Multiple sequence alignment - TraesCS7B01G411500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G411500 | chr7B | 100.000 | 6768 | 0 | 0 | 1 | 6768 | 680065614 | 680072381 | 0.000000e+00 | 12499.0 |
1 | TraesCS7B01G411500 | chr7B | 91.552 | 1018 | 48 | 18 | 5220 | 6213 | 707830915 | 707831918 | 0.000000e+00 | 1369.0 |
2 | TraesCS7B01G411500 | chr7B | 96.868 | 479 | 12 | 2 | 3921 | 4399 | 707826500 | 707826975 | 0.000000e+00 | 798.0 |
3 | TraesCS7B01G411500 | chr7B | 95.815 | 454 | 16 | 1 | 3209 | 3662 | 707826051 | 707826501 | 0.000000e+00 | 730.0 |
4 | TraesCS7B01G411500 | chr7B | 91.362 | 301 | 15 | 5 | 4945 | 5235 | 707830595 | 707830894 | 1.060000e-107 | 401.0 |
5 | TraesCS7B01G411500 | chr7B | 96.296 | 243 | 8 | 1 | 4531 | 4772 | 707827395 | 707827637 | 1.370000e-106 | 398.0 |
6 | TraesCS7B01G411500 | chr7B | 86.381 | 257 | 35 | 0 | 6260 | 6516 | 707875961 | 707876217 | 1.440000e-71 | 281.0 |
7 | TraesCS7B01G411500 | chr7B | 98.529 | 136 | 2 | 0 | 4397 | 4532 | 707827136 | 707827271 | 2.440000e-59 | 241.0 |
8 | TraesCS7B01G411500 | chr7B | 88.649 | 185 | 4 | 5 | 4766 | 4950 | 707827974 | 707828141 | 6.880000e-50 | 209.0 |
9 | TraesCS7B01G411500 | chr7B | 79.032 | 124 | 15 | 8 | 5743 | 5860 | 707867684 | 707867802 | 2.620000e-09 | 75.0 |
10 | TraesCS7B01G411500 | chr7D | 95.652 | 3266 | 96 | 17 | 424 | 3662 | 600855999 | 600859245 | 0.000000e+00 | 5203.0 |
11 | TraesCS7B01G411500 | chr7D | 94.690 | 2373 | 74 | 21 | 3921 | 6261 | 600859244 | 600861596 | 0.000000e+00 | 3637.0 |
12 | TraesCS7B01G411500 | chr7D | 93.774 | 514 | 28 | 1 | 1 | 514 | 600855525 | 600856034 | 0.000000e+00 | 769.0 |
13 | TraesCS7B01G411500 | chr7D | 91.729 | 266 | 22 | 0 | 3659 | 3924 | 215783330 | 215783595 | 2.980000e-98 | 370.0 |
14 | TraesCS7B01G411500 | chr7D | 83.333 | 222 | 28 | 6 | 6514 | 6730 | 600861825 | 600862042 | 5.350000e-46 | 196.0 |
15 | TraesCS7B01G411500 | chr7D | 80.612 | 98 | 16 | 3 | 6354 | 6450 | 2404910 | 2404815 | 9.420000e-09 | 73.1 |
16 | TraesCS7B01G411500 | chr7A | 92.612 | 2626 | 123 | 28 | 3921 | 6518 | 692780701 | 692783283 | 0.000000e+00 | 3709.0 |
17 | TraesCS7B01G411500 | chr7A | 94.515 | 1659 | 64 | 7 | 696 | 2345 | 692777680 | 692779320 | 0.000000e+00 | 2534.0 |
18 | TraesCS7B01G411500 | chr7A | 94.990 | 1018 | 29 | 4 | 2389 | 3386 | 692779317 | 692780332 | 0.000000e+00 | 1578.0 |
19 | TraesCS7B01G411500 | chr7A | 98.897 | 272 | 3 | 0 | 3391 | 3662 | 692780431 | 692780702 | 2.840000e-133 | 486.0 |
20 | TraesCS7B01G411500 | chr7A | 92.481 | 266 | 19 | 1 | 3657 | 3922 | 646560450 | 646560186 | 4.950000e-101 | 379.0 |
21 | TraesCS7B01G411500 | chr7A | 77.526 | 485 | 101 | 7 | 4 | 483 | 271867177 | 271866696 | 1.110000e-72 | 285.0 |
22 | TraesCS7B01G411500 | chr7A | 80.612 | 98 | 17 | 2 | 6354 | 6450 | 3766155 | 3766059 | 2.620000e-09 | 75.0 |
23 | TraesCS7B01G411500 | chr1D | 83.811 | 488 | 72 | 5 | 1 | 483 | 202173817 | 202174302 | 2.220000e-124 | 457.0 |
24 | TraesCS7B01G411500 | chr1D | 81.818 | 286 | 36 | 10 | 546 | 824 | 47655550 | 47655274 | 6.830000e-55 | 226.0 |
25 | TraesCS7B01G411500 | chr1D | 79.936 | 314 | 51 | 7 | 528 | 839 | 274475515 | 274475212 | 3.180000e-53 | 220.0 |
26 | TraesCS7B01G411500 | chr1D | 81.915 | 94 | 17 | 0 | 6348 | 6441 | 174777621 | 174777714 | 5.630000e-11 | 80.5 |
27 | TraesCS7B01G411500 | chr3B | 92.075 | 265 | 20 | 1 | 3661 | 3925 | 653096160 | 653096423 | 8.290000e-99 | 372.0 |
28 | TraesCS7B01G411500 | chr3B | 78.307 | 378 | 61 | 16 | 528 | 897 | 448581189 | 448581553 | 2.460000e-54 | 224.0 |
29 | TraesCS7B01G411500 | chr6D | 91.353 | 266 | 23 | 0 | 3660 | 3925 | 108674170 | 108673905 | 1.390000e-96 | 364.0 |
30 | TraesCS7B01G411500 | chr6D | 76.078 | 255 | 47 | 8 | 6520 | 6766 | 434774729 | 434774481 | 3.320000e-23 | 121.0 |
31 | TraesCS7B01G411500 | chrUn | 91.635 | 263 | 21 | 1 | 3661 | 3923 | 199053236 | 199052975 | 4.990000e-96 | 363.0 |
32 | TraesCS7B01G411500 | chrUn | 91.635 | 263 | 21 | 1 | 3661 | 3923 | 381236044 | 381236305 | 4.990000e-96 | 363.0 |
33 | TraesCS7B01G411500 | chrUn | 91.635 | 263 | 21 | 1 | 3661 | 3923 | 383354863 | 383355124 | 4.990000e-96 | 363.0 |
34 | TraesCS7B01G411500 | chrUn | 77.152 | 302 | 53 | 12 | 528 | 826 | 23538492 | 23538204 | 1.950000e-35 | 161.0 |
35 | TraesCS7B01G411500 | chrUn | 82.022 | 89 | 14 | 2 | 6354 | 6441 | 35058134 | 35058221 | 2.620000e-09 | 75.0 |
36 | TraesCS7B01G411500 | chr6B | 91.635 | 263 | 21 | 1 | 3661 | 3923 | 4357365 | 4357626 | 4.990000e-96 | 363.0 |
37 | TraesCS7B01G411500 | chr6B | 80.995 | 221 | 39 | 3 | 669 | 887 | 698404236 | 698404455 | 9.020000e-39 | 172.0 |
38 | TraesCS7B01G411500 | chr4D | 91.045 | 268 | 22 | 2 | 3660 | 3926 | 275616494 | 275616760 | 1.790000e-95 | 361.0 |
39 | TraesCS7B01G411500 | chr6A | 83.582 | 335 | 49 | 6 | 5 | 336 | 316550203 | 316549872 | 6.590000e-80 | 309.0 |
40 | TraesCS7B01G411500 | chr3D | 85.612 | 278 | 38 | 2 | 1090 | 1366 | 416200409 | 416200685 | 2.390000e-74 | 291.0 |
41 | TraesCS7B01G411500 | chr3D | 77.297 | 370 | 65 | 14 | 528 | 887 | 113523217 | 113522857 | 4.140000e-47 | 200.0 |
42 | TraesCS7B01G411500 | chr3D | 80.894 | 246 | 42 | 5 | 654 | 897 | 349646015 | 349646257 | 8.960000e-44 | 189.0 |
43 | TraesCS7B01G411500 | chr1A | 81.350 | 311 | 47 | 7 | 528 | 835 | 590617839 | 590617537 | 6.780000e-60 | 243.0 |
44 | TraesCS7B01G411500 | chr2D | 78.862 | 369 | 63 | 10 | 529 | 892 | 523743293 | 523742935 | 1.130000e-57 | 235.0 |
45 | TraesCS7B01G411500 | chr5D | 76.794 | 418 | 84 | 8 | 3 | 412 | 413029137 | 413029549 | 8.830000e-54 | 222.0 |
46 | TraesCS7B01G411500 | chr5D | 84.146 | 82 | 10 | 1 | 1080 | 1161 | 88184944 | 88184866 | 7.280000e-10 | 76.8 |
47 | TraesCS7B01G411500 | chr4A | 80.000 | 315 | 49 | 11 | 528 | 838 | 708946678 | 708946374 | 3.180000e-53 | 220.0 |
48 | TraesCS7B01G411500 | chr4A | 77.097 | 310 | 57 | 11 | 528 | 833 | 705898614 | 705898315 | 4.200000e-37 | 167.0 |
49 | TraesCS7B01G411500 | chr4A | 82.222 | 90 | 13 | 3 | 6355 | 6441 | 518935384 | 518935295 | 2.620000e-09 | 75.0 |
50 | TraesCS7B01G411500 | chr5B | 77.112 | 367 | 64 | 15 | 528 | 887 | 674509514 | 674509867 | 1.930000e-45 | 195.0 |
51 | TraesCS7B01G411500 | chr5A | 80.162 | 247 | 36 | 9 | 583 | 825 | 272127083 | 272126846 | 9.020000e-39 | 172.0 |
52 | TraesCS7B01G411500 | chr2A | 82.424 | 165 | 27 | 2 | 722 | 885 | 15481491 | 15481328 | 7.080000e-30 | 143.0 |
53 | TraesCS7B01G411500 | chr2A | 81.818 | 88 | 16 | 0 | 6354 | 6441 | 695175490 | 695175577 | 2.620000e-09 | 75.0 |
54 | TraesCS7B01G411500 | chr4B | 75.578 | 303 | 54 | 16 | 528 | 827 | 607639013 | 607638728 | 1.530000e-26 | 132.0 |
55 | TraesCS7B01G411500 | chr4B | 81.633 | 98 | 16 | 2 | 6354 | 6450 | 595288510 | 595288414 | 5.630000e-11 | 80.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G411500 | chr7B | 680065614 | 680072381 | 6767 | False | 12499.000000 | 12499 | 100.00000 | 1 | 6768 | 1 | chr7B.!!$F1 | 6767 |
1 | TraesCS7B01G411500 | chr7B | 707826051 | 707831918 | 5867 | False | 592.285714 | 1369 | 94.15300 | 3209 | 6213 | 7 | chr7B.!!$F4 | 3004 |
2 | TraesCS7B01G411500 | chr7D | 600855525 | 600862042 | 6517 | False | 2451.250000 | 5203 | 91.86225 | 1 | 6730 | 4 | chr7D.!!$F2 | 6729 |
