Multiple sequence alignment - TraesCS7B01G412600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G412600 chr7B 100.000 2222 0 0 1 2222 680272353 680274574 0.000000e+00 4104
1 TraesCS7B01G412600 chr7B 93.600 125 8 0 236 360 553438211 553438087 1.050000e-43 187
2 TraesCS7B01G412600 chr7A 93.729 1499 57 18 739 2222 692940420 692941896 0.000000e+00 2213
3 TraesCS7B01G412600 chr7A 90.649 385 32 2 353 737 692934937 692935317 1.970000e-140 508
4 TraesCS7B01G412600 chr7D 88.211 1230 73 23 375 1560 601231015 601229814 0.000000e+00 1402
5 TraesCS7B01G412600 chr7D 86.842 570 42 14 1685 2222 601229134 601228566 6.790000e-170 606
6 TraesCS7B01G412600 chr7D 97.778 90 2 0 273 362 564074925 564074836 2.950000e-34 156
7 TraesCS7B01G412600 chr1B 98.438 128 2 0 236 363 345307975 345308102 2.220000e-55 226
8 TraesCS7B01G412600 chr3D 95.312 128 6 0 236 363 5679356 5679229 1.040000e-48 204
9 TraesCS7B01G412600 chr3D 94.400 125 7 0 236 360 603689101 603689225 2.250000e-45 193
10 TraesCS7B01G412600 chr5A 94.309 123 7 0 238 360 6488376 6488254 2.910000e-44 189
11 TraesCS7B01G412600 chr2B 91.473 129 10 1 236 364 50222731 50222604 2.270000e-40 176
12 TraesCS7B01G412600 chr2B 85.093 161 10 5 234 383 560896773 560896930 3.820000e-33 152
13 TraesCS7B01G412600 chr5D 95.918 98 2 2 264 360 396236421 396236517 8.210000e-35 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G412600 chr7B 680272353 680274574 2221 False 4104 4104 100.0000 1 2222 1 chr7B.!!$F1 2221
1 TraesCS7B01G412600 chr7A 692940420 692941896 1476 False 2213 2213 93.7290 739 2222 1 chr7A.!!$F2 1483
2 TraesCS7B01G412600 chr7D 601228566 601231015 2449 True 1004 1402 87.5265 375 2222 2 chr7D.!!$R2 1847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 364 0.037734 ACCGAACAAAGCCTAAGGGG 59.962 55.0 0.0 0.0 38.36 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1232 1271 1.345176 GAAAATCGAGCCGCACGAG 59.655 57.895 17.67 0.0 42.81 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.172934 AGCATGCAAATTAACTTGTGATGG 58.827 37.500 21.98 0.00 0.00 3.51
24 25 5.047164 AGCATGCAAATTAACTTGTGATGGA 60.047 36.000 21.98 0.00 0.00 3.41
25 26 5.062558 GCATGCAAATTAACTTGTGATGGAC 59.937 40.000 14.21 0.00 0.00 4.02
26 27 5.781210 TGCAAATTAACTTGTGATGGACA 57.219 34.783 0.00 0.00 0.00 4.02
27 28 6.154203 TGCAAATTAACTTGTGATGGACAA 57.846 33.333 0.00 0.00 42.55 3.18
28 29 6.577103 TGCAAATTAACTTGTGATGGACAAA 58.423 32.000 0.00 0.00 44.14 2.83
29 30 7.215789 TGCAAATTAACTTGTGATGGACAAAT 58.784 30.769 0.00 0.00 44.14 2.32
30 31 7.714377 TGCAAATTAACTTGTGATGGACAAATT 59.286 29.630 0.00 0.00 44.14 1.82
31 32 8.011106 GCAAATTAACTTGTGATGGACAAATTG 58.989 33.333 0.00 0.00 44.14 2.32
32 33 7.656707 AATTAACTTGTGATGGACAAATTGC 57.343 32.000 0.00 0.00 44.14 3.56
33 34 4.942761 AACTTGTGATGGACAAATTGCT 57.057 36.364 0.00 0.00 44.14 3.91
34 35 7.517614 TTAACTTGTGATGGACAAATTGCTA 57.482 32.000 0.00 0.00 44.14 3.49
35 36 6.594788 AACTTGTGATGGACAAATTGCTAT 57.405 33.333 0.00 0.00 44.14 2.97
36 37 6.594788 ACTTGTGATGGACAAATTGCTATT 57.405 33.333 0.00 0.00 44.14 1.73
37 38 6.996509 ACTTGTGATGGACAAATTGCTATTT 58.003 32.000 0.00 0.00 44.14 1.40
51 52 9.218440 CAAATTGCTATTTGTTCCCATAAAACT 57.782 29.630 20.98 0.00 43.60 2.66
52 53 9.791801 AAATTGCTATTTGTTCCCATAAAACTT 57.208 25.926 5.29 0.00 32.79 2.66
54 55 9.869757 ATTGCTATTTGTTCCCATAAAACTTAC 57.130 29.630 0.00 0.00 0.00 2.34
55 56 7.531716 TGCTATTTGTTCCCATAAAACTTACG 58.468 34.615 0.00 0.00 0.00 3.18
56 57 6.970613 GCTATTTGTTCCCATAAAACTTACGG 59.029 38.462 0.00 0.00 0.00 4.02
57 58 5.708877 TTTGTTCCCATAAAACTTACGGG 57.291 39.130 0.00 0.00 38.34 5.28
58 59 4.637387 TGTTCCCATAAAACTTACGGGA 57.363 40.909 0.00 0.00 44.30 5.14
87 88 5.664294 AAAAACTGGTTTTAGGGAACGTT 57.336 34.783 0.00 0.00 41.45 3.99
88 89 5.664294 AAAACTGGTTTTAGGGAACGTTT 57.336 34.783 0.46 0.00 40.61 3.60
89 90 5.664294 AAACTGGTTTTAGGGAACGTTTT 57.336 34.783 0.46 0.00 0.00 2.43
90 91 5.664294 AACTGGTTTTAGGGAACGTTTTT 57.336 34.783 0.46 0.00 0.00 1.94
111 112 7.546778 TTTTTAAGGAAATTGTTGGAGTTGC 57.453 32.000 0.00 0.00 0.00 4.17
112 113 6.478512 TTTAAGGAAATTGTTGGAGTTGCT 57.521 33.333 0.00 0.00 0.00 3.91
113 114 4.590850 AAGGAAATTGTTGGAGTTGCTC 57.409 40.909 0.00 0.00 0.00 4.26
114 115 3.837355 AGGAAATTGTTGGAGTTGCTCT 58.163 40.909 0.00 0.00 0.00 4.09
115 116 4.985538 AGGAAATTGTTGGAGTTGCTCTA 58.014 39.130 0.00 0.00 0.00 2.43
116 117 5.385198 AGGAAATTGTTGGAGTTGCTCTAA 58.615 37.500 0.00 0.00 0.00 2.10
121 122 3.879932 GTTGGAGTTGCTCTAACACAC 57.120 47.619 16.75 0.00 46.43 3.82
122 123 3.467803 GTTGGAGTTGCTCTAACACACT 58.532 45.455 16.75 0.00 46.43 3.55
123 124 4.628074 GTTGGAGTTGCTCTAACACACTA 58.372 43.478 16.75 0.00 46.43 2.74
124 125 4.948341 TGGAGTTGCTCTAACACACTAA 57.052 40.909 0.00 0.00 41.88 2.24
125 126 4.628074 TGGAGTTGCTCTAACACACTAAC 58.372 43.478 0.00 0.00 41.88 2.34
126 127 4.344102 TGGAGTTGCTCTAACACACTAACT 59.656 41.667 0.00 0.00 41.88 2.24
127 128 4.924462 GGAGTTGCTCTAACACACTAACTC 59.076 45.833 0.00 0.00 41.88 3.01
128 129 4.884247 AGTTGCTCTAACACACTAACTCC 58.116 43.478 0.00 0.00 41.88 3.85
129 130 4.344102 AGTTGCTCTAACACACTAACTCCA 59.656 41.667 0.00 0.00 41.88 3.86
130 131 4.948341 TGCTCTAACACACTAACTCCAA 57.052 40.909 0.00 0.00 0.00 3.53
131 132 5.284861 TGCTCTAACACACTAACTCCAAA 57.715 39.130 0.00 0.00 0.00 3.28
132 133 5.865085 TGCTCTAACACACTAACTCCAAAT 58.135 37.500 0.00 0.00 0.00 2.32
133 134 6.999950 TGCTCTAACACACTAACTCCAAATA 58.000 36.000 0.00 0.00 0.00 1.40
134 135 7.097192 TGCTCTAACACACTAACTCCAAATAG 58.903 38.462 0.00 0.00 0.00 1.73
135 136 7.039293 TGCTCTAACACACTAACTCCAAATAGA 60.039 37.037 0.00 0.00 0.00 1.98
136 137 7.982354 GCTCTAACACACTAACTCCAAATAGAT 59.018 37.037 0.00 0.00 0.00 1.98
137 138 9.522804 CTCTAACACACTAACTCCAAATAGATC 57.477 37.037 0.00 0.00 0.00 2.75
