Multiple sequence alignment - TraesCS7B01G411000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G411000 chr7B 100.000 8900 0 0 668 9567 679802642 679793743 0.000000e+00 16436.0
1 TraesCS7B01G411000 chr7B 100.000 263 0 0 1 263 679803309 679803047 4.020000e-133 486.0
2 TraesCS7B01G411000 chr7B 97.710 131 3 0 7880 8010 38563910 38563780 9.670000e-55 226.0
3 TraesCS7B01G411000 chr7B 95.935 123 4 1 7583 7704 630887857 630887979 2.110000e-46 198.0
4 TraesCS7B01G411000 chr7A 93.734 4931 196 41 676 5549 692348427 692343553 0.000000e+00 7289.0
5 TraesCS7B01G411000 chr7A 94.704 2077 65 17 5533 7585 692343437 692341382 0.000000e+00 3184.0
6 TraesCS7B01G411000 chr7A 89.082 1612 116 27 8000 9567 692341241 692339646 0.000000e+00 1947.0
7 TraesCS7B01G411000 chr7A 90.706 269 15 8 1 263 692349150 692348886 5.500000e-92 350.0
8 TraesCS7B01G411000 chr7A 93.162 117 5 1 7698 7811 692341384 692341268 1.650000e-37 169.0
9 TraesCS7B01G411000 chr7A 100.000 40 0 0 7846 7885 692341270 692341231 3.710000e-09 75.0
10 TraesCS7B01G411000 chr7D 92.133 4309 204 57 715 4940 600459165 600454909 0.000000e+00 5954.0
11 TraesCS7B01G411000 chr7D 95.859 2294 57 18 5205 7478 600454495 600452220 0.000000e+00 3675.0
12 TraesCS7B01G411000 chr7D 89.088 1448 95 32 8001 9406 600451954 600450528 0.000000e+00 1740.0
13 TraesCS7B01G411000 chr7D 88.546 227 18 8 1 226 600459768 600459549 1.580000e-67 268.0
14 TraesCS7B01G411000 chr7D 98.165 109 2 0 7745 7853 600452132 600452024 3.530000e-44 191.0
15 TraesCS7B01G411000 chr7D 94.915 118 6 0 7582 7699 93126728 93126845 1.640000e-42 185.0
16 TraesCS7B01G411000 chr7D 94.118 119 7 0 7583 7701 430095846 430095728 2.120000e-41 182.0
17 TraesCS7B01G411000 chr1B 98.473 131 2 0 7881 8011 613039456 613039586 2.080000e-56 231.0
18 TraesCS7B01G411000 chr1B 97.037 135 3 1 7881 8015 482450618 482450485 9.670000e-55 226.0
19 TraesCS7B01G411000 chr1B 84.298 121 11 6 6067 6187 385300660 385300548 2.820000e-20 111.0
20 TraesCS7B01G411000 chr5B 97.744 133 3 0 7881 8013 711837079 711836947 7.470000e-56 230.0
21 TraesCS7B01G411000 chr5B 96.296 135 5 0 7881 8015 18077089 18076955 1.250000e-53 222.0
22 TraesCS7B01G411000 chr5B 91.139 158 12 1 7853 8008 42698169 42698012 7.530000e-51 213.0
23 TraesCS7B01G411000 chr5B 94.915 118 6 0 7583 7700 596547780 596547663 1.640000e-42 185.0
24 TraesCS7B01G411000 chr5B 79.851 134 22 5 6077 6207 641921199 641921330 1.020000e-14 93.5
25 TraesCS7B01G411000 chr3A 97.015 134 4 0 7882 8015 598561951 598561818 9.670000e-55 226.0
26 TraesCS7B01G411000 chr3A 96.581 117 4 0 7583 7699 749204900 749205016 2.730000e-45 195.0
27 TraesCS7B01G411000 chr6B 94.964 139 7 0 7882 8020 716890470 716890332 1.620000e-52 219.0
28 TraesCS7B01G411000 chr6B 94.872 117 6 0 7583 7699 71316818 71316934 5.900000e-42 183.0
29 TraesCS7B01G411000 chr6B 92.248 129 8 2 7580 7706 597021411 597021283 2.120000e-41 182.0
30 TraesCS7B01G411000 chr6B 97.222 36 0 1 7853 7887 145899785 145899820 1.040000e-04 60.2
31 TraesCS7B01G411000 chr4A 90.625 160 13 1 7853 8010 236160469 236160628 2.710000e-50 211.0
32 TraesCS7B01G411000 chr4A 90.698 43 4 0 6083 6125 6346846 6346804 3.730000e-04 58.4
33 TraesCS7B01G411000 chr2B 96.581 117 4 0 7583 7699 710283514 710283398 2.730000e-45 195.0
34 TraesCS7B01G411000 chr2B 93.388 121 8 0 7583 7703 729806050 729806170 7.630000e-41 180.0
35 TraesCS7B01G411000 chr2B 77.848 158 21 7 7854 8008 52463188 52463334 1.710000e-12 86.1
36 TraesCS7B01G411000 chr2B 85.526 76 7 4 6063 6134 705352573 705352498 1.030000e-09 76.8
37 TraesCS7B01G411000 chr2B 82.609 92 9 5 6082 6173 283176039 283176123 3.710000e-09 75.0
38 TraesCS7B01G411000 chr2D 83.465 127 16 4 6063 6186 584862689 584862565 7.850000e-21 113.0
39 TraesCS7B01G411000 chr2D 93.478 46 2 1 6080 6125 239718122 239718166 6.200000e-07 67.6
40 TraesCS7B01G411000 chr2D 97.368 38 1 0 6080 6117 239718253 239718290 2.230000e-06 65.8
41 TraesCS7B01G411000 chr2A 80.921 152 19 8 6063 6211 718971229 718971085 2.820000e-20 111.0
42 TraesCS7B01G411000 chr2A 80.851 94 11 5 6080 6173 235326408 235326322 6.200000e-07 67.6
43 TraesCS7B01G411000 chr6D 88.571 70 6 2 6137 6206 298799889 298799956 6.160000e-12 84.2
44 TraesCS7B01G411000 chr5D 100.000 29 0 0 7853 7881 338393605 338393577 5.000000e-03 54.7
