Multiple sequence alignment - TraesCS7B01G413100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G413100 chr7B 100.000 5232 0 0 1 5232 680901144 680906375 0.000000e+00 9662
1 TraesCS7B01G413100 chr7B 99.117 566 3 1 1 566 711427380 711426817 0.000000e+00 1016
2 TraesCS7B01G413100 chr7B 93.388 121 8 0 1208 1328 486726466 486726586 4.160000e-41 180
3 TraesCS7B01G413100 chr7B 74.894 470 79 22 967 1420 681220157 681220603 1.500000e-40 178
4 TraesCS7B01G413100 chr7B 86.429 140 17 2 993 1131 486726301 486726439 9.070000e-33 152
5 TraesCS7B01G413100 chr7D 96.261 1364 38 6 1639 2995 601904959 601906316 0.000000e+00 2224
6 TraesCS7B01G413100 chr7D 93.279 982 49 4 3669 4649 601909876 601910841 0.000000e+00 1432
7 TraesCS7B01G413100 chr7D 94.798 692 26 5 2991 3672 601909103 601909794 0.000000e+00 1070
8 TraesCS7B01G413100 chr7D 92.059 340 15 1 1168 1495 601901248 601901587 7.930000e-128 468
9 TraesCS7B01G413100 chr7D 94.118 238 9 2 841 1074 601900748 601900984 1.790000e-94 357
10 TraesCS7B01G413100 chr7D 85.532 235 12 7 572 785 601872962 601873195 5.270000e-55 226
11 TraesCS7B01G413100 chr7D 81.102 254 28 12 883 1119 602407063 602406813 8.950000e-43 185
12 TraesCS7B01G413100 chr7D 76.948 308 42 10 4689 4974 602015316 602015616 1.170000e-31 148
13 TraesCS7B01G413100 chr7A 96.887 1317 38 3 1641 2955 693469580 693470895 0.000000e+00 2202
14 TraesCS7B01G413100 chr7A 89.030 1413 110 26 3768 5165 693471365 693472747 0.000000e+00 1709
15 TraesCS7B01G413100 chr7A 94.583 720 22 5 938 1640 693464905 693465624 0.000000e+00 1098
16 TraesCS7B01G413100 chr7A 76.732 1487 220 62 3540 4970 694061644 694060228 0.000000e+00 713
17 TraesCS7B01G413100 chr7A 90.411 365 18 10 3416 3772 693470893 693471248 1.030000e-126 464
18 TraesCS7B01G413100 chr7A 77.597 308 39 11 4689 4974 693635235 693635534 5.420000e-35 159
19 TraesCS7B01G413100 chr7A 78.261 253 37 11 883 1119 694067681 694067431 4.220000e-31 147
20 TraesCS7B01G413100 chr3B 99.647 566 2 0 1 566 437811766 437812331 0.000000e+00 1035
21 TraesCS7B01G413100 chr5B 99.471 567 3 0 1 567 515195643 515196209 0.000000e+00 1031
22 TraesCS7B01G413100 chr5B 94.068 118 7 0 1211 1328 686755635 686755518 4.160000e-41 180
23 TraesCS7B01G413100 chr5B 94.068 118 7 0 1211 1328 686763702 686763585 4.160000e-41 180
24 TraesCS7B01G413100 chr5B 94.068 118 7 0 1211 1328 686771685 686771568 4.160000e-41 180
25 TraesCS7B01G413100 chr5B 86.429 140 17 2 993 1131 686755803 686755665 9.070000e-33 152
26 TraesCS7B01G413100 chr5B 86.429 140 17 2 993 1131 686763870 686763732 9.070000e-33 152
27 TraesCS7B01G413100 chr2A 99.298 570 4 0 1 570 98885427 98884858 0.000000e+00 1031
28 TraesCS7B01G413100 chr1A 99.297 569 4 0 3 571 26936672 26937240 0.000000e+00 1029
29 TraesCS7B01G413100 chr1A 99.118 567 5 0 1 567 20438472 20439038 0.000000e+00 1020
30 TraesCS7B01G413100 chr5A 99.117 566 4 1 1 566 46249090 46249654 0.000000e+00 1016
31 TraesCS7B01G413100 chr5A 82.857 490 66 10 1143 1626 605318897 605318420 1.740000e-114 424
32 TraesCS7B01G413100 chr5A 88.603 272 28 2 1967 2236 605318233 605317963 1.400000e-85 327
33 TraesCS7B01G413100 chr5A 90.323 124 10 2 2236 2358 605317936 605317814 1.510000e-35 161
34 TraesCS7B01G413100 chr5A 82.514 183 27 4 2464 2644 499653594 499653773 7.020000e-34 156
35 TraesCS7B01G413100 chr5A 94.805 77 3 1 1622 1698 605318324 605318249 9.200000e-23 119
36 TraesCS7B01G413100 chr4A 98.413 567 9 0 1 567 574179395 574179961 0.000000e+00 998
37 TraesCS7B01G413100 chr4A 99.589 487 2 0 81 567 582530781 582530295 0.000000e+00 889
38 TraesCS7B01G413100 chr3A 85.941 505 24 15 1 486 387289342 387288866 3.640000e-136 496
39 TraesCS7B01G413100 chr3A 94.498 309 11 2 4626 4929 658302948 658302641 6.130000e-129 472
40 TraesCS7B01G413100 chr5D 80.635 315 45 6 2451 2749 504562167 504562481 4.080000e-56 230
41 TraesCS7B01G413100 chrUn 85.714 126 18 0 994 1119 87207964 87207839 3.290000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G413100 chr7B 680901144 680906375 5231 False 9662.00 9662 100.00000 1 5232 1 chr7B.!!$F1 5231
1 TraesCS7B01G413100 chr7B 711426817 711427380 563 True 1016.00 1016 99.11700 1 566 1 chr7B.!!$R1 565
2 TraesCS7B01G413100 chr7D 601900748 601910841 10093 False 1110.20 2224 94.10300 841 4649 5 chr7D.!!$F3 3808
3 TraesCS7B01G413100 chr7A 693464905 693472747 7842 False 1368.25 2202 92.72775 938 5165 4 chr7A.!!$F2 4227
4 TraesCS7B01G413100 chr7A 694060228 694061644 1416 True 713.00 713 76.73200 3540 4970 1 chr7A.!!$R1 1430
5 TraesCS7B01G413100 chr3B 437811766 437812331 565 False 1035.00 1035 99.64700 1 566 1 chr3B.!!$F1 565
6 TraesCS7B01G413100 chr5B 515195643 515196209 566 False 1031.00 1031 99.47100 1 567 1 chr5B.!!$F1 566
7 TraesCS7B01G413100 chr2A 98884858 98885427 569 True 1031.00 1031 99.29800 1 570 1 chr2A.!!$R1 569
8 TraesCS7B01G413100 chr1A 26936672 26937240 568 False 1029.00 1029 99.29700 3 571 1 chr1A.!!$F2 568
9 TraesCS7B01G413100 chr1A 20438472 20439038 566 False 1020.00 1020 99.11800 1 567 1 chr1A.!!$F1 566
10 TraesCS7B01G413100 chr5A 46249090 46249654 564 False 1016.00 1016 99.11700 1 566 1 chr5A.!!$F1 565
11 TraesCS7B01G413100 chr5A 605317814 605318897 1083 True 257.75 424 89.14700 1143 2358 4 chr5A.!!$R1 1215
12 TraesCS7B01G413100 chr4A 574179395 574179961 566 False 998.00 998 98.41300 1 567 1 chr4A.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
836 837 0.037605 ACGGACCAAACAGACGGATC 60.038 55.0 0.00 0.0 0.00 3.36 F
838 839 0.245539 GGACCAAACAGACGGATCGA 59.754 55.0 0.00 0.0 0.00 3.59 F
1844 6117 0.038435 CATGGCCGTGCATTGTTTCA 60.038 50.0 13.11 0.0 0.00 2.69 F
2978 7291 0.251653 GGAAACCCAAGGAGAACCCC 60.252 60.0 0.00 0.0 36.73 4.95 F
3986 11316 0.179129 GTCAGAAAATGCCATGCCCG 60.179 55.0 0.00 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 6014 0.902531 GCTGGCCAAGGTAGTCACTA 59.097 55.000 7.01 0.00 0.00 2.74 R
2093 6368 1.600107 CCCATTTGGCTGCAGCAAT 59.400 52.632 37.63 26.48 44.36 3.56 R
3236 10344 0.322277 ACCATGCTCTTGCTCAGTGG 60.322 55.000 0.00 0.00 40.48 4.00 R