138 139 9.256228 TCTAACACACTAACTCCAAATAGATCT 57.744 33.333 0.00 0.00 0.00 2.75
142 143 9.823647 ACACACTAACTCCAAATAGATCTATTG 57.176 33.333 25.16 18.52 36.04 1.90
143 144 9.265901 CACACTAACTCCAAATAGATCTATTGG 57.734 37.037 25.16 24.50 36.04 3.16
144 145 7.934120 ACACTAACTCCAAATAGATCTATTGGC 59.066 37.037 25.16 0.00 36.04 4.52
145 146 7.933577 CACTAACTCCAAATAGATCTATTGGCA 59.066 37.037 25.16 10.62 36.04 4.92
146 147 8.664079 ACTAACTCCAAATAGATCTATTGGCAT 58.336 33.333 25.16 17.77 36.04 4.40
147 148 7.756395 AACTCCAAATAGATCTATTGGCATG 57.244 36.000 25.16 19.10 36.04 4.06
148 149 6.845908 ACTCCAAATAGATCTATTGGCATGT 58.154 36.000 25.16 20.40 36.04 3.21
149 150 7.977818 ACTCCAAATAGATCTATTGGCATGTA 58.022 34.615 25.16 8.81 36.04 2.29
150 151 8.099537 ACTCCAAATAGATCTATTGGCATGTAG 58.900 37.037 25.16 17.91 36.04 2.74
151 152 8.206126 TCCAAATAGATCTATTGGCATGTAGA 57.794 34.615 25.16 12.65 36.04 2.59
152 153 8.316946 TCCAAATAGATCTATTGGCATGTAGAG 58.683 37.037 25.16 9.60 36.04 2.43
153 154 8.316946 CCAAATAGATCTATTGGCATGTAGAGA 58.683 37.037 25.16 1.22 36.04 3.10
154 155 9.149225 CAAATAGATCTATTGGCATGTAGAGAC 57.851 37.037 25.16 10.51 36.04 3.36
155 156 5.736951 AGATCTATTGGCATGTAGAGACC 57.263 43.478 13.38 7.32 31.05 3.85
156 157 5.150715 AGATCTATTGGCATGTAGAGACCA 58.849 41.667 13.38 0.00 31.05 4.02
157 158 5.784390 AGATCTATTGGCATGTAGAGACCAT 59.216 40.000 13.38 0.35 31.05 3.55
158 159 5.894298 TCTATTGGCATGTAGAGACCATT 57.106 39.130 6.15 0.00 30.85 3.16
159 160 6.252599 TCTATTGGCATGTAGAGACCATTT 57.747 37.500 6.15 0.00 30.85 2.32
160 161 6.057533 TCTATTGGCATGTAGAGACCATTTG 58.942 40.000 6.15 0.00 30.85 2.32
161 162 3.719268 TGGCATGTAGAGACCATTTGT 57.281 42.857 0.00 0.00 0.00 2.83
162 163 4.032960 TGGCATGTAGAGACCATTTGTT 57.967 40.909 0.00 0.00 0.00 2.83
163 164 5.172687 TGGCATGTAGAGACCATTTGTTA 57.827 39.130 0.00 0.00 0.00 2.41
164 165 5.185454 TGGCATGTAGAGACCATTTGTTAG 58.815 41.667 0.00 0.00 0.00 2.34
165 166 5.186198 GGCATGTAGAGACCATTTGTTAGT 58.814 41.667 0.00 0.00 0.00 2.24
166 167 5.065218 GGCATGTAGAGACCATTTGTTAGTG 59.935 44.000 0.00 0.00 0.00 2.74
167 168 5.065218 GCATGTAGAGACCATTTGTTAGTGG 59.935 44.000 0.00 0.00 41.35 4.00
168 169 5.160607 TGTAGAGACCATTTGTTAGTGGG 57.839 43.478 0.00 0.00 39.86 4.61
169 170 4.595781 TGTAGAGACCATTTGTTAGTGGGT 59.404 41.667 0.00 0.00 39.86 4.51
170 171 4.287766 AGAGACCATTTGTTAGTGGGTC 57.712 45.455 0.00 0.00 46.54 4.46
172 173 2.774687 GACCATTTGTTAGTGGGTCGT 58.225 47.619 0.00 0.00 38.71 4.34
173 174 3.143728 GACCATTTGTTAGTGGGTCGTT 58.856 45.455 0.00 0.00 38.71 3.85
174 175 3.558033 ACCATTTGTTAGTGGGTCGTTT 58.442 40.909 0.00 0.00 39.86 3.60
175 176 3.566742 ACCATTTGTTAGTGGGTCGTTTC 59.433 43.478 0.00 0.00 39.86 2.78
176 177 3.818773 CCATTTGTTAGTGGGTCGTTTCT 59.181 43.478 0.00 0.00 0.00 2.52
177 178 4.277423 CCATTTGTTAGTGGGTCGTTTCTT 59.723 41.667 0.00 0.00 0.00 2.52
178 179 5.449304 CATTTGTTAGTGGGTCGTTTCTTC 58.551 41.667 0.00 0.00 0.00 2.87
179 180 3.116079 TGTTAGTGGGTCGTTTCTTCC 57.884 47.619 0.00 0.00 0.00 3.46
180 181 2.701951 TGTTAGTGGGTCGTTTCTTCCT 59.298 45.455 0.00 0.00 0.00 3.36
181 182 3.135167 TGTTAGTGGGTCGTTTCTTCCTT 59.865 43.478 0.00 0.00 0.00 3.36
182 183 2.545537 AGTGGGTCGTTTCTTCCTTC 57.454 50.000 0.00 0.00 0.00 3.46
183 184 2.047830 AGTGGGTCGTTTCTTCCTTCT 58.952 47.619 0.00 0.00 0.00 2.85
184 185 2.037381 AGTGGGTCGTTTCTTCCTTCTC 59.963 50.000 0.00 0.00 0.00 2.87
185 186 2.037381 GTGGGTCGTTTCTTCCTTCTCT 59.963 50.000 0.00 0.00 0.00 3.10
186 187 2.299297 TGGGTCGTTTCTTCCTTCTCTC 59.701 50.000 0.00 0.00 0.00 3.20
187 188 2.563620 GGGTCGTTTCTTCCTTCTCTCT 59.436 50.000 0.00 0.00 0.00 3.10
188 189 3.762823 GGGTCGTTTCTTCCTTCTCTCTA 59.237 47.826 0.00 0.00 0.00 2.43
189 190 4.403113 GGGTCGTTTCTTCCTTCTCTCTAT 59.597 45.833 0.00 0.00 0.00 1.98
190 191 5.105269 GGGTCGTTTCTTCCTTCTCTCTATT 60.105 44.000 0.00 0.00 0.00 1.73
191 192 6.037726 GGTCGTTTCTTCCTTCTCTCTATTC 58.962 44.000 0.00 0.00 0.00 1.75
192 193 6.037726 GTCGTTTCTTCCTTCTCTCTATTCC 58.962 44.000 0.00 0.00 0.00 3.01
193 194 5.038033 CGTTTCTTCCTTCTCTCTATTCCG 58.962 45.833 0.00 0.00 0.00 4.30
194 195 4.657436 TTCTTCCTTCTCTCTATTCCGC 57.343 45.455 0.00 0.00 0.00 5.54
195 196 2.959707 TCTTCCTTCTCTCTATTCCGCC 59.040 50.000 0.00 0.00 0.00 6.13
196 197 1.705873 TCCTTCTCTCTATTCCGCCC 58.294 55.000 0.00 0.00 0.00 6.13
197 198 1.063190 TCCTTCTCTCTATTCCGCCCA 60.063 52.381 0.00 0.00 0.00 5.36
198 199 1.342819 CCTTCTCTCTATTCCGCCCAG 59.657 57.143 0.00 0.00 0.00 4.45
199 200 0.753262 TTCTCTCTATTCCGCCCAGC 59.247 55.000 0.00 0.00 0.00 4.85
200 201 1.115930 TCTCTCTATTCCGCCCAGCC 61.116 60.000 0.00 0.00 0.00 4.85
201 202 1.382557 TCTCTATTCCGCCCAGCCA 60.383 57.895 0.00 0.00 0.00 4.75
202 203 0.764369 TCTCTATTCCGCCCAGCCAT 60.764 55.000 0.00 0.00 0.00 4.40
203 204 0.109342 CTCTATTCCGCCCAGCCATT 59.891 55.000 0.00 0.00 0.00 3.16
204 205 1.347707 CTCTATTCCGCCCAGCCATTA 59.652 52.381 0.00 0.00 0.00 1.90
205 206 1.347707 TCTATTCCGCCCAGCCATTAG 59.652 52.381 0.00 0.00 0.00 1.73
206 207 0.250727 TATTCCGCCCAGCCATTAGC 60.251 55.000 0.00 0.00 44.25 3.09
207 208 2.983725 ATTCCGCCCAGCCATTAGCC 62.984 60.000 0.00 0.00 45.47 3.93
209 210 4.504596 CGCCCAGCCATTAGCCCA 62.505 66.667 0.00 0.00 45.47 5.36
210 211 2.520260 GCCCAGCCATTAGCCCAG 60.520 66.667 0.00 0.00 45.47 4.45
211 212 2.196776 CCCAGCCATTAGCCCAGG 59.803 66.667 0.00 0.00 45.47 4.45
212 213 2.196776 CCAGCCATTAGCCCAGGG 59.803 66.667 0.00 0.00 45.47 4.45
231 232 4.690719 AATCCCACGCGGCGACAA 62.691 61.111 30.94 11.46 0.00 3.18
242 243 4.303257 GCGACAAGCTTAAGGGCT 57.697 55.556 0.00 0.00 45.30 5.19
249 250 3.249687 AGCTTAAGGGCTTGTTCGG 57.750 52.632 4.29 0.00 39.86 4.30
250 251 0.400594 AGCTTAAGGGCTTGTTCGGT 59.599 50.000 4.29 0.00 39.86 4.69
251 252 1.202891 AGCTTAAGGGCTTGTTCGGTT 60.203 47.619 4.29 0.00 39.86 4.44
252 253 1.068541 GCTTAAGGGCTTGTTCGGTTG 60.069 52.381 4.29 0.00 0.00 3.77