45 TraesCS7B01G411000 chr5A 100.000 29 0 0 7853 7881 439431348 439431320 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G411000 chr7B 679793743 679803309 9566 True 8461.0 16436 100.000000 1 9567 2 chr7B.!!$R2 9566
1 TraesCS7B01G411000 chr7A 692339646 692349150 9504 True 2169.0 7289 93.564667 1 9567 6 chr7A.!!$R1 9566
2 TraesCS7B01G411000 chr7D 600450528 600459768 9240 True 2365.6 5954 92.758200 1 9406 5 chr7D.!!$R2 9405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 153 0.626916 TTTTCCCGTCCCCCTTATGG 59.373 55.000 0.00 0.00 0.00 2.74 F
1459 1529 0.594796 CGTTGTTGTGCAGGGCTTTC 60.595 55.000 0.00 0.00 0.00 2.62 F
1876 1957 0.179127 CTGCTTGTGCGCTAGAGCTA 60.179 55.000 19.55 5.99 43.34 3.32 F
2363 2475 0.466189 CACCAGCTGACCAAACACCT 60.466 55.000 17.39 0.00 0.00 4.00 F
3287 3406 1.375396 GGCATAGTGGCACGTCACA 60.375 57.895 12.71 0.00 43.14 3.58 F
4378 4506 0.036388 ACACTCGCATGGGTTTCGAT 60.036 50.000 9.86 0.00 0.00 3.59 F
5021 5162 1.366111 CTACGTTTGTGGATGCCCCG 61.366 60.000 0.00 0.00 37.93 5.73 F
5464 5808 0.032416 GGTACTGTAGGGAGGGCAGA 60.032 60.000 0.00 0.00 34.60 4.26 F
5771 6248 1.153349 GGTTAGCCTTCTCCCTGCG 60.153 63.158 0.00 0.00 0.00 5.18 F
7612 8135 0.458889 TCCGGAATTACTTGTCGCCG 60.459 55.000 0.00 0.00 38.54 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1629 0.108992 GCACATCCACCAGTTGCATG 60.109 55.0 0.00 0.0 0.00 4.06 R
2475 2588 0.041400 CAGTGCGTGTCAATGCGAAA 60.041 50.0 0.00 0.0 41.56 3.46 R
3266 3385 0.250510 TGACGTGCCACTATGCCAAA 60.251 50.0 0.00 0.0 0.00 3.28 R
3768 3896 0.392060 ATCGCTCAGCATGCAGTTCA 60.392 50.0 21.98 0.0 34.76 3.18 R
5040 5181 0.037590 TTGGTTGATCCTTCCGTGGG 59.962 55.0 0.00 0.0 37.07 4.61 R
5451 5795 0.617820 TCAAGGTCTGCCCTCCCTAC 60.618 60.0 0.00 0.0 45.47 3.18 R
6539 7031 0.536006 GCTGCACAACTGGAAGACCT 60.536 55.0 0.00 0.0 37.43 3.85 R
6975 7496 5.992829 TGGCAACGAAGACAAAATAGTAGAA 59.007 36.0 0.00 0.0 42.51 2.10 R
7676 8199 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R
8902 9503 0.107312 CATCCAGGCTTCTCCAGGTG 60.107 60.0 0.00 0.0 41.91 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 152 2.517998 TTTTTCCCGTCCCCCTTATG 57.482 50.000 0.00 0.00 0.00 1.90
151 153 0.626916 TTTTCCCGTCCCCCTTATGG 59.373 55.000 0.00 0.00 0.00 2.74
152 154 1.928714 TTTCCCGTCCCCCTTATGGC 61.929 60.000 0.00 0.00 0.00 4.40
153 155 3.886001 CCCGTCCCCCTTATGGCC 61.886 72.222 0.00 0.00 0.00 5.36
154 156 2.772622 CCGTCCCCCTTATGGCCT 60.773 66.667 3.32 0.00 0.00 5.19
155 157 2.383601 CCGTCCCCCTTATGGCCTT 61.384 63.158 3.32 0.00 0.00 4.35
156 158 1.057851 CCGTCCCCCTTATGGCCTTA 61.058 60.000 3.32 0.00 0.00 2.69
157 159 1.064825 CGTCCCCCTTATGGCCTTAT 58.935 55.000 3.32 0.00 0.00 1.73
168 170 1.286305 TGGCCTTATCACCTTCCCCC 61.286 60.000 3.32 0.00 0.00 5.40
213 228 2.368011 CGAGGTTTCTCCCCCTCCC 61.368 68.421 0.00 0.00 43.65 4.30
214 229 1.083141 GAGGTTTCTCCCCCTCCCT 59.917 63.158 0.00 0.00 41.22 4.20
217 232 1.229853 GTTTCTCCCCCTCCCTCCA 60.230 63.158 0.00 0.00 0.00 3.86
219 234 2.782997 TTTCTCCCCCTCCCTCCACC 62.783 65.000 0.00 0.00 0.00 4.61
220 235 3.700350 CTCCCCCTCCCTCCACCT 61.700 72.222 0.00 0.00 0.00 4.00
741 802 4.760047 CCCCCGCCTCTCAACACG 62.760 72.222 0.00 0.00 0.00 4.49
863 924 1.984570 CGGTCAAGGAGGAGCTGGA 60.985 63.158 0.00 0.00 33.24 3.86
865 926 1.220477 GTCAAGGAGGAGCTGGAGC 59.780 63.158 0.00 0.00 42.49 4.70
884 945 2.812619 GGGCAATCGAGAGGGGGAG 61.813 68.421 0.00 0.00 0.00 4.30
1289 1350 3.103911 CGAGCGCGAGGTTCGTTT 61.104 61.111 12.10 0.00 43.39 3.60
1292 1353 0.785979 GAGCGCGAGGTTCGTTTTTA 59.214 50.000 12.10 0.00 45.11 1.52
1298 1359 2.858839 CGAGGTTCGTTTTTAATGGCC 58.141 47.619 0.00 0.00 34.72 5.36
1300 1361 1.542472 AGGTTCGTTTTTAATGGCCCG 59.458 47.619 0.00 0.00 0.00 6.13
1320 1381 1.328986 GCTTCTAGGCGCAACTTCATC 59.671 52.381 10.83 0.00 0.00 2.92
1321 1382 2.621338 CTTCTAGGCGCAACTTCATCA 58.379 47.619 10.83 0.00 0.00 3.07
1322 1383 2.010145 TCTAGGCGCAACTTCATCAC 57.990 50.000 10.83 0.00 0.00 3.06
1343 1404 9.855361 CATCACAGACAATTTTTCGATACTATC 57.145 33.333 0.00 0.00 0.00 2.08
1344 1405 9.823647 ATCACAGACAATTTTTCGATACTATCT 57.176 29.630 0.00 0.00 0.00 1.98
1377 1447 8.535592 CATGACTTAGAAATAGCTCGTTTACAG 58.464 37.037 0.00 0.00 0.00 2.74
1388 1458 3.372206 GCTCGTTTACAGCAATGTGAGAT 59.628 43.478 0.00 0.00 36.82 2.75