4018 11348 1.060713 CAACGGCTAACACAGTCTCG 58.939 55.000 0.00 0.00 0.00 4.04 R
5183 12588 0.106335 TGTTCAAACGGGCGTCCTAA 59.894 50.000 3.66 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
303 304 3.846588 ACCAAGATCTCCTTCCTTGCTAA 59.153 43.478 0.00 0.00 36.78 3.09
352 353 3.042682 TGGTTGCTATCGGGAGGATAAA 58.957 45.455 0.00 0.00 37.18 1.40
567 568 2.896168 CCGTATCGGTGCTTTTTAGGA 58.104 47.619 0.00 0.00 42.73 2.94
571 572 4.331717 CGTATCGGTGCTTTTTAGGATGTT 59.668 41.667 0.00 0.00 0.00 2.71
572 573 4.701956 ATCGGTGCTTTTTAGGATGTTG 57.298 40.909 0.00 0.00 0.00 3.33
573 574 2.817258 TCGGTGCTTTTTAGGATGTTGG 59.183 45.455 0.00 0.00 0.00 3.77
574 575 2.094752 CGGTGCTTTTTAGGATGTTGGG 60.095 50.000 0.00 0.00 0.00 4.12
575 576 2.897326 GGTGCTTTTTAGGATGTTGGGT 59.103 45.455 0.00 0.00 0.00 4.51
576 577 3.306019 GGTGCTTTTTAGGATGTTGGGTG 60.306 47.826 0.00 0.00 0.00 4.61
577 578 3.320826 GTGCTTTTTAGGATGTTGGGTGT 59.679 43.478 0.00 0.00 0.00 4.16
578 579 3.964031 TGCTTTTTAGGATGTTGGGTGTT 59.036 39.130 0.00 0.00 0.00 3.32
579 580 4.202202 TGCTTTTTAGGATGTTGGGTGTTG 60.202 41.667 0.00 0.00 0.00 3.33
580 581 4.306600 CTTTTTAGGATGTTGGGTGTTGC 58.693 43.478 0.00 0.00 0.00 4.17
581 582 2.969821 TTAGGATGTTGGGTGTTGCT 57.030 45.000 0.00 0.00 0.00 3.91
582 583 2.489938 TAGGATGTTGGGTGTTGCTC 57.510 50.000 0.00 0.00 0.00 4.26
583 584 0.478072 AGGATGTTGGGTGTTGCTCA 59.522 50.000 0.00 0.00 0.00 4.26
584 585 1.076024 AGGATGTTGGGTGTTGCTCAT 59.924 47.619 0.00 0.00 0.00 2.90
585 586 1.474077 GGATGTTGGGTGTTGCTCATC 59.526 52.381 0.00 0.00 0.00 2.92
586 587 2.161855 GATGTTGGGTGTTGCTCATCA 58.838 47.619 0.00 0.00 32.40 3.07
587 588 2.291209 TGTTGGGTGTTGCTCATCAT 57.709 45.000 0.00 0.00 0.00 2.45
588 589 3.431673 TGTTGGGTGTTGCTCATCATA 57.568 42.857 0.00 0.00 0.00 2.15
589 590 3.966979 TGTTGGGTGTTGCTCATCATAT 58.033 40.909 0.00 0.00 0.00 1.78
590 591 5.109500 TGTTGGGTGTTGCTCATCATATA 57.891 39.130 0.00 0.00 0.00 0.86
591 592 5.693961 TGTTGGGTGTTGCTCATCATATAT 58.306 37.500 0.00 0.00 0.00 0.86
592 593 6.128486 TGTTGGGTGTTGCTCATCATATATT 58.872 36.000 0.00 0.00 0.00 1.28
593 594 6.039605 TGTTGGGTGTTGCTCATCATATATTG 59.960 38.462 0.00 0.00 0.00 1.90
594 595 5.693961 TGGGTGTTGCTCATCATATATTGT 58.306 37.500 0.00 0.00 0.00 2.71
595 596 6.836242 TGGGTGTTGCTCATCATATATTGTA 58.164 36.000 0.00 0.00 0.00 2.41
596 597 7.460910 TGGGTGTTGCTCATCATATATTGTAT 58.539 34.615 0.00 0.00 0.00 2.29
597 598 7.607607 TGGGTGTTGCTCATCATATATTGTATC 59.392 37.037 0.00 0.00 0.00 2.24
598 599 7.066284 GGGTGTTGCTCATCATATATTGTATCC 59.934 40.741 0.00 0.00 0.00 2.59
599 600 7.607607 GGTGTTGCTCATCATATATTGTATCCA 59.392 37.037 0.00 0.00 0.00 3.41
600 601 8.446273 GTGTTGCTCATCATATATTGTATCCAC 58.554 37.037 0.00 0.00 0.00 4.02
601 602 8.377799 TGTTGCTCATCATATATTGTATCCACT 58.622 33.333 0.00 0.00 0.00 4.00
602 603 8.877779 GTTGCTCATCATATATTGTATCCACTC 58.122 37.037 0.00 0.00 0.00 3.51
603 604 8.137745 TGCTCATCATATATTGTATCCACTCA 57.862 34.615 0.00 0.00 0.00 3.41
604 605 8.596293 TGCTCATCATATATTGTATCCACTCAA 58.404 33.333 0.00 0.00 0.00 3.02
605 606 9.610705 GCTCATCATATATTGTATCCACTCAAT 57.389 33.333 0.00 0.00 37.85 2.57
634 635 4.799564 TTCAAATTAATGAAAGCGCCCT 57.200 36.364 2.29 0.00 36.42 5.19
635 636 4.108699 TCAAATTAATGAAAGCGCCCTG 57.891 40.909 2.29 0.00 0.00 4.45
636 637 3.509575 TCAAATTAATGAAAGCGCCCTGT 59.490 39.130 2.29 0.00 0.00 4.00
637 638 4.702612 TCAAATTAATGAAAGCGCCCTGTA 59.297 37.500 2.29 0.00 0.00 2.74
638 639 5.359576 TCAAATTAATGAAAGCGCCCTGTAT 59.640 36.000 2.29 0.00 0.00 2.29
639 640 5.438761 AATTAATGAAAGCGCCCTGTATC 57.561 39.130 2.29 0.00 0.00 2.24
640 641 1.299541 AATGAAAGCGCCCTGTATCG 58.700 50.000 2.29 0.00 0.00 2.92
641 642 0.464036 ATGAAAGCGCCCTGTATCGA 59.536 50.000 2.29 0.00 0.00 3.59
642 643 0.248012 TGAAAGCGCCCTGTATCGAA 59.752 50.000 2.29 0.00 0.00 3.71
643 644 1.338294 TGAAAGCGCCCTGTATCGAAA 60.338 47.619 2.29 0.00 0.00 3.46
644 645 1.735571 GAAAGCGCCCTGTATCGAAAA 59.264 47.619 2.29 0.00 0.00 2.29
645 646 1.816074 AAGCGCCCTGTATCGAAAAA 58.184 45.000 2.29 0.00 0.00 1.94
725 726 3.594134 CTTCATTTGAGTCGAAGGAGCT 58.406 45.455 7.49 0.00 33.93 4.09
726 727 3.238108 TCATTTGAGTCGAAGGAGCTC 57.762 47.619 4.71 4.71 0.00 4.09
727 728 2.562738 TCATTTGAGTCGAAGGAGCTCA 59.437 45.455 17.19 0.00 37.47 4.26
728 729 3.006859 TCATTTGAGTCGAAGGAGCTCAA 59.993 43.478 17.19 10.42 44.44 3.02
729 730 2.440539 TTGAGTCGAAGGAGCTCAAC 57.559 50.000 17.19 5.05 42.24 3.18
730 731 1.621992 TGAGTCGAAGGAGCTCAACT 58.378 50.000 17.19 10.03 36.46 3.16
731 732 1.964223 TGAGTCGAAGGAGCTCAACTT 59.036 47.619 17.19 10.55 36.46 2.66
732 733 2.288457 TGAGTCGAAGGAGCTCAACTTG 60.288 50.000 17.19 3.01 36.46 3.16
733 734 1.689273 AGTCGAAGGAGCTCAACTTGT 59.311 47.619 17.19 0.00 0.00 3.16
734 735 1.795286 GTCGAAGGAGCTCAACTTGTG 59.205 52.381 17.19 5.77 0.00 3.33
735 736 1.151668 CGAAGGAGCTCAACTTGTGG 58.848 55.000 17.19 0.00 0.00 4.17
736 737 1.541233 CGAAGGAGCTCAACTTGTGGT 60.541 52.381 17.19 0.00 0.00 4.16
737 738 2.576615 GAAGGAGCTCAACTTGTGGTT 58.423 47.619 17.19 0.00 38.93 3.67
745 746 2.671130 CAACTTGTGGTTGCTGGTTT 57.329 45.000 0.00 0.00 46.89 3.27
746 747 2.270047 CAACTTGTGGTTGCTGGTTTG 58.730 47.619 0.00 0.00 46.89 2.93
747 748 0.823460 ACTTGTGGTTGCTGGTTTGG 59.177 50.000 0.00 0.00 0.00 3.28
748 749 0.823460 CTTGTGGTTGCTGGTTTGGT 59.177 50.000 0.00 0.00 0.00 3.67
749 750 1.206849 CTTGTGGTTGCTGGTTTGGTT 59.793 47.619 0.00 0.00 0.00 3.67
750 751 0.820871 TGTGGTTGCTGGTTTGGTTC 59.179 50.000 0.00 0.00 0.00 3.62
751 752 0.820871 GTGGTTGCTGGTTTGGTTCA 59.179 50.000 0.00 0.00 0.00 3.18
752 753 1.110442 TGGTTGCTGGTTTGGTTCAG 58.890 50.000 0.00 0.00 0.00 3.02
753 754 1.111277 GGTTGCTGGTTTGGTTCAGT 58.889 50.000 0.00 0.00 33.81 3.41
754 755 1.480545 GGTTGCTGGTTTGGTTCAGTT 59.519 47.619 0.00 0.00 33.81 3.16
755 756 2.691011 GGTTGCTGGTTTGGTTCAGTTA 59.309 45.455 0.00 0.00 33.81 2.24
756 757 3.131400 GGTTGCTGGTTTGGTTCAGTTAA 59.869 43.478 0.00 0.00 33.81 2.01
757 758 4.382147 GGTTGCTGGTTTGGTTCAGTTAAA 60.382 41.667 0.00 0.00 33.81 1.52