253 254 1.539827 CTTAAGGGCTTGTTCGGTTGG 59.460 52.381 0.00 0.00 0.00 3.77
254 255 0.891904 TAAGGGCTTGTTCGGTTGGC 60.892 55.000 0.00 0.00 0.00 4.52
255 256 2.909965 GGGCTTGTTCGGTTGGCA 60.910 61.111 0.00 0.00 0.00 4.92
256 257 2.644992 GGCTTGTTCGGTTGGCAG 59.355 61.111 0.00 0.00 0.00 4.85
257 258 2.644992 GCTTGTTCGGTTGGCAGG 59.355 61.111 0.00 0.00 0.00 4.85
258 259 2.919494 GCTTGTTCGGTTGGCAGGG 61.919 63.158 0.00 0.00 0.00 4.45
259 260 1.228124 CTTGTTCGGTTGGCAGGGA 60.228 57.895 0.00 0.00 0.00 4.20
260 261 0.821711 CTTGTTCGGTTGGCAGGGAA 60.822 55.000 0.00 0.00 0.00 3.97
261 262 0.395862 TTGTTCGGTTGGCAGGGAAA 60.396 50.000 0.00 0.00 0.00 3.13
262 263 0.395862 TGTTCGGTTGGCAGGGAAAA 60.396 50.000 0.00 0.00 0.00 2.29
263 264 0.966179 GTTCGGTTGGCAGGGAAAAT 59.034 50.000 0.00 0.00 0.00 1.82
264 265 0.965439 TTCGGTTGGCAGGGAAAATG 59.035 50.000 0.00 0.00 0.00 2.32
265 266 0.897863 TCGGTTGGCAGGGAAAATGG 60.898 55.000 0.00 0.00 0.00 3.16
266 267 0.897863 CGGTTGGCAGGGAAAATGGA 60.898 55.000 0.00 0.00 0.00 3.41
267 268 0.897621 GGTTGGCAGGGAAAATGGAG 59.102 55.000 0.00 0.00 0.00 3.86
268 269 0.897621 GTTGGCAGGGAAAATGGAGG 59.102 55.000 0.00 0.00 0.00 4.30
269 270 0.783206 TTGGCAGGGAAAATGGAGGA 59.217 50.000 0.00 0.00 0.00 3.71
270 271 0.332632 TGGCAGGGAAAATGGAGGAG 59.667 55.000 0.00 0.00 0.00 3.69
271 272 0.396278 GGCAGGGAAAATGGAGGAGG 60.396 60.000 0.00 0.00 0.00 4.30
272 273 0.332972 GCAGGGAAAATGGAGGAGGT 59.667 55.000 0.00 0.00 0.00 3.85
273 274 1.272704 GCAGGGAAAATGGAGGAGGTT 60.273 52.381 0.00 0.00 0.00 3.50
274 275 2.450476 CAGGGAAAATGGAGGAGGTTG 58.550 52.381 0.00 0.00 0.00 3.77
275 276 1.359130 AGGGAAAATGGAGGAGGTTGG 59.641 52.381 0.00 0.00 0.00 3.77
276 277 1.186200 GGAAAATGGAGGAGGTTGGC 58.814 55.000 0.00 0.00 0.00 4.52
277 278 1.549950 GGAAAATGGAGGAGGTTGGCA 60.550 52.381 0.00 0.00 0.00 4.92
278 279 1.821136 GAAAATGGAGGAGGTTGGCAG 59.179 52.381 0.00 0.00 0.00 4.85
279 280 0.040204 AAATGGAGGAGGTTGGCAGG 59.960 55.000 0.00 0.00 0.00 4.85
280 281 1.867595 AATGGAGGAGGTTGGCAGGG 61.868 60.000 0.00 0.00 0.00 4.45
281 282 2.610859 GGAGGAGGTTGGCAGGGA 60.611 66.667 0.00 0.00 0.00 4.20
282 283 2.003548 GGAGGAGGTTGGCAGGGAT 61.004 63.158 0.00 0.00 0.00 3.85
283 284 1.575447 GGAGGAGGTTGGCAGGGATT 61.575 60.000 0.00 0.00 0.00 3.01
284 285 1.213296 GAGGAGGTTGGCAGGGATTA 58.787 55.000 0.00 0.00 0.00 1.75
285 286 0.919710 AGGAGGTTGGCAGGGATTAC 59.080 55.000 0.00 0.00 0.00 1.89
286 287 0.623723 GGAGGTTGGCAGGGATTACA 59.376 55.000 0.00 0.00 0.00 2.41
287 288 1.682087 GGAGGTTGGCAGGGATTACAC 60.682 57.143 0.00 0.00 0.00 2.90
288 289 0.331616 AGGTTGGCAGGGATTACACC 59.668 55.000 0.00 0.00 0.00 4.16
301 302 6.742559 GGGATTACACCCTCTATAAGTCAA 57.257 41.667 0.00 0.00 45.90 3.18
302 303 7.133133 GGGATTACACCCTCTATAAGTCAAA 57.867 40.000 0.00 0.00 45.90 2.69
303 304 7.571025 GGGATTACACCCTCTATAAGTCAAAA 58.429 38.462 0.00 0.00 45.90 2.44
304 305 7.498239 GGGATTACACCCTCTATAAGTCAAAAC 59.502 40.741 0.00 0.00 45.90 2.43
305 306 7.498239 GGATTACACCCTCTATAAGTCAAAACC 59.502 40.741 0.00 0.00 0.00 3.27
306 307 7.563724 TTACACCCTCTATAAGTCAAAACCT 57.436 36.000 0.00 0.00 0.00 3.50
307 308 6.051179 ACACCCTCTATAAGTCAAAACCTC 57.949 41.667 0.00 0.00 0.00 3.85
308 309 5.045797 ACACCCTCTATAAGTCAAAACCTCC 60.046 44.000 0.00 0.00 0.00 4.30
309 310 5.189934 CACCCTCTATAAGTCAAAACCTCCT 59.810 44.000 0.00 0.00 0.00 3.69
310 311 5.425862 ACCCTCTATAAGTCAAAACCTCCTC 59.574 44.000 0.00 0.00 0.00 3.71
311 312 5.163290 CCCTCTATAAGTCAAAACCTCCTCC 60.163 48.000 0.00 0.00 0.00 4.30
312 313 5.425539 CCTCTATAAGTCAAAACCTCCTCCA 59.574 44.000 0.00 0.00 0.00 3.86
313 314 6.070194 CCTCTATAAGTCAAAACCTCCTCCAA 60.070 42.308 0.00 0.00 0.00 3.53
314 315 7.366011 CCTCTATAAGTCAAAACCTCCTCCAAT 60.366 40.741 0.00 0.00 0.00 3.16
315 316 7.565680 TCTATAAGTCAAAACCTCCTCCAATC 58.434 38.462 0.00 0.00 0.00 2.67
316 317 3.441500 AGTCAAAACCTCCTCCAATCC 57.558 47.619 0.00 0.00 0.00 3.01
317 318 2.716424 AGTCAAAACCTCCTCCAATCCA 59.284 45.455 0.00 0.00 0.00 3.41
318 319 2.820197 GTCAAAACCTCCTCCAATCCAC 59.180 50.000 0.00 0.00 0.00 4.02
319 320 2.171003 CAAAACCTCCTCCAATCCACC 58.829 52.381 0.00 0.00 0.00 4.61
320 321 0.704664 AAACCTCCTCCAATCCACCC 59.295 55.000 0.00 0.00 0.00 4.61
321 322 1.214992 AACCTCCTCCAATCCACCCC 61.215 60.000 0.00 0.00 0.00 4.95
322 323 1.619363 CCTCCTCCAATCCACCCCA 60.619 63.158 0.00 0.00 0.00 4.96
323 324 1.214305 CCTCCTCCAATCCACCCCAA 61.214 60.000 0.00 0.00 0.00 4.12
324 325 0.929244 CTCCTCCAATCCACCCCAAT 59.071 55.000 0.00 0.00 0.00 3.16
325 326 0.926293 TCCTCCAATCCACCCCAATC 59.074 55.000 0.00 0.00 0.00 2.67
326 327 0.106015 CCTCCAATCCACCCCAATCC 60.106 60.000 0.00 0.00 0.00 3.01
327 328 0.106015 CTCCAATCCACCCCAATCCC 60.106 60.000 0.00 0.00 0.00 3.85
328 329 1.075301 CCAATCCACCCCAATCCCC 60.075 63.158 0.00 0.00 0.00 4.81
329 330 1.075301 CAATCCACCCCAATCCCCC 60.075 63.158 0.00 0.00 0.00 5.40
330 331 1.230956 AATCCACCCCAATCCCCCT 60.231 57.895 0.00 0.00 0.00 4.79
331 332 1.593166 AATCCACCCCAATCCCCCTG 61.593 60.000 0.00 0.00 0.00 4.45
332 333 2.823662 ATCCACCCCAATCCCCCTGT 62.824 60.000 0.00 0.00 0.00 4.00
333 334 2.360191 CACCCCAATCCCCCTGTG 59.640 66.667 0.00 0.00 0.00 3.66
334 335 2.212761 ACCCCAATCCCCCTGTGA 59.787 61.111 0.00 0.00 0.00 3.58
335 336 1.930656 ACCCCAATCCCCCTGTGAG 60.931 63.158 0.00 0.00 0.00 3.51
336 337 2.693871 CCCCAATCCCCCTGTGAGG 61.694 68.421 0.00 0.00 34.30 3.86
337 338 1.619363 CCCAATCCCCCTGTGAGGA 60.619 63.158 0.00 0.00 37.67 3.71
338 339 1.639635 CCCAATCCCCCTGTGAGGAG 61.640 65.000 0.00 0.00 37.67 3.69
339 340 1.639635 CCAATCCCCCTGTGAGGAGG 61.640 65.000 0.00 0.00 37.67 4.30
340 341 0.916358 CAATCCCCCTGTGAGGAGGT 60.916 60.000 0.00 0.00 37.67 3.85
341 342 0.916358 AATCCCCCTGTGAGGAGGTG 60.916 60.000 0.00 0.00 37.67 4.00