1393 1463 6.871492 TCGTTTACAGCAATGTGAGATTTAGA 59.129 34.615 0.00 0.00 0.00 2.10
1395 1465 7.148573 CGTTTACAGCAATGTGAGATTTAGACT 60.149 37.037 0.00 0.00 0.00 3.24
1441 1511 9.355215 GTAATTAATGTAGATGGACCATAGACG 57.645 37.037 7.05 0.00 0.00 4.18
1442 1512 6.971726 TTAATGTAGATGGACCATAGACGT 57.028 37.500 7.05 7.02 0.00 4.34
1443 1513 5.871396 AATGTAGATGGACCATAGACGTT 57.129 39.130 7.05 12.53 0.00 3.99
1444 1514 4.649088 TGTAGATGGACCATAGACGTTG 57.351 45.455 7.05 0.00 0.00 4.10
1445 1515 4.021229 TGTAGATGGACCATAGACGTTGT 58.979 43.478 7.05 0.00 0.00 3.32
1446 1516 4.464951 TGTAGATGGACCATAGACGTTGTT 59.535 41.667 7.05 0.00 0.00 2.83
1447 1517 3.861840 AGATGGACCATAGACGTTGTTG 58.138 45.455 7.05 0.00 0.00 3.33
1448 1518 3.260884 AGATGGACCATAGACGTTGTTGT 59.739 43.478 7.05 0.00 0.00 3.32
1449 1519 2.761559 TGGACCATAGACGTTGTTGTG 58.238 47.619 0.00 0.00 0.00 3.33
1450 1520 1.463444 GGACCATAGACGTTGTTGTGC 59.537 52.381 0.00 0.00 0.00 4.57
1451 1521 2.139917 GACCATAGACGTTGTTGTGCA 58.860 47.619 0.00 0.00 0.00 4.57
1452 1522 2.143122 ACCATAGACGTTGTTGTGCAG 58.857 47.619 0.00 0.00 0.00 4.41
1453 1523 1.464608 CCATAGACGTTGTTGTGCAGG 59.535 52.381 0.00 0.00 0.00 4.85
1454 1524 1.464608 CATAGACGTTGTTGTGCAGGG 59.535 52.381 0.00 0.00 0.00 4.45
1455 1525 0.882927 TAGACGTTGTTGTGCAGGGC 60.883 55.000 0.00 0.00 0.00 5.19
1456 1526 2.124320 ACGTTGTTGTGCAGGGCT 60.124 55.556 0.00 0.00 0.00 5.19
1457 1527 1.724582 GACGTTGTTGTGCAGGGCTT 61.725 55.000 0.00 0.00 0.00 4.35
1458 1528 1.319614 ACGTTGTTGTGCAGGGCTTT 61.320 50.000 0.00 0.00 0.00 3.51
1459 1529 0.594796 CGTTGTTGTGCAGGGCTTTC 60.595 55.000 0.00 0.00 0.00 2.62
1474 1544 3.766051 GGGCTTTCATTTCCATCTGACTT 59.234 43.478 0.00 0.00 0.00 3.01
1503 1573 3.557577 TTTGACTTGATTGACATGCCG 57.442 42.857 0.00 0.00 0.00 5.69
1524 1594 6.538189 CCGAATTAAAAGTTTGGCAATGTT 57.462 33.333 0.00 0.00 0.00 2.71
1538 1608 8.821894 GTTTGGCAATGTTATGAAGTTAACAAA 58.178 29.630 8.61 0.00 43.29 2.83
1550 1620 5.833131 TGAAGTTAACAAAATTGGAGGAGCT 59.167 36.000 8.61 0.00 0.00 4.09
1553 1623 6.012745 AGTTAACAAAATTGGAGGAGCTGAT 58.987 36.000 8.61 0.00 0.00 2.90
1559 1629 2.996249 TTGGAGGAGCTGATGACATC 57.004 50.000 8.59 8.59 0.00 3.06
1579 1649 0.540133 ATGCAACTGGTGGATGTGCA 60.540 50.000 0.00 0.00 36.83 4.57
1597 1667 8.584157 GGATGTGCAATGGGTTATGATATTTTA 58.416 33.333 0.00 0.00 0.00 1.52
1636 1706 3.517500 TGTTGTGGTGTGATAGCTGGATA 59.482 43.478 0.00 0.00 0.00 2.59
1638 1708 4.137116 TGTGGTGTGATAGCTGGATAAC 57.863 45.455 0.00 0.00 0.00 1.89
1657 1727 4.870221 AACGTTGTTGACCTACTTTGTC 57.130 40.909 0.00 0.00 0.00 3.18
1658 1728 4.133013 ACGTTGTTGACCTACTTTGTCT 57.867 40.909 0.00 0.00 33.83 3.41
1684 1756 8.859236 ATTAAGATCCAATAGACATCATGTGG 57.141 34.615 0.00 0.00 0.00 4.17
1689 1761 3.633525 CCAATAGACATCATGTGGGTTGG 59.366 47.826 0.00 2.65 30.56 3.77
1691 1763 2.978156 AGACATCATGTGGGTTGGTT 57.022 45.000 0.00 0.00 0.00 3.67
1692 1764 2.517959 AGACATCATGTGGGTTGGTTG 58.482 47.619 0.00 0.00 0.00 3.77
1693 1765 0.968405 ACATCATGTGGGTTGGTTGC 59.032 50.000 0.00 0.00 0.00 4.17
1728 1800 3.191162 GCATCTATGTTGCCTGTTTGACA 59.809 43.478 0.00 0.00 33.95 3.58
1732 1804 7.537715 CATCTATGTTGCCTGTTTGACAATAA 58.462 34.615 0.00 0.00 0.00 1.40
1744 1816 6.039616 TGTTTGACAATAAGTTTTCTGGCAC 58.960 36.000 0.00 0.00 0.00 5.01
1756 1828 2.174363 TCTGGCACTGACAATGTGAG 57.826 50.000 0.00 0.00 37.60 3.51
1769 1850 3.284617 CAATGTGAGGATTGCCAGATCA 58.715 45.455 0.00 0.00 36.29 2.92
1781 1862 3.959293 TGCCAGATCAGAAATCATGTGT 58.041 40.909 0.00 0.00 0.00 3.72
1792 1873 5.885352 CAGAAATCATGTGTGGGGTGTATTA 59.115 40.000 0.00 0.00 0.00 0.98
1832 1913 8.355913 CAAAGCCTTGGATTAGGAATTAATCTC 58.644 37.037 6.81 0.00 44.67 2.75
1876 1957 0.179127 CTGCTTGTGCGCTAGAGCTA 60.179 55.000 19.55 5.99 43.34 3.32
1940 2025 4.078639 ACTCAATGCTATTGTAGGAGGC 57.921 45.455 8.19 0.00 0.00 4.70
1950 2035 3.685139 TTGTAGGAGGCTCTTCACTTG 57.315 47.619 15.23 0.00 0.00 3.16
1967 2079 2.172717 ACTTGGCCTTAGTGTCAGTTGT 59.827 45.455 3.32 0.00 0.00 3.32
2134 2246 3.971305 TGTTAAGAGTTTGGTGAGGAGGA 59.029 43.478 0.00 0.00 0.00 3.71
2136 2248 1.650528 AGAGTTTGGTGAGGAGGAGG 58.349 55.000 0.00 0.00 0.00 4.30
2247 2359 8.031864 CCAGATAGCATACCTACAATTACAGAG 58.968 40.741 0.00 0.00 0.00 3.35
2316 2428 2.100605 AGGAACTCGCCTGATTGAAC 57.899 50.000 0.00 0.00 36.76 3.18