758 759 5.172205 GTTGCTGGTTTGGTTCAGTTAAAA 58.828 37.500 0.00 0.00 33.81 1.52
759 760 5.407407 TGCTGGTTTGGTTCAGTTAAAAA 57.593 34.783 0.00 0.00 33.81 1.94
779 780 2.159327 AAACTAGTGGTTCGTTCGGG 57.841 50.000 0.00 0.00 37.12 5.14
780 781 0.320160 AACTAGTGGTTCGTTCGGGC 60.320 55.000 0.00 0.00 31.69 6.13
781 782 1.183676 ACTAGTGGTTCGTTCGGGCT 61.184 55.000 0.00 0.00 0.00 5.19
782 783 0.736325 CTAGTGGTTCGTTCGGGCTG 60.736 60.000 0.00 0.00 0.00 4.85
783 784 2.162338 TAGTGGTTCGTTCGGGCTGG 62.162 60.000 0.00 0.00 0.00 4.85
784 785 4.323477 TGGTTCGTTCGGGCTGGG 62.323 66.667 0.00 0.00 0.00 4.45
785 786 4.324991 GGTTCGTTCGGGCTGGGT 62.325 66.667 0.00 0.00 0.00 4.51
786 787 2.741211 GTTCGTTCGGGCTGGGTC 60.741 66.667 0.00 0.00 0.00 4.46
787 788 3.235481 TTCGTTCGGGCTGGGTCA 61.235 61.111 0.00 0.00 0.00 4.02
788 789 3.234630 TTCGTTCGGGCTGGGTCAG 62.235 63.158 0.00 0.00 34.12 3.51
789 790 4.003788 CGTTCGGGCTGGGTCAGT 62.004 66.667 0.00 0.00 33.43 3.41
790 791 2.642254 CGTTCGGGCTGGGTCAGTA 61.642 63.158 0.00 0.00 33.43 2.74
791 792 1.079336 GTTCGGGCTGGGTCAGTAC 60.079 63.158 0.00 0.00 33.43 2.73
792 793 2.642254 TTCGGGCTGGGTCAGTACG 61.642 63.158 0.00 0.00 35.40 3.67
793 794 4.814294 CGGGCTGGGTCAGTACGC 62.814 72.222 0.00 0.00 38.96 4.42
794 795 4.468689 GGGCTGGGTCAGTACGCC 62.469 72.222 0.00 0.00 37.75 5.68
795 796 3.391382 GGCTGGGTCAGTACGCCT 61.391 66.667 0.00 0.00 37.75 5.52
796 797 2.125512 GCTGGGTCAGTACGCCTG 60.126 66.667 4.62 0.00 42.97 4.85
797 798 2.579201 CTGGGTCAGTACGCCTGG 59.421 66.667 3.17 0.00 41.83 4.45
798 799 3.665675 CTGGGTCAGTACGCCTGGC 62.666 68.421 9.11 9.11 45.45 4.85
799 800 3.391382 GGGTCAGTACGCCTGGCT 61.391 66.667 17.92 6.50 45.48 4.75
800 801 2.184579 GGTCAGTACGCCTGGCTC 59.815 66.667 17.92 7.17 45.48 4.70
801 802 2.202623 GTCAGTACGCCTGGCTCG 60.203 66.667 17.92 4.42 42.76 5.03
802 803 3.449227 TCAGTACGCCTGGCTCGG 61.449 66.667 17.92 3.61 41.83 4.63
803 804 4.514577 CAGTACGCCTGGCTCGGG 62.515 72.222 17.92 3.21 37.54 5.14
829 830 4.025401 GCGCCACGGACCAAACAG 62.025 66.667 0.00 0.00 0.00 3.16
830 831 2.280524 CGCCACGGACCAAACAGA 60.281 61.111 0.00 0.00 0.00 3.41
831 832 2.604174 CGCCACGGACCAAACAGAC 61.604 63.158 0.00 0.00 0.00 3.51
832 833 2.604174 GCCACGGACCAAACAGACG 61.604 63.158 0.00 0.00 0.00 4.18
833 834 1.959226 CCACGGACCAAACAGACGG 60.959 63.158 0.00 0.00 0.00 4.79
834 835 1.068417 CACGGACCAAACAGACGGA 59.932 57.895 0.00 0.00 0.00 4.69
835 836 0.320421 CACGGACCAAACAGACGGAT 60.320 55.000 0.00 0.00 0.00 4.18
836 837 0.037605 ACGGACCAAACAGACGGATC 60.038 55.000 0.00 0.00 0.00 3.36
837 838 1.076533 CGGACCAAACAGACGGATCG 61.077 60.000 0.00 0.00 0.00 3.69
838 839 0.245539 GGACCAAACAGACGGATCGA 59.754 55.000 0.00 0.00 0.00 3.59
839 840 1.630148 GACCAAACAGACGGATCGAG 58.370 55.000 0.00 0.00 0.00 4.04
851 852 1.226717 GATCGAGCCACCGTCAGTC 60.227 63.158 0.00 0.00 0.00 3.51
853 854 3.680786 CGAGCCACCGTCAGTCCA 61.681 66.667 0.00 0.00 0.00 4.02
858 859 4.293648 CACCGTCAGTCCACCGCA 62.294 66.667 0.00 0.00 0.00 5.69
865 866 2.910479 AGTCCACCGCACGACTCA 60.910 61.111 0.00 0.00 34.15 3.41
876 877 0.249447 CACGACTCAACAGCCACTCA 60.249 55.000 0.00 0.00 0.00 3.41
906 907 1.521681 CTCCGCTCCCCAAATCGAC 60.522 63.158 0.00 0.00 0.00 4.20
1124 1129 2.753029 GCTGCTCAGGGTTGGTCT 59.247 61.111 0.00 0.00 0.00 3.85
1143 1148 2.657459 TCTCCCTCTCCTCTCCTTTTCT 59.343 50.000 0.00 0.00 0.00 2.52
1147 1152 2.115427 CTCTCCTCTCCTTTTCTCCCC 58.885 57.143 0.00 0.00 0.00 4.81
1334 1514 1.624479 ATGCAGGAGGAGCAGGACAG 61.624 60.000 0.00 0.00 46.36 3.51
1469 1665 4.455533 GTCTCATACTTTGGTGTGATTGCA 59.544 41.667 0.00 0.00 41.46 4.08
1470 1666 5.124457 GTCTCATACTTTGGTGTGATTGCAT 59.876 40.000 0.00 0.00 41.46 3.96
1620 4249 1.160137 GTGAGATGCACCAGTTCCAC 58.840 55.000 0.00 0.00 41.78 4.02
1624 4253 1.074405 AGATGCACCAGTTCCACATGT 59.926 47.619 0.00 0.00 0.00 3.21
1634 4263 2.714250 AGTTCCACATGTTTACTGGGGA 59.286 45.455 0.00 0.00 44.48 4.81
1694 5967 0.328592 GGAGGGAGAGGGGTGAAAAC 59.671 60.000 0.00 0.00 0.00 2.43
1701 5974 3.181479 GGAGAGGGGTGAAAACAAAACAC 60.181 47.826 0.00 0.00 0.00 3.32
1741 6014 4.655649 AGGAGAACAAAGGGCAAAGAAAAT 59.344 37.500 0.00 0.00 0.00 1.82
1742 6015 5.838521 AGGAGAACAAAGGGCAAAGAAAATA 59.161 36.000 0.00 0.00 0.00 1.40
1844 6117 0.038435 CATGGCCGTGCATTGTTTCA 60.038 50.000 13.11 0.00 0.00 2.69
1888 6161 3.054361 AGTTATGGCATCGAAGACCCTTT 60.054 43.478 1.65 0.00 42.51 3.11
1937 6210 5.706916 AGTTAAAGTGATTGCAATCAGCTG 58.293 37.500 36.29 7.63 45.38 4.24
1986 6259 3.325135 ACAGAGATGAACTTTCCTCCGTT 59.675 43.478 0.00 0.00 0.00 4.44
2002 6275 3.929094 TCCGTTAGTAAAAATGTCCGCT 58.071 40.909 0.00 0.00 0.00 5.52
2049 6322 2.036733 CGCCGAGGAGTTCCCAAATATA 59.963 50.000 0.00 0.00 37.41 0.86
2093 6368 2.705658 ACCAGGTGAGACAGTTTCATGA 59.294 45.455 0.00 0.00 0.00 3.07
2222 6497 1.032014 TTTTGGGTGCTGAGCAGTTC 58.968 50.000 7.71 0.53 40.08 3.01
2360 6663 1.300971 TGCAAGTGAATGGAGCTCGC 61.301 55.000 7.83 2.46 0.00 5.03
2378 6681 1.893062 CTGTCCGCCTGATCAGACA 59.107 57.895 24.62 18.03 37.65 3.41
2384 6687 2.297315 TCCGCCTGATCAGACATGATAC 59.703 50.000 24.62 2.24 46.39 2.24
2785 7092 2.178912 TGATCGACAAACTTGGTCCC 57.821 50.000 0.00 0.00 31.55 4.46
2815 7122 4.382147 CCAAGTAGTCAGCTCCTTTAGTCC 60.382 50.000 0.00 0.00 0.00 3.85
2828 7136 6.275692 TCCTTTAGTCCTCCTTTTCCTTTT 57.724 37.500 0.00 0.00 0.00 2.27
2829 7137 6.068670 TCCTTTAGTCCTCCTTTTCCTTTTG 58.931 40.000 0.00 0.00 0.00 2.44
2978 7291 0.251653 GGAAACCCAAGGAGAACCCC 60.252 60.000 0.00 0.00 36.73 4.95
3080 10188 4.154347 GAGGGACTGGGCAGAGCG 62.154 72.222 0.00 0.00 41.55 5.03
3141 10249 2.211806 GCTCATGGCATCAGAGAAGAC 58.788 52.381 16.56 0.00 41.35 3.01
3169 10277 2.162921 CTGCTTTGGTGTCGTCGCTG 62.163 60.000 0.00 0.00 0.00 5.18
3205 10313 0.979709 CTGGAGCAGGGATGAGTGGA 60.980 60.000 0.00 0.00 0.00 4.02
3229 10337 1.205893 GGAGTCTTCATGCCGTCTTCT 59.794 52.381 0.00 0.00 0.00 2.85
3269 10377 1.672356 ATGGTGGAAGCGACACTGC 60.672 57.895 8.07 0.00 38.83 4.40
3343 10457 3.092301 TGACTCCATGAGAGATTCGTGT 58.908 45.455 15.51 0.00 46.50 4.49
