Multiple sequence alignment - TraesCS7B01G411900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G411900 chr7B 100.000 5843 0 0 1 5843 680112516 680118358 0.000000e+00 10791.0
1 TraesCS7B01G411900 chr7B 94.937 79 4 0 3157 3235 700420672 700420750 2.210000e-24 124.0
2 TraesCS7B01G411900 chr7B 87.500 80 9 1 3020 3098 700420749 700420670 2.240000e-14 91.6
3 TraesCS7B01G411900 chr7A 95.594 4653 175 18 452 5089 692876465 692881102 0.000000e+00 7430.0
4 TraesCS7B01G411900 chr7A 80.273 1318 169 40 4506 5816 692896613 692897846 0.000000e+00 909.0
5 TraesCS7B01G411900 chr7A 92.952 227 9 3 129 350 692876152 692876376 2.030000e-84 324.0
6 TraesCS7B01G411900 chr7A 89.691 194 20 0 4416 4609 692896562 692896755 1.260000e-61 248.0
7 TraesCS7B01G411900 chr7A 87.912 91 10 1 3020 3109 701309014 701308924 8.010000e-19 106.0
8 TraesCS7B01G411900 chr7D 95.113 4665 141 33 461 5089 600882815 600887428 0.000000e+00 7271.0
9 TraesCS7B01G411900 chr7D 81.900 1000 102 30 4829 5816 600923285 600924217 0.000000e+00 771.0
10 TraesCS7B01G411900 chr7D 89.175 194 20 1 4416 4609 600921953 600922145 2.100000e-59 241.0
11 TraesCS7B01G411900 chr7D 78.963 328 48 7 4506 4832 600922003 600922310 2.760000e-48 204.0
12 TraesCS7B01G411900 chr1A 87.861 346 31 9 2514 2851 448929301 448929643 4.240000e-106 396.0
13 TraesCS7B01G411900 chr2B 82.535 355 50 9 2525 2874 347064761 347065108 9.520000e-78 302.0
14 TraesCS7B01G411900 chr2D 82.254 355 53 8 2525 2874 392364807 392365156 1.230000e-76 298.0
15 TraesCS7B01G411900 chr2D 81.690 355 53 9 2525 2874 106676506 106676853 9.580000e-73 285.0
16 TraesCS7B01G411900 chr6A 81.793 368 53 11 2528 2890 445769189 445768831 4.430000e-76 296.0
17 TraesCS7B01G411900 chr6A 73.451 678 141 33 3356 4009 128444608 128443946 9.860000e-53 219.0
18 TraesCS7B01G411900 chr6A 90.400 125 12 0 4330 4454 128443571 128443447 1.300000e-36 165.0
19 TraesCS7B01G411900 chr6A 75.510 294 51 13 1803 2092 128446075 128445799 2.210000e-24 124.0
20 TraesCS7B01G411900 chr3A 82.254 355 51 9 2525 2874 114697409 114697756 4.430000e-76 296.0
21 TraesCS7B01G411900 chr1D 81.870 353 50 11 2532 2873 46629043 46629392 9.580000e-73 285.0
22 TraesCS7B01G411900 chr6D 73.599 678 142 32 3356 4009 105821720 105821056 5.890000e-55 226.0
23 TraesCS7B01G411900 chr6D 73.905 571 106 35 1803 2358 105822409 105821867 7.730000e-44 189.0
24 TraesCS7B01G411900 chr6D 91.200 125 11 0 4330 4454 105820659 105820535 2.800000e-38 171.0
25 TraesCS7B01G411900 chr6D 88.393 112 8 3 3131 3242 32450451 32450345 4.750000e-26 130.0
26 TraesCS7B01G411900 chr6B 73.225 676 147 30 3356 4009 192351305 192350642 1.280000e-51 215.0
27 TraesCS7B01G411900 chr6B 90.400 125 12 0 4330 4454 192350244 192350120 1.300000e-36 165.0
28 TraesCS7B01G411900 chr6B 77.104 297 41 19 1803 2092 192352907 192352631 4.720000e-31 147.0
29 TraesCS7B01G411900 chr5A 83.043 230 27 6 3020 3238 369628532 369628304 1.280000e-46 198.0
30 TraesCS7B01G411900 chr5D 82.819 227 30 4 3020 3238 278633962 278634187 1.660000e-45 195.0
31 TraesCS7B01G411900 chr4B 83.099 213 28 6 3023 3234 416249219 416249014 2.780000e-43 187.0
32 TraesCS7B01G411900 chr3B 82.075 212 26 10 3025 3235 8853134 8853334 2.800000e-38 171.0
33 TraesCS7B01G411900 chr5B 78.571 154 24 6 3054 3206 653701148 653701293 6.230000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G411900 chr7B 680112516 680118358 5842 False 10791.000000 10791 100.000 1 5843 1 chr7B.!!$F1 5842
1 TraesCS7B01G411900 chr7A 692876152 692881102 4950 False 3877.000000 7430 94.273 129 5089 2 chr7A.!!$F1 4960
2 TraesCS7B01G411900 chr7A 692896562 692897846 1284 False 578.500000 909 84.982 4416 5816 2 chr7A.!!$F2 1400
3 TraesCS7B01G411900 chr7D 600882815 600887428 4613 False 7271.000000 7271 95.113 461 5089 1 chr7D.!!$F1 4628
4 TraesCS7B01G411900 chr7D 600921953 600924217 2264 False 405.333333 771 83.346 4416 5816 3 chr7D.!!$F2 1400

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.172803 GTGGTTAGGTGACGCGAGAT 59.827 55.000 15.93 0.0 0.00 2.75 F
359 365 0.176910 TGCTTCAGTGAACACCGACA 59.823 50.000 0.08 0.0 0.00 4.35 F
453 459 0.250553 TTACAAGAACAGGGCGGGTG 60.251 55.000 0.00 0.0 0.00 4.61 F
931 977 0.320946 CCGCTCTGTTAAAACCCCGA 60.321 55.000 0.00 0.0 0.00 5.14 F
1569 1615 0.680921 TATTGCAACAGAGCCTGGGC 60.681 55.000 0.00 3.0 42.33 5.36 F
2565 2611 1.270305 CCCGAACTTGCAGAAGACTGA 60.270 52.381 0.00 0.0 46.03 3.41 F
3059 3120 1.318158 GGCTGGCTGTGGAAATGAGG 61.318 60.000 0.00 0.0 0.00 3.86 F
4553 4619 2.398498 CGGTCGAGGATAAGAATGCTG 58.602 52.381 0.00 0.0 33.29 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 1851 0.108945 GCAAGGCTGAATGCTGGAAC 60.109 55.000 2.44 0.00 42.39 3.62 R
1840 1886 3.559238 AAACACCGAAGAATGATGTGC 57.441 42.857 0.00 0.00 0.00 4.57 R
1940 1986 8.382030 TGTGATATGATGATGTAAATGGACAC 57.618 34.615 0.00 0.00 30.52 3.67 R
2613 2659 4.571984 AGCTTGAACATTTGAAAGGTTTGC 59.428 37.500 9.42 13.17 0.00 3.68 R
3315 3378 0.403655 TGCCTGTGTAGCCCAAATCA 59.596 50.000 0.00 0.00 0.00 2.57 R
4553 4619 0.864455 GCTGATTGATCGCTAGCACC 59.136 55.000 16.45 3.26 34.64 5.01 R
4615 4681 0.251297 CACTGGCATTCTTGTCCCCA 60.251 55.000 0.00 0.00 0.00 4.96 R
5616 6675 0.104304 AAAGACTCAGCACGAACGGT 59.896 50.000 0.00 0.00 0.00 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.690786 TCCGAATTTCGTGGTTAGGTG 58.309 47.619 16.89 0.00 38.40 4.00
21 22 2.299582 TCCGAATTTCGTGGTTAGGTGA 59.700 45.455 16.89 1.90 38.40 4.02
22 23 2.414138 CCGAATTTCGTGGTTAGGTGAC 59.586 50.000 16.89 0.00 38.40 3.67
23 24 2.091588 CGAATTTCGTGGTTAGGTGACG 59.908 50.000 10.61 0.00 34.72 4.35
24 25 1.435577 ATTTCGTGGTTAGGTGACGC 58.564 50.000 0.00 0.00 33.11 5.19
25 26 0.940519 TTTCGTGGTTAGGTGACGCG 60.941 55.000 3.53 3.53 33.11 6.01