2321 2433 3.678056 ACTCGCCTGATTGAACTGTTA 57.322 42.857 0.00 0.00 0.00 2.41
2351 2463 0.956633 CATTTGTGCAGTCACCAGCT 59.043 50.000 0.00 0.00 42.46 4.24
2363 2475 0.466189 CACCAGCTGACCAAACACCT 60.466 55.000 17.39 0.00 0.00 4.00
2442 2555 3.268334 AGAAAATGGGTAGGGTGCACATA 59.732 43.478 20.43 8.09 28.61 2.29
2466 2579 2.327568 CCAGTGTTTGCCTTTATTGCG 58.672 47.619 0.00 0.00 0.00 4.85
2475 2588 1.669795 GCCTTTATTGCGTGCTTTGCT 60.670 47.619 0.00 0.00 0.00 3.91
2530 2643 5.887598 TCATGTGCTTGCTTAGATTGGTTAT 59.112 36.000 0.00 0.00 0.00 1.89
2683 2796 8.920174 TCTTTTCTGGATGGATATAGACGTTTA 58.080 33.333 0.00 0.00 0.00 2.01
2689 2802 8.660295 TGGATGGATATAGACGTTTAACCTAT 57.340 34.615 0.00 0.00 0.00 2.57
2771 2885 2.875933 TCAACCCATCGAGTTTGTTCAC 59.124 45.455 0.00 0.00 0.00 3.18
2847 2963 5.244402 TCTGTTCAATGGAAATGCTTCACAT 59.756 36.000 0.00 0.00 42.30 3.21
2865 2981 9.118236 GCTTCACATGTATTTAGAAGTTTGAAC 57.882 33.333 18.71 3.71 38.30 3.18
2910 3026 6.219772 TGGAGATACCCTATCTTCCTATGCTA 59.780 42.308 0.00 0.00 45.16 3.49
3001 3117 8.556213 TGTTGGGTATTTACTAGTTCATCAAC 57.444 34.615 0.00 8.12 0.00 3.18
3221 3340 1.523758 ATTCGAGGTTTGCTGACCAC 58.476 50.000 10.94 4.56 42.35 4.16
3245 3364 1.881973 TCTTTGACACAGCCTGCATTC 59.118 47.619 0.00 0.00 0.00 2.67
3251 3370 4.018490 TGACACAGCCTGCATTCATATTT 58.982 39.130 0.00 0.00 0.00 1.40
3266 3385 9.353999 GCATTCATATTTTTAAACTCGTTTCCT 57.646 29.630 0.00 0.00 34.23 3.36
3286 3405 3.486263 GGCATAGTGGCACGTCAC 58.514 61.111 12.71 3.61 43.14 3.67
3287 3406 1.375396 GGCATAGTGGCACGTCACA 60.375 57.895 12.71 0.00 43.14 3.58
3346 3465 8.526978 TCATAACAGCATGGTCTAGATATTCTC 58.473 37.037 0.00 0.00 43.62 2.87
3562 3688 6.126863 TGTTGATAAGGGAAATGTGAGTCT 57.873 37.500 0.00 0.00 0.00 3.24
3572 3698 6.058183 GGGAAATGTGAGTCTACTGCATATT 58.942 40.000 0.00 0.00 0.00 1.28
3600 3726 8.298854 TCAATTCTGACATTGTGAATACTTTGG 58.701 33.333 0.00 0.00 35.86 3.28
3657 3785 7.262048 CCACACATGTTTTTAACTACCTGTTT 58.738 34.615 0.00 0.00 39.89 2.83
3673 3801 2.923020 CTGTTTGCGCTTCTGTTTTGTT 59.077 40.909 9.73 0.00 0.00 2.83
3768 3896 4.704965 AGAAGACAAAGAAAGCTAACCGT 58.295 39.130 0.00 0.00 0.00 4.83
3896 4024 4.939052 ATGCCGTTACTGAAGCTATACT 57.061 40.909 0.00 0.00 0.00 2.12
4234 4362 3.119137 GGAACTGTTGGTGGATTAATGCC 60.119 47.826 4.35 1.20 0.00 4.40
4378 4506 0.036388 ACACTCGCATGGGTTTCGAT 60.036 50.000 9.86 0.00 0.00 3.59
4456 4585 9.178758 AGGATTGATCAAGGTTAATAACTCAAC 57.821 33.333 14.54 1.46 0.00 3.18
4569 4700 9.778993 CTAATTACTGGTCACATTTTTCATCTG 57.221 33.333 0.00 0.00 0.00 2.90
4799 4940 7.038302 TGTCTGGAATTTATCAGTACTCAACCT 60.038 37.037 0.00 0.00 33.13 3.50
4832 4973 6.147864 ACTTCTGTTTTCTTTTGCATGCTA 57.852 33.333 20.33 8.83 0.00 3.49
4839 4980 8.436046 TGTTTTCTTTTGCATGCTATTTTTCT 57.564 26.923 20.33 0.00 0.00 2.52
4992 5133 2.361940 CCTCCCTCCCCCTCTCTAATTT 60.362 54.545 0.00 0.00 0.00 1.82
4995 5136 2.632360 CCCTCCCCCTCTCTAATTTCCA 60.632 54.545 0.00 0.00 0.00 3.53
5006 5147 6.587990 CCTCTCTAATTTCCATATGCACTACG 59.412 42.308 0.00 0.00 0.00 3.51
5021 5162 1.366111 CTACGTTTGTGGATGCCCCG 61.366 60.000 0.00 0.00 37.93 5.73
5023 5164 3.758931 GTTTGTGGATGCCCCGCC 61.759 66.667 3.72 0.00 44.86 6.13
5281 5622 4.935352 TGCCTTCATTAAAACACAAGCT 57.065 36.364 0.00 0.00 0.00 3.74
5451 5795 7.745620 ATTTGGAAAGAACACTAAGGTACTG 57.254 36.000 0.00 0.00 40.86 2.74
5464 5808 0.032416 GGTACTGTAGGGAGGGCAGA 60.032 60.000 0.00 0.00 34.60 4.26
5479 5823 1.476833 GGCAGACCTTGAACCTGAACA 60.477 52.381 0.00 0.00 0.00 3.18
5627 6104 2.634639 TTTCCCTAGTGCCTAGTGGA 57.365 50.000 11.71 11.71 34.23 4.02
5771 6248 1.153349 GGTTAGCCTTCTCCCTGCG 60.153 63.158 0.00 0.00 0.00 5.18
6036 6514 6.882610 AAGTACTTCATTTGCATCTGACAA 57.117 33.333 1.12 0.00 0.00 3.18
6246 6738 3.820557 AGGACATGCTGTAACTGTTGTT 58.179 40.909 2.69 0.00 39.98 2.83
6339 6831 4.568072 TGGTGACTGTGCAAAGGTATAT 57.432 40.909 9.18 0.00 0.00 0.86
6341 6833 3.627577 GGTGACTGTGCAAAGGTATATGG 59.372 47.826 9.18 0.00 0.00 2.74
6406 6898 3.668141 TGACAGGCATCCCAATGTAAT 57.332 42.857 0.00 0.00 35.18 1.89
6457 6949 7.607991 ACAATAATCTTGGTAGTTGAGTTGAGG 59.392 37.037 0.00 0.00 0.00 3.86
6927 7448 3.055094 TGTGGAAGGAGCATTCTAGGAAC 60.055 47.826 0.00 0.00 0.00 3.62
6975 7496 1.732941 TAATTGCCGCGAGACAATGT 58.267 45.000 18.31 12.56 36.64 2.71