3360 10474 2.046988 TGACGGCTGGATGTGCTG 60.047 61.111 0.00 0.00 42.11 4.41
3451 10565 2.076863 ACTTCACCTAGATTTGTGCGC 58.923 47.619 0.00 0.00 32.51 6.09
3453 10567 0.739462 TCACCTAGATTTGTGCGCCG 60.739 55.000 4.18 0.00 32.51 6.46
3613 10727 0.520847 GCTGAAAGAAGTGAGCCAGC 59.479 55.000 0.00 0.00 39.88 4.85
3689 10889 7.850982 GTGTTGTATTAGCATTGCACTATGTAC 59.149 37.037 11.91 5.74 0.00 2.90
3690 10890 6.763303 TGTATTAGCATTGCACTATGTACG 57.237 37.500 11.91 0.00 0.00 3.67
3691 10891 6.277605 TGTATTAGCATTGCACTATGTACGT 58.722 36.000 11.91 0.00 0.00 3.57
3692 10892 7.427214 TGTATTAGCATTGCACTATGTACGTA 58.573 34.615 11.91 0.00 0.00 3.57
3717 10917 7.494211 AGTATTTTCCCACTTGGTTTTGTAAC 58.506 34.615 0.00 0.00 34.77 2.50
3736 10937 2.378038 ACACAACTGAACATGTTGGCT 58.622 42.857 17.58 0.00 46.28 4.75
3840 11162 5.316987 ACTAATACCTTGGGATAGCAATGC 58.683 41.667 0.00 0.00 0.00 3.56
3865 11187 8.311109 GCTTAATTTTGGTTTCTTATTCCCTCA 58.689 33.333 0.00 0.00 0.00 3.86
3890 11220 4.852134 AACAAAGCTCATGCATGTTGTA 57.148 36.364 25.07 9.19 44.18 2.41
3891 11221 5.395682 AACAAAGCTCATGCATGTTGTAT 57.604 34.783 25.07 16.10 44.18 2.29
3892 11222 5.395682 ACAAAGCTCATGCATGTTGTATT 57.604 34.783 24.12 13.74 42.74 1.89
3893 11223 5.165676 ACAAAGCTCATGCATGTTGTATTG 58.834 37.500 24.12 22.73 42.74 1.90
3894 11224 5.165676 CAAAGCTCATGCATGTTGTATTGT 58.834 37.500 25.43 3.23 42.74 2.71
3895 11225 5.395682 AAGCTCATGCATGTTGTATTGTT 57.604 34.783 25.43 7.15 42.74 2.83
3896 11226 4.740268 AGCTCATGCATGTTGTATTGTTG 58.260 39.130 25.43 0.00 42.74 3.33
3897 11227 4.219070 AGCTCATGCATGTTGTATTGTTGT 59.781 37.500 25.43 0.00 42.74 3.32
3986 11316 0.179129 GTCAGAAAATGCCATGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
4276 11613 1.884579 CAGGTGCTGCTTTTGTCATCT 59.115 47.619 0.00 0.00 0.00 2.90
4280 11617 3.691118 GGTGCTGCTTTTGTCATCTGATA 59.309 43.478 0.00 0.00 0.00 2.15
4289 11626 8.795513 TGCTTTTGTCATCTGATATTTCTTTGA 58.204 29.630 0.00 0.00 0.00 2.69
4410 11755 7.661536 AGACACTCTAGGATTTATGCTTACA 57.338 36.000 0.00 0.00 0.00 2.41
4464 11809 7.227711 TCAGATTGAACGGTGAAATCAAAACTA 59.772 33.333 14.76 0.00 36.72 2.24
4478 11823 7.944729 AATCAAAACTAGTATGGCATTCACT 57.055 32.000 4.78 6.73 0.00 3.41
4510 11869 7.060421 TGAAGTTATGTTCTGGAAAACTCCTT 58.940 34.615 0.00 0.00 30.37 3.36
4713 12095 1.002868 CTGGAGCAGACACTTGGGG 60.003 63.158 0.00 0.00 32.44 4.96
4740 12128 0.546122 TGCCGCTCCCATGAAGTATT 59.454 50.000 0.00 0.00 0.00 1.89
4769 12157 5.945310 ACAACATATATGGGTGCTTCTGAT 58.055 37.500 16.96 0.00 0.00 2.90
4866 12255 5.996513 GCCTGACTGAATATGTCTGAATCAT 59.003 40.000 0.00 0.00 36.08 2.45
4875 12264 8.245491 TGAATATGTCTGAATCATTGTGGTTTG 58.755 33.333 0.00 0.00 0.00 2.93
4899 12288 6.205853 TGTGGTTTATCTATGCTTGAAAACGT 59.794 34.615 0.00 0.00 0.00 3.99
4906 12295 6.887376 TCTATGCTTGAAAACGTTAGCTAG 57.113 37.500 18.70 16.27 34.77 3.42
4907 12296 3.806316 TGCTTGAAAACGTTAGCTAGC 57.194 42.857 21.10 21.10 34.77 3.42
4908 12297 3.399330 TGCTTGAAAACGTTAGCTAGCT 58.601 40.909 23.12 23.12 34.77 3.32
4909 12298 4.562082 TGCTTGAAAACGTTAGCTAGCTA 58.438 39.130 20.67 20.67 34.77 3.32
4910 12299 5.175859 TGCTTGAAAACGTTAGCTAGCTAT 58.824 37.500 24.69 9.13 34.77 2.97
4913 12302 7.118088 GCTTGAAAACGTTAGCTAGCTATTAC 58.882 38.462 24.69 18.86 0.00 1.89
4921 12310 8.767478 ACGTTAGCTAGCTATTACTTTTTCAA 57.233 30.769 24.69 4.70 0.00 2.69
4958 12347 4.799564 AATGTTTCCATTGCCGTGTAAT 57.200 36.364 0.00 0.00 39.81 1.89
4959 12348 4.799564 ATGTTTCCATTGCCGTGTAATT 57.200 36.364 0.00 0.00 0.00 1.40
4961 12350 4.302455 TGTTTCCATTGCCGTGTAATTTG 58.698 39.130 0.00 0.00 0.00 2.32
4963 12352 2.166829 TCCATTGCCGTGTAATTTGCT 58.833 42.857 0.00 0.00 0.00 3.91
4992 12381 7.554243 CGCAGGTTTTCTAAAAGAAGATTTC 57.446 36.000 0.00 0.00 35.37 2.17
4995 12384 7.521585 GCAGGTTTTCTAAAAGAAGATTTCGGA 60.522 37.037 0.00 0.00 35.37 4.55
4996 12385 8.349983 CAGGTTTTCTAAAAGAAGATTTCGGAA 58.650 33.333 0.00 0.00 35.37 4.30
4997 12386 8.909923 AGGTTTTCTAAAAGAAGATTTCGGAAA 58.090 29.630 5.52 5.52 35.37 3.13
4998 12387 9.692749 GGTTTTCTAAAAGAAGATTTCGGAAAT 57.307 29.630 15.45 15.45 35.37 2.17
5032 12435 5.378292 GGAAATTGTCCCTCTGTCTTTTC 57.622 43.478 0.00 0.00 41.10 2.29
5040 12443 4.081586 GTCCCTCTGTCTTTTCCGAAGTAT 60.082 45.833 0.00 0.00 0.00 2.12
5041 12444 5.126707 GTCCCTCTGTCTTTTCCGAAGTATA 59.873 44.000 0.00 0.00 0.00 1.47
5042 12445 5.718130 TCCCTCTGTCTTTTCCGAAGTATAA 59.282 40.000 0.00 0.00 0.00 0.98
5045 12448 7.389607 CCCTCTGTCTTTTCCGAAGTATAAAAA 59.610 37.037 0.00 0.00 0.00 1.94
5064 12467 5.613358 AAAAAGAATGTGAGACGCTAAGG 57.387 39.130 0.00 0.00 0.00 2.69
5066 12469 3.512033 AGAATGTGAGACGCTAAGGTC 57.488 47.619 0.00 0.00 37.19 3.85
5074 12477 5.407387 TGTGAGACGCTAAGGTCAAATTAAC 59.593 40.000 0.00 0.00 39.42 2.01
5085 12488 0.600557 CAAATTAACCCAGCGTGGCA 59.399 50.000 0.00 0.00 35.79 4.92
5088 12491 1.102978 ATTAACCCAGCGTGGCATTC 58.897 50.000 0.00 0.00 35.79 2.67
5092 12495 2.568090 CCAGCGTGGCATTCAACC 59.432 61.111 0.00 0.00 0.00 3.77
5098 12501 1.668628 GCGTGGCATTCAACCGAAAAT 60.669 47.619 0.00 0.00 34.01 1.82
5107 12510 5.449177 GCATTCAACCGAAAATTCCCTAGAG 60.449 44.000 0.00 0.00 34.01 2.43
5123 12528 4.384647 CCCTAGAGCCATAAAAAGAGCAGT 60.385 45.833 0.00 0.00 0.00 4.40
5127 12532 2.232208 AGCCATAAAAAGAGCAGTTGGC 59.768 45.455 2.89 2.89 46.59 4.52
5128 12533 2.675032 GCCATAAAAAGAGCAGTTGGCC 60.675 50.000 0.00 0.00 46.50 5.36
5139 12544 1.250328 CAGTTGGCCTGAGATGCAAA 58.750 50.000 3.32 0.00 44.49 3.68
5141 12546 1.891150 AGTTGGCCTGAGATGCAAAAG 59.109 47.619 3.32 0.00 0.00 2.27
5143 12548 1.830279 TGGCCTGAGATGCAAAAGAG 58.170 50.000 3.32 0.00 0.00 2.85
5176 12581 3.872511 CACAATGCTGGGCAAGAATAA 57.127 42.857 0.00 0.00 43.62 1.40
5177 12582 3.514645 CACAATGCTGGGCAAGAATAAC 58.485 45.455 0.00 0.00 43.62 1.89
5178 12583 3.056678 CACAATGCTGGGCAAGAATAACA 60.057 43.478 0.00 0.00 43.62 2.41
5179 12584 3.194116 ACAATGCTGGGCAAGAATAACAG 59.806 43.478 0.00 0.00 43.62 3.16
5180 12585 2.584835 TGCTGGGCAAGAATAACAGT 57.415 45.000 0.00 0.00 34.76 3.55