3 | TraesCS7B01G411500 | chr7A | 692777680 | 692783283 | 5603 | False | 2076.750000 | 3709 | 95.25350 | 696 | 6518 | 4 | chr7A.!!$F1 | 5822 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
769 | 827 | 1.161563 | TTGTCTTCGGTTTGCGGGAC | 61.162 | 55.000 | 0.00 | 0.0 | 0.0 | 4.46 | F |
844 | 902 | 1.517257 | CGATCCGGACAGTGCAGTC | 60.517 | 63.158 | 6.12 | 0.0 | 37.8 | 3.51 | F |
1912 | 1980 | 1.599797 | CGGGAACAAGGAGCGGTTT | 60.600 | 57.895 | 0.00 | 0.0 | 0.0 | 3.27 | F |
2228 | 2297 | 1.299468 | CATCGACTGCCGCTAGGTC | 60.299 | 63.158 | 0.00 | 0.0 | 40.5 | 3.85 | F |
3660 | 3847 | 1.406887 | CCCAGGTCACCGAATCGAAAT | 60.407 | 52.381 | 3.36 | 0.0 | 0.0 | 2.17 | F |
5548 | 8872 | 0.249489 | GCATCGTCTTCCCGTAGCAT | 60.249 | 55.000 | 0.00 | 0.0 | 0.0 | 3.79 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2068 | 2136 | 2.291800 | ACTTGCCTTACCCATGAATGCT | 60.292 | 45.455 | 0.00 | 0.0 | 0.00 | 3.79 | R |
2071 | 2139 | 3.737559 | TCACTTGCCTTACCCATGAAT | 57.262 | 42.857 | 0.00 | 0.0 | 0.00 | 2.57 | R |
3691 | 3878 | 0.736053 | GTTGACTTGCACGGAAACCA | 59.264 | 50.000 | 0.00 | 0.0 | 0.00 | 3.67 | R |
3695 | 3882 | 1.745232 | AGTTGTTGACTTGCACGGAA | 58.255 | 45.000 | 0.00 | 0.0 | 33.92 | 4.30 | R |
5584 | 8908 | 0.179181 | AAGCGCAAATGAGATGCACG | 60.179 | 50.000 | 11.47 | 0.0 | 44.01 | 5.34 | R |
6721 | 10106 | 0.114168 | CCATTCCCCACACTTTCCCA | 59.886 | 55.000 | 0.00 | 0.0 | 0.00 | 4.37 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 3.541632 | TCCGAGGAAATTGTTGCTATCC | 58.458 | 45.455 | 0.00 | 0.00 | 35.21 | 2.59 |
26 | 27 | 5.134725 | AGGAAATTGTTGCTATCCCTGAT | 57.865 | 39.130 | 0.00 | 0.00 | 32.93 | 2.90 |
134 | 135 | 8.203681 | AGAAGTCTATACTACACAAAAACCCT | 57.796 | 34.615 | 0.00 | 0.00 | 33.75 | 4.34 |
169 | 170 | 5.337578 | TTGGGTTTTGAAAGGAAACTCAG | 57.662 | 39.130 | 2.97 | 0.00 | 45.28 | 3.35 |
175 | 176 | 2.912771 | TGAAAGGAAACTCAGCGTTGA | 58.087 | 42.857 | 0.88 | 0.88 | 42.68 | 3.18 |
223 | 224 | 6.763715 | ATATCCTCATACAAGCTGGGTTTA | 57.236 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
236 | 237 | 3.797184 | GCTGGGTTTATGCGACAAACAAA | 60.797 | 43.478 | 9.09 | 0.00 | 37.57 | 2.83 |
237 | 238 | 4.363999 | CTGGGTTTATGCGACAAACAAAA | 58.636 | 39.130 | 9.09 | 0.00 | 37.57 | 2.44 |
238 | 239 | 4.113354 | TGGGTTTATGCGACAAACAAAAC | 58.887 | 39.130 | 9.09 | 0.00 | 37.57 | 2.43 |
239 | 240 | 3.491639 | GGGTTTATGCGACAAACAAAACC | 59.508 | 43.478 | 6.29 | 6.29 | 43.20 | 3.27 |
270 | 271 | 2.802816 | GCATGACTGTCCGGTTATGATC | 59.197 | 50.000 | 13.45 | 0.00 | 35.93 | 2.92 |
274 | 275 | 1.822990 | ACTGTCCGGTTATGATCGTGT | 59.177 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
280 | 281 | 2.223947 | CCGGTTATGATCGTGTCATCCA | 60.224 | 50.000 | 8.86 | 0.00 | 44.23 | 3.41 |
347 | 348 | 9.883142 | TTCAAACAACAAAATCATTAGGTTTCT | 57.117 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
411 | 412 | 6.438425 | AGAAGCATATTTGGGTGAAGAAATGT | 59.562 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
413 | 414 | 7.008021 | AGCATATTTGGGTGAAGAAATGTTT | 57.992 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
420 | 421 | 8.885494 | TTTGGGTGAAGAAATGTTTCATTAAG | 57.115 | 30.769 | 8.09 | 0.00 | 39.61 | 1.85 |
558 | 615 | 1.368345 | CGCTGATTCAATGGCGGACA | 61.368 | 55.000 | 10.06 | 0.00 | 43.25 | 4.02 |
562 | 619 | 2.228582 | CTGATTCAATGGCGGACAACAA | 59.771 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
564 | 621 | 4.013050 | TGATTCAATGGCGGACAACAATA | 58.987 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
580 | 637 | 2.624437 | AATAAGAGGTCGCGTCCGCC | 62.624 | 60.000 | 20.86 | 14.56 | 37.98 | 6.13 |
604 | 661 | 1.741401 | CGCCTTCAATGTGGAGCGA | 60.741 | 57.895 | 0.00 | 0.00 | 46.03 | 4.93 |
606 | 663 | 1.970917 | GCCTTCAATGTGGAGCGACG | 61.971 | 60.000 | 0.00 | 0.00 | 0.00 | 5.12 |
625 | 682 | 1.202200 | CGCGCTCTATAGGCTACATCC | 60.202 | 57.143 | 5.56 | 0.00 | 0.00 | 3.51 |
697 | 754 | 1.304962 | GGTTTTAGGTGGGCCAGGG | 60.305 | 63.158 | 6.40 | 0.00 | 37.19 | 4.45 |
769 | 827 | 1.161563 | TTGTCTTCGGTTTGCGGGAC | 61.162 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
811 | 869 | 2.125961 | GGACCGATACAGGACCGCT | 61.126 | 63.158 | 0.00 | 0.00 | 36.47 | 5.52 |
844 | 902 | 1.517257 | CGATCCGGACAGTGCAGTC | 60.517 | 63.158 | 6.12 | 0.00 | 37.80 | 3.51 |
857 | 915 | 1.672356 | GCAGTCCAGATGGTTGCGT | 60.672 | 57.895 | 12.79 | 0.00 | 37.22 | 5.24 |
867 | 925 | 2.147958 | GATGGTTGCGTGAGGTTTACA | 58.852 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
885 | 944 | 2.514824 | GGTCGCCTTGGAGATGCC | 60.515 | 66.667 | 0.00 | 0.00 | 37.10 | 4.40 |
887 | 946 | 3.797353 | TCGCCTTGGAGATGCCCC | 61.797 | 66.667 | 0.00 | 0.00 | 34.97 | 5.80 |
944 | 1003 | 4.584029 | AAACAATCAGCACGAATCTACG | 57.416 | 40.909 | 0.00 | 0.00 | 39.31 | 3.51 |
1870 | 1938 | 1.807742 | CTCGAGAACCTCTTCGACTGT | 59.192 | 52.381 | 6.58 | 0.00 | 0.00 | 3.55 |
1912 | 1980 | 1.599797 | CGGGAACAAGGAGCGGTTT | 60.600 | 57.895 | 0.00 | 0.00 | 0.00 | 3.27 |
2123 | 2191 | 4.160252 | TGCTCCATTCCTTCTTATTTTGGC | 59.840 | 41.667 | 0.00 | 0.00 | 0.00 | 4.52 |
2228 | 2297 | 1.299468 | CATCGACTGCCGCTAGGTC | 60.299 | 63.158 | 0.00 | 0.00 | 40.50 | 3.85 |
2232 | 2301 | 1.522569 | GACTGCCGCTAGGTCCATT | 59.477 | 57.895 | 0.00 | 0.00 | 40.50 | 3.16 |
2465 | 2536 | 6.294361 | TCTGCCACAGTAACATACATAACT | 57.706 | 37.500 | 0.00 | 0.00 | 32.61 | 2.24 |
2573 | 2645 | 9.474313 | TCTTTGTTTGAAACTGGCCTATATTAT | 57.526 | 29.630 | 9.69 | 0.00 | 0.00 | 1.28 |
2626 | 2698 | 3.800261 | GCTCCTTGCCTTGTTCCTTTTTC | 60.800 | 47.826 | 0.00 | 0.00 | 35.15 | 2.29 |
2633 | 2705 | 5.010282 | TGCCTTGTTCCTTTTTCCTATCTC | 58.990 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
2735 | 2807 | 6.192970 | ACTGCTGCTAGGTCCATTATAAAT | 57.807 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2740 | 2812 | 9.586732 | TGCTGCTAGGTCCATTATAAATTTTAT | 57.413 | 29.630 | 0.00 | 6.85 | 0.00 | 1.40 |
2906 | 2979 | 1.680735 | TGTGACAATGGCTGGTTGTTC | 59.319 | 47.619 | 5.29 | 3.90 | 39.72 | 3.18 |
2935 | 3008 | 6.045955 | GCTTCATGTTTTGTCCCTTTTGTTA | 58.954 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2936 | 3009 | 6.705825 | GCTTCATGTTTTGTCCCTTTTGTTAT | 59.294 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
2937 | 3010 | 7.870445 | GCTTCATGTTTTGTCCCTTTTGTTATA | 59.130 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
3100 | 3190 | 9.393249 | CTTAATTCGCAATTTTAACTTGAGACA | 57.607 | 29.630 | 1.54 | 0.00 | 33.13 | 3.41 |
3295 | 3387 | 5.420725 | ACACTGCTGTTCTGGATTGTATA | 57.579 | 39.130 | 0.00 | 0.00 | 0.00 | 1.47 |
3380 | 3473 | 6.435292 | ACCACCAGTTATCTACAGAGTTTT | 57.565 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
3558 | 3745 | 8.046708 | AGTACTTCTGAATATTATGGTTGCACA | 58.953 | 33.333 | 0.00 | 0.00 | 0.00 | 4.57 |
3646 | 3833 | 2.714250 | TGTAGTTCATGGTTTCCCAGGT | 59.286 | 45.455 | 0.00 | 0.00 | 46.15 | 4.00 |
3660 | 3847 | 1.406887 | CCCAGGTCACCGAATCGAAAT | 60.407 | 52.381 | 3.36 | 0.00 | 0.00 | 2.17 |
3661 | 3848 | 2.159014 | CCCAGGTCACCGAATCGAAATA | 60.159 | 50.000 | 3.36 | 0.00 | 0.00 | 1.40 |
3662 | 3849 | 2.864343 | CCAGGTCACCGAATCGAAATAC | 59.136 | 50.000 | 3.36 | 0.00 | 0.00 | 1.89 |
