
311 312 0.612732 ATCAACCGACGGTACTCCCA 60.613 55.000 22.06 0.87 33.12 4.37
312 313 0.179119 CATCAACCGACGGTACTCCC 60.179 60.000 22.06 0.00 33.12 4.30
313 314 0.813184 TCATCAACCGACGGTACTCC 59.187 55.000 22.06 0.00 33.12 3.85
314 315 2.865343 ATCATCAACCGACGGTACTC 57.135 50.000 22.06 0.00 33.12 2.59
315 316 4.931661 ATTATCATCAACCGACGGTACT 57.068 40.909 22.06 1.82 33.12 2.73
316 317 7.647907 AATAATTATCATCAACCGACGGTAC 57.352 36.000 22.06 0.00 33.12 3.34
317 318 8.665643 AAAATAATTATCATCAACCGACGGTA 57.334 30.769 22.06 5.84 33.12 4.02
318 319 7.497909 AGAAAATAATTATCATCAACCGACGGT 59.502 33.333 15.37 15.37 37.65 4.83
319 320 7.861630 AGAAAATAATTATCATCAACCGACGG 58.138 34.615 13.61 13.61 0.00 4.79
356 357 7.227873 TCTGTCCCATAATAGTGTCAAAAACA 58.772 34.615 0.00 0.00 34.78 2.83
357 358 7.148239 CCTCTGTCCCATAATAGTGTCAAAAAC 60.148 40.741 0.00 0.00 0.00 2.43
358 359 6.884295 CCTCTGTCCCATAATAGTGTCAAAAA 59.116 38.462 0.00 0.00 0.00 1.94
359 360 6.414732 CCTCTGTCCCATAATAGTGTCAAAA 58.585 40.000 0.00 0.00 0.00 2.44
360 361 5.104527 CCCTCTGTCCCATAATAGTGTCAAA 60.105 44.000 0.00 0.00 0.00 2.69
361 362 4.408921 CCCTCTGTCCCATAATAGTGTCAA 59.591 45.833 0.00 0.00 0.00 3.18
362 363 3.967326 CCCTCTGTCCCATAATAGTGTCA 59.033 47.826 0.00 0.00 0.00 3.58
363 364 4.223953 TCCCTCTGTCCCATAATAGTGTC 58.776 47.826 0.00 0.00 0.00 3.67
364 365 4.227197 CTCCCTCTGTCCCATAATAGTGT 58.773 47.826 0.00 0.00 0.00 3.55
365 366 4.227197 ACTCCCTCTGTCCCATAATAGTG 58.773 47.826 0.00 0.00 0.00 2.74
366 367 4.561254 ACTCCCTCTGTCCCATAATAGT 57.439 45.455 0.00 0.00 0.00 2.12
367 368 7.560796 AAATACTCCCTCTGTCCCATAATAG 57.439 40.000 0.00 0.00 0.00 1.73
405 409 3.869272 GCTTGTGCGCCTCGATGG 61.869 66.667 4.18 0.00 39.35 3.51
414 418 3.254014 CTTCCCGGTTGCTTGTGCG 62.254 63.158 0.00 0.00 43.34 5.34
476 480 9.436957 CTCAACAATTGACCAAGTACTAGTATT 57.563 33.333 13.59 0.00 35.46 1.89
483 570 4.275936 AGCACTCAACAATTGACCAAGTAC 59.724 41.667 13.59 5.04 35.46 2.73
690 940 0.876777 TCGCACGTTTTGTCACGGAT 60.877 50.000 0.00 0.00 44.82 4.18
733 994 0.738389 CACGGTTGTTTTGCAGGAGT 59.262 50.000 0.00 0.00 0.00 3.85
734 995 0.594796 GCACGGTTGTTTTGCAGGAG 60.595 55.000 0.00 0.00 36.22 3.69
735 996 1.435515 GCACGGTTGTTTTGCAGGA 59.564 52.632 0.00 0.00 36.22 3.86
736 997 1.943693 CGCACGGTTGTTTTGCAGG 60.944 57.895 0.00 0.00 35.93 4.85
737 998 0.028242 TACGCACGGTTGTTTTGCAG 59.972 50.000 0.00 0.00 35.93 4.41
738 999 0.028242 CTACGCACGGTTGTTTTGCA 59.972 50.000 0.00 0.00 35.93 4.08
846 1899 0.893727 GGTGCGGTTGGAACTTGGAT 60.894 55.000 0.00 0.00 0.00 3.41
847 1900 1.527380 GGTGCGGTTGGAACTTGGA 60.527 57.895 0.00 0.00 0.00 3.53
849 1902 0.673437 AATGGTGCGGTTGGAACTTG 59.327 50.000 0.00 0.00 0.00 3.16
851 1904 0.893727 GGAATGGTGCGGTTGGAACT 60.894 55.000 0.00 0.00 0.00 3.01
852 1905 1.175983 TGGAATGGTGCGGTTGGAAC 61.176 55.000 0.00 0.00 0.00 3.62
861 1914 2.048603 GGTGGAGCTGGAATGGTGC 61.049 63.158 0.00 0.00 0.00 5.01
895 1969 1.866015 TGGATCTCCCGATGTGTTCT 58.134 50.000 0.00 0.00 37.93 3.01
1009 2117 0.413832 TTGAGCACTACTCCCCCTCT 59.586 55.000 0.00 0.00 45.61 3.69
1014 2122 0.391793 GCAGGTTGAGCACTACTCCC 60.392 60.000 0.00 0.00 45.61 4.30
1372 2543 2.050934 GGTAGCGGTCGAGGTCCTT 61.051 63.158 0.00 0.00 0.00 3.36
1400 2571 1.677966 TCCTCGTCCTCCTCGTTGG 60.678 63.158 0.00 0.00 37.10 3.77
2008 3249 1.612676 TCGAAAGAGTTGAGGGACGA 58.387 50.000 0.00 0.00 34.84 4.20
2044 3285 3.594603 TTGCCGGTTTTGAAGTTGAAA 57.405 38.095 1.90 0.00 0.00 2.69
2220 3461 4.170647 AGGGAGATGAGAGGAAGAAGAGAT 59.829 45.833 0.00 0.00 0.00 2.75
2247 3488 4.723248 GAGTTGTTCGATCAAATTCCCAC 58.277 43.478 10.38 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.