5181 12586 3.712016 TGCTGGGCAAGAATAACAGTA 57.288 42.857 0.00 0.00 34.76 2.74
5182 12587 4.027674 TGCTGGGCAAGAATAACAGTAA 57.972 40.909 0.00 0.00 34.76 2.24
5183 12588 4.599041 TGCTGGGCAAGAATAACAGTAAT 58.401 39.130 0.00 0.00 34.76 1.89
5184 12589 5.016173 TGCTGGGCAAGAATAACAGTAATT 58.984 37.500 0.00 0.00 34.76 1.40
5185 12590 6.184068 TGCTGGGCAAGAATAACAGTAATTA 58.816 36.000 0.00 0.00 34.76 1.40
5186 12591 6.318648 TGCTGGGCAAGAATAACAGTAATTAG 59.681 38.462 0.00 0.00 34.76 1.73
5187 12592 6.238759 GCTGGGCAAGAATAACAGTAATTAGG 60.239 42.308 0.00 0.00 0.00 2.69
5188 12593 6.964464 TGGGCAAGAATAACAGTAATTAGGA 58.036 36.000 0.00 0.00 0.00 2.94
5189 12594 6.826741 TGGGCAAGAATAACAGTAATTAGGAC 59.173 38.462 0.00 0.00 0.00 3.85
5190 12595 6.018180 GGGCAAGAATAACAGTAATTAGGACG 60.018 42.308 0.00 0.00 0.00 4.79
5191 12596 6.419771 GCAAGAATAACAGTAATTAGGACGC 58.580 40.000 0.00 0.00 0.00 5.19
5192 12597 6.511282 GCAAGAATAACAGTAATTAGGACGCC 60.511 42.308 0.00 0.00 0.00 5.68
5193 12598 5.608449 AGAATAACAGTAATTAGGACGCCC 58.392 41.667 0.00 0.00 0.00 6.13
5194 12599 2.304751 AACAGTAATTAGGACGCCCG 57.695 50.000 0.00 0.00 37.58 6.13
5195 12600 1.188863 ACAGTAATTAGGACGCCCGT 58.811 50.000 0.00 0.00 37.58 5.28
5196 12601 1.551883 ACAGTAATTAGGACGCCCGTT 59.448 47.619 0.00 0.00 37.58 4.44
5197 12602 2.027837 ACAGTAATTAGGACGCCCGTTT 60.028 45.455 0.00 0.00 37.58 3.60
5198 12603 2.350498 CAGTAATTAGGACGCCCGTTTG 59.650 50.000 0.00 0.00 37.58 2.93
5199 12604 2.234414 AGTAATTAGGACGCCCGTTTGA 59.766 45.455 0.00 0.00 37.58 2.69
5200 12605 2.188062 AATTAGGACGCCCGTTTGAA 57.812 45.000 0.00 0.00 37.58 2.69
5201 12606 1.445871 ATTAGGACGCCCGTTTGAAC 58.554 50.000 0.00 0.00 37.58 3.18
5202 12607 0.106335 TTAGGACGCCCGTTTGAACA 59.894 50.000 0.00 0.00 37.58 3.18
5203 12608 0.322322 TAGGACGCCCGTTTGAACAT 59.678 50.000 0.00 0.00 37.58 2.71
5204 12609 1.209127 GGACGCCCGTTTGAACATG 59.791 57.895 0.00 0.00 0.00 3.21
5205 12610 1.231958 GGACGCCCGTTTGAACATGA 61.232 55.000 0.00 0.00 0.00 3.07
5206 12611 0.589223 GACGCCCGTTTGAACATGAA 59.411 50.000 0.00 0.00 0.00 2.57
5207 12612 1.199097 GACGCCCGTTTGAACATGAAT 59.801 47.619 0.00 0.00 0.00 2.57
5208 12613 1.611491 ACGCCCGTTTGAACATGAATT 59.389 42.857 0.00 0.00 0.00 2.17
5209 12614 1.984990 CGCCCGTTTGAACATGAATTG 59.015 47.619 0.00 0.00 0.00 2.32
5210 12615 2.351253 CGCCCGTTTGAACATGAATTGA 60.351 45.455 0.00 0.00 0.00 2.57
5211 12616 3.673052 CGCCCGTTTGAACATGAATTGAT 60.673 43.478 0.00 0.00 0.00 2.57
5212 12617 3.859386 GCCCGTTTGAACATGAATTGATC 59.141 43.478 0.00 0.00 0.00 2.92
5213 12618 4.617995 GCCCGTTTGAACATGAATTGATCA 60.618 41.667 0.00 0.00 43.67 2.92
5214 12619 5.468592 CCCGTTTGAACATGAATTGATCAA 58.531 37.500 11.26 11.26 43.10 2.57
5221 12626 9.558648 TTTGAACATGAATTGATCAAATCGTAG 57.441 29.630 16.11 13.06 46.20 3.51
5222 12627 8.267620 TGAACATGAATTGATCAAATCGTAGT 57.732 30.769 16.11 13.56 42.54 2.73
5223 12628 8.729756 TGAACATGAATTGATCAAATCGTAGTT 58.270 29.630 21.02 21.02 42.54 2.24
5224 12629 9.559958 GAACATGAATTGATCAAATCGTAGTTT 57.440 29.630 21.40 14.69 42.54 2.66
5229 12634 8.181573 TGAATTGATCAAATCGTAGTTTAAGGC 58.818 33.333 13.09 0.00 34.30 4.35
5230 12635 7.865706 ATTGATCAAATCGTAGTTTAAGGCT 57.134 32.000 13.09 0.00 0.00 4.58
5231 12636 6.903883 TGATCAAATCGTAGTTTAAGGCTC 57.096 37.500 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
303 304 1.614317 GCAGGTAACCTCAATGGCTGT 60.614 52.381 0.00 0.00 40.22 4.40
352 353 2.441532 GACCATGCTGCTGCCCAT 60.442 61.111 13.47 0.00 38.71 4.00
567 568 2.291209 TGATGAGCAACACCCAACAT 57.709 45.000 0.00 0.00 0.00 2.71
571 572 5.693961 ACAATATATGATGAGCAACACCCA 58.306 37.500 0.00 0.00 0.00 4.51
572 573 7.066284 GGATACAATATATGATGAGCAACACCC 59.934 40.741 0.00 0.00 0.00 4.61
573 574 7.978982 GGATACAATATATGATGAGCAACACC 58.021 38.462 0.00 0.00 0.00 4.16
606 607 8.603181 GGCGCTTTCATTAATTTGAAATGTATT 58.397 29.630 7.64 0.00 42.87 1.89
607 608 7.224557 GGGCGCTTTCATTAATTTGAAATGTAT 59.775 33.333 7.64 0.00 42.87 2.29
608 609 6.533367 GGGCGCTTTCATTAATTTGAAATGTA 59.467 34.615 7.64 0.00 42.87 2.29
609 610 5.351189 GGGCGCTTTCATTAATTTGAAATGT 59.649 36.000 7.64 0.00 42.87 2.71
610 611 5.581874 AGGGCGCTTTCATTAATTTGAAATG 59.418 36.000 7.64 0.36 42.87 2.32
611 612 5.581874 CAGGGCGCTTTCATTAATTTGAAAT 59.418 36.000 7.64 0.00 42.87 2.17
612 613 4.928615 CAGGGCGCTTTCATTAATTTGAAA 59.071 37.500 7.64 5.44 41.92 2.69
613 614 4.021544 ACAGGGCGCTTTCATTAATTTGAA 60.022 37.500 7.64 0.00 33.89 2.69
614 615 3.509575 ACAGGGCGCTTTCATTAATTTGA 59.490 39.130 7.64 0.00 0.00 2.69
615 616 3.848726 ACAGGGCGCTTTCATTAATTTG 58.151 40.909 7.64 0.00 0.00 2.32
616 617 5.505654 CGATACAGGGCGCTTTCATTAATTT 60.506 40.000 7.64 0.00 0.00 1.82
617 618 4.024048 CGATACAGGGCGCTTTCATTAATT 60.024 41.667 7.64 0.00 0.00 1.40
618 619 3.498397 CGATACAGGGCGCTTTCATTAAT 59.502 43.478 7.64 0.00 0.00 1.40
619 620 2.869801 CGATACAGGGCGCTTTCATTAA 59.130 45.455 7.64 0.00 0.00 1.40
620 621 2.101750 TCGATACAGGGCGCTTTCATTA 59.898 45.455 7.64 0.00 0.00 1.90
621 622 1.134521 TCGATACAGGGCGCTTTCATT 60.135 47.619 7.64 0.00 0.00 2.57
622 623 0.464036 TCGATACAGGGCGCTTTCAT 59.536 50.000 7.64 0.00 0.00 2.57
623 624 0.248012 TTCGATACAGGGCGCTTTCA 59.752 50.000 7.64 0.00 0.00 2.69
624 625 1.365699 TTTCGATACAGGGCGCTTTC 58.634 50.000 7.64 0.00 0.00 2.62
625 626 1.816074 TTTTCGATACAGGGCGCTTT 58.184 45.000 7.64 0.00 0.00 3.51
626 627 1.816074 TTTTTCGATACAGGGCGCTT 58.184 45.000 7.64 0.00 0.00 4.68
627 628 3.543884 TTTTTCGATACAGGGCGCT 57.456 47.368 7.64 0.00 0.00 5.92
704 705 3.594134 AGCTCCTTCGACTCAAATGAAG 58.406 45.455 0.00 0.00 39.01 3.02
705 706 3.006859 TGAGCTCCTTCGACTCAAATGAA 59.993 43.478 12.15 0.00 37.49 2.57
706 707 2.562738 TGAGCTCCTTCGACTCAAATGA 59.437 45.455 12.15 0.00 37.49 2.57
707 708 2.964740 TGAGCTCCTTCGACTCAAATG 58.035 47.619 12.15 0.00 37.49 2.32
708 709 3.685139 TTGAGCTCCTTCGACTCAAAT 57.315 42.857 12.15 0.00 44.97 2.32
710 711 1.964223 AGTTGAGCTCCTTCGACTCAA 59.036 47.619 12.15 10.42 45.56 3.02