3663 | 3850 | 3.430374 | CCAGGTCACCGAATCGAAATACT | 60.430 | 47.826 | 3.36 | 0.00 | 0.00 | 2.12 |
3664 | 3851 | 3.797256 | CAGGTCACCGAATCGAAATACTC | 59.203 | 47.826 | 3.36 | 0.00 | 0.00 | 2.59 |
3665 | 3852 | 3.121544 | GGTCACCGAATCGAAATACTCC | 58.878 | 50.000 | 3.36 | 0.00 | 0.00 | 3.85 |
3666 | 3853 | 3.121544 | GTCACCGAATCGAAATACTCCC | 58.878 | 50.000 | 3.36 | 0.00 | 0.00 | 4.30 |
3667 | 3854 | 3.028850 | TCACCGAATCGAAATACTCCCT | 58.971 | 45.455 | 3.36 | 0.00 | 0.00 | 4.20 |
3668 | 3855 | 3.067742 | TCACCGAATCGAAATACTCCCTC | 59.932 | 47.826 | 3.36 | 0.00 | 0.00 | 4.30 |
3669 | 3856 | 2.364647 | ACCGAATCGAAATACTCCCTCC | 59.635 | 50.000 | 3.36 | 0.00 | 0.00 | 4.30 |
3670 | 3857 | 2.364324 | CCGAATCGAAATACTCCCTCCA | 59.636 | 50.000 | 3.36 | 0.00 | 0.00 | 3.86 |
3671 | 3858 | 3.006967 | CCGAATCGAAATACTCCCTCCAT | 59.993 | 47.826 | 3.36 | 0.00 | 0.00 | 3.41 |
3672 | 3859 | 4.503296 | CCGAATCGAAATACTCCCTCCATT | 60.503 | 45.833 | 3.36 | 0.00 | 0.00 | 3.16 |
3673 | 3860 | 4.686554 | CGAATCGAAATACTCCCTCCATTC | 59.313 | 45.833 | 0.00 | 0.00 | 0.00 | 2.67 |
3674 | 3861 | 4.625607 | ATCGAAATACTCCCTCCATTCC | 57.374 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
3675 | 3862 | 3.380393 | TCGAAATACTCCCTCCATTCCA | 58.620 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
3676 | 3863 | 3.134081 | TCGAAATACTCCCTCCATTCCAC | 59.866 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
3677 | 3864 | 3.118408 | CGAAATACTCCCTCCATTCCACA | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
3678 | 3865 | 4.625324 | CGAAATACTCCCTCCATTCCACAA | 60.625 | 45.833 | 0.00 | 0.00 | 0.00 | 3.33 |
3679 | 3866 | 5.449553 | GAAATACTCCCTCCATTCCACAAT | 58.550 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
3680 | 3867 | 6.590656 | AAATACTCCCTCCATTCCACAATA | 57.409 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
3681 | 3868 | 6.786843 | AATACTCCCTCCATTCCACAATAT | 57.213 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
3682 | 3869 | 7.888514 | AATACTCCCTCCATTCCACAATATA | 57.111 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
3683 | 3870 | 7.888514 | ATACTCCCTCCATTCCACAATATAA | 57.111 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
3684 | 3871 | 6.192970 | ACTCCCTCCATTCCACAATATAAG | 57.807 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
3685 | 3872 | 5.073691 | ACTCCCTCCATTCCACAATATAAGG | 59.926 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3686 | 3873 | 4.981647 | TCCCTCCATTCCACAATATAAGGT | 59.018 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
3687 | 3874 | 5.072741 | CCCTCCATTCCACAATATAAGGTG | 58.927 | 45.833 | 1.25 | 1.25 | 34.82 | 4.00 |
3688 | 3875 | 5.399038 | CCCTCCATTCCACAATATAAGGTGT | 60.399 | 44.000 | 6.44 | 0.00 | 33.19 | 4.16 |
3689 | 3876 | 6.183361 | CCCTCCATTCCACAATATAAGGTGTA | 60.183 | 42.308 | 6.44 | 0.00 | 33.19 | 2.90 |
3690 | 3877 | 7.461749 | CCTCCATTCCACAATATAAGGTGTAT | 58.538 | 38.462 | 6.44 | 0.00 | 33.19 | 2.29 |
3691 | 3878 | 7.944554 | CCTCCATTCCACAATATAAGGTGTATT | 59.055 | 37.037 | 6.44 | 0.00 | 33.19 | 1.89 |
3692 | 3879 | 8.690203 | TCCATTCCACAATATAAGGTGTATTG | 57.310 | 34.615 | 4.76 | 4.76 | 42.47 | 1.90 |
3693 | 3880 | 7.723616 | TCCATTCCACAATATAAGGTGTATTGG | 59.276 | 37.037 | 9.78 | 6.77 | 41.57 | 3.16 |
3694 | 3881 | 7.505585 | CCATTCCACAATATAAGGTGTATTGGT | 59.494 | 37.037 | 9.78 | 0.00 | 41.57 | 3.67 |
3695 | 3882 | 8.912988 | CATTCCACAATATAAGGTGTATTGGTT | 58.087 | 33.333 | 9.78 | 0.00 | 41.57 | 3.67 |
3696 | 3883 | 8.887264 | TTCCACAATATAAGGTGTATTGGTTT | 57.113 | 30.769 | 9.78 | 0.00 | 41.57 | 3.27 |
3697 | 3884 | 8.514330 | TCCACAATATAAGGTGTATTGGTTTC | 57.486 | 34.615 | 9.78 | 0.00 | 41.57 | 2.78 |
3698 | 3885 | 7.558444 | TCCACAATATAAGGTGTATTGGTTTCC | 59.442 | 37.037 | 9.78 | 0.00 | 41.57 | 3.13 |
3699 | 3886 | 7.414436 | CACAATATAAGGTGTATTGGTTTCCG | 58.586 | 38.462 | 9.78 | 0.00 | 41.57 | 4.30 |
3700 | 3887 | 7.066525 | CACAATATAAGGTGTATTGGTTTCCGT | 59.933 | 37.037 | 9.78 | 0.00 | 41.57 | 4.69 |
3701 | 3888 | 7.066525 | ACAATATAAGGTGTATTGGTTTCCGTG | 59.933 | 37.037 | 9.78 | 0.00 | 41.57 | 4.94 |
3702 | 3889 | 1.530323 | AGGTGTATTGGTTTCCGTGC | 58.470 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
3703 | 3890 | 1.202830 | AGGTGTATTGGTTTCCGTGCA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
3704 | 3891 | 1.609555 | GGTGTATTGGTTTCCGTGCAA | 59.390 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
3705 | 3892 | 2.351350 | GGTGTATTGGTTTCCGTGCAAG | 60.351 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
3706 | 3893 | 2.292292 | GTGTATTGGTTTCCGTGCAAGT | 59.708 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
3707 | 3894 | 2.550606 | TGTATTGGTTTCCGTGCAAGTC | 59.449 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
3708 | 3895 | 1.686355 | ATTGGTTTCCGTGCAAGTCA | 58.314 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3709 | 3896 | 1.464734 | TTGGTTTCCGTGCAAGTCAA | 58.535 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3710 | 3897 | 0.736053 | TGGTTTCCGTGCAAGTCAAC | 59.264 | 50.000 | 0.00 | 1.08 | 0.00 | 3.18 |
3711 | 3898 | 0.736053 | GGTTTCCGTGCAAGTCAACA | 59.264 | 50.000 | 11.47 | 0.00 | 0.00 | 3.33 |
3712 | 3899 | 1.133407 | GGTTTCCGTGCAAGTCAACAA | 59.867 | 47.619 | 11.47 | 0.00 | 0.00 | 2.83 |
3713 | 3900 | 2.182014 | GTTTCCGTGCAAGTCAACAAC | 58.818 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
3714 | 3901 | 1.745232 | TTCCGTGCAAGTCAACAACT | 58.255 | 45.000 | 0.00 | 0.00 | 41.10 | 3.16 |
3716 | 3903 | 2.907634 | TCCGTGCAAGTCAACAACTTA | 58.092 | 42.857 | 0.00 | 0.00 | 46.69 | 2.24 |
3717 | 3904 | 3.271729 | TCCGTGCAAGTCAACAACTTAA | 58.728 | 40.909 | 0.00 | 0.00 | 46.69 | 1.85 |
3718 | 3905 | 3.690139 | TCCGTGCAAGTCAACAACTTAAA | 59.310 | 39.130 | 0.00 | 0.00 | 46.69 | 1.52 |
3719 | 3906 | 4.336993 | TCCGTGCAAGTCAACAACTTAAAT | 59.663 | 37.500 | 0.00 | 0.00 | 46.69 | 1.40 |
3720 | 3907 | 4.440758 | CCGTGCAAGTCAACAACTTAAATG | 59.559 | 41.667 | 0.00 | 0.00 | 46.69 | 2.32 |
3721 | 3908 | 5.034152 | CGTGCAAGTCAACAACTTAAATGT | 58.966 | 37.500 | 0.00 | 0.00 | 46.69 | 2.71 |
3722 | 3909 | 5.514914 | CGTGCAAGTCAACAACTTAAATGTT | 59.485 | 36.000 | 0.00 | 1.47 | 46.69 | 2.71 |
3723 | 3910 | 6.034470 | CGTGCAAGTCAACAACTTAAATGTTT | 59.966 | 34.615 | 0.00 | 0.00 | 46.69 | 2.83 |
3724 | 3911 | 7.172757 | GTGCAAGTCAACAACTTAAATGTTTG | 58.827 | 34.615 | 0.00 | 2.68 | 46.69 | 2.93 |
3725 | 3912 | 7.062839 | GTGCAAGTCAACAACTTAAATGTTTGA | 59.937 | 33.333 | 0.00 | 3.91 | 46.69 | 2.69 |
3726 | 3913 | 7.062839 | TGCAAGTCAACAACTTAAATGTTTGAC | 59.937 | 33.333 | 17.26 | 17.26 | 46.69 | 3.18 |
3727 | 3914 | 7.464045 | GCAAGTCAACAACTTAAATGTTTGACC | 60.464 | 37.037 | 19.08 | 10.21 | 46.69 | 4.02 |
3728 | 3915 | 7.164230 | AGTCAACAACTTAAATGTTTGACCA | 57.836 | 32.000 | 19.08 | 0.00 | 38.90 | 4.02 |
3729 | 3916 | 7.607250 | AGTCAACAACTTAAATGTTTGACCAA | 58.393 | 30.769 | 19.08 | 0.00 | 38.90 | 3.67 |
3730 | 3917 | 7.759433 | AGTCAACAACTTAAATGTTTGACCAAG | 59.241 | 33.333 | 19.08 | 0.00 | 38.90 | 3.61 |
3731 | 3918 | 7.757624 | GTCAACAACTTAAATGTTTGACCAAGA | 59.242 | 33.333 | 15.81 | 5.31 | 38.90 | 3.02 |