342 343 2.125066 ATCCCCCTGTGAGGAGGTGT 62.125 60.000 0.00 0.00 37.67 4.16
343 344 1.080354 CCCCCTGTGAGGAGGTGTA 59.920 63.158 0.00 0.00 37.67 2.90
344 345 0.546747 CCCCCTGTGAGGAGGTGTAA 60.547 60.000 0.00 0.00 37.67 2.41
345 346 0.613777 CCCCTGTGAGGAGGTGTAAC 59.386 60.000 0.00 0.00 37.67 2.50
346 347 0.613777 CCCTGTGAGGAGGTGTAACC 59.386 60.000 0.00 0.00 45.56 2.85
360 361 4.400036 GTGTAACCGAACAAAGCCTAAG 57.600 45.455 0.00 0.00 0.00 2.18
361 362 3.187842 GTGTAACCGAACAAAGCCTAAGG 59.812 47.826 0.00 0.00 0.00 2.69
362 363 1.905637 AACCGAACAAAGCCTAAGGG 58.094 50.000 0.00 0.00 0.00 3.95
363 364 0.037734 ACCGAACAAAGCCTAAGGGG 59.962 55.000 0.00 0.00 38.36 4.79
364 365 0.679960 CCGAACAAAGCCTAAGGGGG 60.680 60.000 0.00 0.00 35.12 5.40
366 367 1.545841 GAACAAAGCCTAAGGGGGTG 58.454 55.000 0.00 0.00 46.33 4.61
367 368 0.114364 AACAAAGCCTAAGGGGGTGG 59.886 55.000 0.00 0.00 46.33 4.61
368 369 0.774491 ACAAAGCCTAAGGGGGTGGA 60.774 55.000 0.00 0.00 46.33 4.02
369 370 0.631212 CAAAGCCTAAGGGGGTGGAT 59.369 55.000 0.00 0.00 46.33 3.41
370 371 0.631212 AAAGCCTAAGGGGGTGGATG 59.369 55.000 0.00 0.00 46.33 3.51
371 372 1.289244 AAGCCTAAGGGGGTGGATGG 61.289 60.000 0.00 0.00 46.33 3.51
372 373 2.768022 GCCTAAGGGGGTGGATGGG 61.768 68.421 0.00 0.00 35.12 4.00
373 374 2.084930 CCTAAGGGGGTGGATGGGG 61.085 68.421 0.00 0.00 0.00 4.96
381 382 2.672295 GTGGATGGGGCGGTGTTA 59.328 61.111 0.00 0.00 0.00 2.41
386 387 1.153249 ATGGGGCGGTGTTATGTCG 60.153 57.895 0.00 0.00 0.00 4.35
390 391 1.079681 GGCGGTGTTATGTCGTGGA 60.080 57.895 0.00 0.00 0.00 4.02
393 394 1.938016 GCGGTGTTATGTCGTGGAACT 60.938 52.381 0.00 0.00 31.75 3.01
395 396 3.176708 CGGTGTTATGTCGTGGAACTAG 58.823 50.000 0.00 0.00 31.75 2.57
398 399 2.190981 GTTATGTCGTGGAACTAGCGG 58.809 52.381 0.00 0.00 31.75 5.52
401 402 0.968901 TGTCGTGGAACTAGCGGGAT 60.969 55.000 0.00 0.00 31.75 3.85
420 421 3.036084 CGTGGTGCAGGACGTCAC 61.036 66.667 18.91 7.25 0.00 3.67
424 425 2.733593 GTGCAGGACGTCACGACC 60.734 66.667 18.91 11.02 41.48 4.79
429 430 3.986006 GGACGTCACGACCAGGCA 61.986 66.667 18.91 0.00 40.91 4.75
430 431 2.261671 GACGTCACGACCAGGCAT 59.738 61.111 11.55 0.00 0.00 4.40
440 441 0.971959 GACCAGGCATCAAATGGGCA 60.972 55.000 0.00 0.00 42.12 5.36
441 442 1.259840 ACCAGGCATCAAATGGGCAC 61.260 55.000 0.00 0.00 38.48 5.01
445 446 2.495866 CATCAAATGGGCACGGGC 59.504 61.111 0.00 0.00 40.13 6.13
468 469 2.491022 GGACGGCGGTATCTGAGCT 61.491 63.158 13.24 0.00 0.00 4.09
474 475 1.413382 GCGGTATCTGAGCTCAATCG 58.587 55.000 18.85 16.08 0.00 3.34
479 480 1.680522 ATCTGAGCTCAATCGGGCGT 61.681 55.000 18.85 0.00 0.00 5.68
485 486 4.467084 TCAATCGGGCGTGGCTCC 62.467 66.667 0.00 0.00 0.00 4.70
486 487 4.473520 CAATCGGGCGTGGCTCCT 62.474 66.667 0.00 0.00 0.00 3.69
496 497 1.817099 GTGGCTCCTGCATCGGAAG 60.817 63.158 0.00 0.00 41.91 3.46
501 502 1.813513 CTCCTGCATCGGAAGTTTGT 58.186 50.000 0.00 0.00 31.44 2.83
605 609 8.610248 TTGACTTAACCATCGATGAAACTTTA 57.390 30.769 26.86 11.86 0.00 1.85
608 634 7.391620 ACTTAACCATCGATGAAACTTTAGGA 58.608 34.615 26.86 0.00 0.00 2.94
648 676 7.504924 TTATATAGGTTTTGGATGGCTTTCG 57.495 36.000 0.00 0.00 0.00 3.46
654 682 0.400213 TTGGATGGCTTTCGGTGAGT 59.600 50.000 0.00 0.00 0.00 3.41
655 683 1.271856 TGGATGGCTTTCGGTGAGTA 58.728 50.000 0.00 0.00 0.00 2.59
668 696 8.662141 GCTTTCGGTGAGTATATTGTTTTTCTA 58.338 33.333 0.00 0.00 0.00 2.10
692 720 3.883830 TGACCACTGTGCATTTGTTTT 57.116 38.095 1.29 0.00 0.00 2.43
693 721 3.779759 TGACCACTGTGCATTTGTTTTC 58.220 40.909 1.29 0.00 0.00 2.29
694 722 2.788786 GACCACTGTGCATTTGTTTTCG 59.211 45.455 1.29 0.00 0.00 3.46
695 723 2.165437 ACCACTGTGCATTTGTTTTCGT 59.835 40.909 1.29 0.00 0.00 3.85
696 724 3.186119 CCACTGTGCATTTGTTTTCGTT 58.814 40.909 1.29 0.00 0.00 3.85
762 791 1.648504 AATTAGCAACGCCCGAGTAC 58.351 50.000 0.00 0.00 0.00 2.73
794 823 5.126061 GTGCATGTGGAAAATAGACCAAGAT 59.874 40.000 0.00 0.00 37.94 2.40
795 824 6.318648 GTGCATGTGGAAAATAGACCAAGATA 59.681 38.462 0.00 0.00 37.94 1.98
952 991 3.470888 CATCCTTCCCGCCGGACT 61.471 66.667 5.05 0.00 38.14 3.85
973 1012 1.626356 CGCCTCCAAGAATCCCTCCA 61.626 60.000 0.00 0.00 0.00 3.86
1204 1243 1.525765 TTCAAGCGCAAGTGCTCCA 60.526 52.632 11.47 0.00 46.60 3.86
1225 1264 4.183865 CAGCATCTTCCATTTCTGACGTA 58.816 43.478 0.00 0.00 0.00 3.57
1351 1397 3.367600 GGAAGGAGAAAAGACGAGAGGTC 60.368 52.174 0.00 0.00 46.45 3.85
1460 1511 4.011023 CGGGGTTGTTAATCCACATGTTA 58.989 43.478 0.00 0.00 0.00 2.41
1530 1588 7.598189 TTTGATCAATGTTACGATCCGTTTA 57.402 32.000 9.40 0.00 41.54 2.01
1538 1596 9.205916 CAATGTTACGATCCGTTTATTTTGTAG 57.794 33.333 0.00 0.00 41.54 2.74
1542 1600 9.839589 GTTACGATCCGTTTATTTTGTAGTATG 57.160 33.333 0.00 0.00 41.54 2.39
1610 1982 3.744238 TGAAAGAACGATCACACCTCA 57.256 42.857 0.00 0.00 0.00 3.86
1682 2054 3.872560 AAAACAGGACTCGCTAAAACG 57.127 42.857 0.00 0.00 0.00 3.60
1766 2384 1.069765 ATCCATGCTTCCGCTACCG 59.930 57.895 0.00 0.00 36.97 4.02
2058 2705 1.140312 TCTCTCAAGGCCCAAGTTGT 58.860 50.000 0.00 0.00 0.00 3.32
2083 2730 8.411683 GTCAGAATGGAAAGCATTGATAAGATT 58.588 33.333 0.00 0.00 36.16 2.40
2152 2802 5.701224 TGGAAGAACATTAGGGAAAACTGT 58.299 37.500 0.00 0.00 0.00 3.55
2181 2831 4.240881 TGCTTCATTCCAAAGATAGCCT 57.759 40.909 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.047164 TCCATCACAAGTTAATTTGCATGCT 60.047 36.000 20.33 0.00 0.00 3.79
1 2 5.062558 GTCCATCACAAGTTAATTTGCATGC 59.937 40.000 11.82 11.82 0.00 4.06
2 3 6.157904 TGTCCATCACAAGTTAATTTGCATG 58.842 36.000 10.35 11.76 29.30 4.06
3 4 6.343716 TGTCCATCACAAGTTAATTTGCAT 57.656 33.333 10.35 1.06 29.30 3.96
4 5 5.781210 TGTCCATCACAAGTTAATTTGCA 57.219 34.783 10.35 0.00 29.30 4.08
5 6 7.656707 ATTTGTCCATCACAAGTTAATTTGC 57.343 32.000 10.35 0.00 45.98 3.68
6 7 8.011106 GCAATTTGTCCATCACAAGTTAATTTG 58.989 33.333 8.99 8.99 45.98 2.32
7 8 7.933033 AGCAATTTGTCCATCACAAGTTAATTT 59.067 29.630 0.00 0.00 45.98 1.82