711 712 1.621992 AGTTGAGCTCCTTCGACTCA 58.378 50.000 12.15 0.00 37.25 3.41
712 713 2.288518 ACAAGTTGAGCTCCTTCGACTC 60.289 50.000 12.15 0.00 40.21 3.36
713 714 1.689273 ACAAGTTGAGCTCCTTCGACT 59.311 47.619 12.15 4.74 42.36 4.18
714 715 1.795286 CACAAGTTGAGCTCCTTCGAC 59.205 52.381 12.15 2.41 0.00 4.20
715 716 1.270305 CCACAAGTTGAGCTCCTTCGA 60.270 52.381 12.15 0.00 0.00 3.71
716 717 1.151668 CCACAAGTTGAGCTCCTTCG 58.848 55.000 12.15 6.06 0.00 3.79
717 718 2.262423 ACCACAAGTTGAGCTCCTTC 57.738 50.000 12.15 1.41 0.00 3.46
718 719 2.736670 AACCACAAGTTGAGCTCCTT 57.263 45.000 12.15 5.27 37.29 3.36
727 728 1.206849 CCAAACCAGCAACCACAAGTT 59.793 47.619 0.00 0.00 40.16 2.66
728 729 0.823460 CCAAACCAGCAACCACAAGT 59.177 50.000 0.00 0.00 0.00 3.16
729 730 0.823460 ACCAAACCAGCAACCACAAG 59.177 50.000 0.00 0.00 0.00 3.16
730 731 1.205893 GAACCAAACCAGCAACCACAA 59.794 47.619 0.00 0.00 0.00 3.33
731 732 0.820871 GAACCAAACCAGCAACCACA 59.179 50.000 0.00 0.00 0.00 4.17
732 733 0.820871 TGAACCAAACCAGCAACCAC 59.179 50.000 0.00 0.00 0.00 4.16
733 734 1.110442 CTGAACCAAACCAGCAACCA 58.890 50.000 0.00 0.00 0.00 3.67
734 735 1.111277 ACTGAACCAAACCAGCAACC 58.889 50.000 0.00 0.00 33.90 3.77
735 736 2.959507 AACTGAACCAAACCAGCAAC 57.040 45.000 0.00 0.00 33.90 4.17
736 737 5.407407 TTTTAACTGAACCAAACCAGCAA 57.593 34.783 0.00 0.00 33.90 3.91
737 738 5.407407 TTTTTAACTGAACCAAACCAGCA 57.593 34.783 0.00 0.00 33.90 4.41
758 759 2.874086 CCCGAACGAACCACTAGTTTTT 59.126 45.455 0.00 0.00 39.40 1.94
759 760 2.486918 CCCGAACGAACCACTAGTTTT 58.513 47.619 0.00 0.00 39.40 2.43
760 761 1.875157 GCCCGAACGAACCACTAGTTT 60.875 52.381 0.00 0.00 39.40 2.66
761 762 0.320160 GCCCGAACGAACCACTAGTT 60.320 55.000 0.00 0.00 43.07 2.24
762 763 1.183676 AGCCCGAACGAACCACTAGT 61.184 55.000 0.00 0.00 0.00 2.57
763 764 0.736325 CAGCCCGAACGAACCACTAG 60.736 60.000 0.00 0.00 0.00 2.57
764 765 1.290955 CAGCCCGAACGAACCACTA 59.709 57.895 0.00 0.00 0.00 2.74
765 766 2.030562 CAGCCCGAACGAACCACT 59.969 61.111 0.00 0.00 0.00 4.00
766 767 3.047877 CCAGCCCGAACGAACCAC 61.048 66.667 0.00 0.00 0.00 4.16
767 768 4.323477 CCCAGCCCGAACGAACCA 62.323 66.667 0.00 0.00 0.00 3.67
768 769 4.324991 ACCCAGCCCGAACGAACC 62.325 66.667 0.00 0.00 0.00 3.62
769 770 2.741211 GACCCAGCCCGAACGAAC 60.741 66.667 0.00 0.00 0.00 3.95
770 771 3.234630 CTGACCCAGCCCGAACGAA 62.235 63.158 0.00 0.00 0.00 3.85
771 772 3.691342 CTGACCCAGCCCGAACGA 61.691 66.667 0.00 0.00 0.00 3.85
772 773 2.642254 TACTGACCCAGCCCGAACG 61.642 63.158 0.00 0.00 34.37 3.95
773 774 1.079336 GTACTGACCCAGCCCGAAC 60.079 63.158 0.00 0.00 34.37 3.95
774 775 2.642254 CGTACTGACCCAGCCCGAA 61.642 63.158 0.00 0.00 34.37 4.30
775 776 3.066190 CGTACTGACCCAGCCCGA 61.066 66.667 0.00 0.00 34.37 5.14
776 777 4.814294 GCGTACTGACCCAGCCCG 62.814 72.222 0.00 0.00 34.37 6.13
777 778 4.468689 GGCGTACTGACCCAGCCC 62.469 72.222 0.00 0.00 41.81 5.19
812 813 4.025401 CTGTTTGGTCCGTGGCGC 62.025 66.667 0.00 0.00 0.00 6.53
813 814 2.280524 TCTGTTTGGTCCGTGGCG 60.281 61.111 0.00 0.00 0.00 5.69
814 815 2.604174 CGTCTGTTTGGTCCGTGGC 61.604 63.158 0.00 0.00 0.00 5.01
815 816 1.959226 CCGTCTGTTTGGTCCGTGG 60.959 63.158 0.00 0.00 0.00 4.94
816 817 0.320421 ATCCGTCTGTTTGGTCCGTG 60.320 55.000 0.00 0.00 0.00 4.94
817 818 0.037605 GATCCGTCTGTTTGGTCCGT 60.038 55.000 0.00 0.00 0.00 4.69
818 819 1.076533 CGATCCGTCTGTTTGGTCCG 61.077 60.000 0.00 0.00 0.00 4.79
819 820 0.245539 TCGATCCGTCTGTTTGGTCC 59.754 55.000 0.00 0.00 0.00 4.46
820 821 1.630148 CTCGATCCGTCTGTTTGGTC 58.370 55.000 0.00 0.00 0.00 4.02
821 822 0.389948 GCTCGATCCGTCTGTTTGGT 60.390 55.000 0.00 0.00 0.00 3.67
822 823 1.084370 GGCTCGATCCGTCTGTTTGG 61.084 60.000 0.00 0.00 0.00 3.28
823 824 0.389817 TGGCTCGATCCGTCTGTTTG 60.390 55.000 0.03 0.00 0.00 2.93
824 825 0.389948 GTGGCTCGATCCGTCTGTTT 60.390 55.000 0.03 0.00 0.00 2.83
825 826 1.215647 GTGGCTCGATCCGTCTGTT 59.784 57.895 0.03 0.00 0.00 3.16
826 827 2.711922 GGTGGCTCGATCCGTCTGT 61.712 63.158 0.03 0.00 0.00 3.41
827 828 2.105128 GGTGGCTCGATCCGTCTG 59.895 66.667 0.03 0.00 0.00 3.51
828 829 3.518998 CGGTGGCTCGATCCGTCT 61.519 66.667 0.03 0.00 39.51 4.18
832 833 2.105128 CTGACGGTGGCTCGATCC 59.895 66.667 0.00 0.00 0.00 3.36
833 834 1.226717 GACTGACGGTGGCTCGATC 60.227 63.158 7.70 0.00 0.00 3.69
834 835 2.711922 GGACTGACGGTGGCTCGAT 61.712 63.158 7.70 0.00 0.00 3.59
835 836 3.371063 GGACTGACGGTGGCTCGA 61.371 66.667 7.70 0.00 0.00 4.04
836 837 3.680786 TGGACTGACGGTGGCTCG 61.681 66.667 0.00 0.00 0.00 5.03
837 838 2.048127 GTGGACTGACGGTGGCTC 60.048 66.667 0.00 0.00 0.00 4.70
838 839 3.626924 GGTGGACTGACGGTGGCT 61.627 66.667 0.00 0.00 0.00 4.75
845 846 2.733593 GTCGTGCGGTGGACTGAC 60.734 66.667 0.00 0.02 0.00 3.51
851 852 2.279851 TGTTGAGTCGTGCGGTGG 60.280 61.111 0.00 0.00 0.00 4.61
853 854 2.661866 GCTGTTGAGTCGTGCGGT 60.662 61.111 0.00 0.00 0.00 5.68
858 859 0.249489 GTGAGTGGCTGTTGAGTCGT 60.249 55.000 0.00 0.00 0.00 4.34
860 861 0.603975 GGGTGAGTGGCTGTTGAGTC 60.604 60.000 0.00 0.00 0.00 3.36
865 866 3.953775 CGGGGGTGAGTGGCTGTT 61.954 66.667 0.00 0.00 0.00 3.16
892 893 1.032114 CCTTGGTCGATTTGGGGAGC 61.032 60.000 0.00 0.00 0.00 4.70
899 900 1.305930 GCTTCGGCCTTGGTCGATTT 61.306 55.000 17.24 0.00 35.25 2.17
1124 1129 2.292587 GGAGAAAAGGAGAGGAGAGGGA 60.293 54.545 0.00 0.00 0.00 4.20
1365 1545 0.760567 CGTCATCCCCATCCTCCTCA 60.761 60.000 0.00 0.00 0.00 3.86
1469 1665 2.237643 TGGTAGGAATACCACACGCAAT 59.762 45.455 3.01 0.00 44.56 3.56
1470 1666 1.624312 TGGTAGGAATACCACACGCAA 59.376 47.619 3.01 0.00 44.56 4.85
1614 1810 3.149005 TCCCCAGTAAACATGTGGAAC 57.851 47.619 0.00 0.00 32.60 3.62
1618 4247 6.659242 AGAACTATTTCCCCAGTAAACATGTG 59.341 38.462 0.00 0.00 31.28 3.21
1620 4249 7.703058 AAGAACTATTTCCCCAGTAAACATG 57.297 36.000 0.00 0.00 31.28 3.21
1624 4253 9.070179 GTTTGTAAGAACTATTTCCCCAGTAAA 57.930 33.333 0.00 0.00 31.28 2.01
1632 4261 6.008331 ACCCTGGTTTGTAAGAACTATTTCC 58.992 40.000 0.00 0.00 31.28 3.13
1634 4263 7.519927 TGTACCCTGGTTTGTAAGAACTATTT 58.480 34.615 0.00 0.00 0.00 1.40