3732 | 3919 | 8.474025 | TCAACAACTTAAATGTTTGACCAAGAT | 58.526 | 29.630 | 4.08 | 0.00 | 38.90 | 2.40 |
3733 | 3920 | 9.097257 | CAACAACTTAAATGTTTGACCAAGATT | 57.903 | 29.630 | 4.08 | 0.00 | 38.90 | 2.40 |
3806 | 3993 | 9.865321 | AAACTACTTTTCATGATGGATCAAATG | 57.135 | 29.630 | 0.00 | 0.00 | 40.69 | 2.32 |
3807 | 3994 | 8.812513 | ACTACTTTTCATGATGGATCAAATGA | 57.187 | 30.769 | 0.00 | 0.00 | 40.69 | 2.57 |
3808 | 3995 | 9.417561 | ACTACTTTTCATGATGGATCAAATGAT | 57.582 | 29.630 | 0.00 | 0.00 | 40.69 | 2.45 |
3865 | 4052 | 9.581099 | TTTTTCTAAAAACTCAGTCAAACATCC | 57.419 | 29.630 | 0.00 | 0.00 | 33.29 | 3.51 |
3866 | 4053 | 7.873719 | TTCTAAAAACTCAGTCAAACATCCA | 57.126 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3867 | 4054 | 7.259290 | TCTAAAAACTCAGTCAAACATCCAC | 57.741 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3868 | 4055 | 7.054124 | TCTAAAAACTCAGTCAAACATCCACT | 58.946 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
3869 | 4056 | 5.757850 | AAAACTCAGTCAAACATCCACTC | 57.242 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
3870 | 4057 | 3.032017 | ACTCAGTCAAACATCCACTCG | 57.968 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
3871 | 4058 | 2.365617 | ACTCAGTCAAACATCCACTCGT | 59.634 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
3872 | 4059 | 3.181465 | ACTCAGTCAAACATCCACTCGTT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
3873 | 4060 | 3.804036 | TCAGTCAAACATCCACTCGTTT | 58.196 | 40.909 | 0.00 | 0.00 | 35.76 | 3.60 |
3880 | 4067 | 5.576447 | AAACATCCACTCGTTTGACTTTT | 57.424 | 34.783 | 0.00 | 0.00 | 34.16 | 2.27 |
3881 | 4068 | 4.552166 | ACATCCACTCGTTTGACTTTTG | 57.448 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
3882 | 4069 | 4.196193 | ACATCCACTCGTTTGACTTTTGA | 58.804 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
3883 | 4070 | 4.638421 | ACATCCACTCGTTTGACTTTTGAA | 59.362 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
3884 | 4071 | 5.124776 | ACATCCACTCGTTTGACTTTTGAAA | 59.875 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3885 | 4072 | 5.630661 | TCCACTCGTTTGACTTTTGAAAA | 57.369 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
3886 | 4073 | 6.015027 | TCCACTCGTTTGACTTTTGAAAAA | 57.985 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
3913 | 4100 | 9.720769 | ACGAATACACCTTATATAAAGGAATGG | 57.279 | 33.333 | 10.67 | 6.38 | 39.81 | 3.16 |
3914 | 4101 | 9.938280 | CGAATACACCTTATATAAAGGAATGGA | 57.062 | 33.333 | 10.67 | 0.00 | 39.81 | 3.41 |
3917 | 4104 | 7.091533 | ACACCTTATATAAAGGAATGGAGGG | 57.908 | 40.000 | 10.67 | 4.11 | 39.81 | 4.30 |
3918 | 4105 | 6.855061 | ACACCTTATATAAAGGAATGGAGGGA | 59.145 | 38.462 | 10.67 | 0.00 | 39.81 | 4.20 |
3919 | 4106 | 7.017651 | ACACCTTATATAAAGGAATGGAGGGAG | 59.982 | 40.741 | 10.67 | 3.30 | 39.81 | 4.30 |
4211 | 4398 | 5.375354 | ACCTTTGTCCCCATATAATCCATCA | 59.625 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
4605 | 5081 | 3.146618 | TGCGAAAAGATAGACCGTCTC | 57.853 | 47.619 | 3.74 | 0.00 | 0.00 | 3.36 |
4926 | 5745 | 1.474320 | GGTATTACCGCAGTGGCATGA | 60.474 | 52.381 | 0.00 | 0.00 | 43.94 | 3.07 |
4955 | 8233 | 5.241064 | GCTGCATCTGATGATATTTTCCAGT | 59.759 | 40.000 | 21.30 | 0.00 | 0.00 | 4.00 |
4988 | 8266 | 3.743521 | TGATTCTTGTTCACTCCACCAG | 58.256 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
5074 | 8362 | 6.169800 | AGTAAGGCTTCATTCAGTCTTTCTC | 58.830 | 40.000 | 1.30 | 0.00 | 39.50 | 2.87 |
5139 | 8427 | 2.399396 | AAAATGAACTGCGGTGTTCG | 57.601 | 45.000 | 0.00 | 0.00 | 46.59 | 3.95 |
5260 | 8584 | 5.104193 | AGGAGATACTTCAGGCATGTCATTT | 60.104 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
5305 | 8629 | 3.344515 | GTTGGGTAGTTTCTGATGGGAC | 58.655 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
5547 | 8871 | 1.141019 | GCATCGTCTTCCCGTAGCA | 59.859 | 57.895 | 0.00 | 0.00 | 0.00 | 3.49 |
5548 | 8872 | 0.249489 | GCATCGTCTTCCCGTAGCAT | 60.249 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
5549 | 8873 | 1.806623 | GCATCGTCTTCCCGTAGCATT | 60.807 | 52.381 | 0.00 | 0.00 | 0.00 | 3.56 |
5550 | 8874 | 2.128035 | CATCGTCTTCCCGTAGCATTC | 58.872 | 52.381 | 0.00 | 0.00 | 0.00 | 2.67 |
5628 | 8952 | 5.237779 | TGTTTGTAAACTAGCCAGCAGTTAC | 59.762 | 40.000 | 8.74 | 3.95 | 39.59 | 2.50 |
5633 | 8957 | 2.238847 | CTAGCCAGCAGTTACCCGCA | 62.239 | 60.000 | 0.00 | 0.00 | 0.00 | 5.69 |
5719 | 9043 | 0.467844 | AACTGGCATTGCACCTGACA | 60.468 | 50.000 | 11.39 | 4.04 | 0.00 | 3.58 |
5751 | 9075 | 7.813148 | TGTGTAGCTTCAGACAATTACTTACTC | 59.187 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
5796 | 9120 | 6.019640 | GGTCTTGTGATTTTTGTGTCATTGTG | 60.020 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
5819 | 9143 | 2.939103 | CTGCTAGATTTAGTGGCGCTTT | 59.061 | 45.455 | 5.61 | 0.00 | 0.00 | 3.51 |
5832 | 9156 | 3.437049 | GTGGCGCTTTCAAGTTTATCTCT | 59.563 | 43.478 | 7.64 | 0.00 | 0.00 | 3.10 |
5942 | 9289 | 9.502091 | TTGCTATTTACTCACTGTTAGAAACAT | 57.498 | 29.630 | 0.00 | 0.00 | 41.26 | 2.71 |
5972 | 9319 | 4.054671 | GCCTCGATTAAGTGATGGAAGAG | 58.945 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
5987 | 9335 | 8.884726 | GTGATGGAAGAGACTCTTAAAAATACC | 58.115 | 37.037 | 17.71 | 12.71 | 36.73 | 2.73 |
5989 | 9337 | 9.674068 | GATGGAAGAGACTCTTAAAAATACCTT | 57.326 | 33.333 | 17.71 | 10.50 | 36.73 | 3.50 |
5990 | 9338 | 9.674068 | ATGGAAGAGACTCTTAAAAATACCTTC | 57.326 | 33.333 | 17.71 | 1.10 | 36.73 | 3.46 |
5991 | 9339 | 8.881262 | TGGAAGAGACTCTTAAAAATACCTTCT | 58.119 | 33.333 | 17.71 | 0.00 | 36.73 | 2.85 |
6187 | 9537 | 1.913762 | CCTGTCGTTGTCCCCTCCT | 60.914 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
6227 | 9577 | 1.173043 | CTCTCAGGAGCACGAAGAGT | 58.827 | 55.000 | 0.00 | 0.00 | 32.43 | 3.24 |
6249 | 9599 | 3.876589 | GACAAACGGGAGGCTGCGA | 62.877 | 63.158 | 0.00 | 0.00 | 0.00 | 5.10 |
6315 | 9665 | 2.357034 | GCGGTGTGGTCGACATGT | 60.357 | 61.111 | 18.91 | 0.00 | 36.78 | 3.21 |
6326 | 9676 | 3.188786 | GACATGTGCGGCGAGTCC | 61.189 | 66.667 | 12.98 | 0.00 | 0.00 | 3.85 |
6337 | 9687 | 2.678934 | CGAGTCCGGAAGTGGGGA | 60.679 | 66.667 | 5.23 | 0.00 | 0.00 | 4.81 |
6430 | 9780 | 1.131638 | CCTAGCATCAACAGGGCCTA | 58.868 | 55.000 | 5.28 | 0.00 | 0.00 | 3.93 |
6467 | 9817 | 1.413767 | CGAGTTGGATGGTCTTCGCG | 61.414 | 60.000 | 0.00 | 0.00 | 0.00 | 5.87 |
6469 | 9819 | 1.375523 | GTTGGATGGTCTTCGCGGT | 60.376 | 57.895 | 6.13 | 0.00 | 0.00 | 5.68 |
6507 | 9857 | 3.319198 | TGGCGAGGAGGGTGAACC | 61.319 | 66.667 | 0.00 | 0.00 | 40.67 | 3.62 |
6530 | 9912 | 2.943978 | CGCGACCCTTCCTCTTGGT | 61.944 | 63.158 | 0.00 | 0.00 | 34.33 | 3.67 |
6628 | 10010 | 0.960364 | TTGCCTCATTTGCCGGAGAC | 60.960 | 55.000 | 5.05 | 0.00 | 32.87 | 3.36 |
6629 | 10011 | 1.377202 | GCCTCATTTGCCGGAGACA | 60.377 | 57.895 | 5.05 | 0.00 | 32.87 | 3.41 |
6632 | 10014 | 0.745845 | CTCATTTGCCGGAGACAGGG | 60.746 | 60.000 | 5.05 | 0.00 | 32.87 | 4.45 |
6637 | 10019 | 4.785453 | GCCGGAGACAGGGCCAAG | 62.785 | 72.222 | 5.05 | 0.00 | 43.64 | 3.61 |
6638 | 10020 | 3.003173 | CCGGAGACAGGGCCAAGA | 61.003 | 66.667 | 6.18 | 0.00 | 0.00 | 3.02 |
6639 | 10021 | 2.592993 | CCGGAGACAGGGCCAAGAA | 61.593 | 63.158 | 6.18 | 0.00 | 0.00 | 2.52 |
6640 | 10022 | 1.078848 | CGGAGACAGGGCCAAGAAG | 60.079 | 63.158 | 6.18 | 0.00 | 0.00 | 2.85 |