7218 7739 3.735746 CAGCTTTTCCACCGAATTTTGTC 59.264 43.478 0.00 0.00 0.00 3.18
7308 7830 5.183713 TGCAGGTATTTTCTGATTCTGGTTG 59.816 40.000 0.00 0.00 34.36 3.77
7479 8001 7.873739 AAAATTCGACATTGCCTTCTTTAAG 57.126 32.000 0.00 0.00 0.00 1.85
7486 8008 6.350629 ACATTGCCTTCTTTAAGCTTCATT 57.649 33.333 0.00 0.00 0.00 2.57
7557 8080 5.871834 TGTTATACCTGCTACTGGTTTTGT 58.128 37.500 1.29 0.00 36.99 2.83
7588 8111 3.794717 GCAGTAGCTACCTTTTACTCCC 58.205 50.000 20.31 0.00 37.91 4.30
7589 8112 3.451540 GCAGTAGCTACCTTTTACTCCCT 59.548 47.826 20.31 0.00 37.91 4.20
7590 8113 4.441773 GCAGTAGCTACCTTTTACTCCCTC 60.442 50.000 20.31 0.00 37.91 4.30
7591 8114 4.957327 CAGTAGCTACCTTTTACTCCCTCT 59.043 45.833 20.31 0.00 0.00 3.69
7592 8115 4.957327 AGTAGCTACCTTTTACTCCCTCTG 59.043 45.833 20.31 0.00 0.00 3.35
7593 8116 3.792515 AGCTACCTTTTACTCCCTCTGT 58.207 45.455 0.00 0.00 0.00 3.41
7594 8117 3.770388 AGCTACCTTTTACTCCCTCTGTC 59.230 47.826 0.00 0.00 0.00 3.51
7595 8118 3.118702 GCTACCTTTTACTCCCTCTGTCC 60.119 52.174 0.00 0.00 0.00 4.02
7596 8119 1.900486 ACCTTTTACTCCCTCTGTCCG 59.100 52.381 0.00 0.00 0.00 4.79
7597 8120 1.207329 CCTTTTACTCCCTCTGTCCGG 59.793 57.143 0.00 0.00 0.00 5.14
7598 8121 2.176889 CTTTTACTCCCTCTGTCCGGA 58.823 52.381 0.00 0.00 0.00 5.14
7599 8122 2.314071 TTTACTCCCTCTGTCCGGAA 57.686 50.000 5.23 0.00 0.00 4.30
7600 8123 2.544844 TTACTCCCTCTGTCCGGAAT 57.455 50.000 5.23 0.00 0.00 3.01
7601 8124 2.544844 TACTCCCTCTGTCCGGAATT 57.455 50.000 5.23 0.00 0.00 2.17
7602 8125 2.544844 ACTCCCTCTGTCCGGAATTA 57.455 50.000 5.23 0.00 0.00 1.40
7603 8126 2.108970 ACTCCCTCTGTCCGGAATTAC 58.891 52.381 5.23 0.00 0.00 1.89
7604 8127 2.292323 ACTCCCTCTGTCCGGAATTACT 60.292 50.000 5.23 0.00 0.00 2.24
7605 8128 2.766828 CTCCCTCTGTCCGGAATTACTT 59.233 50.000 5.23 0.00 0.00 2.24
7606 8129 2.500098 TCCCTCTGTCCGGAATTACTTG 59.500 50.000 5.23 0.00 0.00 3.16
7607 8130 2.236395 CCCTCTGTCCGGAATTACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
7608 8131 3.522553 CCTCTGTCCGGAATTACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
7609 8132 3.179830 CTCTGTCCGGAATTACTTGTCG 58.820 50.000 5.23 0.00 0.00 4.35
7610 8133 1.659098 CTGTCCGGAATTACTTGTCGC 59.341 52.381 5.23 0.00 0.00 5.19
7611 8134 1.004595 GTCCGGAATTACTTGTCGCC 58.995 55.000 5.23 0.00 0.00 5.54
7612 8135 0.458889 TCCGGAATTACTTGTCGCCG 60.459 55.000 0.00 0.00 38.54 6.46
7613 8136 0.458889 CCGGAATTACTTGTCGCCGA 60.459 55.000 0.00 0.00 41.11 5.54
7614 8137 1.352114 CGGAATTACTTGTCGCCGAA 58.648 50.000 0.00 0.00 41.11 4.30
7615 8138 1.727880 CGGAATTACTTGTCGCCGAAA 59.272 47.619 0.00 0.00 41.11 3.46
7616 8139 2.350498 CGGAATTACTTGTCGCCGAAAT 59.650 45.455 0.00 0.00 41.11 2.17
7617 8140 3.680789 GGAATTACTTGTCGCCGAAATG 58.319 45.455 0.00 0.00 0.00 2.32
7618 8141 3.486875 GGAATTACTTGTCGCCGAAATGG 60.487 47.826 0.00 0.00 42.50 3.16
7619 8142 2.459060 TTACTTGTCGCCGAAATGGA 57.541 45.000 0.00 0.00 42.00 3.41
7620 8143 2.684001 TACTTGTCGCCGAAATGGAT 57.316 45.000 0.00 0.00 42.00 3.41
7621 8144 2.684001 ACTTGTCGCCGAAATGGATA 57.316 45.000 0.00 0.00 42.00 2.59
7622 8145 2.980568 ACTTGTCGCCGAAATGGATAA 58.019 42.857 0.00 0.00 42.00 1.75
7623 8146 3.340034 ACTTGTCGCCGAAATGGATAAA 58.660 40.909 0.00 0.00 42.00 1.40
7624 8147 3.754323 ACTTGTCGCCGAAATGGATAAAA 59.246 39.130 0.00 0.00 42.00 1.52
7625 8148 4.216687 ACTTGTCGCCGAAATGGATAAAAA 59.783 37.500 0.00 0.00 42.00 1.94
7626 8149 4.974368 TGTCGCCGAAATGGATAAAAAT 57.026 36.364 0.00 0.00 42.00 1.82
7627 8150 4.667262 TGTCGCCGAAATGGATAAAAATG 58.333 39.130 0.00 0.00 42.00 2.32
7628 8151 4.041723 GTCGCCGAAATGGATAAAAATGG 58.958 43.478 0.00 0.00 42.00 3.16
7629 8152 3.948473 TCGCCGAAATGGATAAAAATGGA 59.052 39.130 0.00 0.00 42.00 3.41
7630 8153 4.582656 TCGCCGAAATGGATAAAAATGGAT 59.417 37.500 0.00 0.00 42.00 3.41
7631 8154 4.681025 CGCCGAAATGGATAAAAATGGATG 59.319 41.667 0.00 0.00 42.00 3.51
7632 8155 5.600696 GCCGAAATGGATAAAAATGGATGT 58.399 37.500 0.00 0.00 42.00 3.06
7633 8156 6.514212 CGCCGAAATGGATAAAAATGGATGTA 60.514 38.462 0.00 0.00 42.00 2.29
7634 8157 7.378181 GCCGAAATGGATAAAAATGGATGTAT 58.622 34.615 0.00 0.00 42.00 2.29
7635 8158 7.542130 GCCGAAATGGATAAAAATGGATGTATC 59.458 37.037 0.00 0.00 42.00 2.24
7636 8159 8.796475 CCGAAATGGATAAAAATGGATGTATCT 58.204 33.333 0.00 0.00 42.00 1.98