26 27 1.794151 TTCGTGGTTAGGTGACGCGA 61.794 55.000 15.93 0.00 33.11 5.87
27 28 1.800315 CGTGGTTAGGTGACGCGAG 60.800 63.158 15.93 0.00 0.00 5.03
28 29 1.582968 GTGGTTAGGTGACGCGAGA 59.417 57.895 15.93 0.00 0.00 4.04
29 30 0.172803 GTGGTTAGGTGACGCGAGAT 59.827 55.000 15.93 0.00 0.00 2.75
30 31 0.454600 TGGTTAGGTGACGCGAGATC 59.545 55.000 15.93 0.00 0.00 2.75
31 32 0.248949 GGTTAGGTGACGCGAGATCC 60.249 60.000 15.93 9.71 0.00 3.36
32 33 0.248949 GTTAGGTGACGCGAGATCCC 60.249 60.000 15.93 4.93 0.00 3.85
33 34 1.721664 TTAGGTGACGCGAGATCCCG 61.722 60.000 15.93 0.00 0.00 5.14
42 43 4.593864 GAGATCCCGCCGCCAGTC 62.594 72.222 0.00 0.00 0.00 3.51
65 66 4.710167 GGCCCGCTTACCCGTGTT 62.710 66.667 0.00 0.00 0.00 3.32
66 67 2.670592 GCCCGCTTACCCGTGTTT 60.671 61.111 0.00 0.00 0.00 2.83
67 68 2.973316 GCCCGCTTACCCGTGTTTG 61.973 63.158 0.00 0.00 0.00 2.93
68 69 2.329614 CCCGCTTACCCGTGTTTGG 61.330 63.158 0.00 0.00 0.00 3.28
75 76 3.074281 CCCGTGTTTGGGGCTAGA 58.926 61.111 0.00 0.00 46.17 2.43
76 77 1.078426 CCCGTGTTTGGGGCTAGAG 60.078 63.158 0.00 0.00 46.17 2.43
77 78 1.745489 CCGTGTTTGGGGCTAGAGC 60.745 63.158 0.00 0.00 41.14 4.09
78 79 1.296715 CGTGTTTGGGGCTAGAGCT 59.703 57.895 0.81 0.00 41.70 4.09
79 80 0.741221 CGTGTTTGGGGCTAGAGCTC 60.741 60.000 5.27 5.27 41.88 4.09
85 86 2.197875 GGGCTAGAGCTCCCCGTA 59.802 66.667 10.93 0.00 41.70 4.02
86 87 1.904378 GGGCTAGAGCTCCCCGTAG 60.904 68.421 10.93 6.73 41.70 3.51
87 88 2.566570 GGCTAGAGCTCCCCGTAGC 61.567 68.421 19.43 19.43 43.11 3.58
93 94 2.978824 GCTCCCCGTAGCTGTCAA 59.021 61.111 0.00 0.00 39.50 3.18
94 95 1.153549 GCTCCCCGTAGCTGTCAAG 60.154 63.158 0.00 0.00 39.50 3.02
113 114 1.887320 GCTCAATTTAGCGTGTGCAG 58.113 50.000 0.00 0.00 46.23 4.41
114 115 1.464608 GCTCAATTTAGCGTGTGCAGA 59.535 47.619 0.00 0.00 46.23 4.26
115 116 2.475187 GCTCAATTTAGCGTGTGCAGAG 60.475 50.000 0.00 0.00 46.23 3.35
116 117 2.738846 CTCAATTTAGCGTGTGCAGAGT 59.261 45.455 0.00 0.00 46.23 3.24
117 118 3.138304 TCAATTTAGCGTGTGCAGAGTT 58.862 40.909 0.00 0.00 46.23 3.01
118 119 3.563808 TCAATTTAGCGTGTGCAGAGTTT 59.436 39.130 0.00 0.00 46.23 2.66
119 120 4.752604 TCAATTTAGCGTGTGCAGAGTTTA 59.247 37.500 0.00 0.00 46.23 2.01
120 121 4.928661 ATTTAGCGTGTGCAGAGTTTAG 57.071 40.909 0.00 0.00 46.23 1.85
121 122 3.380479 TTAGCGTGTGCAGAGTTTAGT 57.620 42.857 0.00 0.00 46.23 2.24
122 123 2.240493 AGCGTGTGCAGAGTTTAGTT 57.760 45.000 0.00 0.00 46.23 2.24
123 124 2.561569 AGCGTGTGCAGAGTTTAGTTT 58.438 42.857 0.00 0.00 46.23 2.66
124 125 2.943033 AGCGTGTGCAGAGTTTAGTTTT 59.057 40.909 0.00 0.00 46.23 2.43
125 126 4.124238 AGCGTGTGCAGAGTTTAGTTTTA 58.876 39.130 0.00 0.00 46.23 1.52
126 127 4.755123 AGCGTGTGCAGAGTTTAGTTTTAT 59.245 37.500 0.00 0.00 46.23 1.40
127 128 5.238650 AGCGTGTGCAGAGTTTAGTTTTATT 59.761 36.000 0.00 0.00 46.23 1.40
181 187 2.105930 CCGCCTGCTCTCTGTAGC 59.894 66.667 0.00 0.00 43.08 3.58
257 263 1.154205 CGAGCCGATTAAGCAGTGGG 61.154 60.000 0.00 0.00 0.00 4.61
330 336 2.203998 CCTCAGTGGGGGTGGACT 60.204 66.667 0.00 0.00 0.00 3.85
331 337 1.847968 CCTCAGTGGGGGTGGACTT 60.848 63.158 0.00 0.00 0.00 3.01
335 341 0.539669 CAGTGGGGGTGGACTTTTCC 60.540 60.000 0.00 0.00 43.19 3.13
350 356 0.179059 TTTCCGTGCTGCTTCAGTGA 60.179 50.000 0.00 0.00 33.43 3.41
351 357 0.179059 TTCCGTGCTGCTTCAGTGAA 60.179 50.000 5.25 5.25 33.43 3.18
352 358 0.880278 TCCGTGCTGCTTCAGTGAAC 60.880 55.000 0.08 0.16 33.43 3.18
355 361 0.308993 GTGCTGCTTCAGTGAACACC 59.691 55.000 11.45 4.32 33.43 4.16
357 363 0.880278 GCTGCTTCAGTGAACACCGA 60.880 55.000 0.08 0.00 33.43 4.69
358 364 0.861837 CTGCTTCAGTGAACACCGAC 59.138 55.000 0.08 0.00 0.00 4.79
359 365 0.176910 TGCTTCAGTGAACACCGACA 59.823 50.000 0.08 0.00 0.00 4.35
360 366 1.202639 TGCTTCAGTGAACACCGACAT 60.203 47.619 0.08 0.00 0.00 3.06
361 367 2.036604 TGCTTCAGTGAACACCGACATA 59.963 45.455 0.08 0.00 0.00 2.29
362 368 2.668457 GCTTCAGTGAACACCGACATAG 59.332 50.000 0.08 0.00 0.00 2.23
363 369 3.254060 CTTCAGTGAACACCGACATAGG 58.746 50.000 0.08 0.00 37.30 2.57
365 371 2.230508 TCAGTGAACACCGACATAGGAC 59.769 50.000 1.11 0.00 34.73 3.85
366 372 1.201647 AGTGAACACCGACATAGGACG 59.798 52.381 1.11 0.00 34.73 4.79
408 414 6.829229 AGGCCACATGATAATGATTACATG 57.171 37.500 5.01 17.93 43.56 3.21
410 416 6.779049 AGGCCACATGATAATGATTACATGTT 59.221 34.615 20.48 10.81 46.98 2.71
411 417 7.288389 AGGCCACATGATAATGATTACATGTTT 59.712 33.333 20.48 0.00 46.98 2.83
412 418 7.596248 GGCCACATGATAATGATTACATGTTTC 59.404 37.037 20.48 16.52 46.98 2.78
413 419 8.355169 GCCACATGATAATGATTACATGTTTCT 58.645 33.333 20.48 6.68 46.98 2.52
440 446 3.810310 TTGGGCTGGTTTTGTTACAAG 57.190 42.857 0.00 0.00 0.00 3.16
445 451 4.359706 GGCTGGTTTTGTTACAAGAACAG 58.640 43.478 23.79 23.79 0.00 3.16
453 459 0.250553 TTACAAGAACAGGGCGGGTG 60.251 55.000 0.00 0.00 0.00 4.61
509 536 8.387354 TGTGAATTGTGATGCTTTAGTTATACG 58.613 33.333 0.00 0.00 0.00 3.06
530 572 2.214347 CAGAGATTGGAGAGCTGCATG 58.786 52.381 1.02 0.00 0.00 4.06
534 576 4.080695 AGAGATTGGAGAGCTGCATGTTTA 60.081 41.667 1.02 0.00 0.00 2.01
550 592 6.092092 GCATGTTTACTGTATTGAATGCACA 58.908 36.000 14.88 0.00 39.13 4.57
551 593 6.753279 GCATGTTTACTGTATTGAATGCACAT 59.247 34.615 14.88 0.00 39.13 3.21
570 612 1.154035 GTTTGGAAAGCATCGCCGG 60.154 57.895 0.00 0.00 0.00 6.13
594 636 1.538512 TGCTGCTGTGCTCTCATTTTC 59.461 47.619 0.00 0.00 0.00 2.29
661 705 6.127479 GCCTTGAGAGATAGGATATACTGGTG 60.127 46.154 0.00 0.00 33.13 4.17
665 709 4.702612 AGAGATAGGATATACTGGTGCACG 59.297 45.833 11.45 0.00 0.00 5.34
666 710 4.408276 AGATAGGATATACTGGTGCACGT 58.592 43.478 11.45 6.69 0.00 4.49
755 799 1.803334 TCCGCAACATTGTGAGGTAC 58.197 50.000 6.74 0.00 41.01 3.34
759 803 2.413837 GCAACATTGTGAGGTACGAGT 58.586 47.619 0.00 0.00 0.00 4.18