6641 | 10023 | 1.544825 | CGGAGACAGGGCCAAGAAGA | 61.545 | 60.000 | 6.18 | 0.00 | 0.00 | 2.87 |
6642 | 10024 | 0.915364 | GGAGACAGGGCCAAGAAGAT | 59.085 | 55.000 | 6.18 | 0.00 | 0.00 | 2.40 |
6643 | 10025 | 1.407989 | GGAGACAGGGCCAAGAAGATG | 60.408 | 57.143 | 6.18 | 0.00 | 0.00 | 2.90 |
6644 | 10026 | 1.556911 | GAGACAGGGCCAAGAAGATGA | 59.443 | 52.381 | 6.18 | 0.00 | 0.00 | 2.92 |
6645 | 10027 | 1.280421 | AGACAGGGCCAAGAAGATGAC | 59.720 | 52.381 | 6.18 | 0.00 | 0.00 | 3.06 |
6647 | 10029 | 0.250234 | CAGGGCCAAGAAGATGACGA | 59.750 | 55.000 | 6.18 | 0.00 | 0.00 | 4.20 |
6649 | 10031 | 0.462759 | GGGCCAAGAAGATGACGAGG | 60.463 | 60.000 | 4.39 | 0.00 | 0.00 | 4.63 |
6650 | 10032 | 0.537188 | GGCCAAGAAGATGACGAGGA | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
6651 | 10033 | 1.066143 | GGCCAAGAAGATGACGAGGAA | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
6652 | 10034 | 2.275318 | GCCAAGAAGATGACGAGGAAG | 58.725 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
6653 | 10035 | 2.093973 | GCCAAGAAGATGACGAGGAAGA | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
6654 | 10036 | 3.516615 | CCAAGAAGATGACGAGGAAGAC | 58.483 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
6656 | 10038 | 2.712709 | AGAAGATGACGAGGAAGACGA | 58.287 | 47.619 | 0.00 | 0.00 | 34.70 | 4.20 |
6657 | 10039 | 2.680841 | AGAAGATGACGAGGAAGACGAG | 59.319 | 50.000 | 0.00 | 0.00 | 34.70 | 4.18 |
6658 | 10040 | 1.384525 | AGATGACGAGGAAGACGAGG | 58.615 | 55.000 | 0.00 | 0.00 | 34.70 | 4.63 |
6659 | 10041 | 0.248702 | GATGACGAGGAAGACGAGGC | 60.249 | 60.000 | 0.00 | 0.00 | 34.70 | 4.70 |
6660 | 10042 | 0.681564 | ATGACGAGGAAGACGAGGCT | 60.682 | 55.000 | 0.00 | 0.00 | 34.70 | 4.58 |
6679 | 10064 | 2.746277 | GTCATCGTGGGTGGGCAC | 60.746 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
6696 | 10081 | 2.202743 | CGTCGTCGTCCATGGCAT | 60.203 | 61.111 | 6.96 | 0.00 | 0.00 | 4.40 |
6697 | 10082 | 1.065109 | CGTCGTCGTCCATGGCATA | 59.935 | 57.895 | 6.96 | 0.00 | 0.00 | 3.14 |
6699 | 10084 | 1.065109 | TCGTCGTCCATGGCATACG | 59.935 | 57.895 | 20.09 | 20.09 | 37.96 | 3.06 |
6702 | 10087 | 2.584970 | CGTCCATGGCATACGCGT | 60.585 | 61.111 | 19.17 | 19.17 | 39.92 | 6.01 |
6706 | 10091 | 3.952675 | CATGGCATACGCGTGGGC | 61.953 | 66.667 | 24.59 | 25.03 | 39.92 | 5.36 |
6735 | 10120 | 2.080654 | TTTCTTGGGAAAGTGTGGGG | 57.919 | 50.000 | 0.00 | 0.00 | 36.63 | 4.96 |
6736 | 10121 | 1.227249 | TTCTTGGGAAAGTGTGGGGA | 58.773 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
6737 | 10122 | 1.227249 | TCTTGGGAAAGTGTGGGGAA | 58.773 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
6738 | 10123 | 1.786441 | TCTTGGGAAAGTGTGGGGAAT | 59.214 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
6739 | 10124 | 1.895131 | CTTGGGAAAGTGTGGGGAATG | 59.105 | 52.381 | 0.00 | 0.00 | 0.00 | 2.67 |
6740 | 10125 | 0.114168 | TGGGAAAGTGTGGGGAATGG | 59.886 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
6741 | 10126 | 0.114364 | GGGAAAGTGTGGGGAATGGT | 59.886 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
6742 | 10127 | 1.256812 | GGAAAGTGTGGGGAATGGTG | 58.743 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
6743 | 10128 | 1.256812 | GAAAGTGTGGGGAATGGTGG | 58.743 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
6744 | 10129 | 0.831711 | AAAGTGTGGGGAATGGTGGC | 60.832 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
6745 | 10130 | 3.061848 | GTGTGGGGAATGGTGGCG | 61.062 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
6747 | 10132 | 4.740822 | GTGGGGAATGGTGGCGCT | 62.741 | 66.667 | 7.64 | 0.00 | 0.00 | 5.92 |
6748 | 10133 | 4.738998 | TGGGGAATGGTGGCGCTG | 62.739 | 66.667 | 7.64 | 0.00 | 0.00 | 5.18 |
6749 | 10134 | 4.740822 | GGGGAATGGTGGCGCTGT | 62.741 | 66.667 | 7.64 | 0.00 | 0.00 | 4.40 |
6750 | 10135 | 3.443045 | GGGAATGGTGGCGCTGTG | 61.443 | 66.667 | 7.64 | 0.00 | 0.00 | 3.66 |
6751 | 10136 | 4.120331 | GGAATGGTGGCGCTGTGC | 62.120 | 66.667 | 7.64 | 4.24 | 45.38 | 4.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
3 | 4 | 4.526970 | TCAGGGATAGCAACAATTTCCTC | 58.473 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
50 | 51 | 4.960938 | TCTTTAGCATGCCAGTATCGAAT | 58.039 | 39.130 | 15.66 | 0.00 | 0.00 | 3.34 |
51 | 52 | 4.371786 | CTCTTTAGCATGCCAGTATCGAA | 58.628 | 43.478 | 15.66 | 0.00 | 0.00 | 3.71 |
134 | 135 | 1.755200 | AACCCAAGCCTTCCTTCCTA | 58.245 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
175 | 176 | 4.125703 | CTCGGGAGTCTAGTACGTTACAT | 58.874 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
223 | 224 | 1.001815 | CGAGGGTTTTGTTTGTCGCAT | 60.002 | 47.619 | 0.00 | 0.00 | 0.00 | 4.73 |
236 | 237 | 0.321653 | GTCATGCTGGTTCGAGGGTT | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 4.11 |
237 | 238 | 1.194781 | AGTCATGCTGGTTCGAGGGT | 61.195 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
238 | 239 | 0.742281 | CAGTCATGCTGGTTCGAGGG | 60.742 | 60.000 | 8.70 | 0.00 | 41.42 | 4.30 |
239 | 240 | 2.759783 | CAGTCATGCTGGTTCGAGG | 58.240 | 57.895 | 8.70 | 0.00 | 41.42 | 4.63 |
270 | 271 | 3.498018 | TCAGAAACAACATGGATGACACG | 59.502 | 43.478 | 7.66 | 0.00 | 0.00 | 4.49 |
274 | 275 | 5.563592 | ACTCATCAGAAACAACATGGATGA | 58.436 | 37.500 | 7.66 | 7.17 | 38.90 | 2.92 |
332 | 333 | 4.589908 | ACCGAGCAGAAACCTAATGATTT | 58.410 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
336 | 337 | 6.147821 | CCAATATACCGAGCAGAAACCTAATG | 59.852 | 42.308 | 0.00 | 0.00 | 0.00 | 1.90 |
337 | 338 | 6.231211 | CCAATATACCGAGCAGAAACCTAAT | 58.769 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
346 | 347 | 4.281182 | AGTTAGTCCCAATATACCGAGCAG | 59.719 | 45.833 | 0.00 | 0.00 | 0.00 | 4.24 |
347 | 348 | 4.038763 | CAGTTAGTCCCAATATACCGAGCA | 59.961 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
413 | 414 | 8.996024 | TGTGACAATCGATAAAGACTTAATGA | 57.004 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
418 | 419 | 5.122396 | GGCTTGTGACAATCGATAAAGACTT | 59.878 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
420 | 421 | 4.631813 | AGGCTTGTGACAATCGATAAAGAC | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
429 | 430 | 3.428045 | GCATGGTTAGGCTTGTGACAATC | 60.428 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
536 | 593 | 2.653130 | GCCATTGAATCAGCGCGC | 60.653 | 61.111 | 26.66 | 26.66 | 0.00 | 6.86 |
542 | 599 | 1.902938 | TGTTGTCCGCCATTGAATCA | 58.097 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
544 | 601 | 4.704540 | TCTTATTGTTGTCCGCCATTGAAT | 59.295 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
558 | 615 | 1.734707 | CGGACGCGACCTCTTATTGTT | 60.735 | 52.381 | 24.38 | 0.00 | 0.00 | 2.83 |
562 | 619 | 2.412112 | GCGGACGCGACCTCTTAT | 59.588 | 61.111 | 24.38 | 0.00 | 0.00 | 1.73 |
580 | 637 | 1.651240 | CCACATTGAAGGCGGCTCAG | 61.651 | 60.000 | 13.70 | 3.17 | 0.00 | 3.35 |
604 | 661 | 1.469308 | GATGTAGCCTATAGAGCGCGT | 59.531 | 52.381 | 8.43 | 0.00 | 34.64 | 6.01 |
606 | 663 | 1.202200 | CGGATGTAGCCTATAGAGCGC | 60.202 | 57.143 | 0.00 | 0.00 | 34.64 | 5.92 |
614 | 671 | 2.871637 | GCATTCATGCGGATGTAGCCTA | 60.872 | 50.000 | 16.96 | 0.00 | 44.67 | 3.93 |