8 9 7.444299 AGCAATTTGTCCATCACAAGTTAATT 58.556 30.769 0.00 0.00 45.98 1.40
9 10 6.996509 AGCAATTTGTCCATCACAAGTTAAT 58.003 32.000 0.00 0.00 45.98 1.40
10 11 6.403866 AGCAATTTGTCCATCACAAGTTAA 57.596 33.333 0.00 0.00 45.98 2.01
11 12 7.701539 ATAGCAATTTGTCCATCACAAGTTA 57.298 32.000 0.00 0.00 45.98 2.24
12 13 4.942761 AGCAATTTGTCCATCACAAGTT 57.057 36.364 0.00 0.00 45.98 2.66
13 14 6.594788 AATAGCAATTTGTCCATCACAAGT 57.405 33.333 0.00 0.00 45.98 3.16
14 15 7.285783 CAAATAGCAATTTGTCCATCACAAG 57.714 36.000 0.00 0.00 45.98 3.16
32 33 7.337436 TCCCGTAAGTTTTATGGGAACAAATAG 59.663 37.037 21.10 0.00 46.73 1.73
33 34 7.173722 TCCCGTAAGTTTTATGGGAACAAATA 58.826 34.615 21.10 2.89 46.73 1.40
34 35 6.011481 TCCCGTAAGTTTTATGGGAACAAAT 58.989 36.000 21.10 0.00 46.73 2.32
35 36 5.383476 TCCCGTAAGTTTTATGGGAACAAA 58.617 37.500 21.10 4.06 46.73 2.83
36 37 4.983053 TCCCGTAAGTTTTATGGGAACAA 58.017 39.130 21.10 4.36 46.73 2.83
37 38 4.637387 TCCCGTAAGTTTTATGGGAACA 57.363 40.909 21.10 4.66 46.73 3.18
40 41 4.914177 ACTTCCCGTAAGTTTTATGGGA 57.086 40.909 20.00 20.00 46.61 4.37
65 66 5.664294 AACGTTCCCTAAAACCAGTTTTT 57.336 34.783 13.29 0.00 42.22 1.94
66 67 5.664294 AAACGTTCCCTAAAACCAGTTTT 57.336 34.783 12.72 12.72 44.16 2.43
67 68 5.664294 AAAACGTTCCCTAAAACCAGTTT 57.336 34.783 0.00 0.00 29.59 2.66
68 69 5.664294 AAAAACGTTCCCTAAAACCAGTT 57.336 34.783 0.00 0.00 0.00 3.16
87 88 7.334858 AGCAACTCCAACAATTTCCTTAAAAA 58.665 30.769 0.00 0.00 0.00 1.94
88 89 6.883744 AGCAACTCCAACAATTTCCTTAAAA 58.116 32.000 0.00 0.00 0.00 1.52
89 90 6.323739 AGAGCAACTCCAACAATTTCCTTAAA 59.676 34.615 0.00 0.00 0.00 1.52
90 91 5.833131 AGAGCAACTCCAACAATTTCCTTAA 59.167 36.000 0.00 0.00 0.00 1.85
91 92 5.385198 AGAGCAACTCCAACAATTTCCTTA 58.615 37.500 0.00 0.00 0.00 2.69
92 93 4.218312 AGAGCAACTCCAACAATTTCCTT 58.782 39.130 0.00 0.00 0.00 3.36
93 94 3.837355 AGAGCAACTCCAACAATTTCCT 58.163 40.909 0.00 0.00 0.00 3.36
94 95 5.009610 TGTTAGAGCAACTCCAACAATTTCC 59.990 40.000 6.20 0.00 38.65 3.13
95 96 5.915196 GTGTTAGAGCAACTCCAACAATTTC 59.085 40.000 9.61 0.00 41.85 2.17
96 97 5.359576 TGTGTTAGAGCAACTCCAACAATTT 59.640 36.000 9.61 0.00 41.85 1.82
97 98 4.887071 TGTGTTAGAGCAACTCCAACAATT 59.113 37.500 9.61 0.00 41.85 2.32
98 99 4.275936 GTGTGTTAGAGCAACTCCAACAAT 59.724 41.667 9.61 0.00 41.85 2.71
99 100 3.625764 GTGTGTTAGAGCAACTCCAACAA 59.374 43.478 9.61 0.41 41.85 2.83
100 101 3.118408 AGTGTGTTAGAGCAACTCCAACA 60.118 43.478 4.78 4.78 39.10 3.33
101 102 3.467803 AGTGTGTTAGAGCAACTCCAAC 58.532 45.455 0.00 0.00 38.05 3.77
102 103 3.838244 AGTGTGTTAGAGCAACTCCAA 57.162 42.857 0.00 0.00 38.05 3.53
103 104 4.344102 AGTTAGTGTGTTAGAGCAACTCCA 59.656 41.667 0.00 0.00 38.05 3.86
104 105 4.884247 AGTTAGTGTGTTAGAGCAACTCC 58.116 43.478 0.00 0.00 38.05 3.85
105 106 4.924462 GGAGTTAGTGTGTTAGAGCAACTC 59.076 45.833 0.00 0.00 39.61 3.01
106 107 4.344102 TGGAGTTAGTGTGTTAGAGCAACT 59.656 41.667 0.00 0.00 38.05 3.16
107 108 4.628074 TGGAGTTAGTGTGTTAGAGCAAC 58.372 43.478 0.00 0.00 37.67 4.17
108 109 4.948341 TGGAGTTAGTGTGTTAGAGCAA 57.052 40.909 0.00 0.00 0.00 3.91
109 110 4.948341 TTGGAGTTAGTGTGTTAGAGCA 57.052 40.909 0.00 0.00 0.00 4.26
110 111 7.321153 TCTATTTGGAGTTAGTGTGTTAGAGC 58.679 38.462 0.00 0.00 0.00 4.09
111 112 9.522804 GATCTATTTGGAGTTAGTGTGTTAGAG 57.477 37.037 0.00 0.00 0.00 2.43
112 113 9.256228 AGATCTATTTGGAGTTAGTGTGTTAGA 57.744 33.333 0.00 0.00 0.00 2.10
116 117 9.823647 CAATAGATCTATTTGGAGTTAGTGTGT 57.176 33.333 22.76 0.00 33.79 3.72
117 118 9.265901 CCAATAGATCTATTTGGAGTTAGTGTG 57.734 37.037 22.76 9.54 33.79 3.82
118 119 7.934120 GCCAATAGATCTATTTGGAGTTAGTGT 59.066 37.037 29.23 7.97 33.79 3.55
119 120 7.933577 TGCCAATAGATCTATTTGGAGTTAGTG 59.066 37.037 29.23 16.65 33.79 2.74
120 121 8.034313 TGCCAATAGATCTATTTGGAGTTAGT 57.966 34.615 29.23 8.52 33.79 2.24
121 122 8.944029 CATGCCAATAGATCTATTTGGAGTTAG 58.056 37.037 29.23 16.96 33.79 2.34
122 123 8.439971 ACATGCCAATAGATCTATTTGGAGTTA 58.560 33.333 29.23 19.09 33.79 2.24
123 124 7.293073 ACATGCCAATAGATCTATTTGGAGTT 58.707 34.615 29.23 16.71 33.79 3.01
124 125 6.845908 ACATGCCAATAGATCTATTTGGAGT 58.154 36.000 29.23 23.33 33.79 3.85
125 126 8.316946 TCTACATGCCAATAGATCTATTTGGAG 58.683 37.037 29.23 25.59 33.79 3.86
126 127 8.206126 TCTACATGCCAATAGATCTATTTGGA 57.794 34.615 29.23 24.83 33.79 3.53
127 128 8.316946 TCTCTACATGCCAATAGATCTATTTGG 58.683 37.037 22.76 24.06 33.79 3.28
128 129 9.149225 GTCTCTACATGCCAATAGATCTATTTG 57.851 37.037 22.76 20.22 33.79 2.32
129 130 8.317679 GGTCTCTACATGCCAATAGATCTATTT 58.682 37.037 22.76 11.65 33.79 1.40
130 131 7.455953 TGGTCTCTACATGCCAATAGATCTATT 59.544 37.037 20.20 20.20 36.27 1.73
131 132 6.956435 TGGTCTCTACATGCCAATAGATCTAT 59.044 38.462 9.57 9.57 0.00 1.98
132 133 6.314917 TGGTCTCTACATGCCAATAGATCTA 58.685 40.000 4.57 4.57 0.00 1.98
133 134 5.150715 TGGTCTCTACATGCCAATAGATCT 58.849 41.667 0.00 0.00 0.00 2.75
134 135 5.474578 TGGTCTCTACATGCCAATAGATC 57.525 43.478 0.00 0.00 0.00 2.75
135 136 6.445451 AATGGTCTCTACATGCCAATAGAT 57.555 37.500 0.00 0.00 34.39 1.98
136 137 5.894298 AATGGTCTCTACATGCCAATAGA 57.106 39.130 0.00 0.00 34.39 1.98
137 138 5.824624 ACAAATGGTCTCTACATGCCAATAG 59.175 40.000 0.00 0.00 34.39 1.73
138 139 5.754782 ACAAATGGTCTCTACATGCCAATA 58.245 37.500 0.00 0.00 34.39 1.90
139 140 4.603131 ACAAATGGTCTCTACATGCCAAT 58.397 39.130 0.00 0.00 34.39 3.16
140 141 4.032960 ACAAATGGTCTCTACATGCCAA 57.967 40.909 0.00 0.00 34.39 4.52
141 142 3.719268 ACAAATGGTCTCTACATGCCA 57.281 42.857 0.00 0.00 35.28 4.92
142 143 5.065218 CACTAACAAATGGTCTCTACATGCC 59.935 44.000 0.00 0.00 0.00 4.40
143 144 5.065218 CCACTAACAAATGGTCTCTACATGC 59.935 44.000 0.00 0.00 0.00 4.06
144 145 5.586243 CCCACTAACAAATGGTCTCTACATG 59.414 44.000 0.00 0.00 33.80 3.21
145 146 5.250774 ACCCACTAACAAATGGTCTCTACAT 59.749 40.000 0.00 0.00 33.80 2.29