762 806 4.552355 CAACATTGTGAGGTACGAGTACA 58.448 43.478 14.40 0.00 37.78 2.90
772 816 7.141363 GTGAGGTACGAGTACAACTTTCTAAA 58.859 38.462 14.40 0.00 37.78 1.85
837 882 7.554476 GCAATCTTTACTAATGACCTCTTTCCT 59.446 37.037 0.00 0.00 0.00 3.36
844 890 5.649831 ACTAATGACCTCTTTCCTGATTTGC 59.350 40.000 0.00 0.00 0.00 3.68
912 958 2.489938 TTCTGGACCTGGTATGTTGC 57.510 50.000 0.00 0.00 0.00 4.17
918 964 1.221840 CCTGGTATGTTGCCGCTCT 59.778 57.895 0.00 0.00 0.00 4.09
931 977 0.320946 CCGCTCTGTTAAAACCCCGA 60.321 55.000 0.00 0.00 0.00 5.14
965 1011 8.942338 CAGTATGCTGTGGATTTACTTTACTA 57.058 34.615 2.12 0.00 37.92 1.82
972 1018 9.983804 GCTGTGGATTTACTTTACTATTAACAC 57.016 33.333 0.00 0.00 0.00 3.32
1047 1093 6.091986 CCAAAACTGAGAAGCTATCTGAAGAC 59.908 42.308 11.27 0.00 38.96 3.01
1200 1246 9.262358 GGAAATGTACAGATGTAGAATTCCTAC 57.738 37.037 21.24 5.15 44.23 3.18
1209 1255 6.550108 AGATGTAGAATTCCTACCATACACGT 59.450 38.462 0.65 0.00 45.60 4.49
1302 1348 7.338957 GTGGACAGGGATACTAGGTATACATAC 59.661 44.444 5.01 0.00 31.35 2.39
1321 1367 7.003402 ACATACCCAAATGCTTATTTGTTGT 57.997 32.000 10.70 9.71 39.27 3.32
1484 1530 3.930336 TGATCTGGTGTTGACATGACTC 58.070 45.455 0.00 0.00 0.00 3.36
1530 1576 6.142817 GCATTATGTACCGAATAGCTTTTGG 58.857 40.000 11.33 11.33 0.00 3.28
1569 1615 0.680921 TATTGCAACAGAGCCTGGGC 60.681 55.000 0.00 3.00 42.33 5.36
1708 1754 5.112686 AGTTACTTGAAGCTGTAGCATAGC 58.887 41.667 6.65 0.00 45.16 2.97
1804 1850 4.917906 AGTCTCTAACCCTTTGAGCAAT 57.082 40.909 0.00 0.00 0.00 3.56
1805 1851 4.583871 AGTCTCTAACCCTTTGAGCAATG 58.416 43.478 0.00 0.00 0.00 2.82
1840 1886 3.430098 GCCTTGCTAGATATCGATGAGGG 60.430 52.174 8.54 8.14 0.00 4.30
1940 1986 7.797038 TGATCTTATCCACATCATGTCAAAG 57.203 36.000 0.00 0.00 0.00 2.77
1946 1992 3.148412 CCACATCATGTCAAAGTGTCCA 58.852 45.455 0.00 0.00 0.00 4.02
2133 2179 7.475840 CCAGCTTGAGTACTTTTCCATTTATC 58.524 38.462 0.00 0.00 0.00 1.75
2557 2603 2.288579 TGTACTACACCCGAACTTGCAG 60.289 50.000 0.00 0.00 0.00 4.41
2565 2611 1.270305 CCCGAACTTGCAGAAGACTGA 60.270 52.381 0.00 0.00 46.03 3.41
2779 2835 7.670009 TGGATGTTATTTTTGGCAGAAATTG 57.330 32.000 19.46 0.00 0.00 2.32
2917 2973 9.987272 TCACTCTCCTTAATCATGTGTAATATG 57.013 33.333 0.00 0.00 36.70 1.78
3056 3117 1.766494 TATGGCTGGCTGTGGAAATG 58.234 50.000 2.00 0.00 0.00 2.32
3059 3120 1.318158 GGCTGGCTGTGGAAATGAGG 61.318 60.000 0.00 0.00 0.00 3.86
3146 3208 9.761504 GTTAACCCTTAATTAGTAGGCTTCTAG 57.238 37.037 0.00 0.00 0.00 2.43
3315 3378 7.620880 TCCTCTGTAGTACTGTTGCATTTTAT 58.379 34.615 5.39 0.00 0.00 1.40
3328 3391 5.929058 TGCATTTTATGATTTGGGCTACA 57.071 34.783 0.00 0.00 0.00 2.74
4252 4318 3.118261 TCATCCATGAGCACCTAAAGACC 60.118 47.826 0.00 0.00 32.11 3.85
4553 4619 2.398498 CGGTCGAGGATAAGAATGCTG 58.602 52.381 0.00 0.00 33.29 4.41
4615 4681 1.901591 CTGGTGGACAATCAGCTGTT 58.098 50.000 14.67 1.65 36.25 3.16
4700 4766 5.059404 ACTGAACAACTCCACTTTGTTTG 57.941 39.130 2.24 2.39 45.16 2.93
4746 4813 4.101585 TCATTCAGTTCCACTCAACTCTGT 59.898 41.667 0.00 0.00 34.17 3.41
4788 4855 7.726216 TCTCTTCATTGTCAGTCTTTCTGTTA 58.274 34.615 0.00 0.00 43.97 2.41
4904 5949 3.584406 TGACTTCTGAATCCTGGTGTGAT 59.416 43.478 0.00 0.00 0.00 3.06
4905 5950 3.937706 GACTTCTGAATCCTGGTGTGATG 59.062 47.826 0.00 0.00 0.00 3.07
4906 5951 3.328931 ACTTCTGAATCCTGGTGTGATGT 59.671 43.478 0.00 0.00 0.00 3.06
4907 5952 4.532126 ACTTCTGAATCCTGGTGTGATGTA 59.468 41.667 0.00 0.00 0.00 2.29
4908 5953 4.743057 TCTGAATCCTGGTGTGATGTAG 57.257 45.455 0.00 0.00 0.00 2.74
4909 5954 4.096681 TCTGAATCCTGGTGTGATGTAGT 58.903 43.478 0.00 0.00 0.00 2.73
4910 5955 4.081476 TCTGAATCCTGGTGTGATGTAGTG 60.081 45.833 0.00 0.00 0.00 2.74
4911 5956 3.837731 TGAATCCTGGTGTGATGTAGTGA 59.162 43.478 0.00 0.00 0.00 3.41
4992 6045 5.402270 GTGTTGAATTGTTGATACAACCAGC 59.598 40.000 11.25 5.67 46.38 4.85
5001 6054 1.692519 GATACAACCAGCGGATACCCT 59.307 52.381 1.50 0.00 0.00 4.34
5002 6055 0.828022 TACAACCAGCGGATACCCTG 59.172 55.000 1.50 0.00 0.00 4.45
5096 6150 7.275183 TCTTCTTTCGGTTGTGATGATATGAT 58.725 34.615 0.00 0.00 0.00 2.45
5099 6153 3.059166 TCGGTTGTGATGATATGATGCG 58.941 45.455 0.00 0.00 0.00 4.73
5111 6165 4.935205 TGATATGATGCGGCTACCAAATAC 59.065 41.667 0.00 0.00 0.00 1.89
5112 6166 1.961793 TGATGCGGCTACCAAATACC 58.038 50.000 0.00 0.00 0.00 2.73
5115 6169 3.134985 TGATGCGGCTACCAAATACCTTA 59.865 43.478 0.00 0.00 0.00 2.69
5128 6182 2.973694 TACCTTATGGAGCCGTGTTC 57.026 50.000 0.81 0.00 37.04 3.18
5130 6184 1.207329 ACCTTATGGAGCCGTGTTCTC 59.793 52.381 0.81 0.00 37.04 2.87
5137 6191 0.034896 GAGCCGTGTTCTCCAAGGAA 59.965 55.000 0.00 0.00 44.67 3.36
5139 6193 1.578206 GCCGTGTTCTCCAAGGAAGC 61.578 60.000 0.00 0.00 44.67 3.86
5141 6195 1.275291 CCGTGTTCTCCAAGGAAGCTA 59.725 52.381 0.00 0.00 44.67 3.32
5149 6203 1.078823 TCCAAGGAAGCTAGAGGGTCA 59.921 52.381 0.00 0.00 0.00 4.02
5186 6240 8.095169 ACTGTACCTTTGAGTGGAAGTATTTAG 58.905 37.037 0.00 0.00 0.00 1.85
5191 6245 3.857052 TGAGTGGAAGTATTTAGTGCCG 58.143 45.455 0.00 0.00 0.00 5.69
5192 6246 2.608090 GAGTGGAAGTATTTAGTGCCGC 59.392 50.000 0.00 0.00 35.44 6.53
5201 6255 1.164411 TTTAGTGCCGCCATGTCTTG 58.836 50.000 0.00 0.00 0.00 3.02
5206 6260 1.153958 GCCGCCATGTCTTGCTTTC 60.154 57.895 0.00 0.00 0.00 2.62
5213 6267 4.666237 GCCATGTCTTGCTTTCAGTTATC 58.334 43.478 0.00 0.00 0.00 1.75
5215 6269 4.201851 CCATGTCTTGCTTTCAGTTATCGG 60.202 45.833 0.00 0.00 0.00 4.18
5224 6278 5.705441 TGCTTTCAGTTATCGGATTGAAGTT 59.295 36.000 0.00 0.00 31.85 2.66
5225 6279 6.206634 TGCTTTCAGTTATCGGATTGAAGTTT 59.793 34.615 0.00 0.00 31.85 2.66
5244 6298 4.104897 AGTTTCTCCAGCTAGGGTTTCTTT 59.895 41.667 0.00 0.00 38.24 2.52
5246 6300 2.572104 TCTCCAGCTAGGGTTTCTTTCC 59.428 50.000 0.00 0.00 38.24 3.13
5250 6304 1.366854 GCTAGGGTTTCTTTCCGCCG 61.367 60.000 0.00 0.00 0.00 6.46