675 | 732 | 1.000019 | GGCCCACCTAAAACCCCTC | 60.000 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
679 | 736 | 1.304962 | CCCTGGCCCACCTAAAACC | 60.305 | 63.158 | 0.00 | 0.00 | 36.63 | 3.27 |
702 | 759 | 0.248215 | CGCTATTTTGCCCGCTTCTG | 60.248 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
713 | 770 | 1.963172 | GGGAATCCGGACGCTATTTT | 58.037 | 50.000 | 6.12 | 0.00 | 0.00 | 1.82 |
769 | 827 | 2.968156 | TGGTCCGGACGCGTTTTG | 60.968 | 61.111 | 27.68 | 6.24 | 0.00 | 2.44 |
791 | 849 | 2.416260 | GGTCCTGTATCGGTCCGC | 59.584 | 66.667 | 6.34 | 0.00 | 0.00 | 5.54 |
828 | 886 | 2.982130 | GGACTGCACTGTCCGGAT | 59.018 | 61.111 | 7.81 | 0.00 | 45.69 | 4.18 |
844 | 902 | 0.606401 | AACCTCACGCAACCATCTGG | 60.606 | 55.000 | 0.00 | 0.00 | 42.17 | 3.86 |
857 | 915 | 1.053424 | AAGGCGACCTGTAAACCTCA | 58.947 | 50.000 | 0.00 | 0.00 | 32.13 | 3.86 |
867 | 925 | 2.586792 | GCATCTCCAAGGCGACCT | 59.413 | 61.111 | 0.00 | 0.00 | 33.87 | 3.85 |
885 | 944 | 6.651643 | TCAAATTTGATTTTGATGCTCTTGGG | 59.348 | 34.615 | 16.91 | 0.00 | 39.91 | 4.12 |
911 | 970 | 7.918033 | TCGTGCTGATTGTTTTCTTTTTAATCA | 59.082 | 29.630 | 0.00 | 0.00 | 36.60 | 2.57 |
944 | 1003 | 2.115291 | GGGGCGTTTGGATCTGCTC | 61.115 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
2068 | 2136 | 2.291800 | ACTTGCCTTACCCATGAATGCT | 60.292 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
2071 | 2139 | 3.737559 | TCACTTGCCTTACCCATGAAT | 57.262 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
2348 | 2419 | 9.498307 | ACAAATATTTACATGCTTTACGCTTAC | 57.502 | 29.630 | 0.00 | 0.00 | 40.11 | 2.34 |
2352 | 2423 | 8.523464 | CAGAACAAATATTTACATGCTTTACGC | 58.477 | 33.333 | 0.00 | 0.00 | 39.77 | 4.42 |
2359 | 2430 | 8.638685 | ATTGAGCAGAACAAATATTTACATGC | 57.361 | 30.769 | 14.33 | 14.33 | 0.00 | 4.06 |
2372 | 2443 | 5.124457 | GCCTTATCAGAAATTGAGCAGAACA | 59.876 | 40.000 | 0.00 | 0.00 | 39.68 | 3.18 |
2465 | 2536 | 9.796120 | CAGTTACTTGTATTTTCCAAAGAAACA | 57.204 | 29.630 | 0.00 | 0.00 | 41.69 | 2.83 |
2573 | 2645 | 4.955811 | TCACTGAAAAGGAGCTGTTCTA | 57.044 | 40.909 | 0.00 | 0.00 | 29.67 | 2.10 |
2626 | 2698 | 9.526713 | CGAATATCTGTAATCATTGGAGATAGG | 57.473 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2775 | 2848 | 8.478066 | TCTAGCGCCAGATATCAATACATAAAT | 58.522 | 33.333 | 2.29 | 0.00 | 0.00 | 1.40 |
2906 | 2979 | 3.068590 | AGGGACAAAACATGAAGCAACAG | 59.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2936 | 3009 | 9.127277 | TGTATGTTACTGCGCCAGATATATATA | 57.873 | 33.333 | 4.18 | 0.00 | 35.18 | 0.86 |
2937 | 3010 | 8.007405 | TGTATGTTACTGCGCCAGATATATAT | 57.993 | 34.615 | 4.18 | 0.00 | 35.18 | 0.86 |
3010 | 3083 | 8.986847 | CGCTTATCAGTCAATTTTCAGATCTAT | 58.013 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
3295 | 3387 | 3.906218 | TCCTCTGCTGCAGGTTCATATAT | 59.094 | 43.478 | 27.79 | 0.00 | 32.20 | 0.86 |
3392 | 3579 | 6.727215 | CATACTCGAACTTCTAGTAGGGAAC | 58.273 | 44.000 | 8.63 | 0.00 | 29.85 | 3.62 |
3558 | 3745 | 5.353123 | GCATGGCAAAACATTGAATCTTCAT | 59.647 | 36.000 | 0.00 | 0.00 | 37.00 | 2.57 |
3646 | 3833 | 3.028850 | AGGGAGTATTTCGATTCGGTGA | 58.971 | 45.455 | 6.18 | 0.00 | 0.00 | 4.02 |
3660 | 3847 | 6.272324 | CCTTATATTGTGGAATGGAGGGAGTA | 59.728 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
3661 | 3848 | 5.073691 | CCTTATATTGTGGAATGGAGGGAGT | 59.926 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3662 | 3849 | 5.073691 | ACCTTATATTGTGGAATGGAGGGAG | 59.926 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3663 | 3850 | 4.981647 | ACCTTATATTGTGGAATGGAGGGA | 59.018 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
3664 | 3851 | 5.072741 | CACCTTATATTGTGGAATGGAGGG | 58.927 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3665 | 3852 | 5.694995 | ACACCTTATATTGTGGAATGGAGG | 58.305 | 41.667 | 6.98 | 0.00 | 36.80 | 4.30 |
3666 | 3853 | 8.786898 | CAATACACCTTATATTGTGGAATGGAG | 58.213 | 37.037 | 6.98 | 0.00 | 35.95 | 3.86 |
3667 | 3854 | 7.723616 | CCAATACACCTTATATTGTGGAATGGA | 59.276 | 37.037 | 12.92 | 0.00 | 38.03 | 3.41 |
3668 | 3855 | 7.505585 | ACCAATACACCTTATATTGTGGAATGG | 59.494 | 37.037 | 15.25 | 15.25 | 38.03 | 3.16 |
3669 | 3856 | 8.463930 | ACCAATACACCTTATATTGTGGAATG | 57.536 | 34.615 | 6.98 | 2.57 | 38.03 | 2.67 |
3670 | 3857 | 9.487442 | AAACCAATACACCTTATATTGTGGAAT | 57.513 | 29.630 | 6.98 | 0.00 | 38.03 | 3.01 |
3671 | 3858 | 8.887264 | AAACCAATACACCTTATATTGTGGAA | 57.113 | 30.769 | 6.98 | 0.00 | 38.03 | 3.53 |
3672 | 3859 | 7.558444 | GGAAACCAATACACCTTATATTGTGGA | 59.442 | 37.037 | 6.98 | 0.00 | 38.03 | 4.02 |
3673 | 3860 | 7.468084 | CGGAAACCAATACACCTTATATTGTGG | 60.468 | 40.741 | 6.98 | 0.00 | 38.03 | 4.17 |
3674 | 3861 | 7.066525 | ACGGAAACCAATACACCTTATATTGTG | 59.933 | 37.037 | 4.53 | 1.68 | 38.03 | 3.33 |
3675 | 3862 | 7.066525 | CACGGAAACCAATACACCTTATATTGT | 59.933 | 37.037 | 4.53 | 0.00 | 38.03 | 2.71 |
3676 | 3863 | 7.414436 | CACGGAAACCAATACACCTTATATTG | 58.586 | 38.462 | 0.00 | 0.00 | 38.99 | 1.90 |
3677 | 3864 | 6.038936 | GCACGGAAACCAATACACCTTATATT | 59.961 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
3678 | 3865 | 5.529800 | GCACGGAAACCAATACACCTTATAT | 59.470 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
3679 | 3866 | 4.877251 | GCACGGAAACCAATACACCTTATA | 59.123 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
3680 | 3867 | 3.692593 | GCACGGAAACCAATACACCTTAT | 59.307 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
3681 | 3868 | 3.075884 | GCACGGAAACCAATACACCTTA | 58.924 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
3682 | 3869 | 1.883926 | GCACGGAAACCAATACACCTT | 59.116 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
3683 | 3870 | 1.202830 | TGCACGGAAACCAATACACCT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
3684 | 3871 | 1.240256 | TGCACGGAAACCAATACACC | 58.760 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
3685 | 3872 | 2.292292 | ACTTGCACGGAAACCAATACAC | 59.708 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
3686 | 3873 | 2.550606 | GACTTGCACGGAAACCAATACA | 59.449 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
3687 | 3874 | 2.550606 | TGACTTGCACGGAAACCAATAC | 59.449 | 45.455 | 0.00 | 0.00 | 0.00 | 1.89 |
3688 | 3875 | 2.852449 | TGACTTGCACGGAAACCAATA | 58.148 | 42.857 | 0.00 | 0.00 | 0.00 | 1.90 |
3689 | 3876 | 1.686355 | TGACTTGCACGGAAACCAAT | 58.314 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3690 | 3877 | 1.133407 | GTTGACTTGCACGGAAACCAA | 59.867 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
3691 | 3878 | 0.736053 | GTTGACTTGCACGGAAACCA | 59.264 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3692 | 3879 | 0.736053 | TGTTGACTTGCACGGAAACC | 59.264 | 50.000 | 7.49 | 0.00 | 0.00 | 3.27 |
3693 | 3880 | 2.159435 | AGTTGTTGACTTGCACGGAAAC | 60.159 | 45.455 | 0.00 | 0.00 | 33.92 | 2.78 |
3694 | 3881 | 2.088423 | AGTTGTTGACTTGCACGGAAA | 58.912 | 42.857 | 0.00 | 0.00 | 33.92 | 3.13 |
3695 | 3882 | 1.745232 | AGTTGTTGACTTGCACGGAA | 58.255 | 45.000 | 0.00 | 0.00 | 33.92 | 4.30 |
3696 | 3883 | 1.745232 | AAGTTGTTGACTTGCACGGA | 58.255 | 45.000 | 0.00 | 0.00 | 46.66 | 4.69 |
3704 | 3891 | 7.164230 | TGGTCAAACATTTAAGTTGTTGACT | 57.836 | 32.000 | 16.63 | 0.00 | 41.47 | 3.41 |