146 147 4.595781 ACCCACTAACAAATGGTCTCTACA 59.404 41.667 0.00 0.00 33.80 2.74
147 148 5.161943 ACCCACTAACAAATGGTCTCTAC 57.838 43.478 0.00 0.00 33.80 2.59
148 149 4.081862 CGACCCACTAACAAATGGTCTCTA 60.082 45.833 0.00 0.00 42.63 2.43
149 150 3.306780 CGACCCACTAACAAATGGTCTCT 60.307 47.826 0.00 0.00 42.63 3.10
150 151 3.000727 CGACCCACTAACAAATGGTCTC 58.999 50.000 0.00 0.00 42.63 3.36
151 152 2.370849 ACGACCCACTAACAAATGGTCT 59.629 45.455 0.00 0.00 42.63 3.85
152 153 2.774687 ACGACCCACTAACAAATGGTC 58.225 47.619 0.00 0.00 41.64 4.02
153 154 2.943036 ACGACCCACTAACAAATGGT 57.057 45.000 0.00 0.00 33.80 3.55
154 155 3.818773 AGAAACGACCCACTAACAAATGG 59.181 43.478 0.00 0.00 35.59 3.16
155 156 5.432885 AAGAAACGACCCACTAACAAATG 57.567 39.130 0.00 0.00 0.00 2.32
156 157 4.517832 GGAAGAAACGACCCACTAACAAAT 59.482 41.667 0.00 0.00 0.00 2.32
157 158 3.878699 GGAAGAAACGACCCACTAACAAA 59.121 43.478 0.00 0.00 0.00 2.83
158 159 3.135167 AGGAAGAAACGACCCACTAACAA 59.865 43.478 0.00 0.00 0.00 2.83
159 160 2.701951 AGGAAGAAACGACCCACTAACA 59.298 45.455 0.00 0.00 0.00 2.41
160 161 3.397849 AGGAAGAAACGACCCACTAAC 57.602 47.619 0.00 0.00 0.00 2.34
161 162 3.644738 AGAAGGAAGAAACGACCCACTAA 59.355 43.478 0.00 0.00 0.00 2.24
162 163 3.236896 AGAAGGAAGAAACGACCCACTA 58.763 45.455 0.00 0.00 0.00 2.74
163 164 2.037381 GAGAAGGAAGAAACGACCCACT 59.963 50.000 0.00 0.00 0.00 4.00
164 165 2.037381 AGAGAAGGAAGAAACGACCCAC 59.963 50.000 0.00 0.00 0.00 4.61
165 166 2.299297 GAGAGAAGGAAGAAACGACCCA 59.701 50.000 0.00 0.00 0.00 4.51
166 167 2.563620 AGAGAGAAGGAAGAAACGACCC 59.436 50.000 0.00 0.00 0.00 4.46
167 168 3.945981 AGAGAGAAGGAAGAAACGACC 57.054 47.619 0.00 0.00 0.00 4.79
168 169 6.037726 GGAATAGAGAGAAGGAAGAAACGAC 58.962 44.000 0.00 0.00 0.00 4.34
169 170 5.163642 CGGAATAGAGAGAAGGAAGAAACGA 60.164 44.000 0.00 0.00 0.00 3.85
170 171 5.038033 CGGAATAGAGAGAAGGAAGAAACG 58.962 45.833 0.00 0.00 0.00 3.60
171 172 4.806775 GCGGAATAGAGAGAAGGAAGAAAC 59.193 45.833 0.00 0.00 0.00 2.78
172 173 4.141914 GGCGGAATAGAGAGAAGGAAGAAA 60.142 45.833 0.00 0.00 0.00 2.52
173 174 3.385111 GGCGGAATAGAGAGAAGGAAGAA 59.615 47.826 0.00 0.00 0.00 2.52
174 175 2.959707 GGCGGAATAGAGAGAAGGAAGA 59.040 50.000 0.00 0.00 0.00 2.87
175 176 2.036604 GGGCGGAATAGAGAGAAGGAAG 59.963 54.545 0.00 0.00 0.00 3.46
176 177 2.040178 GGGCGGAATAGAGAGAAGGAA 58.960 52.381 0.00 0.00 0.00 3.36
177 178 1.063190 TGGGCGGAATAGAGAGAAGGA 60.063 52.381 0.00 0.00 0.00 3.36
178 179 1.342819 CTGGGCGGAATAGAGAGAAGG 59.657 57.143 0.00 0.00 0.00 3.46
179 180 1.270041 GCTGGGCGGAATAGAGAGAAG 60.270 57.143 0.00 0.00 0.00 2.85
180 181 0.753262 GCTGGGCGGAATAGAGAGAA 59.247 55.000 0.00 0.00 0.00 2.87
181 182 1.115930 GGCTGGGCGGAATAGAGAGA 61.116 60.000 0.00 0.00 0.00 3.10
182 183 1.369321 GGCTGGGCGGAATAGAGAG 59.631 63.158 0.00 0.00 0.00 3.20
183 184 0.764369 ATGGCTGGGCGGAATAGAGA 60.764 55.000 0.00 0.00 0.00 3.10
184 185 0.109342 AATGGCTGGGCGGAATAGAG 59.891 55.000 0.00 0.00 0.00 2.43
185 186 1.347707 CTAATGGCTGGGCGGAATAGA 59.652 52.381 0.00 0.00 0.00 1.98
186 187 1.813513 CTAATGGCTGGGCGGAATAG 58.186 55.000 0.00 0.00 0.00 1.73
187 188 0.250727 GCTAATGGCTGGGCGGAATA 60.251 55.000 0.00 0.00 38.06 1.75
188 189 1.529244 GCTAATGGCTGGGCGGAAT 60.529 57.895 0.00 0.00 38.06 3.01
189 190 2.124320 GCTAATGGCTGGGCGGAA 60.124 61.111 0.00 0.00 38.06 4.30
190 191 4.189580 GGCTAATGGCTGGGCGGA 62.190 66.667 0.00 0.00 41.46 5.54
192 193 4.504596 TGGGCTAATGGCTGGGCG 62.505 66.667 0.00 0.00 41.46 6.13
193 194 2.520260 CTGGGCTAATGGCTGGGC 60.520 66.667 0.00 0.00 41.46 5.36
194 195 2.196776 CCTGGGCTAATGGCTGGG 59.803 66.667 0.00 0.00 41.46 4.45
195 196 2.196776 CCCTGGGCTAATGGCTGG 59.803 66.667 0.00 0.00 41.46 4.85
196 197 2.520260 GCCCTGGGCTAATGGCTG 60.520 66.667 30.42 0.00 46.69 4.85
214 215 4.690719 TTGTCGCCGCGTGGGATT 62.691 61.111 18.41 0.00 38.31 3.01
219 220 2.548587 CTTAAGCTTGTCGCCGCGTG 62.549 60.000 13.39 0.00 40.39 5.34
220 221 2.356553 TTAAGCTTGTCGCCGCGT 60.357 55.556 13.39 0.00 40.39 6.01
221 222 2.395690 CTTAAGCTTGTCGCCGCG 59.604 61.111 9.86 6.39 40.39 6.46
222 223 2.750888 CCCTTAAGCTTGTCGCCGC 61.751 63.158 9.86 0.00 40.39 6.53
223 224 2.750888 GCCCTTAAGCTTGTCGCCG 61.751 63.158 9.86 0.00 40.39 6.46
224 225 1.377333 AGCCCTTAAGCTTGTCGCC 60.377 57.895 9.86 0.00 41.41 5.54
225 226 4.303257 AGCCCTTAAGCTTGTCGC 57.697 55.556 9.86 5.39 41.41 5.19
232 233 1.068541 CAACCGAACAAGCCCTTAAGC 60.069 52.381 0.00 0.00 0.00 3.09
233 234 1.539827 CCAACCGAACAAGCCCTTAAG 59.460 52.381 0.00 0.00 0.00 1.85
234 235 1.611519 CCAACCGAACAAGCCCTTAA 58.388 50.000 0.00 0.00 0.00 1.85
235 236 0.891904 GCCAACCGAACAAGCCCTTA 60.892 55.000 0.00 0.00 0.00 2.69
236 237 2.200337 GCCAACCGAACAAGCCCTT 61.200 57.895 0.00 0.00 0.00 3.95
237 238 2.597510 GCCAACCGAACAAGCCCT 60.598 61.111 0.00 0.00 0.00 5.19
238 239 2.909965 TGCCAACCGAACAAGCCC 60.910 61.111 0.00 0.00 0.00 5.19
239 240 2.644992 CTGCCAACCGAACAAGCC 59.355 61.111 0.00 0.00 0.00 4.35
240 241 2.644992 CCTGCCAACCGAACAAGC 59.355 61.111 0.00 0.00 0.00 4.01
241 242 0.821711 TTCCCTGCCAACCGAACAAG 60.822 55.000 0.00 0.00 0.00 3.16
242 243 0.395862 TTTCCCTGCCAACCGAACAA 60.396 50.000 0.00 0.00 0.00 2.83
243 244 0.395862 TTTTCCCTGCCAACCGAACA 60.396 50.000 0.00 0.00 0.00 3.18
244 245 0.966179 ATTTTCCCTGCCAACCGAAC 59.034 50.000 0.00 0.00 0.00 3.95
245 246 0.965439 CATTTTCCCTGCCAACCGAA 59.035 50.000 0.00 0.00 0.00 4.30
246 247 0.897863 CCATTTTCCCTGCCAACCGA 60.898 55.000 0.00 0.00 0.00 4.69
247 248 0.897863 TCCATTTTCCCTGCCAACCG 60.898 55.000 0.00 0.00 0.00 4.44
248 249 0.897621 CTCCATTTTCCCTGCCAACC 59.102 55.000 0.00 0.00 0.00 3.77
249 250 0.897621 CCTCCATTTTCCCTGCCAAC 59.102 55.000 0.00 0.00 0.00 3.77
250 251 0.783206 TCCTCCATTTTCCCTGCCAA 59.217 50.000 0.00 0.00 0.00 4.52