5253 6307 2.038837 GGGTTTCTTTCCGCCGGAG 61.039 63.158 5.05 0.00 31.21 4.63
5254 6308 1.302271 GGTTTCTTTCCGCCGGAGT 60.302 57.895 5.05 0.00 31.21 3.85
5258 6316 1.232119 TTCTTTCCGCCGGAGTTTTC 58.768 50.000 5.05 0.00 31.21 2.29
5273 6332 1.000274 GTTTTCTTTCGGTGCAGCCAT 60.000 47.619 10.90 0.00 36.97 4.40
5282 6341 1.256812 GGTGCAGCCATGGTTTTACT 58.743 50.000 14.67 0.00 37.17 2.24
5283 6342 1.618343 GGTGCAGCCATGGTTTTACTT 59.382 47.619 14.67 0.00 37.17 2.24
5284 6343 2.037121 GGTGCAGCCATGGTTTTACTTT 59.963 45.455 14.67 0.00 37.17 2.66
5285 6344 3.059166 GTGCAGCCATGGTTTTACTTTG 58.941 45.455 14.67 0.00 0.00 2.77
5286 6345 2.068519 GCAGCCATGGTTTTACTTTGC 58.931 47.619 14.67 0.97 0.00 3.68
5287 6346 2.547642 GCAGCCATGGTTTTACTTTGCA 60.548 45.455 14.67 0.00 0.00 4.08
5288 6347 3.059166 CAGCCATGGTTTTACTTTGCAC 58.941 45.455 14.67 0.00 0.00 4.57
5289 6348 2.037121 AGCCATGGTTTTACTTTGCACC 59.963 45.455 14.67 0.00 0.00 5.01
5290 6349 2.224161 GCCATGGTTTTACTTTGCACCA 60.224 45.455 14.67 0.00 43.48 4.17
5293 6352 3.742433 TGGTTTTACTTTGCACCATGG 57.258 42.857 11.19 11.19 34.23 3.66
5294 6353 3.034635 TGGTTTTACTTTGCACCATGGT 58.965 40.909 13.00 13.00 34.23 3.55
5295 6354 3.452627 TGGTTTTACTTTGCACCATGGTT 59.547 39.130 16.84 1.46 34.23 3.67
5296 6355 4.080863 TGGTTTTACTTTGCACCATGGTTT 60.081 37.500 16.84 0.00 34.23 3.27
5297 6356 4.878971 GGTTTTACTTTGCACCATGGTTTT 59.121 37.500 16.84 0.00 0.00 2.43
5298 6357 6.049790 GGTTTTACTTTGCACCATGGTTTTA 58.950 36.000 16.84 0.90 0.00 1.52
5299 6358 6.018588 GGTTTTACTTTGCACCATGGTTTTAC 60.019 38.462 16.84 5.81 0.00 2.01
5300 6359 6.472686 TTTACTTTGCACCATGGTTTTACT 57.527 33.333 16.84 0.00 0.00 2.24
5313 6372 7.039993 ACCATGGTTTTACTTGGACAGATTAAC 60.040 37.037 13.00 0.00 38.61 2.01
5317 6376 4.895668 TTACTTGGACAGATTAACGGGT 57.104 40.909 0.00 0.00 0.00 5.28
5321 6380 3.880047 TGGACAGATTAACGGGTAGTG 57.120 47.619 0.00 0.00 0.00 2.74
5329 6388 5.125097 CAGATTAACGGGTAGTGTCTGTACT 59.875 44.000 0.00 0.00 35.12 2.73
5340 6399 0.036294 GTCTGTACTGGTTCTGGGCC 60.036 60.000 0.00 0.00 0.00 5.80
5342 6401 0.693049 CTGTACTGGTTCTGGGCCTT 59.307 55.000 4.53 0.00 0.00 4.35
5346 6405 1.145571 ACTGGTTCTGGGCCTTTGTA 58.854 50.000 4.53 0.00 0.00 2.41
5347 6406 1.710809 ACTGGTTCTGGGCCTTTGTAT 59.289 47.619 4.53 0.00 0.00 2.29
5351 6410 2.554344 GGTTCTGGGCCTTTGTATGTGA 60.554 50.000 4.53 0.00 0.00 3.58
5381 6440 2.046507 CAGCTGGCCTCAGTGACC 60.047 66.667 5.57 0.00 42.78 4.02
5389 6448 1.429463 GCCTCAGTGACCGTTAACAG 58.571 55.000 6.39 0.00 0.00 3.16
5393 6452 3.057734 CTCAGTGACCGTTAACAGAACC 58.942 50.000 6.39 0.00 0.00 3.62
5421 6480 2.029728 GCGATTTCAGACGTCCAATCTG 59.970 50.000 21.40 17.34 44.22 2.90
5427 6486 2.489722 TCAGACGTCCAATCTGAGACAG 59.510 50.000 13.01 0.00 46.01 3.51
5429 6488 2.752354 AGACGTCCAATCTGAGACAGAG 59.248 50.000 13.01 0.00 44.08 3.35
5435 6494 2.182827 CAATCTGAGACAGAGGGGTCA 58.817 52.381 7.50 0.00 44.08 4.02
5436 6495 2.770802 CAATCTGAGACAGAGGGGTCAT 59.229 50.000 7.50 0.00 44.08 3.06
5437 6496 2.151502 TCTGAGACAGAGGGGTCATC 57.848 55.000 0.00 0.00 40.29 2.92
5438 6497 1.643286 TCTGAGACAGAGGGGTCATCT 59.357 52.381 0.00 0.00 40.29 2.90
5445 6504 1.209019 CAGAGGGGTCATCTGTTCTGG 59.791 57.143 1.91 0.00 39.48 3.86
5446 6505 0.107459 GAGGGGTCATCTGTTCTGGC 60.107 60.000 0.00 0.00 0.00 4.85
5447 6506 1.077429 GGGGTCATCTGTTCTGGCC 60.077 63.158 0.00 0.00 37.67 5.36
5448 6507 1.450312 GGGTCATCTGTTCTGGCCG 60.450 63.158 0.00 0.00 39.36 6.13
5449 6508 1.450312 GGTCATCTGTTCTGGCCGG 60.450 63.158 4.71 4.71 0.00 6.13
5450 6509 1.596934 GTCATCTGTTCTGGCCGGA 59.403 57.895 11.27 11.27 0.00 5.14
5451 6510 0.036388 GTCATCTGTTCTGGCCGGAA 60.036 55.000 23.60 23.60 0.00 4.30
5452 6511 0.250234 TCATCTGTTCTGGCCGGAAG 59.750 55.000 27.73 16.86 0.00 3.46
5453 6512 0.250234 CATCTGTTCTGGCCGGAAGA 59.750 55.000 27.73 24.69 0.00 2.87
5454 6513 0.984230 ATCTGTTCTGGCCGGAAGAA 59.016 50.000 27.73 17.21 0.00 2.52
5455 6514 0.321671 TCTGTTCTGGCCGGAAGAAG 59.678 55.000 27.73 24.91 34.40 2.85
5456 6515 1.301677 CTGTTCTGGCCGGAAGAAGC 61.302 60.000 27.73 15.80 34.40 3.86
5457 6516 1.302511 GTTCTGGCCGGAAGAAGCA 60.303 57.895 27.73 1.58 34.40 3.91
5462 6521 2.476320 GGCCGGAAGAAGCATCTGC 61.476 63.158 5.05 0.00 42.49 4.26
5479 6538 4.069300 TCTGCTTGATGATCTGATGGAC 57.931 45.455 0.00 0.00 0.00 4.02
5495 6554 2.364632 TGGACAAACTTGACCTGTGTG 58.635 47.619 11.35 0.00 42.31 3.82
5496 6555 2.026729 TGGACAAACTTGACCTGTGTGA 60.027 45.455 11.35 0.00 42.31 3.58
5497 6556 2.354821 GGACAAACTTGACCTGTGTGAC 59.645 50.000 4.03 0.00 39.42 3.67
5498 6557 2.006888 ACAAACTTGACCTGTGTGACG 58.993 47.619 0.00 0.00 0.00 4.35
5499 6558 2.276201 CAAACTTGACCTGTGTGACGA 58.724 47.619 0.00 0.00 0.00 4.20
5500 6559 2.872245 CAAACTTGACCTGTGTGACGAT 59.128 45.455 0.00 0.00 0.00 3.73
5501 6560 2.154854 ACTTGACCTGTGTGACGATG 57.845 50.000 0.00 0.00 0.00 3.84
5502 6561 1.686587 ACTTGACCTGTGTGACGATGA 59.313 47.619 0.00 0.00 0.00 2.92
5503 6562 2.102420 ACTTGACCTGTGTGACGATGAA 59.898 45.455 0.00 0.00 0.00 2.57
5504 6563 2.148916 TGACCTGTGTGACGATGAAC 57.851 50.000 0.00 0.00 0.00 3.18
5505 6564 1.686587 TGACCTGTGTGACGATGAACT 59.313 47.619 0.00 0.00 0.00 3.01
5506 6565 2.102420 TGACCTGTGTGACGATGAACTT 59.898 45.455 0.00 0.00 0.00 2.66
5507 6566 3.131396 GACCTGTGTGACGATGAACTTT 58.869 45.455 0.00 0.00 0.00 2.66
5508 6567 2.872245 ACCTGTGTGACGATGAACTTTG 59.128 45.455 0.00 0.00 0.00 2.77
5520 6579 5.122869 ACGATGAACTTTGATCTTGATGTGG 59.877 40.000 0.00 0.00 0.00 4.17
5532 6591 7.099764 TGATCTTGATGTGGAAGAAGACTTAC 58.900 38.462 0.00 0.00 37.47 2.34
5533 6592 6.672266 TCTTGATGTGGAAGAAGACTTACT 57.328 37.500 0.00 0.00 37.80 2.24
5538 6597 3.058432 TGTGGAAGAAGACTTACTCGACG 60.058 47.826 0.00 0.00 37.80 5.12