7664 8187 9.733556 AAACTAAAACATGTCTACATACATCCA 57.266 29.630 0.00 0.00 38.01 3.41
7665 8188 9.905713 AACTAAAACATGTCTACATACATCCAT 57.094 29.630 0.00 0.00 38.01 3.41
7666 8189 9.905713 ACTAAAACATGTCTACATACATCCATT 57.094 29.630 0.00 0.00 38.01 3.16
7669 8192 9.466497 AAAACATGTCTACATACATCCATTTCT 57.534 29.630 0.00 0.00 38.01 2.52
7670 8193 9.466497 AAACATGTCTACATACATCCATTTCTT 57.534 29.630 0.00 0.00 38.01 2.52
7671 8194 9.466497 AACATGTCTACATACATCCATTTCTTT 57.534 29.630 0.00 0.00 38.01 2.52
7672 8195 8.896744 ACATGTCTACATACATCCATTTCTTTG 58.103 33.333 0.00 0.00 38.01 2.77
7673 8196 9.112725 CATGTCTACATACATCCATTTCTTTGA 57.887 33.333 0.00 0.00 38.01 2.69
7674 8197 8.492673 TGTCTACATACATCCATTTCTTTGAC 57.507 34.615 0.00 0.00 0.00 3.18
7675 8198 8.100164 TGTCTACATACATCCATTTCTTTGACA 58.900 33.333 0.00 0.00 0.00 3.58
7676 8199 8.946085 GTCTACATACATCCATTTCTTTGACAA 58.054 33.333 0.00 0.00 0.00 3.18
7677 8200 9.166173 TCTACATACATCCATTTCTTTGACAAG 57.834 33.333 0.00 0.00 0.00 3.16
7678 8201 7.765695 ACATACATCCATTTCTTTGACAAGT 57.234 32.000 0.00 0.00 0.00 3.16
7679 8202 8.862325 ACATACATCCATTTCTTTGACAAGTA 57.138 30.769 0.00 0.00 0.00 2.24
7680 8203 9.466497 ACATACATCCATTTCTTTGACAAGTAT 57.534 29.630 0.00 0.00 0.00 2.12
7684 8207 8.306761 ACATCCATTTCTTTGACAAGTATTTCC 58.693 33.333 0.00 0.00 0.00 3.13
7685 8208 6.908825 TCCATTTCTTTGACAAGTATTTCCG 58.091 36.000 0.00 0.00 0.00 4.30
7686 8209 6.072175 TCCATTTCTTTGACAAGTATTTCCGG 60.072 38.462 0.00 0.00 0.00 5.14
7687 8210 6.072175 CCATTTCTTTGACAAGTATTTCCGGA 60.072 38.462 0.00 0.00 0.00 5.14
7688 8211 5.934935 TTCTTTGACAAGTATTTCCGGAC 57.065 39.130 1.83 0.00 0.00 4.79
7689 8212 3.991773 TCTTTGACAAGTATTTCCGGACG 59.008 43.478 1.83 0.00 0.00 4.79
7690 8213 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
7691 8214 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
7692 8215 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
7693 8216 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
7694 8217 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
7695 8218 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
7696 8219 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
7697 8220 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
7698 8221 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
7699 8222 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
7710 8233 4.041938 ACGGAGGGAGTACATTTTTGGTTA 59.958 41.667 0.00 0.00 0.00 2.85
7723 8246 5.876612 TTTTTGGTTATTCCATGCATTGC 57.123 34.783 0.00 0.46 46.60 3.56
7813 8339 4.573021 TTCTGGTGAATCATGGATGTCA 57.427 40.909 0.00 0.00 0.00 3.58
7842 8368 4.846779 TTTCTTGCTGTTGGGTAATGTC 57.153 40.909 0.00 0.00 0.00 3.06
7885 8458 9.364653 TCTTATATTTTGGTAGAGGGAGTACTC 57.635 37.037 14.87 14.87 37.77 2.59
7894 8467 4.256462 GGAGTACTCCCTCCGTCC 57.744 66.667 28.87 4.17 43.94 4.79
7895 8468 1.823041 GGAGTACTCCCTCCGTCCG 60.823 68.421 28.87 0.00 43.94 4.79
7896 8469 1.222936 GAGTACTCCCTCCGTCCGA 59.777 63.158 12.13 0.00 0.00 4.55
7897 8470 0.393537 GAGTACTCCCTCCGTCCGAA 60.394 60.000 12.13 0.00 0.00 4.30
7898 8471 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
7899 8472 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
7900 8473 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
7901 8474 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
7902 8475 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
7903 8476 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
7904 8477 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
7905 8478 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
7906 8479 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
7907 8480 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
7908 8481 2.928116 CTCCGTCCGAAAATACTTGTCC 59.072 50.000 0.00 0.00 0.00 4.02
7909 8482 2.564062 TCCGTCCGAAAATACTTGTCCT 59.436 45.455 0.00 0.00 0.00 3.85
7910 8483 2.928116 CCGTCCGAAAATACTTGTCCTC 59.072 50.000 0.00 0.00 0.00 3.71
7911 8484 3.581755 CGTCCGAAAATACTTGTCCTCA 58.418 45.455 0.00 0.00 0.00 3.86
7912 8485 3.991773 CGTCCGAAAATACTTGTCCTCAA 59.008 43.478 0.00 0.00 0.00 3.02
7913 8486 4.449743 CGTCCGAAAATACTTGTCCTCAAA 59.550 41.667 0.00 0.00 32.87 2.69
7914 8487 5.049954 CGTCCGAAAATACTTGTCCTCAAAA 60.050 40.000 0.00 0.00 32.87 2.44