251 252 0.332632 CTCCTCCATTTTCCCTGCCA 59.667 55.000 0.00 0.00 0.00 4.92
252 253 0.396278 CCTCCTCCATTTTCCCTGCC 60.396 60.000 0.00 0.00 0.00 4.85
253 254 0.332972 ACCTCCTCCATTTTCCCTGC 59.667 55.000 0.00 0.00 0.00 4.85
254 255 2.450476 CAACCTCCTCCATTTTCCCTG 58.550 52.381 0.00 0.00 0.00 4.45
255 256 1.359130 CCAACCTCCTCCATTTTCCCT 59.641 52.381 0.00 0.00 0.00 4.20
256 257 1.852633 CCAACCTCCTCCATTTTCCC 58.147 55.000 0.00 0.00 0.00 3.97
257 258 1.186200 GCCAACCTCCTCCATTTTCC 58.814 55.000 0.00 0.00 0.00 3.13
258 259 1.821136 CTGCCAACCTCCTCCATTTTC 59.179 52.381 0.00 0.00 0.00 2.29
259 260 1.550869 CCTGCCAACCTCCTCCATTTT 60.551 52.381 0.00 0.00 0.00 1.82
260 261 0.040204 CCTGCCAACCTCCTCCATTT 59.960 55.000 0.00 0.00 0.00 2.32
261 262 1.693640 CCTGCCAACCTCCTCCATT 59.306 57.895 0.00 0.00 0.00 3.16
262 263 2.311854 CCCTGCCAACCTCCTCCAT 61.312 63.158 0.00 0.00 0.00 3.41
263 264 2.788230 ATCCCTGCCAACCTCCTCCA 62.788 60.000 0.00 0.00 0.00 3.86
264 265 1.575447 AATCCCTGCCAACCTCCTCC 61.575 60.000 0.00 0.00 0.00 4.30
265 266 1.134068 GTAATCCCTGCCAACCTCCTC 60.134 57.143 0.00 0.00 0.00 3.71
266 267 0.919710 GTAATCCCTGCCAACCTCCT 59.080 55.000 0.00 0.00 0.00 3.69
267 268 0.623723 TGTAATCCCTGCCAACCTCC 59.376 55.000 0.00 0.00 0.00 4.30
268 269 1.682087 GGTGTAATCCCTGCCAACCTC 60.682 57.143 0.00 0.00 0.00 3.85
269 270 0.331616 GGTGTAATCCCTGCCAACCT 59.668 55.000 0.00 0.00 0.00 3.50
270 271 0.683179 GGGTGTAATCCCTGCCAACC 60.683 60.000 0.00 0.00 43.85 3.77
271 272 2.882170 GGGTGTAATCCCTGCCAAC 58.118 57.895 0.00 0.00 43.85 3.77
279 280 7.498239 GGTTTTGACTTATAGAGGGTGTAATCC 59.502 40.741 0.00 0.00 0.00 3.01
280 281 8.265764 AGGTTTTGACTTATAGAGGGTGTAATC 58.734 37.037 0.00 0.00 0.00 1.75
281 282 8.159229 AGGTTTTGACTTATAGAGGGTGTAAT 57.841 34.615 0.00 0.00 0.00 1.89
282 283 7.310858 GGAGGTTTTGACTTATAGAGGGTGTAA 60.311 40.741 0.00 0.00 0.00 2.41
283 284 6.155737 GGAGGTTTTGACTTATAGAGGGTGTA 59.844 42.308 0.00 0.00 0.00 2.90
284 285 5.045797 GGAGGTTTTGACTTATAGAGGGTGT 60.046 44.000 0.00 0.00 0.00 4.16
285 286 5.189934 AGGAGGTTTTGACTTATAGAGGGTG 59.810 44.000 0.00 0.00 0.00 4.61
286 287 5.351405 AGGAGGTTTTGACTTATAGAGGGT 58.649 41.667 0.00 0.00 0.00 4.34
287 288 5.163290 GGAGGAGGTTTTGACTTATAGAGGG 60.163 48.000 0.00 0.00 0.00 4.30
288 289 5.425539 TGGAGGAGGTTTTGACTTATAGAGG 59.574 44.000 0.00 0.00 0.00 3.69
289 290 6.546428 TGGAGGAGGTTTTGACTTATAGAG 57.454 41.667 0.00 0.00 0.00 2.43
290 291 6.945636 TTGGAGGAGGTTTTGACTTATAGA 57.054 37.500 0.00 0.00 0.00 1.98
291 292 6.768381 GGATTGGAGGAGGTTTTGACTTATAG 59.232 42.308 0.00 0.00 0.00 1.31
292 293 6.216662 TGGATTGGAGGAGGTTTTGACTTATA 59.783 38.462 0.00 0.00 0.00 0.98
293 294 5.015178 TGGATTGGAGGAGGTTTTGACTTAT 59.985 40.000 0.00 0.00 0.00 1.73
294 295 4.352595 TGGATTGGAGGAGGTTTTGACTTA 59.647 41.667 0.00 0.00 0.00 2.24
295 296 3.140144 TGGATTGGAGGAGGTTTTGACTT 59.860 43.478 0.00 0.00 0.00 3.01
296 297 2.716424 TGGATTGGAGGAGGTTTTGACT 59.284 45.455 0.00 0.00 0.00 3.41
297 298 2.820197 GTGGATTGGAGGAGGTTTTGAC 59.180 50.000 0.00 0.00 0.00 3.18
298 299 2.225017 GGTGGATTGGAGGAGGTTTTGA 60.225 50.000 0.00 0.00 0.00 2.69
299 300 2.171003 GGTGGATTGGAGGAGGTTTTG 58.829 52.381 0.00 0.00 0.00 2.44
300 301 1.077169 GGGTGGATTGGAGGAGGTTTT 59.923 52.381 0.00 0.00 0.00 2.43
301 302 0.704664 GGGTGGATTGGAGGAGGTTT 59.295 55.000 0.00 0.00 0.00 3.27
302 303 1.214992 GGGGTGGATTGGAGGAGGTT 61.215 60.000 0.00 0.00 0.00 3.50
303 304 1.619669 GGGGTGGATTGGAGGAGGT 60.620 63.158 0.00 0.00 0.00 3.85
304 305 1.214305 TTGGGGTGGATTGGAGGAGG 61.214 60.000 0.00 0.00 0.00 4.30
305 306 0.929244 ATTGGGGTGGATTGGAGGAG 59.071 55.000 0.00 0.00 0.00 3.69
306 307 0.926293 GATTGGGGTGGATTGGAGGA 59.074 55.000 0.00 0.00 0.00 3.71
307 308 0.106015 GGATTGGGGTGGATTGGAGG 60.106 60.000 0.00 0.00 0.00 4.30
308 309 0.106015 GGGATTGGGGTGGATTGGAG 60.106 60.000 0.00 0.00 0.00 3.86
309 310 1.589399 GGGGATTGGGGTGGATTGGA 61.589 60.000 0.00 0.00 0.00 3.53
310 311 1.075301 GGGGATTGGGGTGGATTGG 60.075 63.158 0.00 0.00 0.00 3.16
311 312 1.075301 GGGGGATTGGGGTGGATTG 60.075 63.158 0.00 0.00 0.00 2.67
312 313 1.230956 AGGGGGATTGGGGTGGATT 60.231 57.895 0.00 0.00 0.00 3.01
313 314 2.014550 CAGGGGGATTGGGGTGGAT 61.015 63.158 0.00 0.00 0.00 3.41
314 315 2.616893 CAGGGGGATTGGGGTGGA 60.617 66.667 0.00 0.00 0.00 4.02
315 316 2.946650 ACAGGGGGATTGGGGTGG 60.947 66.667 0.00 0.00 0.00 4.61
316 317 2.215451 CTCACAGGGGGATTGGGGTG 62.215 65.000 0.00 0.00 0.00 4.61
317 318 1.930656 CTCACAGGGGGATTGGGGT 60.931 63.158 0.00 0.00 0.00 4.95
318 319 2.693871 CCTCACAGGGGGATTGGGG 61.694 68.421 0.00 0.00 0.00 4.96
319 320 1.619363 TCCTCACAGGGGGATTGGG 60.619 63.158 0.00 0.00 35.59 4.12
320 321 1.918253 CTCCTCACAGGGGGATTGG 59.082 63.158 0.00 0.00 35.59 3.16
326 327 0.613777 GTTACACCTCCTCACAGGGG 59.386 60.000 0.00 0.00 43.56 4.79
327 328 0.613777 GGTTACACCTCCTCACAGGG 59.386 60.000 0.00 0.00 37.96 4.45
328 329 0.246635 CGGTTACACCTCCTCACAGG 59.753 60.000 0.00 0.00 35.66 4.00
329 330 1.254026 TCGGTTACACCTCCTCACAG 58.746 55.000 0.00 0.00 35.66 3.66
330 331 1.342174 GTTCGGTTACACCTCCTCACA 59.658 52.381 0.00 0.00 35.66 3.58
331 332 1.342174 TGTTCGGTTACACCTCCTCAC 59.658 52.381 0.00 0.00 35.66 3.51
332 333 1.707106 TGTTCGGTTACACCTCCTCA 58.293 50.000 0.00 0.00 35.66 3.86
333 334 2.825861 TTGTTCGGTTACACCTCCTC 57.174 50.000 0.00 0.00 35.66 3.71
334 335 2.809299 GCTTTGTTCGGTTACACCTCCT 60.809 50.000 0.00 0.00 35.66 3.69
335 336 1.534163 GCTTTGTTCGGTTACACCTCC 59.466 52.381 0.00 0.00 35.66 4.30
336 337 1.534163 GGCTTTGTTCGGTTACACCTC 59.466 52.381 0.00 0.00 35.66 3.85
337 338 1.142262 AGGCTTTGTTCGGTTACACCT 59.858 47.619 0.00 0.00 35.66 4.00
338 339 1.601166 AGGCTTTGTTCGGTTACACC 58.399 50.000 0.00 0.00 34.05 4.16
339 340 3.187842 CCTTAGGCTTTGTTCGGTTACAC 59.812 47.826 0.00 0.00 0.00 2.90
340 341 3.404899 CCTTAGGCTTTGTTCGGTTACA 58.595 45.455 0.00 0.00 0.00 2.41