5552 6611 0.821517 TCGACGCATCCTACACCATT 59.178 50.000 0.00 0.00 0.00 3.16
5580 6639 2.204463 TCCAAGATCCAACCCAGCATA 58.796 47.619 0.00 0.00 0.00 3.14
5597 6656 1.544825 ATACTGACTGCTGTGCCCGT 61.545 55.000 0.00 0.00 0.00 5.28
5598 6657 2.434658 TACTGACTGCTGTGCCCGTG 62.435 60.000 0.00 0.00 0.00 4.94
5600 6659 4.996434 GACTGCTGTGCCCGTGCT 62.996 66.667 0.00 0.00 38.71 4.40
5616 6675 1.208052 GTGCTGGGAATGTGCTCTCTA 59.792 52.381 0.00 0.00 0.00 2.43
5624 6683 1.174783 ATGTGCTCTCTACCGTTCGT 58.825 50.000 0.00 0.00 0.00 3.85
5625 6684 0.240145 TGTGCTCTCTACCGTTCGTG 59.760 55.000 0.00 0.00 0.00 4.35
5630 6689 0.803117 TCTCTACCGTTCGTGCTGAG 59.197 55.000 0.00 0.00 0.00 3.35
5648 6711 4.943705 GCTGAGTCTTTCAATATTGGACCA 59.056 41.667 15.36 12.41 34.81 4.02
5663 6726 0.827507 GACCAGGCAAACCACCACAT 60.828 55.000 0.00 0.00 39.06 3.21
5666 6729 1.272212 CCAGGCAAACCACCACATAAC 59.728 52.381 0.00 0.00 39.06 1.89
5667 6730 1.959985 CAGGCAAACCACCACATAACA 59.040 47.619 0.00 0.00 39.06 2.41
5668 6731 2.363680 CAGGCAAACCACCACATAACAA 59.636 45.455 0.00 0.00 39.06 2.83
5670 6733 3.452627 AGGCAAACCACCACATAACAAAA 59.547 39.130 0.00 0.00 39.06 2.44
5713 6776 0.457851 TTGTGGTCTTTTGTTGCGGG 59.542 50.000 0.00 0.00 0.00 6.13
5724 6787 3.634568 TTGTTGCGGGAATAGTTTGTG 57.365 42.857 0.00 0.00 0.00 3.33
5727 6790 1.816074 TGCGGGAATAGTTTGTGGTC 58.184 50.000 0.00 0.00 0.00 4.02
5738 6801 4.236527 AGTTTGTGGTCTTCAGGAGTTT 57.763 40.909 0.00 0.00 0.00 2.66
5739 6802 5.367945 AGTTTGTGGTCTTCAGGAGTTTA 57.632 39.130 0.00 0.00 0.00 2.01
5748 6811 6.958192 TGGTCTTCAGGAGTTTATAGGTTACT 59.042 38.462 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.299582 TCACCTAACCACGAAATTCGGA 59.700 45.455 19.95 0.92 45.59 4.55
1 2 2.414138 GTCACCTAACCACGAAATTCGG 59.586 50.000 19.95 8.42 45.59 4.30
3 4 2.159747 GCGTCACCTAACCACGAAATTC 60.160 50.000 0.00 0.00 35.49 2.17
5 6 1.435577 GCGTCACCTAACCACGAAAT 58.564 50.000 0.00 0.00 35.49 2.17
6 7 0.940519 CGCGTCACCTAACCACGAAA 60.941 55.000 0.00 0.00 35.49 3.46
7 8 1.372004 CGCGTCACCTAACCACGAA 60.372 57.895 0.00 0.00 35.49 3.85
8 9 2.191354 CTCGCGTCACCTAACCACGA 62.191 60.000 5.77 0.00 35.49 4.35
9 10 1.800315 CTCGCGTCACCTAACCACG 60.800 63.158 5.77 0.00 36.60 4.94
10 11 0.172803 ATCTCGCGTCACCTAACCAC 59.827 55.000 5.77 0.00 0.00 4.16
11 12 0.454600 GATCTCGCGTCACCTAACCA 59.545 55.000 5.77 0.00 0.00 3.67
12 13 0.248949 GGATCTCGCGTCACCTAACC 60.249 60.000 5.77 0.00 0.00 2.85
13 14 0.248949 GGGATCTCGCGTCACCTAAC 60.249 60.000 5.77 0.00 0.00 2.34
14 15 1.721664 CGGGATCTCGCGTCACCTAA 61.722 60.000 0.00 0.00 45.50 2.69
15 16 2.184830 CGGGATCTCGCGTCACCTA 61.185 63.158 0.00 0.00 45.50 3.08
16 17 3.518998 CGGGATCTCGCGTCACCT 61.519 66.667 0.00 0.00 45.50 4.00
25 26 4.593864 GACTGGCGGCGGGATCTC 62.594 72.222 23.06 6.57 0.00 2.75
48 49 4.710167 AACACGGGTAAGCGGGCC 62.710 66.667 0.00 0.00 0.00 5.80
49 50 2.670592 AAACACGGGTAAGCGGGC 60.671 61.111 0.00 0.00 0.00 6.13
50 51 2.329614 CCAAACACGGGTAAGCGGG 61.330 63.158 0.00 0.00 0.00 6.13
51 52 2.329614 CCCAAACACGGGTAAGCGG 61.330 63.158 0.00 0.00 41.83 5.52
52 53 2.329614 CCCCAAACACGGGTAAGCG 61.330 63.158 0.00 0.00 45.80 4.68
53 54 2.632544 GCCCCAAACACGGGTAAGC 61.633 63.158 0.00 0.00 45.80 3.09
54 55 0.325602 TAGCCCCAAACACGGGTAAG 59.674 55.000 0.00 0.00 45.80 2.34
55 56 0.325602 CTAGCCCCAAACACGGGTAA 59.674 55.000 0.00 0.00 45.80 2.85
56 57 0.544833 TCTAGCCCCAAACACGGGTA 60.545 55.000 0.00 0.00 45.80 3.69
57 58 1.838073 CTCTAGCCCCAAACACGGGT 61.838 60.000 0.00 0.00 45.80 5.28
58 59 1.078426 CTCTAGCCCCAAACACGGG 60.078 63.158 0.00 0.00 46.94 5.28
59 60 1.745489 GCTCTAGCCCCAAACACGG 60.745 63.158 0.00 0.00 34.31 4.94
60 61 0.741221 GAGCTCTAGCCCCAAACACG 60.741 60.000 6.43 0.00 43.38 4.49
61 62 0.393132 GGAGCTCTAGCCCCAAACAC 60.393 60.000 14.64 0.00 38.95 3.32
62 63 1.562672 GGGAGCTCTAGCCCCAAACA 61.563 60.000 14.64 0.00 45.24 2.83
63 64 1.224870 GGGAGCTCTAGCCCCAAAC 59.775 63.158 14.64 0.00 45.24 2.93
64 65 3.741325 GGGAGCTCTAGCCCCAAA 58.259 61.111 14.64 0.00 45.24 3.28
68 69 1.904378 CTACGGGGAGCTCTAGCCC 60.904 68.421 14.64 14.74 43.38 5.19
69 70 2.566570 GCTACGGGGAGCTCTAGCC 61.567 68.421 17.68 9.65 43.38 3.93
70 71 3.044280 GCTACGGGGAGCTCTAGC 58.956 66.667 14.64 14.68 39.50 3.42
76 77 1.153549 CTTGACAGCTACGGGGAGC 60.154 63.158 0.00 0.00 43.19 4.70
77 78 1.153549 GCTTGACAGCTACGGGGAG 60.154 63.158 0.00 0.00 43.51 4.30
78 79 2.978824 GCTTGACAGCTACGGGGA 59.021 61.111 0.00 0.00 43.51 4.81
86 87 3.967549 CACGCTAAATTGAGCTTGACAGC 60.968 47.826 14.79 0.00 42.68 4.40
87 88 3.187227 ACACGCTAAATTGAGCTTGACAG 59.813 43.478 24.31 6.01 42.68 3.51
88 89 3.058983 CACACGCTAAATTGAGCTTGACA 60.059 43.478 24.31 0.00 42.68 3.58
89 90 3.482786 CACACGCTAAATTGAGCTTGAC 58.517 45.455 24.31 0.00 42.68 3.18
90 91 2.095768 GCACACGCTAAATTGAGCTTGA 60.096 45.455 24.31 0.00 42.68 3.02
91 92 2.245096 GCACACGCTAAATTGAGCTTG 58.755 47.619 17.63 17.63 44.86 4.01
92 93 1.879380 TGCACACGCTAAATTGAGCTT 59.121 42.857 13.09 0.00 40.51 3.74
93 94 1.466167 CTGCACACGCTAAATTGAGCT 59.534 47.619 13.09 0.00 40.51 4.09
94 95 1.464608 TCTGCACACGCTAAATTGAGC 59.535 47.619 4.51 4.51 39.64 4.26
95 96 2.738846 ACTCTGCACACGCTAAATTGAG 59.261 45.455 0.00 0.00 39.64 3.02
96 97 2.766313 ACTCTGCACACGCTAAATTGA 58.234 42.857 0.00 0.00 39.64 2.57
97 98 3.542712 AACTCTGCACACGCTAAATTG 57.457 42.857 0.00 0.00 39.64 2.32
98 99 4.755123 ACTAAACTCTGCACACGCTAAATT 59.245 37.500 0.00 0.00 39.64 1.82
99 100 4.315803 ACTAAACTCTGCACACGCTAAAT 58.684 39.130 0.00 0.00 39.64 1.40
100 101 3.724374 ACTAAACTCTGCACACGCTAAA 58.276 40.909 0.00 0.00 39.64 1.85
101 102 3.380479 ACTAAACTCTGCACACGCTAA 57.620 42.857 0.00 0.00 39.64 3.09
102 103 3.380479 AACTAAACTCTGCACACGCTA 57.620 42.857 0.00 0.00 39.64 4.26
103 104 2.240493 AACTAAACTCTGCACACGCT 57.760 45.000 0.00 0.00 39.64 5.07