3705 | 3892 | 7.757624 | TCTTGGTCAAACATTTAAGTTGTTGAC | 59.242 | 33.333 | 11.98 | 11.98 | 37.38 | 3.18 |
3706 | 3893 | 7.831753 | TCTTGGTCAAACATTTAAGTTGTTGA | 58.168 | 30.769 | 6.63 | 0.00 | 37.38 | 3.18 |
3707 | 3894 | 8.647143 | ATCTTGGTCAAACATTTAAGTTGTTG | 57.353 | 30.769 | 6.63 | 0.00 | 37.38 | 3.33 |
3780 | 3967 | 9.865321 | CATTTGATCCATCATGAAAAGTAGTTT | 57.135 | 29.630 | 0.00 | 0.00 | 36.56 | 2.66 |
3781 | 3968 | 9.246670 | TCATTTGATCCATCATGAAAAGTAGTT | 57.753 | 29.630 | 0.00 | 0.00 | 36.56 | 2.24 |
3782 | 3969 | 8.812513 | TCATTTGATCCATCATGAAAAGTAGT | 57.187 | 30.769 | 0.00 | 0.00 | 36.56 | 2.73 |
3839 | 4026 | 9.581099 | GGATGTTTGACTGAGTTTTTAGAAAAA | 57.419 | 29.630 | 0.00 | 0.00 | 35.67 | 1.94 |
3840 | 4027 | 8.744652 | TGGATGTTTGACTGAGTTTTTAGAAAA | 58.255 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
3841 | 4028 | 8.188139 | GTGGATGTTTGACTGAGTTTTTAGAAA | 58.812 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
3842 | 4029 | 7.556275 | AGTGGATGTTTGACTGAGTTTTTAGAA | 59.444 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
3843 | 4030 | 7.054124 | AGTGGATGTTTGACTGAGTTTTTAGA | 58.946 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
3844 | 4031 | 7.264373 | AGTGGATGTTTGACTGAGTTTTTAG | 57.736 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
3845 | 4032 | 6.018262 | CGAGTGGATGTTTGACTGAGTTTTTA | 60.018 | 38.462 | 0.00 | 0.00 | 0.00 | 1.52 |
3846 | 4033 | 5.220854 | CGAGTGGATGTTTGACTGAGTTTTT | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3847 | 4034 | 4.273480 | CGAGTGGATGTTTGACTGAGTTTT | 59.727 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
3848 | 4035 | 3.809832 | CGAGTGGATGTTTGACTGAGTTT | 59.190 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
3849 | 4036 | 3.181465 | ACGAGTGGATGTTTGACTGAGTT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
3850 | 4037 | 2.365617 | ACGAGTGGATGTTTGACTGAGT | 59.634 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
3851 | 4038 | 3.032017 | ACGAGTGGATGTTTGACTGAG | 57.968 | 47.619 | 0.00 | 0.00 | 0.00 | 3.35 |
3852 | 4039 | 3.469008 | AACGAGTGGATGTTTGACTGA | 57.531 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
3858 | 4045 | 5.124776 | TCAAAAGTCAAACGAGTGGATGTTT | 59.875 | 36.000 | 0.00 | 0.00 | 38.76 | 2.83 |
3859 | 4046 | 4.638421 | TCAAAAGTCAAACGAGTGGATGTT | 59.362 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
3860 | 4047 | 4.196193 | TCAAAAGTCAAACGAGTGGATGT | 58.804 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
3861 | 4048 | 4.811555 | TCAAAAGTCAAACGAGTGGATG | 57.188 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
3862 | 4049 | 5.828299 | TTTCAAAAGTCAAACGAGTGGAT | 57.172 | 34.783 | 0.00 | 0.00 | 0.00 | 3.41 |
3863 | 4050 | 5.630661 | TTTTCAAAAGTCAAACGAGTGGA | 57.369 | 34.783 | 0.00 | 0.00 | 0.00 | 4.02 |
3887 | 4074 | 9.720769 | CCATTCCTTTATATAAGGTGTATTCGT | 57.279 | 33.333 | 4.13 | 0.00 | 38.55 | 3.85 |
3888 | 4075 | 9.938280 | TCCATTCCTTTATATAAGGTGTATTCG | 57.062 | 33.333 | 4.13 | 0.00 | 38.55 | 3.34 |
3891 | 4078 | 8.836735 | CCCTCCATTCCTTTATATAAGGTGTAT | 58.163 | 37.037 | 4.13 | 4.58 | 38.55 | 2.29 |
3892 | 4079 | 8.020253 | TCCCTCCATTCCTTTATATAAGGTGTA | 58.980 | 37.037 | 4.13 | 3.09 | 38.55 | 2.90 |
3893 | 4080 | 6.855061 | TCCCTCCATTCCTTTATATAAGGTGT | 59.145 | 38.462 | 4.13 | 2.81 | 38.55 | 4.16 |
3894 | 4081 | 7.017651 | ACTCCCTCCATTCCTTTATATAAGGTG | 59.982 | 40.741 | 4.13 | 0.00 | 38.55 | 4.00 |
3895 | 4082 | 7.089566 | ACTCCCTCCATTCCTTTATATAAGGT | 58.910 | 38.462 | 4.13 | 0.00 | 38.55 | 3.50 |
3896 | 4083 | 7.575499 | ACTCCCTCCATTCCTTTATATAAGG | 57.425 | 40.000 | 0.00 | 0.00 | 38.78 | 2.69 |
3902 | 4089 | 9.629649 | TGTAATATACTCCCTCCATTCCTTTAT | 57.370 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3903 | 4090 | 9.101325 | CTGTAATATACTCCCTCCATTCCTTTA | 57.899 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
3904 | 4091 | 7.794683 | TCTGTAATATACTCCCTCCATTCCTTT | 59.205 | 37.037 | 0.00 | 0.00 | 0.00 | 3.11 |
3905 | 4092 | 7.313731 | TCTGTAATATACTCCCTCCATTCCTT | 58.686 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
3906 | 4093 | 6.875469 | TCTGTAATATACTCCCTCCATTCCT | 58.125 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3907 | 4094 | 6.954684 | TCTCTGTAATATACTCCCTCCATTCC | 59.045 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
3908 | 4095 | 8.423906 | TTCTCTGTAATATACTCCCTCCATTC | 57.576 | 38.462 | 0.00 | 0.00 | 0.00 | 2.67 |
3909 | 4096 | 8.798975 | TTTCTCTGTAATATACTCCCTCCATT | 57.201 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
3910 | 4097 | 8.652290 | GTTTTCTCTGTAATATACTCCCTCCAT | 58.348 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
3911 | 4098 | 7.201884 | CGTTTTCTCTGTAATATACTCCCTCCA | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 3.86 |
3912 | 4099 | 7.146648 | CGTTTTCTCTGTAATATACTCCCTCC | 58.853 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
3913 | 4100 | 7.714703 | ACGTTTTCTCTGTAATATACTCCCTC | 58.285 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
3914 | 4101 | 7.657023 | ACGTTTTCTCTGTAATATACTCCCT | 57.343 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3915 | 4102 | 8.628280 | ACTACGTTTTCTCTGTAATATACTCCC | 58.372 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
4137 | 4324 | 5.406780 | CCTCAACAACTGACTGATACTTCAC | 59.593 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4211 | 4398 | 5.012239 | AGCCAAATCACACACTGATAATGT | 58.988 | 37.500 | 0.00 | 0.00 | 38.82 | 2.71 |
4605 | 5081 | 7.548097 | AGATTTACCGTATGTATAGCTCCATG | 58.452 | 38.462 | 0.00 | 0.00 | 0.00 | 3.66 |
4926 | 5745 | 2.711978 | ATCATCAGATGCAGCACTGT | 57.288 | 45.000 | 18.66 | 8.53 | 35.84 | 3.55 |
4955 | 8233 | 8.258007 | AGTGAACAAGAATCAACCGAATATAGA | 58.742 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
4988 | 8266 | 4.620982 | AGCTGAAACATACAAACAAAGCC | 58.379 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
5020 | 8308 | 2.295349 | GTGCCAGATATGCCCAAGAATG | 59.705 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
5044 | 8332 | 4.288626 | ACTGAATGAAGCCTTACTTACCCA | 59.711 | 41.667 | 0.00 | 0.00 | 39.29 | 4.51 |
5092 | 8380 | 2.654749 | TCATGGCTCTCTGTACAACG | 57.345 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
5139 | 8427 | 5.904362 | ATTAATGACAGGGAGCAAAAGAC | 57.096 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
5276 | 8600 | 6.778834 | TCAGAAACTACCCAACGACATATA | 57.221 | 37.500 | 0.00 | 0.00 | 0.00 | 0.86 |
5283 | 8607 | 2.027561 | TCCCATCAGAAACTACCCAACG | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
5288 | 8612 | 3.181464 | GCTAGGTCCCATCAGAAACTACC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 3.18 |
5305 | 8629 | 1.860950 | CGAATGACCATTCACGCTAGG | 59.139 | 52.381 | 19.15 | 1.73 | 45.60 | 3.02 |
5547 | 8871 | 6.837048 | TCATGGATTCATCTTGTGGAATGAAT | 59.163 | 34.615 | 9.64 | 9.64 | 43.83 | 2.57 |
5548 | 8872 | 6.095860 | GTCATGGATTCATCTTGTGGAATGAA | 59.904 | 38.462 | 0.00 | 0.74 | 37.42 | 2.57 |
5549 | 8873 | 5.591472 | GTCATGGATTCATCTTGTGGAATGA | 59.409 | 40.000 | 0.00 | 0.00 | 34.06 | 2.57 |
5550 | 8874 | 5.221185 | GGTCATGGATTCATCTTGTGGAATG | 60.221 | 44.000 | 0.00 | 0.00 | 34.06 | 2.67 |