341 342 2.745821 CCCTTAGGCTTTGTTCGGTTAC 59.254 50.000 0.00 0.00 0.00 2.50
342 343 2.290450 CCCCTTAGGCTTTGTTCGGTTA 60.290 50.000 0.00 0.00 0.00 2.85
343 344 1.546998 CCCCTTAGGCTTTGTTCGGTT 60.547 52.381 0.00 0.00 0.00 4.44
344 345 0.037734 CCCCTTAGGCTTTGTTCGGT 59.962 55.000 0.00 0.00 0.00 4.69
345 346 0.679960 CCCCCTTAGGCTTTGTTCGG 60.680 60.000 0.00 0.00 0.00 4.30
346 347 0.037734 ACCCCCTTAGGCTTTGTTCG 59.962 55.000 0.00 0.00 0.00 3.95
347 348 1.545841 CACCCCCTTAGGCTTTGTTC 58.454 55.000 0.00 0.00 0.00 3.18
348 349 0.114364 CCACCCCCTTAGGCTTTGTT 59.886 55.000 0.00 0.00 0.00 2.83
349 350 0.774491 TCCACCCCCTTAGGCTTTGT 60.774 55.000 0.00 0.00 0.00 2.83
350 351 0.631212 ATCCACCCCCTTAGGCTTTG 59.369 55.000 0.00 0.00 0.00 2.77
351 352 0.631212 CATCCACCCCCTTAGGCTTT 59.369 55.000 0.00 0.00 0.00 3.51
352 353 1.289244 CCATCCACCCCCTTAGGCTT 61.289 60.000 0.00 0.00 0.00 4.35
353 354 1.697754 CCATCCACCCCCTTAGGCT 60.698 63.158 0.00 0.00 0.00 4.58
354 355 2.768022 CCCATCCACCCCCTTAGGC 61.768 68.421 0.00 0.00 0.00 3.93
355 356 2.084930 CCCCATCCACCCCCTTAGG 61.085 68.421 0.00 0.00 0.00 2.69
356 357 2.768022 GCCCCATCCACCCCCTTAG 61.768 68.421 0.00 0.00 0.00 2.18
357 358 2.698406 GCCCCATCCACCCCCTTA 60.698 66.667 0.00 0.00 0.00 2.69
363 364 2.279037 ATAACACCGCCCCATCCACC 62.279 60.000 0.00 0.00 0.00 4.61
364 365 1.101049 CATAACACCGCCCCATCCAC 61.101 60.000 0.00 0.00 0.00 4.02
365 366 1.225983 CATAACACCGCCCCATCCA 59.774 57.895 0.00 0.00 0.00 3.41
366 367 0.818040 GACATAACACCGCCCCATCC 60.818 60.000 0.00 0.00 0.00 3.51
367 368 1.157870 CGACATAACACCGCCCCATC 61.158 60.000 0.00 0.00 0.00 3.51
368 369 1.153249 CGACATAACACCGCCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
369 370 2.266372 CGACATAACACCGCCCCA 59.734 61.111 0.00 0.00 0.00 4.96
370 371 2.104253 CACGACATAACACCGCCCC 61.104 63.158 0.00 0.00 0.00 5.80
371 372 2.104253 CCACGACATAACACCGCCC 61.104 63.158 0.00 0.00 0.00 6.13
372 373 0.671163 TTCCACGACATAACACCGCC 60.671 55.000 0.00 0.00 0.00 6.13
373 374 0.441145 GTTCCACGACATAACACCGC 59.559 55.000 0.00 0.00 0.00 5.68
381 382 0.968901 TCCCGCTAGTTCCACGACAT 60.969 55.000 0.00 0.00 0.00 3.06
386 387 1.883084 CGCATCCCGCTAGTTCCAC 60.883 63.158 0.00 0.00 39.08 4.02
390 391 2.186903 CCACGCATCCCGCTAGTT 59.813 61.111 0.00 0.00 41.76 2.24
393 394 4.830765 GCACCACGCATCCCGCTA 62.831 66.667 0.00 0.00 41.76 4.26
408 409 3.207547 CTGGTCGTGACGTCCTGCA 62.208 63.158 20.74 1.55 36.17 4.41
415 416 0.948623 TTTGATGCCTGGTCGTGACG 60.949 55.000 0.00 0.00 0.00 4.35
417 418 1.452110 CATTTGATGCCTGGTCGTGA 58.548 50.000 0.00 0.00 0.00 4.35
420 421 2.008268 GCCCATTTGATGCCTGGTCG 62.008 60.000 0.00 0.00 0.00 4.79
424 425 1.140161 CGTGCCCATTTGATGCCTG 59.860 57.895 0.00 0.00 0.00 4.85
429 430 2.037049 TGCCCGTGCCCATTTGAT 59.963 55.556 0.00 0.00 36.33 2.57
430 431 2.676121 CTGCCCGTGCCCATTTGA 60.676 61.111 0.00 0.00 36.33 2.69
445 446 2.106332 GATACCGCCGTCCACCTG 59.894 66.667 0.00 0.00 0.00 4.00
452 453 1.320344 TTGAGCTCAGATACCGCCGT 61.320 55.000 17.43 0.00 0.00 5.68
453 454 0.032678 ATTGAGCTCAGATACCGCCG 59.967 55.000 17.43 0.00 0.00 6.46
457 458 1.606737 GCCCGATTGAGCTCAGATACC 60.607 57.143 17.43 4.86 0.00 2.73
459 460 0.315251 CGCCCGATTGAGCTCAGATA 59.685 55.000 17.43 2.24 0.00 1.98
468 469 4.467084 GGAGCCACGCCCGATTGA 62.467 66.667 0.00 0.00 0.00 2.57
479 480 1.841302 AACTTCCGATGCAGGAGCCA 61.841 55.000 0.00 0.00 41.98 4.75
485 486 1.522668 TGGACAAACTTCCGATGCAG 58.477 50.000 0.00 0.00 38.69 4.41
486 487 1.974265 TTGGACAAACTTCCGATGCA 58.026 45.000 0.00 0.00 38.69 3.96
491 492 6.364976 GGTAAAAATGATTGGACAAACTTCCG 59.635 38.462 0.00 0.00 38.69 4.30
496 497 7.096230 CGTCAAGGTAAAAATGATTGGACAAAC 60.096 37.037 0.00 0.00 0.00 2.93
501 502 7.461182 AATCGTCAAGGTAAAAATGATTGGA 57.539 32.000 0.00 0.00 0.00 3.53
533 537 5.874897 AAACATAATAGCATTGGCCATGT 57.125 34.783 6.09 0.56 42.56 3.21
582 586 7.548075 TCCTAAAGTTTCATCGATGGTTAAGTC 59.452 37.037 24.61 9.25 0.00 3.01
589 593 6.908825 TGTTTTCCTAAAGTTTCATCGATGG 58.091 36.000 24.61 5.94 0.00 3.51
631 657 0.966179 ACCGAAAGCCATCCAAAACC 59.034 50.000 0.00 0.00 0.00 3.27
638 664 5.057149 ACAATATACTCACCGAAAGCCATC 58.943 41.667 0.00 0.00 0.00 3.51
655 683 9.131791 ACAGTGGTCAAACTAGAAAAACAATAT 57.868 29.630 0.00 0.00 0.00 1.28
668 696 2.760092 ACAAATGCACAGTGGTCAAACT 59.240 40.909 1.84 0.00 0.00 2.66
692 720 9.853555 AAACATAAATTCATCAAGCATAAACGA 57.146 25.926 0.00 0.00 0.00 3.85
794 823 5.284079 GGCGTAATTTGGAGTATCTCGTTA 58.716 41.667 0.00 0.00 33.73 3.18
795 824 4.117685 GGCGTAATTTGGAGTATCTCGTT 58.882 43.478 0.00 0.00 33.73 3.85
952 991 1.306997 AGGGATTCTTGGAGGCGGA 60.307 57.895 0.00 0.00 0.00 5.54
1204 1243 3.340814 ACGTCAGAAATGGAAGATGCT 57.659 42.857 0.00 0.00 0.00 3.79
1232 1271 1.345176 GAAAATCGAGCCGCACGAG 59.655 57.895 17.67 0.00 42.81 4.18
1493 1544 7.218228 ACATTGATCAAAACACTTGCATCTA 57.782 32.000 13.09 0.00 0.00 1.98
1530 1588 6.735678 TGCGAACATGACATACTACAAAAT 57.264 33.333 0.00 0.00 0.00 1.82
1610 1982 9.757227 TTGGTGTTTTCTTTAATGAAAATCGAT 57.243 25.926 24.00 0.00 44.42 3.59
1630 2002 6.103330 GTGGTTCTTTGTAAAACATTGGTGT 58.897 36.000 0.00 0.00 41.28 4.16
1662 2034 3.460103 TCGTTTTAGCGAGTCCTGTTTT 58.540 40.909 0.00 0.00 35.83 2.43
1663 2035 3.102052 TCGTTTTAGCGAGTCCTGTTT 57.898 42.857 0.00 0.00 35.83 2.83
1682 2054 2.592861 GCACATGGGCGGATCCTC 60.593 66.667 3.02 0.46 34.39 3.71
1766 2384 6.655003 TCATTATCTCACCAAAGAGAAACCAC 59.345 38.462 0.00 0.00 46.81 4.16
1944 2590 7.680442 TTGTCTGCTAAATGTGTGCTATAAA 57.320 32.000 0.00 0.00 0.00 1.40
2058 2705 8.529424 AATCTTATCAATGCTTTCCATTCTGA 57.471 30.769 0.00 0.00 42.15 3.27
2083 2730 3.777106 AGATCAAGTTCAACCTGCTGA 57.223 42.857 0.00 0.00 0.00 4.26
2181 2831 7.111247 AGTTGTCTTTGGATGACATTTTTGA 57.889 32.000 0.00 0.00 42.95 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.