104 105 3.334272 AAAACTAAACTCTGCACACGC 57.666 42.857 0.00 0.00 39.24 5.34
105 106 7.908193 AAAATAAAACTAAACTCTGCACACG 57.092 32.000 0.00 0.00 0.00 4.49
166 167 1.143620 CAGGCTACAGAGAGCAGGC 59.856 63.158 0.00 0.00 44.76 4.85
260 266 1.226435 GGAGAGACACGCTACGCAG 60.226 63.158 0.00 0.00 0.00 5.18
263 269 1.550065 CATTGGAGAGACACGCTACG 58.450 55.000 0.00 0.00 0.00 3.51
330 336 0.662619 CACTGAAGCAGCACGGAAAA 59.337 50.000 0.00 0.00 34.37 2.29
331 337 0.179059 TCACTGAAGCAGCACGGAAA 60.179 50.000 0.00 0.00 34.37 3.13
335 341 0.041839 GTGTTCACTGAAGCAGCACG 60.042 55.000 0.00 0.00 34.37 5.34
382 388 8.963725 CATGTAATCATTATCATGTGGCCTAAT 58.036 33.333 3.32 0.00 34.73 1.73
384 390 7.460910 ACATGTAATCATTATCATGTGGCCTA 58.539 34.615 17.67 0.00 45.64 3.93
385 391 6.309357 ACATGTAATCATTATCATGTGGCCT 58.691 36.000 17.67 0.00 45.64 5.19
386 392 6.579666 ACATGTAATCATTATCATGTGGCC 57.420 37.500 17.67 0.00 45.64 5.36
387 393 8.355169 AGAAACATGTAATCATTATCATGTGGC 58.645 33.333 18.48 14.92 46.33 5.01
397 403 8.830580 CCAATCTCGTAGAAACATGTAATCATT 58.169 33.333 0.00 0.00 34.09 2.57
398 404 7.442364 CCCAATCTCGTAGAAACATGTAATCAT 59.558 37.037 0.00 0.00 34.09 2.45
399 405 6.761242 CCCAATCTCGTAGAAACATGTAATCA 59.239 38.462 0.00 0.00 34.09 2.57
400 406 6.292919 GCCCAATCTCGTAGAAACATGTAATC 60.293 42.308 0.00 0.56 34.09 1.75
401 407 5.527582 GCCCAATCTCGTAGAAACATGTAAT 59.472 40.000 0.00 0.00 34.09 1.89
402 408 4.873827 GCCCAATCTCGTAGAAACATGTAA 59.126 41.667 0.00 0.00 34.09 2.41
403 409 4.161565 AGCCCAATCTCGTAGAAACATGTA 59.838 41.667 0.00 0.00 34.09 2.29
404 410 3.055094 AGCCCAATCTCGTAGAAACATGT 60.055 43.478 0.00 0.00 34.09 3.21
405 411 3.310774 CAGCCCAATCTCGTAGAAACATG 59.689 47.826 0.00 0.00 34.09 3.21
406 412 3.535561 CAGCCCAATCTCGTAGAAACAT 58.464 45.455 0.00 0.00 34.09 2.71
407 413 2.354704 CCAGCCCAATCTCGTAGAAACA 60.355 50.000 0.00 0.00 34.09 2.83
408 414 2.280628 CCAGCCCAATCTCGTAGAAAC 58.719 52.381 0.00 0.00 34.09 2.78
409 415 1.906574 ACCAGCCCAATCTCGTAGAAA 59.093 47.619 0.00 0.00 34.09 2.52
410 416 1.568504 ACCAGCCCAATCTCGTAGAA 58.431 50.000 0.00 0.00 34.09 2.10
411 417 1.568504 AACCAGCCCAATCTCGTAGA 58.431 50.000 0.00 0.00 0.00 2.59
412 418 2.403252 AAACCAGCCCAATCTCGTAG 57.597 50.000 0.00 0.00 0.00 3.51
413 419 2.224670 ACAAAACCAGCCCAATCTCGTA 60.225 45.455 0.00 0.00 0.00 3.43
414 420 1.247567 CAAAACCAGCCCAATCTCGT 58.752 50.000 0.00 0.00 0.00 4.18
415 421 1.247567 ACAAAACCAGCCCAATCTCG 58.752 50.000 0.00 0.00 0.00 4.04
416 422 3.572255 TGTAACAAAACCAGCCCAATCTC 59.428 43.478 0.00 0.00 0.00 2.75
440 446 1.450312 CTGATCACCCGCCCTGTTC 60.450 63.158 0.00 0.00 0.00 3.18
445 451 0.957395 CATATGCTGATCACCCGCCC 60.957 60.000 3.24 0.00 0.00 6.13
508 535 1.152989 GCAGCTCTCCAATCTCTGCG 61.153 60.000 0.00 0.00 40.34 5.18
509 536 2.692817 GCAGCTCTCCAATCTCTGC 58.307 57.895 0.00 0.00 42.46 4.26
530 572 8.427012 CAAACATGTGCATTCAATACAGTAAAC 58.573 33.333 0.00 0.00 0.00 2.01
534 576 5.243507 TCCAAACATGTGCATTCAATACAGT 59.756 36.000 0.00 0.00 0.00 3.55
550 592 0.171007 CGGCGATGCTTTCCAAACAT 59.829 50.000 0.00 0.00 0.00 2.71
551 593 1.578926 CGGCGATGCTTTCCAAACA 59.421 52.632 0.00 0.00 0.00 2.83
570 612 2.047083 AGAGCACAGCAGCAGAGC 60.047 61.111 0.00 0.00 36.85 4.09
594 636 1.879380 TGCACGACATGAAAAGGAAGG 59.121 47.619 0.00 0.00 0.00 3.46
661 705 4.094294 TCTTCTTAACATGCCAATACGTGC 59.906 41.667 0.00 0.00 0.00 5.34
665 709 6.030228 GTGCTTCTTCTTAACATGCCAATAC 58.970 40.000 0.00 0.00 0.00 1.89
666 710 5.945784 AGTGCTTCTTCTTAACATGCCAATA 59.054 36.000 0.00 0.00 0.00 1.90
755 799 8.761497 TGACAGAAATTTAGAAAGTTGTACTCG 58.239 33.333 0.00 0.00 0.00 4.18
811 856 7.554476 AGGAAAGAGGTCATTAGTAAAGATTGC 59.446 37.037 0.00 0.00 0.00 3.56
825 870 2.426522 CGCAAATCAGGAAAGAGGTCA 58.573 47.619 0.00 0.00 0.00 4.02
912 958 0.320946 TCGGGGTTTTAACAGAGCGG 60.321 55.000 0.00 0.00 0.00 5.52
918 964 2.362717 CCAAGCTTTCGGGGTTTTAACA 59.637 45.455 0.00 0.00 0.00 2.41
965 1011 5.182001 GCACCTGACAGAAGAATGTGTTAAT 59.818 40.000 3.32 0.00 32.34 1.40
972 1018 3.181513 CGAATGCACCTGACAGAAGAATG 60.182 47.826 3.32 0.00 0.00 2.67
1047 1093 7.064490 CCAAATTTAAGTTGATCATTTTCCCCG 59.936 37.037 6.71 0.00 0.00 5.73
1166 1212 8.999431 TCTACATCTGTACATTTCCAAAACTTC 58.001 33.333 0.00 0.00 0.00 3.01
1200 1246 2.753452 ACTAGACTCACCACGTGTATGG 59.247 50.000 15.65 0.81 46.10 2.74
1209 1255 9.031537 TCTGAATATAACAAACTAGACTCACCA 57.968 33.333 0.00 0.00 0.00 4.17
1321 1367 9.853555 CACAGATTTGCTAAACATACCAATTAA 57.146 29.630 0.00 0.00 0.00 1.40
1355 1401 3.742433 AGACACCACTTCTCTGTTCTG 57.258 47.619 0.00 0.00 0.00 3.02
1430 1476 8.545420 CAAGAAGAGAAACCAAACAATCAAATG 58.455 33.333 0.00 0.00 0.00 2.32
1484 1530 5.600908 CCAAAGTTGATCATTTTTGGCAG 57.399 39.130 25.94 12.24 41.96 4.85
1530 1576 9.255304 TGCAATAACAAAACCAAAAGTATTCTC 57.745 29.630 0.00 0.00 0.00 2.87
1708 1754 3.059597 CCAGTGCCTCGATTTTATTAGCG 60.060 47.826 0.00 0.00 0.00 4.26
1804 1850 1.250328 CAAGGCTGAATGCTGGAACA 58.750 50.000 0.00 0.00 42.39 3.18
1805 1851 0.108945 GCAAGGCTGAATGCTGGAAC 60.109 55.000 2.44 0.00 42.39 3.62
1840 1886 3.559238 AAACACCGAAGAATGATGTGC 57.441 42.857 0.00 0.00 0.00 4.57
1940 1986 8.382030 TGTGATATGATGATGTAAATGGACAC 57.618 34.615 0.00 0.00 30.52 3.67
2462 2508 8.998377 GCAAGAAAAGGCTTTAAATGGAAAATA 58.002 29.630 13.77 0.00 0.00 1.40
2613 2659 4.571984 AGCTTGAACATTTGAAAGGTTTGC 59.428 37.500 9.42 13.17 0.00 3.68
2697 2746 6.219473 TCAAAGTTTTGTGCACTTTTTGAGA 58.781 32.000 19.41 4.75 41.58 3.27
2746 2802 5.394553 CCAAAAATAACATCCAAGGAGCTCC 60.395 44.000 26.22 26.22 0.00 4.70
2917 2973 6.434018 ACTATCTAGTCAAGAACCGTACAC 57.566 41.667 0.00 0.00 37.89 2.90
3059 3120 1.544314 GCATAAGATGGGAGGAGGCAC 60.544 57.143 0.00 0.00 0.00 5.01