5584 | 8908 | 0.179181 | AAGCGCAAATGAGATGCACG | 60.179 | 50.000 | 11.47 | 0.00 | 44.01 | 5.34 |
5628 | 8952 | 1.081442 | GAAGACGGCTTTTTGCGGG | 60.081 | 57.895 | 4.21 | 0.00 | 44.89 | 6.13 |
5633 | 8957 | 4.073293 | TCTCAGAAGAAGACGGCTTTTT | 57.927 | 40.909 | 4.21 | 5.47 | 33.61 | 1.94 |
5751 | 9075 | 3.058016 | ACCATTCTGTCAAAACTGATGCG | 60.058 | 43.478 | 0.00 | 0.00 | 33.90 | 4.73 |
5796 | 9120 | 1.861575 | GCGCCACTAAATCTAGCAGTC | 59.138 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
5819 | 9143 | 6.299141 | ACTGCCAAAGAAGAGATAAACTTGA | 58.701 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5925 | 9249 | 8.507249 | GCATAGAAAATGTTTCTAACAGTGAGT | 58.493 | 33.333 | 12.99 | 0.00 | 45.95 | 3.41 |
5926 | 9250 | 7.965107 | GGCATAGAAAATGTTTCTAACAGTGAG | 59.035 | 37.037 | 12.99 | 0.00 | 45.95 | 3.51 |
5927 | 9251 | 7.665559 | AGGCATAGAAAATGTTTCTAACAGTGA | 59.334 | 33.333 | 12.99 | 0.00 | 45.95 | 3.41 |
5942 | 9289 | 6.483307 | CCATCACTTAATCGAGGCATAGAAAA | 59.517 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
6113 | 9463 | 4.722535 | AGGAGGAGGGGCGAGCAA | 62.723 | 66.667 | 0.00 | 0.00 | 0.00 | 3.91 |
6171 | 9521 | 1.911766 | GGAGGAGGGGACAACGACA | 60.912 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
6176 | 9526 | 1.538876 | CAGGTGGAGGAGGGGACAA | 60.539 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
6187 | 9537 | 3.005539 | GGAGCTGGAGCAGGTGGA | 61.006 | 66.667 | 0.00 | 0.00 | 42.53 | 4.02 |
6227 | 9577 | 0.821711 | CAGCCTCCCGTTTGTCCAAA | 60.822 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
6267 | 9617 | 4.404098 | CTACCCCCACCGTGCCAC | 62.404 | 72.222 | 0.00 | 0.00 | 0.00 | 5.01 |
6268 | 9618 | 3.542864 | TACTACCCCCACCGTGCCA | 62.543 | 63.158 | 0.00 | 0.00 | 0.00 | 4.92 |
6269 | 9619 | 2.684655 | TACTACCCCCACCGTGCC | 60.685 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
6270 | 9620 | 2.897972 | CTACTACCCCCACCGTGC | 59.102 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
6271 | 9621 | 2.728435 | GGCTACTACCCCCACCGTG | 61.728 | 68.421 | 0.00 | 0.00 | 0.00 | 4.94 |
6272 | 9622 | 2.364710 | GGCTACTACCCCCACCGT | 60.365 | 66.667 | 0.00 | 0.00 | 0.00 | 4.83 |
6273 | 9623 | 3.534056 | CGGCTACTACCCCCACCG | 61.534 | 72.222 | 0.00 | 0.00 | 0.00 | 4.94 |
6274 | 9624 | 2.364710 | ACGGCTACTACCCCCACC | 60.365 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
6275 | 9625 | 2.897972 | CACGGCTACTACCCCCAC | 59.102 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
6276 | 9626 | 3.078836 | GCACGGCTACTACCCCCA | 61.079 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
6277 | 9627 | 4.217159 | CGCACGGCTACTACCCCC | 62.217 | 72.222 | 0.00 | 0.00 | 0.00 | 5.40 |
6278 | 9628 | 4.886121 | GCGCACGGCTACTACCCC | 62.886 | 72.222 | 0.30 | 0.00 | 39.11 | 4.95 |
6279 | 9629 | 4.886121 | GGCGCACGGCTACTACCC | 62.886 | 72.222 | 10.83 | 0.00 | 42.94 | 3.69 |
6302 | 9652 | 2.356913 | CCGCACATGTCGACCACA | 60.357 | 61.111 | 14.12 | 0.00 | 40.18 | 4.17 |
6326 | 9676 | 1.375523 | CCTTCGTTCCCCACTTCCG | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
6421 | 9771 | 2.683933 | CCACGAGGTAGGCCCTGT | 60.684 | 66.667 | 0.00 | 0.00 | 46.51 | 4.00 |
6467 | 9817 | 2.435059 | GAGCAAGAGGTCGCCACC | 60.435 | 66.667 | 0.00 | 0.00 | 44.19 | 4.61 |
6469 | 9819 | 2.659016 | CAGAGCAAGAGGTCGCCA | 59.341 | 61.111 | 0.00 | 0.00 | 46.62 | 5.69 |
6474 | 9824 | 2.345244 | CACCGCAGAGCAAGAGGT | 59.655 | 61.111 | 0.00 | 0.00 | 39.91 | 3.85 |
6603 | 9985 | 0.899717 | GGCAAATGAGGCAAGGTCCA | 60.900 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
6606 | 9988 | 1.978617 | CCGGCAAATGAGGCAAGGT | 60.979 | 57.895 | 0.00 | 0.00 | 0.00 | 3.50 |
6616 | 9998 | 2.044946 | GCCCTGTCTCCGGCAAAT | 60.045 | 61.111 | 0.00 | 0.00 | 45.01 | 2.32 |
6628 | 10010 | 0.250234 | TCGTCATCTTCTTGGCCCTG | 59.750 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
6629 | 10011 | 0.539051 | CTCGTCATCTTCTTGGCCCT | 59.461 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
6632 | 10014 | 2.093973 | TCTTCCTCGTCATCTTCTTGGC | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
6634 | 10016 | 3.119814 | TCGTCTTCCTCGTCATCTTCTTG | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
6636 | 10018 | 2.680841 | CTCGTCTTCCTCGTCATCTTCT | 59.319 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
6637 | 10019 | 2.223386 | CCTCGTCTTCCTCGTCATCTTC | 60.223 | 54.545 | 0.00 | 0.00 | 0.00 | 2.87 |
6638 | 10020 | 1.746220 | CCTCGTCTTCCTCGTCATCTT | 59.254 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
6639 | 10021 | 1.384525 | CCTCGTCTTCCTCGTCATCT | 58.615 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
6640 | 10022 | 0.248702 | GCCTCGTCTTCCTCGTCATC | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 2.92 |
6641 | 10023 | 0.681564 | AGCCTCGTCTTCCTCGTCAT | 60.682 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
6642 | 10024 | 1.303398 | AGCCTCGTCTTCCTCGTCA | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
6643 | 10025 | 1.430228 | GAGCCTCGTCTTCCTCGTC | 59.570 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
6644 | 10026 | 2.400158 | CGAGCCTCGTCTTCCTCGT | 61.400 | 63.158 | 5.82 | 0.00 | 41.47 | 4.18 |
6645 | 10027 | 2.405594 | CGAGCCTCGTCTTCCTCG | 59.594 | 66.667 | 5.82 | 0.00 | 40.76 | 4.63 |
6654 | 10036 | 2.278206 | CCACGATGACGAGCCTCG | 60.278 | 66.667 | 13.52 | 13.52 | 46.93 | 4.63 |
6656 | 10038 | 2.680352 | ACCCACGATGACGAGCCT | 60.680 | 61.111 | 0.00 | 0.00 | 42.66 | 4.58 |
6657 | 10039 | 2.509336 | CACCCACGATGACGAGCC | 60.509 | 66.667 | 0.00 | 0.00 | 42.66 | 4.70 |
6658 | 10040 | 2.509336 | CCACCCACGATGACGAGC | 60.509 | 66.667 | 0.00 | 0.00 | 42.66 | 5.03 |
6659 | 10041 | 2.184322 | CCCACCCACGATGACGAG | 59.816 | 66.667 | 0.00 | 0.00 | 42.66 | 4.18 |
6660 | 10042 | 4.077184 | GCCCACCCACGATGACGA | 62.077 | 66.667 | 0.00 | 0.00 | 42.66 | 4.20 |
6679 | 10064 | 1.065109 | TATGCCATGGACGACGACG | 59.935 | 57.895 | 18.40 | 5.58 | 45.75 | 5.12 |
6719 | 10104 | 1.895131 | CATTCCCCACACTTTCCCAAG | 59.105 | 52.381 | 0.00 | 0.00 | 35.92 | 3.61 |
6720 | 10105 | 1.482177 | CCATTCCCCACACTTTCCCAA | 60.482 | 52.381 | 0.00 | 0.00 | 0.00 | 4.12 |
6721 | 10106 | 0.114168 | CCATTCCCCACACTTTCCCA | 59.886 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
6723 | 10108 | 1.256812 | CACCATTCCCCACACTTTCC | 58.743 | 55.000 | 0.00 | 0.00 | 0.00 | 3.13 |
6724 | 10109 | 1.256812 | CCACCATTCCCCACACTTTC | 58.743 | 55.000 | 0.00 | 0.00 | 0.00 | 2.62 |
6726 | 10111 | 1.228862 | GCCACCATTCCCCACACTT | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
6727 | 10112 | 2.440599 | GCCACCATTCCCCACACT | 59.559 | 61.111 | 0.00 | 0.00 | 0.00 | 3.55 |
6728 | 10113 | 3.061848 | CGCCACCATTCCCCACAC | 61.062 | 66.667 | 0.00 | 0.00 | 0.00 | 3.82 |
6730 | 10115 | 4.740822 | AGCGCCACCATTCCCCAC | 62.741 | 66.667 | 2.29 | 0.00 | 0.00 | 4.61 |
6731 | 10116 | 4.738998 | CAGCGCCACCATTCCCCA | 62.739 | 66.667 | 2.29 | 0.00 | 0.00 | 4.96 |
6732 | 10117 | 4.740822 | ACAGCGCCACCATTCCCC | 62.741 | 66.667 | 2.29 | 0.00 | 0.00 | 4.81 |
6733 | 10118 | 3.443045 | CACAGCGCCACCATTCCC | 61.443 | 66.667 | 2.29 | 0.00 | 0.00 | 3.97 |
6734 | 10119 | 4.120331 | GCACAGCGCCACCATTCC | 62.120 | 66.667 | 2.29 | 0.00 | 32.94 | 3.01 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.