1694 5967 5.437289 TTCTGCACTCCTATTGTGTTTTG 57.563 39.130 0.00 0.00 37.70 2.44
1701 5974 5.798125 TCTCCTATTCTGCACTCCTATTG 57.202 43.478 0.00 0.00 0.00 1.90
1741 6014 0.902531 GCTGGCCAAGGTAGTCACTA 59.097 55.000 7.01 0.00 0.00 2.74
1742 6015 1.679898 GCTGGCCAAGGTAGTCACT 59.320 57.895 7.01 0.00 0.00 3.41
1915 6188 4.325472 GCAGCTGATTGCAATCACTTTAAC 59.675 41.667 33.08 18.47 45.94 2.01
1937 6210 4.606961 TGAAGACAAACGAAAATCTTGGC 58.393 39.130 0.00 0.00 31.58 4.52
1986 6259 4.643463 TCAACCAGCGGACATTTTTACTA 58.357 39.130 1.50 0.00 0.00 1.82
2049 6322 2.758979 CTGGAATGCAGCAGAAGGAAAT 59.241 45.455 0.00 0.00 0.00 2.17
2093 6368 1.600107 CCCATTTGGCTGCAGCAAT 59.400 52.632 37.63 26.48 44.36 3.56
2216 6491 5.181690 TGAACAGTAACATTTGGAACTGC 57.818 39.130 12.00 0.00 42.44 4.40
2222 6497 5.633830 AGCTCATGAACAGTAACATTTGG 57.366 39.130 0.00 0.00 0.00 3.28
2360 6663 1.893062 TGTCTGATCAGGCGGACAG 59.107 57.895 21.79 9.62 46.28 3.51
2369 6672 3.877508 ACTCGACGTATCATGTCTGATCA 59.122 43.478 0.00 0.00 41.29 2.92
2378 6681 6.150318 GGATAATTCACACTCGACGTATCAT 58.850 40.000 0.00 0.00 0.00 2.45
2384 6687 5.043903 AGAATGGATAATTCACACTCGACG 58.956 41.667 1.30 0.00 46.21 5.12
2758 7065 5.156355 CCAAGTTTGTCGATCAATTCAAGG 58.844 41.667 0.00 0.00 35.84 3.61
2759 7066 5.762045 ACCAAGTTTGTCGATCAATTCAAG 58.238 37.500 0.00 0.00 35.84 3.02
2760 7067 5.278266 GGACCAAGTTTGTCGATCAATTCAA 60.278 40.000 1.33 0.00 35.84 2.69
2785 7092 3.321497 GAGCTGACTACTTGGTCACTTG 58.679 50.000 0.00 0.00 40.72 3.16
2797 7104 3.269906 AGGAGGACTAAAGGAGCTGACTA 59.730 47.826 0.00 0.00 0.00 2.59
2799 7106 2.462723 AGGAGGACTAAAGGAGCTGAC 58.537 52.381 0.00 0.00 0.00 3.51
2815 7122 8.722480 ATTGTTTCTTTCAAAAGGAAAAGGAG 57.278 30.769 0.00 0.00 44.52 3.69
2978 7291 3.363970 CGGTTCTCCTCAAATGTTTGACG 60.364 47.826 4.16 1.86 41.88 4.35
3070 10178 3.706373 GACCCTTCGCTCTGCCCA 61.706 66.667 0.00 0.00 0.00 5.36
3074 10182 1.301677 GCCTTTGACCCTTCGCTCTG 61.302 60.000 0.00 0.00 0.00 3.35
3080 10188 0.972471 CCCATGGCCTTTGACCCTTC 60.972 60.000 6.09 0.00 0.00 3.46
3106 10214 4.082523 AGCGTGTCGACCATGGGG 62.083 66.667 18.09 7.78 41.29 4.96
3107 10215 2.509336 GAGCGTGTCGACCATGGG 60.509 66.667 18.09 0.00 0.00 4.00
3202 10310 0.615331 GCATGAAGACTCCACCTCCA 59.385 55.000 0.00 0.00 0.00 3.86
3205 10313 1.194781 ACGGCATGAAGACTCCACCT 61.195 55.000 0.00 0.00 0.00 4.00
3236 10344 0.322277 ACCATGCTCTTGCTCAGTGG 60.322 55.000 0.00 0.00 40.48 4.00
3246 10354 1.078848 GTCGCTTCCACCATGCTCT 60.079 57.895 0.00 0.00 0.00 4.09
3269 10377 0.692476 TCACCATTCACCAGTGAGGG 59.308 55.000 15.22 15.22 43.89 4.30
3303 10413 0.616111 ATGGCCACTCTCGACTTCCT 60.616 55.000 8.16 0.00 0.00 3.36
3343 10457 2.046988 CAGCACATCCAGCCGTCA 60.047 61.111 0.00 0.00 0.00 4.35
3360 10474 9.915629 CTGTAAGATCAAGTAACCATATACTCC 57.084 37.037 0.00 0.00 32.92 3.85
3451 10565 4.345257 TCAAGGGGATTAAGAGAGAATCGG 59.655 45.833 0.00 0.00 42.67 4.18
3453 10567 8.759481 AAAATCAAGGGGATTAAGAGAGAATC 57.241 34.615 0.00 0.00 45.46 2.52
3689 10889 5.952526 AAACCAAGTGGGAAAATACTACG 57.047 39.130 1.69 0.00 41.15 3.51
3690 10890 7.046292 ACAAAACCAAGTGGGAAAATACTAC 57.954 36.000 1.69 0.00 41.15 2.73
3691 10891 8.631797 GTTACAAAACCAAGTGGGAAAATACTA 58.368 33.333 1.69 0.00 41.15 1.82
3692 10892 7.124448 TGTTACAAAACCAAGTGGGAAAATACT 59.876 33.333 1.69 0.00 41.15 2.12
3701 10901 4.862018 CAGTTGTGTTACAAAACCAAGTGG 59.138 41.667 14.14 0.00 40.15 4.00
3717 10917 2.099592 ACAGCCAACATGTTCAGTTGTG 59.900 45.455 20.23 10.77 43.61 3.33
3865 11187 2.036733 ACATGCATGAGCTTTGTTGCTT 59.963 40.909 32.75 2.54 44.17 3.91
3891 11221 5.389520 TCCCATGTAAGAATTGGACAACAA 58.610 37.500 0.00 0.00 44.54 2.83
3892 11222 4.991776 TCCCATGTAAGAATTGGACAACA 58.008 39.130 0.00 0.00 31.94 3.33
3893 11223 6.530019 AATCCCATGTAAGAATTGGACAAC 57.470 37.500 0.00 0.00 31.94 3.32
3894 11224 6.070881 CCAAATCCCATGTAAGAATTGGACAA 60.071 38.462 14.77 0.00 43.05 3.18
3895 11225 5.421693 CCAAATCCCATGTAAGAATTGGACA 59.578 40.000 14.77 0.00 43.05 4.02
3896 11226 5.422012 ACCAAATCCCATGTAAGAATTGGAC 59.578 40.000 21.99 0.00 43.05 4.02
3897 11227 5.588845 ACCAAATCCCATGTAAGAATTGGA 58.411 37.500 21.99 8.08 43.05 3.53
3986 11316 2.549754 CCTCACTGTCAACCATCACAAC 59.450 50.000 0.00 0.00 0.00 3.32
4018 11348 1.060713 CAACGGCTAACACAGTCTCG 58.939 55.000 0.00 0.00 0.00 4.04
4177 11513 4.086227 CGACGTGCAAGATATTCTTCGTAC 60.086 45.833 6.65 0.00 35.52 3.67
4316 11654 2.094286 TGGCTACGCATTGAAATTTGGG 60.094 45.455 0.00 0.00 0.00 4.12
4326 11664 3.056107 TGAACTTACTCTGGCTACGCATT 60.056 43.478 0.00 0.00 0.00 3.56
4362 11707 6.757897 TTATTCGACCAAAAGCATGAGAAT 57.242 33.333 0.00 0.00 0.00 2.40
4408 11753 5.570234 AACGTTTGTGTTCTTAACCATGT 57.430 34.783 0.00 0.00 0.00 3.21
4464 11809 5.316167 TCAAACTCAAGTGAATGCCATACT 58.684 37.500 0.00 0.00 0.00 2.12
4478 11823 7.873719 TTCCAGAACATAACTTCAAACTCAA 57.126 32.000 0.00 0.00 0.00 3.02
4510 11869 3.823873 ACGATGGTTAGCATTTCCAACAA 59.176 39.130 0.00 0.00 34.80 2.83
4558 11921 1.078708 TTCCTTTCGCCGTGGATCC 60.079 57.895 4.20 4.20 0.00 3.36
4654 12019 1.204941 ACTAGAGCCACGGTGTCATTC 59.795 52.381 7.45 0.00 0.00 2.67
4716 12104 4.415150 CATGGGAGCGGCACCTGT 62.415 66.667 16.03 2.64 0.00 4.00
4740 12128 8.052748 AGAAGCACCCATATATGTTGTTCTTAA 58.947 33.333 11.73 0.00 0.00 1.85
4769 12157 9.850628 CGCTAGCACATTAGTACCTAAATATAA 57.149 33.333 16.45 0.00 29.35 0.98
4811 12199 5.172934 AGAAGGTCGCGATTTATACAAACA 58.827 37.500 14.06 0.00 0.00 2.83
4866 12255 5.772672 AGCATAGATAAACCACAAACCACAA 59.227 36.000 0.00 0.00 0.00 3.33
4875 12264 6.608610 ACGTTTTCAAGCATAGATAAACCAC 58.391 36.000 0.00 0.00 0.00 4.16
4899 12288 9.938280 TGTCTTGAAAAAGTAATAGCTAGCTAA 57.062 29.630 27.47 10.30 31.73 3.09
4909 12298 8.806146 AGCCACATTATGTCTTGAAAAAGTAAT 58.194 29.630 0.00 0.00 0.00 1.89
4910 12299 8.177119 AGCCACATTATGTCTTGAAAAAGTAA 57.823 30.769 0.00 0.00 0.00 2.24
4913 12302 6.680810 TGAGCCACATTATGTCTTGAAAAAG 58.319 36.000 0.00 0.00 0.00 2.27
4921 12310 5.126061 GGAAACATTGAGCCACATTATGTCT 59.874 40.000 0.00 0.00 31.30 3.41