3146 3208 7.170393 AGAAGCCCAACCTAACATTTTATTC 57.830 36.000 0.00 0.00 0.00 1.75
3315 3378 0.403655 TGCCTGTGTAGCCCAAATCA 59.596 50.000 0.00 0.00 0.00 2.57
3399 3463 2.051334 TTGCAACACAGGCTGTACTT 57.949 45.000 21.59 11.71 30.51 2.24
3465 3529 3.378427 GGCCATTCCTTGAGATAACACAC 59.622 47.826 0.00 0.00 0.00 3.82
3808 3872 4.676196 GCTGTCAACATTTGCTTATCAGGG 60.676 45.833 0.00 0.00 0.00 4.45
3870 3934 5.165961 AGCTGCAGGAGTTAAAGTAATGA 57.834 39.130 17.12 0.00 0.00 2.57
4075 4140 4.756084 ATGAGAAAACTTGAAGCTTCCG 57.244 40.909 23.42 16.24 0.00 4.30
4121 4187 8.159447 TCATGTTGAAGGCTCATAGCTAATAAT 58.841 33.333 0.00 0.00 41.99 1.28
4252 4318 1.068472 AGAAGTAACTCGGCACTCACG 60.068 52.381 0.00 0.00 0.00 4.35
4553 4619 0.864455 GCTGATTGATCGCTAGCACC 59.136 55.000 16.45 3.26 34.64 5.01
4615 4681 0.251297 CACTGGCATTCTTGTCCCCA 60.251 55.000 0.00 0.00 0.00 4.96
4630 4696 1.364626 GCGATTGTCCTCCAGCACTG 61.365 60.000 0.00 0.00 0.00 3.66
4700 4766 9.745880 ATGATCAATGTCAAAGAGAAATAATGC 57.254 29.630 0.00 0.00 0.00 3.56
4904 5949 4.345547 TCAACCCACTACAACATCACTACA 59.654 41.667 0.00 0.00 0.00 2.74
4905 5950 4.890088 TCAACCCACTACAACATCACTAC 58.110 43.478 0.00 0.00 0.00 2.73
4906 5951 4.562757 GCTCAACCCACTACAACATCACTA 60.563 45.833 0.00 0.00 0.00 2.74
4907 5952 3.807209 GCTCAACCCACTACAACATCACT 60.807 47.826 0.00 0.00 0.00 3.41
4908 5953 2.484264 GCTCAACCCACTACAACATCAC 59.516 50.000 0.00 0.00 0.00 3.06
4909 5954 2.105649 TGCTCAACCCACTACAACATCA 59.894 45.455 0.00 0.00 0.00 3.07
4910 5955 2.778299 TGCTCAACCCACTACAACATC 58.222 47.619 0.00 0.00 0.00 3.06
4911 5956 2.949177 TGCTCAACCCACTACAACAT 57.051 45.000 0.00 0.00 0.00 2.71
4992 6045 0.752658 TCACTGATGCAGGGTATCCG 59.247 55.000 0.00 0.00 36.13 4.18
5096 6150 3.472652 CATAAGGTATTTGGTAGCCGCA 58.527 45.455 0.00 0.00 0.00 5.69
5099 6153 4.072839 GCTCCATAAGGTATTTGGTAGCC 58.927 47.826 0.00 0.00 35.89 3.93
5111 6165 1.941325 GAGAACACGGCTCCATAAGG 58.059 55.000 0.00 0.00 0.00 2.69
5128 6182 1.760029 GACCCTCTAGCTTCCTTGGAG 59.240 57.143 0.00 0.00 0.00 3.86
5130 6184 1.573108 TGACCCTCTAGCTTCCTTGG 58.427 55.000 0.00 0.00 0.00 3.61
5133 6187 1.187087 CGTTGACCCTCTAGCTTCCT 58.813 55.000 0.00 0.00 0.00 3.36
5137 6191 1.104630 GCTACGTTGACCCTCTAGCT 58.895 55.000 0.00 0.00 0.00 3.32
5139 6193 0.745468 GGGCTACGTTGACCCTCTAG 59.255 60.000 11.23 0.00 40.75 2.43
5141 6195 2.348888 CGGGCTACGTTGACCCTCT 61.349 63.158 16.63 0.00 41.86 3.69
5149 6203 0.610232 AGGTACAGTCGGGCTACGTT 60.610 55.000 0.00 0.00 44.69 3.99
5186 6240 2.146073 AAAGCAAGACATGGCGGCAC 62.146 55.000 16.34 0.79 34.54 5.01
5191 6245 4.666237 GATAACTGAAAGCAAGACATGGC 58.334 43.478 0.00 0.00 37.60 4.40
5192 6246 4.201851 CCGATAACTGAAAGCAAGACATGG 60.202 45.833 0.00 0.00 37.60 3.66
5201 6255 5.803020 ACTTCAATCCGATAACTGAAAGC 57.197 39.130 0.00 0.00 37.60 3.51
5206 6260 5.874810 TGGAGAAACTTCAATCCGATAACTG 59.125 40.000 0.00 0.00 34.39 3.16
5213 6267 2.704572 AGCTGGAGAAACTTCAATCCG 58.295 47.619 0.00 0.00 34.39 4.18
5215 6269 4.195416 CCCTAGCTGGAGAAACTTCAATC 58.805 47.826 0.00 0.00 38.35 2.67
5224 6278 3.009143 GGAAAGAAACCCTAGCTGGAGAA 59.991 47.826 0.00 0.00 38.35 2.87
5225 6279 2.572104 GGAAAGAAACCCTAGCTGGAGA 59.428 50.000 0.00 0.00 38.35 3.71
5244 6298 0.947180 CGAAAGAAAACTCCGGCGGA 60.947 55.000 29.14 29.14 0.00 5.54
5246 6300 1.226030 ACCGAAAGAAAACTCCGGCG 61.226 55.000 0.00 0.00 43.56 6.46
5250 6304 1.335051 GCTGCACCGAAAGAAAACTCC 60.335 52.381 0.00 0.00 0.00 3.85
5253 6307 0.383949 TGGCTGCACCGAAAGAAAAC 59.616 50.000 0.50 0.00 43.94 2.43
5254 6308 1.000385 CATGGCTGCACCGAAAGAAAA 60.000 47.619 0.50 0.00 43.94 2.29
5258 6316 1.526575 AACCATGGCTGCACCGAAAG 61.527 55.000 13.04 0.00 43.94 2.62
5273 6332 3.034635 ACCATGGTGCAAAGTAAAACCA 58.965 40.909 18.99 0.00 46.26 3.67
5282 6341 3.706594 TCCAAGTAAAACCATGGTGCAAA 59.293 39.130 20.60 1.35 34.50 3.68
5283 6342 3.068873 GTCCAAGTAAAACCATGGTGCAA 59.931 43.478 20.60 3.41 34.50 4.08
5284 6343 2.625790 GTCCAAGTAAAACCATGGTGCA 59.374 45.455 20.60 3.41 34.50 4.57
5285 6344 2.625790 TGTCCAAGTAAAACCATGGTGC 59.374 45.455 20.60 9.43 34.50 5.01
5286 6345 4.141287 TCTGTCCAAGTAAAACCATGGTG 58.859 43.478 20.60 3.43 34.50 4.17
5287 6346 4.447138 TCTGTCCAAGTAAAACCATGGT 57.553 40.909 13.00 13.00 34.50 3.55
5288 6347 5.982890 AATCTGTCCAAGTAAAACCATGG 57.017 39.130 11.19 11.19 0.00 3.66
5289 6348 7.021196 CGTTAATCTGTCCAAGTAAAACCATG 58.979 38.462 0.00 0.00 0.00 3.66
5290 6349 6.150474 CCGTTAATCTGTCCAAGTAAAACCAT 59.850 38.462 0.00 0.00 0.00 3.55
5291 6350 5.470777 CCGTTAATCTGTCCAAGTAAAACCA 59.529 40.000 0.00 0.00 0.00 3.67
5292 6351 5.106436 CCCGTTAATCTGTCCAAGTAAAACC 60.106 44.000 0.00 0.00 0.00 3.27
5293 6352 5.471116 ACCCGTTAATCTGTCCAAGTAAAAC 59.529 40.000 0.00 0.00 0.00 2.43
5294 6353 5.623169 ACCCGTTAATCTGTCCAAGTAAAA 58.377 37.500 0.00 0.00 0.00 1.52
5295 6354 5.231702 ACCCGTTAATCTGTCCAAGTAAA 57.768 39.130 0.00 0.00 0.00 2.01
5296 6355 4.895668 ACCCGTTAATCTGTCCAAGTAA 57.104 40.909 0.00 0.00 0.00 2.24
5297 6356 5.018809 ACTACCCGTTAATCTGTCCAAGTA 58.981 41.667 0.00 0.00 0.00 2.24
5298 6357 3.836562 ACTACCCGTTAATCTGTCCAAGT 59.163 43.478 0.00 0.00 0.00 3.16
5299 6358 4.181578 CACTACCCGTTAATCTGTCCAAG 58.818 47.826 0.00 0.00 0.00 3.61
5300 6359 3.579586 ACACTACCCGTTAATCTGTCCAA 59.420 43.478 0.00 0.00 0.00 3.53
5313 6372 1.542492 ACCAGTACAGACACTACCCG 58.458 55.000 0.00 0.00 0.00 5.28
5317 6376 3.162666 CCCAGAACCAGTACAGACACTA 58.837 50.000 0.00 0.00 0.00 2.74
5321 6380 0.036294 GGCCCAGAACCAGTACAGAC 60.036 60.000 0.00 0.00 0.00 3.51
5329 6388 1.427368 ACATACAAAGGCCCAGAACCA 59.573 47.619 0.00 0.00 0.00 3.67
5340 6399 6.093082 TGAAGCAGATCACATCACATACAAAG 59.907 38.462 0.00 0.00 0.00 2.77
5342 6401 5.490159 TGAAGCAGATCACATCACATACAA 58.510 37.500 0.00 0.00 0.00 2.41