7915 8488 6.348213 CGTCCGAAAATACTTGTCCTCAAAAT 60.348 38.462 0.00 0.00 32.87 1.82
7916 8489 6.801862 GTCCGAAAATACTTGTCCTCAAAATG 59.198 38.462 0.00 0.00 32.87 2.32
7917 8490 6.072175 TCCGAAAATACTTGTCCTCAAAATGG 60.072 38.462 0.00 0.00 32.87 3.16
7918 8491 6.072175 CCGAAAATACTTGTCCTCAAAATGGA 60.072 38.462 0.00 0.00 32.87 3.41
7927 8500 4.953940 TCCTCAAAATGGACAAAAAGGG 57.046 40.909 0.00 0.00 0.00 3.95
7928 8501 4.551671 TCCTCAAAATGGACAAAAAGGGA 58.448 39.130 0.00 0.00 0.00 4.20
7929 8502 5.154418 TCCTCAAAATGGACAAAAAGGGAT 58.846 37.500 0.00 0.00 0.00 3.85
7930 8503 5.011943 TCCTCAAAATGGACAAAAAGGGATG 59.988 40.000 0.00 0.00 0.00 3.51
7931 8504 5.221702 CCTCAAAATGGACAAAAAGGGATGT 60.222 40.000 0.00 0.00 0.00 3.06
7932 8505 6.014669 CCTCAAAATGGACAAAAAGGGATGTA 60.015 38.462 0.00 0.00 0.00 2.29
7933 8506 7.310609 CCTCAAAATGGACAAAAAGGGATGTAT 60.311 37.037 0.00 0.00 0.00 2.29
7934 8507 7.610865 TCAAAATGGACAAAAAGGGATGTATC 58.389 34.615 0.00 0.00 0.00 2.24
7935 8508 7.454380 TCAAAATGGACAAAAAGGGATGTATCT 59.546 33.333 0.00 0.00 0.00 1.98
7936 8509 8.748412 CAAAATGGACAAAAAGGGATGTATCTA 58.252 33.333 0.00 0.00 0.00 1.98
7937 8510 8.525290 AAATGGACAAAAAGGGATGTATCTAG 57.475 34.615 0.00 0.00 0.00 2.43
7938 8511 6.884472 TGGACAAAAAGGGATGTATCTAGA 57.116 37.500 0.00 0.00 0.00 2.43
7939 8512 7.265599 TGGACAAAAAGGGATGTATCTAGAA 57.734 36.000 0.00 0.00 0.00 2.10
7940 8513 7.110155 TGGACAAAAAGGGATGTATCTAGAAC 58.890 38.462 0.00 0.00 0.00 3.01
7941 8514 7.037586 TGGACAAAAAGGGATGTATCTAGAACT 60.038 37.037 0.00 0.00 0.00 3.01
7942 8515 8.483758 GGACAAAAAGGGATGTATCTAGAACTA 58.516 37.037 0.00 0.00 0.00 2.24
7943 8516 9.886132 GACAAAAAGGGATGTATCTAGAACTAA 57.114 33.333 0.00 0.00 0.00 2.24
7995 8568 9.801873 ATTTATTTTGATGACAAGTATTTCCGG 57.198 29.630 0.00 0.00 37.32 5.14
7996 8569 8.568676 TTATTTTGATGACAAGTATTTCCGGA 57.431 30.769 0.00 0.00 37.32 5.14
7997 8570 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
7998 8571 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
7999 8572 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
8000 8573 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
8001 8574 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
8002 8575 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
8003 8576 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
8004 8577 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
8005 8578 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
8006 8579 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
8007 8580 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
8008 8581 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
8009 8582 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
8070 8643 7.480760 AATTGTTGGTTCCAGTATATTTGCT 57.519 32.000 0.00 0.00 0.00 3.91
8162 8735 6.870971 TTCACACAACAAGAATAAGGTACC 57.129 37.500 2.73 2.73 0.00 3.34
8163 8736 6.182507 TCACACAACAAGAATAAGGTACCT 57.817 37.500 9.21 9.21 0.00 3.08
8185 8758 5.073691 CCTCCTGTTAGGGTCCAAATATGAT 59.926 44.000 0.00 0.00 35.59 2.45
8193 8766 6.271585 AGGGTCCAAATATGATGAGTTGAT 57.728 37.500 0.00 0.00 0.00 2.57
8280 8853 6.194235 TCCCTTTGTATCAAACAGCCAATAT 58.806 36.000 0.00 0.00 39.87 1.28
8314 8887 4.543590 AAGTCGATTCTGGATGTTGACT 57.456 40.909 0.00 0.00 36.83 3.41
8347 8920 3.127895 TGTGCTTTCGTTACTTGTGCTTT 59.872 39.130 0.00 0.00 0.00 3.51
8349 8922 4.561213 GTGCTTTCGTTACTTGTGCTTTTT 59.439 37.500 0.00 0.00 0.00 1.94
8358 8931 6.198216 CGTTACTTGTGCTTTTTATGCTTGTT 59.802 34.615 0.00 0.00 0.00 2.83
8359 8932 7.555582 GTTACTTGTGCTTTTTATGCTTGTTC 58.444 34.615 0.00 0.00 0.00 3.18
8524 9118 7.402862 ACTGTACCCTATGTCTTTTAAGCAAT 58.597 34.615 0.00 0.00 0.00 3.56
8526 9120 6.826741 TGTACCCTATGTCTTTTAAGCAATCC 59.173 38.462 0.00 0.00 0.00 3.01
8542 9136 6.506500 AGCAATCCATACTTTGTTCTTCAG 57.493 37.500 0.00 0.00 0.00 3.02
8546 9140 3.753272 TCCATACTTTGTTCTTCAGCTGC 59.247 43.478 9.47 0.00 0.00 5.25
8710 9306 7.010339 ACCTATTTCTTCAACTAAGCTCACT 57.990 36.000 0.00 0.00 34.97 3.41
8739 9337 6.093219 AGAGTTATACGTAACATGTCACGAGT 59.907 38.462 27.77 16.68 42.13 4.18
8792 9392 8.969121 TGATCATTATTCACAAATCACAACAC 57.031 30.769 0.00 0.00 0.00 3.32
8799 9399 3.249799 TCACAAATCACAACACGATGGTC 59.750 43.478 0.00 0.00 0.00 4.02
8832 9432 2.908940 GCGGATGGGCCATGAAGG 60.909 66.667 26.77 10.87 41.84 3.46