4924 12313 5.327616 TGGAAACATTGAGCCACATTATG 57.672 39.130 0.00 0.00 33.40 1.90
4961 12350 1.241315 TAGAAAACCTGCGGCCAAGC 61.241 55.000 2.24 0.00 37.71 4.01
4963 12352 1.693627 TTTAGAAAACCTGCGGCCAA 58.306 45.000 2.24 0.00 0.00 4.52
4983 12372 7.661847 AGTGTGTTCTAATTTCCGAAATCTTCT 59.338 33.333 6.82 0.00 0.00 2.85
4992 12381 5.682943 TTTCCAGTGTGTTCTAATTTCCG 57.317 39.130 0.00 0.00 0.00 4.30
4995 12384 7.433680 GGACAATTTCCAGTGTGTTCTAATTT 58.566 34.615 0.00 0.00 45.10 1.82
4996 12385 6.981722 GGACAATTTCCAGTGTGTTCTAATT 58.018 36.000 0.00 0.00 45.10 1.40
4997 12386 6.575162 GGACAATTTCCAGTGTGTTCTAAT 57.425 37.500 0.00 0.00 45.10 1.73
5042 12445 5.063880 ACCTTAGCGTCTCACATTCTTTTT 58.936 37.500 0.00 0.00 0.00 1.94
5045 12448 3.258372 TGACCTTAGCGTCTCACATTCTT 59.742 43.478 3.36 0.00 33.70 2.52
5047 12450 3.232213 TGACCTTAGCGTCTCACATTC 57.768 47.619 3.36 0.00 33.70 2.67
5048 12451 3.678056 TTGACCTTAGCGTCTCACATT 57.322 42.857 3.36 0.00 33.70 2.71
5049 12452 3.678056 TTTGACCTTAGCGTCTCACAT 57.322 42.857 3.36 0.00 33.70 3.21
5050 12453 3.678056 ATTTGACCTTAGCGTCTCACA 57.322 42.857 3.36 0.00 33.70 3.58
5051 12454 5.163884 GGTTAATTTGACCTTAGCGTCTCAC 60.164 44.000 3.19 0.00 34.27 3.51
5052 12455 4.933400 GGTTAATTTGACCTTAGCGTCTCA 59.067 41.667 3.19 0.00 34.27 3.27
5053 12456 4.331992 GGGTTAATTTGACCTTAGCGTCTC 59.668 45.833 9.91 0.00 37.34 3.36
5055 12458 4.004982 TGGGTTAATTTGACCTTAGCGTC 58.995 43.478 9.91 0.00 37.34 5.19
5056 12459 4.007659 CTGGGTTAATTTGACCTTAGCGT 58.992 43.478 9.91 0.00 37.34 5.07
5057 12460 3.181500 GCTGGGTTAATTTGACCTTAGCG 60.181 47.826 17.42 3.90 37.48 4.26
5058 12461 3.181500 CGCTGGGTTAATTTGACCTTAGC 60.181 47.826 20.05 20.05 40.55 3.09
5059 12462 4.007659 ACGCTGGGTTAATTTGACCTTAG 58.992 43.478 9.91 9.56 37.34 2.18
5060 12463 3.754323 CACGCTGGGTTAATTTGACCTTA 59.246 43.478 9.91 0.31 37.34 2.69
5061 12464 2.556622 CACGCTGGGTTAATTTGACCTT 59.443 45.455 9.91 0.00 37.34 3.50
5062 12465 2.159382 CACGCTGGGTTAATTTGACCT 58.841 47.619 9.91 0.00 37.34 3.85
5064 12467 1.402325 GCCACGCTGGGTTAATTTGAC 60.402 52.381 0.00 0.00 38.19 3.18
5066 12469 0.600557 TGCCACGCTGGGTTAATTTG 59.399 50.000 0.00 0.00 38.19 2.32
5074 12477 2.568090 GTTGAATGCCACGCTGGG 59.432 61.111 6.23 0.00 38.19 4.45
5085 12488 4.640647 GCTCTAGGGAATTTTCGGTTGAAT 59.359 41.667 0.00 0.00 33.20 2.57
5088 12491 2.683362 GGCTCTAGGGAATTTTCGGTTG 59.317 50.000 0.00 0.00 0.00 3.77
5092 12495 6.693315 TTTTATGGCTCTAGGGAATTTTCG 57.307 37.500 0.00 0.00 0.00 3.46
5098 12501 4.227300 TGCTCTTTTTATGGCTCTAGGGAA 59.773 41.667 0.00 0.00 0.00 3.97
5107 12510 2.610433 GCCAACTGCTCTTTTTATGGC 58.390 47.619 0.00 0.00 44.24 4.40
5123 12528 2.165167 CTCTTTTGCATCTCAGGCCAA 58.835 47.619 5.01 0.00 0.00 4.52
5127 12532 4.614535 CGTTTTCCTCTTTTGCATCTCAGG 60.615 45.833 0.00 0.00 0.00 3.86
5128 12533 4.023707 ACGTTTTCCTCTTTTGCATCTCAG 60.024 41.667 0.00 0.00 0.00 3.35
5139 12544 2.096248 TGTGCCAAACGTTTTCCTCTT 58.904 42.857 11.66 0.00 0.00 2.85
5141 12546 2.570442 TTGTGCCAAACGTTTTCCTC 57.430 45.000 11.66 6.78 0.00 3.71
5143 12548 1.260297 GCATTGTGCCAAACGTTTTCC 59.740 47.619 11.66 5.78 37.42 3.13
5165 12570 6.018180 CGTCCTAATTACTGTTATTCTTGCCC 60.018 42.308 0.00 0.00 0.00 5.36
5166 12571 6.511282 GCGTCCTAATTACTGTTATTCTTGCC 60.511 42.308 0.00 0.00 0.00 4.52
5167 12572 6.419771 GCGTCCTAATTACTGTTATTCTTGC 58.580 40.000 0.00 0.00 0.00 4.01
5168 12573 6.018180 GGGCGTCCTAATTACTGTTATTCTTG 60.018 42.308 0.00 0.00 0.00 3.02
5169 12574 6.053650 GGGCGTCCTAATTACTGTTATTCTT 58.946 40.000 0.00 0.00 0.00 2.52
5170 12575 5.608449 GGGCGTCCTAATTACTGTTATTCT 58.392 41.667 0.00 0.00 0.00 2.40
5171 12576 4.446719 CGGGCGTCCTAATTACTGTTATTC 59.553 45.833 3.66 0.00 0.00 1.75
5172 12577 4.141869 ACGGGCGTCCTAATTACTGTTATT 60.142 41.667 3.66 0.00 0.00 1.40
5173 12578 3.385755 ACGGGCGTCCTAATTACTGTTAT 59.614 43.478 3.66 0.00 0.00 1.89
5174 12579 2.760092 ACGGGCGTCCTAATTACTGTTA 59.240 45.455 3.66 0.00 0.00 2.41
5175 12580 1.551883 ACGGGCGTCCTAATTACTGTT 59.448 47.619 3.66 0.00 0.00 3.16
5176 12581 1.188863 ACGGGCGTCCTAATTACTGT 58.811 50.000 3.66 0.00 0.00 3.55
5177 12582 2.304751 AACGGGCGTCCTAATTACTG 57.695 50.000 3.66 0.00 0.00 2.74
5178 12583 2.234414 TCAAACGGGCGTCCTAATTACT 59.766 45.455 3.66 0.00 0.00 2.24
5179 12584 2.620242 TCAAACGGGCGTCCTAATTAC 58.380 47.619 3.66 0.00 0.00 1.89
5180 12585 3.002102 GTTCAAACGGGCGTCCTAATTA 58.998 45.455 3.66 0.00 0.00 1.40
5181 12586 1.808343 GTTCAAACGGGCGTCCTAATT 59.192 47.619 3.66 0.00 0.00 1.40
5182 12587 1.270947 TGTTCAAACGGGCGTCCTAAT 60.271 47.619 3.66 0.00 0.00 1.73
5183 12588 0.106335 TGTTCAAACGGGCGTCCTAA 59.894 50.000 3.66 0.00 0.00 2.69
5184 12589 0.322322 ATGTTCAAACGGGCGTCCTA 59.678 50.000 3.66 0.00 0.00 2.94
5185 12590 1.072505 ATGTTCAAACGGGCGTCCT 59.927 52.632 3.66 0.00 0.00 3.85
5186 12591 1.209127 CATGTTCAAACGGGCGTCC 59.791 57.895 0.00 0.00 0.00 4.79
5187 12592 0.589223 TTCATGTTCAAACGGGCGTC 59.411 50.000 0.00 0.00 0.00 5.19
5188 12593 1.243902 ATTCATGTTCAAACGGGCGT 58.756 45.000 0.00 0.00 0.00 5.68
5189 12594 1.984990 CAATTCATGTTCAAACGGGCG 59.015 47.619 0.00 0.00 0.00 6.13
5190 12595 3.296322 TCAATTCATGTTCAAACGGGC 57.704 42.857 0.00 0.00 0.00 6.13
5191 12596 5.058149 TGATCAATTCATGTTCAAACGGG 57.942 39.130 0.00 0.00 35.36 5.28
5196 12601 8.729756 ACTACGATTTGATCAATTCATGTTCAA 58.270 29.630 23.24 2.13 42.93 2.69
5197 12602 8.267620 ACTACGATTTGATCAATTCATGTTCA 57.732 30.769 23.24 2.78 36.26 3.18
5198 12603 9.559958 AAACTACGATTTGATCAATTCATGTTC 57.440 29.630 23.24 7.66 33.34 3.18
5203 12608 8.181573 GCCTTAAACTACGATTTGATCAATTCA 58.818 33.333 23.24 6.05 0.00 2.57
5204 12609 8.398665 AGCCTTAAACTACGATTTGATCAATTC 58.601 33.333 16.84 16.84 0.00 2.17
5205 12610 8.281212 AGCCTTAAACTACGATTTGATCAATT 57.719 30.769 9.40 5.69 0.00 2.32
5206 12611 7.865706 AGCCTTAAACTACGATTTGATCAAT 57.134 32.000 9.40 0.00 0.00 2.57
5207 12612 7.303634 GAGCCTTAAACTACGATTTGATCAA 57.696 36.000 3.38 3.38 0.00 2.57
5208 12613 6.903883 GAGCCTTAAACTACGATTTGATCA 57.096 37.500 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.