5346 6405 2.943690 GCTGAAGCAGATCACATCACAT 59.056 45.455 0.00 0.00 41.59 3.21
5347 6406 2.027469 AGCTGAAGCAGATCACATCACA 60.027 45.455 4.90 0.00 45.16 3.58
5351 6410 2.017623 GCCAGCTGAAGCAGATCACAT 61.018 52.381 17.39 0.00 45.16 3.21
5381 6440 4.171005 TCGCAATCTAGGTTCTGTTAACG 58.829 43.478 0.26 0.00 0.00 3.18
5389 6448 4.026475 CGTCTGAAATCGCAATCTAGGTTC 60.026 45.833 0.00 0.00 0.00 3.62
5393 6452 3.487574 GGACGTCTGAAATCGCAATCTAG 59.512 47.826 16.46 0.00 0.00 2.43
5427 6486 0.107459 GCCAGAACAGATGACCCCTC 60.107 60.000 0.00 0.00 0.00 4.30
5429 6488 1.077429 GGCCAGAACAGATGACCCC 60.077 63.158 0.00 0.00 0.00 4.95
5435 6494 0.984230 TTCTTCCGGCCAGAACAGAT 59.016 50.000 2.24 0.00 0.00 2.90
5436 6495 0.321671 CTTCTTCCGGCCAGAACAGA 59.678 55.000 2.24 0.00 0.00 3.41
5437 6496 1.301677 GCTTCTTCCGGCCAGAACAG 61.302 60.000 2.24 1.01 0.00 3.16
5438 6497 1.302511 GCTTCTTCCGGCCAGAACA 60.303 57.895 2.24 0.00 0.00 3.18
5440 6499 0.392998 GATGCTTCTTCCGGCCAGAA 60.393 55.000 13.54 13.54 0.00 3.02
5441 6500 1.221840 GATGCTTCTTCCGGCCAGA 59.778 57.895 2.24 0.00 0.00 3.86
5442 6501 1.094073 CAGATGCTTCTTCCGGCCAG 61.094 60.000 2.24 0.00 0.00 4.85
5443 6502 1.078214 CAGATGCTTCTTCCGGCCA 60.078 57.895 2.24 0.00 0.00 5.36
5445 6504 3.105659 GCAGATGCTTCTTCCGGC 58.894 61.111 0.00 0.00 38.21 6.13
5457 6516 4.102681 TGTCCATCAGATCATCAAGCAGAT 59.897 41.667 0.00 0.00 37.48 2.90
5462 6521 6.373495 TCAAGTTTGTCCATCAGATCATCAAG 59.627 38.462 0.00 0.00 0.00 3.02
5464 6523 5.645067 GTCAAGTTTGTCCATCAGATCATCA 59.355 40.000 0.00 0.00 0.00 3.07
5472 6531 3.213506 CACAGGTCAAGTTTGTCCATCA 58.786 45.455 10.08 0.00 38.59 3.07
5473 6532 3.003689 CACACAGGTCAAGTTTGTCCATC 59.996 47.826 10.08 0.00 38.59 3.51
5479 6538 2.276201 TCGTCACACAGGTCAAGTTTG 58.724 47.619 0.00 0.00 0.00 2.93
5495 6554 6.246449 CACATCAAGATCAAAGTTCATCGTC 58.754 40.000 0.00 0.00 0.00 4.20
5496 6555 5.122869 CCACATCAAGATCAAAGTTCATCGT 59.877 40.000 0.00 0.00 0.00 3.73
5497 6556 5.352293 TCCACATCAAGATCAAAGTTCATCG 59.648 40.000 0.00 0.00 0.00 3.84
5498 6557 6.748333 TCCACATCAAGATCAAAGTTCATC 57.252 37.500 0.00 0.00 0.00 2.92
5499 6558 6.944290 TCTTCCACATCAAGATCAAAGTTCAT 59.056 34.615 0.00 0.00 0.00 2.57
5500 6559 6.298361 TCTTCCACATCAAGATCAAAGTTCA 58.702 36.000 0.00 0.00 0.00 3.18
5501 6560 6.808008 TCTTCCACATCAAGATCAAAGTTC 57.192 37.500 0.00 0.00 0.00 3.01
5502 6561 7.000472 TCTTCTTCCACATCAAGATCAAAGTT 59.000 34.615 0.00 0.00 29.89 2.66
5503 6562 6.429385 GTCTTCTTCCACATCAAGATCAAAGT 59.571 38.462 0.00 0.00 29.89 2.66
5504 6563 6.654161 AGTCTTCTTCCACATCAAGATCAAAG 59.346 38.462 0.00 0.00 29.89 2.77
5505 6564 6.537355 AGTCTTCTTCCACATCAAGATCAAA 58.463 36.000 0.00 0.00 29.89 2.69
5506 6565 6.119240 AGTCTTCTTCCACATCAAGATCAA 57.881 37.500 0.00 0.00 29.89 2.57
5507 6566 5.752036 AGTCTTCTTCCACATCAAGATCA 57.248 39.130 0.00 0.00 29.89 2.92
5508 6567 7.327214 AGTAAGTCTTCTTCCACATCAAGATC 58.673 38.462 0.00 0.00 35.36 2.75
5520 6579 3.198863 TGCGTCGAGTAAGTCTTCTTC 57.801 47.619 0.00 0.00 35.36 2.87
5532 6591 0.385751 ATGGTGTAGGATGCGTCGAG 59.614 55.000 0.00 0.00 0.00 4.04
5533 6592 0.821517 AATGGTGTAGGATGCGTCGA 59.178 50.000 0.00 0.00 0.00 4.20
5538 6597 2.222027 GTAGCCAATGGTGTAGGATGC 58.778 52.381 0.00 0.00 0.00 3.91
5552 6611 2.092429 GGTTGGATCTTGGATGTAGCCA 60.092 50.000 0.00 0.00 35.78 4.75
5564 6623 2.171448 GTCAGTATGCTGGGTTGGATCT 59.829 50.000 11.15 0.00 42.78 2.75
5565 6624 2.171448 AGTCAGTATGCTGGGTTGGATC 59.829 50.000 11.15 0.00 42.78 3.36
5566 6625 2.092753 CAGTCAGTATGCTGGGTTGGAT 60.093 50.000 11.15 0.00 42.78 3.41
5567 6626 1.278985 CAGTCAGTATGCTGGGTTGGA 59.721 52.381 11.15 0.00 42.78 3.53
5568 6627 1.742761 CAGTCAGTATGCTGGGTTGG 58.257 55.000 11.15 0.00 42.78 3.77
5569 6628 1.089920 GCAGTCAGTATGCTGGGTTG 58.910 55.000 11.15 8.08 42.78 3.77
5570 6629 3.558674 GCAGTCAGTATGCTGGGTT 57.441 52.632 11.15 0.00 42.78 4.11
5580 6639 3.550431 ACGGGCACAGCAGTCAGT 61.550 61.111 0.00 0.00 0.00 3.41
5597 6656 1.208052 GTAGAGAGCACATTCCCAGCA 59.792 52.381 0.00 0.00 0.00 4.41
5598 6657 1.474143 GGTAGAGAGCACATTCCCAGC 60.474 57.143 0.00 0.00 0.00 4.85
5599 6658 1.202463 CGGTAGAGAGCACATTCCCAG 60.202 57.143 0.00 0.00 0.00 4.45
5600 6659 0.824109 CGGTAGAGAGCACATTCCCA 59.176 55.000 0.00 0.00 0.00 4.37
5601 6660 0.824759 ACGGTAGAGAGCACATTCCC 59.175 55.000 0.00 0.00 0.00 3.97
5602 6661 2.541556 GAACGGTAGAGAGCACATTCC 58.458 52.381 0.00 0.00 0.00 3.01
5606 6665 0.240145 CACGAACGGTAGAGAGCACA 59.760 55.000 0.00 0.00 0.00 4.57
5616 6675 0.104304 AAAGACTCAGCACGAACGGT 59.896 50.000 0.00 0.00 0.00 4.83
5624 6683 4.943705 GGTCCAATATTGAAAGACTCAGCA 59.056 41.667 17.23 0.00 34.81 4.41
5625 6684 4.943705 TGGTCCAATATTGAAAGACTCAGC 59.056 41.667 17.23 4.29 34.81 4.26
5630 6689 4.016444 TGCCTGGTCCAATATTGAAAGAC 58.984 43.478 17.23 14.38 0.00 3.01
5648 6711 2.373335 TGTTATGTGGTGGTTTGCCT 57.627 45.000 0.00 0.00 35.27 4.75
5687 6750 6.378582 CGCAACAAAAGACCACAAACTATAT 58.621 36.000 0.00 0.00 0.00 0.86
5692 6755 1.923864 CCGCAACAAAAGACCACAAAC 59.076 47.619 0.00 0.00 0.00 2.93
5694 6757 0.457851 CCCGCAACAAAAGACCACAA 59.542 50.000 0.00 0.00 0.00 3.33
5698 6761 2.817844 ACTATTCCCGCAACAAAAGACC 59.182 45.455 0.00 0.00 0.00 3.85
5699 6762 4.499037 AACTATTCCCGCAACAAAAGAC 57.501 40.909 0.00 0.00 0.00 3.01
5700 6763 4.339814 ACAAACTATTCCCGCAACAAAAGA 59.660 37.500 0.00 0.00 0.00 2.52
5701 6764 4.444056 CACAAACTATTCCCGCAACAAAAG 59.556 41.667 0.00 0.00 0.00 2.27
5706 6769 1.883926 ACCACAAACTATTCCCGCAAC 59.116 47.619 0.00 0.00 0.00 4.17
5708 6771 1.349688 AGACCACAAACTATTCCCGCA 59.650 47.619 0.00 0.00 0.00 5.69
5713 6776 5.552178 ACTCCTGAAGACCACAAACTATTC 58.448 41.667 0.00 0.00 0.00 1.75
5724 6787 7.421087 AGTAACCTATAAACTCCTGAAGACC 57.579 40.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.