8838 9438 0.033796 ATGGGCCATGAAGGTGAGTG 60.034 55.000 20.49 0.00 40.61 3.51
8841 9441 0.883833 GGCCATGAAGGTGAGTGTTG 59.116 55.000 0.00 0.00 40.61 3.33
8855 9455 3.118847 TGAGTGTTGCAAAATCTTTGGCA 60.119 39.130 0.00 0.53 44.90 4.92
8857 9457 5.212532 AGTGTTGCAAAATCTTTGGCATA 57.787 34.783 0.00 0.00 45.78 3.14
8897 9498 0.245539 CCATTGCAACTCAGCCTTGG 59.754 55.000 0.00 0.00 31.85 3.61
8898 9499 0.245539 CATTGCAACTCAGCCTTGGG 59.754 55.000 0.00 0.00 0.00 4.12
8915 9520 2.360475 GGCACACCTGGAGAAGCC 60.360 66.667 13.84 13.84 34.71 4.35
8924 9529 0.622665 CTGGAGAAGCCTGGATGGTT 59.377 55.000 0.00 0.00 38.35 3.67
8949 9554 1.571919 GCATAGGCGAATCAACTCGT 58.428 50.000 0.00 0.00 40.99 4.18
8950 9555 1.523095 GCATAGGCGAATCAACTCGTC 59.477 52.381 0.00 0.00 43.75 4.20
8952 9557 4.470876 GGCGAATCAACTCGTCGA 57.529 55.556 0.00 0.00 40.99 4.20
8953 9558 2.279469 GGCGAATCAACTCGTCGAG 58.721 57.895 20.57 20.57 40.99 4.04
8955 9560 1.743855 GCGAATCAACTCGTCGAGCC 61.744 60.000 22.00 4.13 40.99 4.70
8958 9563 1.404391 GAATCAACTCGTCGAGCCCTA 59.596 52.381 22.00 5.95 32.04 3.53
8961 9566 0.809385 CAACTCGTCGAGCCCTAGAA 59.191 55.000 22.00 0.00 32.04 2.10
8962 9567 1.096416 AACTCGTCGAGCCCTAGAAG 58.904 55.000 22.00 0.00 32.04 2.85
8977 9587 2.530460 AGAAGCCATGCCAAATGGTA 57.470 45.000 6.25 0.00 41.17 3.25
8979 9589 2.497273 AGAAGCCATGCCAAATGGTAAC 59.503 45.455 6.25 0.00 41.17 2.50
8995 9609 3.211045 GGTAACAAGCCTGAACTGAACA 58.789 45.455 0.00 0.00 0.00 3.18
9006 9620 2.945008 TGAACTGAACAAGCCTCAAGTG 59.055 45.455 0.00 0.00 0.00 3.16
9011 9625 1.338020 GAACAAGCCTCAAGTGGTTGG 59.662 52.381 7.06 0.00 34.09 3.77
9045 9659 3.394674 TTGGTTGACGCAAGATCTACA 57.605 42.857 0.00 0.00 43.62 2.74
9061 9675 7.009179 AGATCTACAAGGATGTGAAGTTCAA 57.991 36.000 7.25 0.00 40.84 2.69
9083 9697 0.250467 CAGGCGCTGGCTACCATTAT 60.250 55.000 7.64 0.00 36.44 1.28
9109 9726 8.830915 TCAGGCCAAGGTAAATTATGAAATAA 57.169 30.769 5.01 0.00 44.01 1.40
9111 9728 7.647715 CAGGCCAAGGTAAATTATGAAATAACG 59.352 37.037 5.01 0.00 42.43 3.18
9154 9771 1.136984 GTCTTGCTGATGCTGCTGC 59.863 57.895 8.89 8.89 40.48 5.25
9156 9773 1.137614 CTTGCTGATGCTGCTGCTG 59.862 57.895 17.00 0.77 40.48 4.41
9157 9774 1.302993 TTGCTGATGCTGCTGCTGA 60.303 52.632 17.00 0.00 40.48 4.26
9158 9775 0.679960 TTGCTGATGCTGCTGCTGAT 60.680 50.000 17.00 2.51 40.48 2.90
9159 9776 1.356979 GCTGATGCTGCTGCTGATG 59.643 57.895 17.00 6.08 40.48 3.07
9160 9777 1.356979 CTGATGCTGCTGCTGATGC 59.643 57.895 17.00 5.74 40.48 3.91
9161 9778 1.077716 TGATGCTGCTGCTGATGCT 60.078 52.632 17.00 0.00 40.48 3.79
9162 9779 1.356979 GATGCTGCTGCTGATGCTG 59.643 57.895 17.00 0.00 40.48 4.41
9163 9780 1.077716 ATGCTGCTGCTGATGCTGA 60.078 52.632 17.00 0.00 40.01 4.26
9164 9781 0.466372 ATGCTGCTGCTGATGCTGAT 60.466 50.000 17.00 0.00 40.01 2.90
9165 9782 1.095807 TGCTGCTGCTGATGCTGATC 61.096 55.000 17.00 0.00 40.01 2.92
9172 9789 4.181578 GCTGCTGATGCTGATCAATTTTT 58.818 39.130 0.00 0.00 38.17 1.94
9190 9807 7.824289 TCAATTTTTCCATAGATGAGAGTTCGT 59.176 33.333 0.00 0.00 0.00 3.85
9207 9824 7.095270 AGAGTTCGTACCCTAATTTTACTGTG 58.905 38.462 0.00 0.00 0.00 3.66
9272 9889 3.633609 ATGCGCTGCACCATCACCT 62.634 57.895 9.73 0.00 43.04 4.00
9386 10004 8.147642 ACATGAGAAAACTTTTGACTCTACTG 57.852 34.615 0.00 0.00 0.00 2.74
9388 10006 9.261180 CATGAGAAAACTTTTGACTCTACTGTA 57.739 33.333 0.00 0.00 0.00 2.74
9431 10049 3.686916 TGATGATGTTGTTCCGGTACA 57.313 42.857 10.19 10.19 0.00 2.90
9434 10052 5.735766 TGATGATGTTGTTCCGGTACATAA 58.264 37.500 15.17 6.76 32.94 1.90
9435 10053 5.583061 TGATGATGTTGTTCCGGTACATAAC 59.417 40.000 15.17 11.47 32.94 1.89
9443 10061 6.718522 TGTTCCGGTACATAACTATGATCA 57.281 37.500 10.19 0.00 37.15 2.92
9462 10080 3.205338 TCATGTGGTGTTGACTCTTGTG 58.795 45.455 0.00 0.00 0.00 3.33
9482 10100 5.361427 TGTGCTACAGCTTTACTACAAACA 58.639 37.500 2.44 0.00 42.66 2.83
9494 10112 6.884096 TTACTACAAACAAGTCGTTCGAAA 57.116 33.333 0.00 0.00 36.59 3.46
9530 10148 6.255215 TCGGATCAAAATATTTTTGAGCGTC 58.745 36.000 18.94 12.56 43.45 5.19
9537 10155 8.967218 TCAAAATATTTTTGAGCGTCTCTTTTG 58.033 29.630 10.77 14.59 33.90 2.44
9552 10170 7.858879 GCGTCTCTTTTGTTTTTGGAAATAGTA 59.141 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 109 4.771745 GGGGGTTAGGAGGGGGCA 62.772 72.222 0.00 0.00 0.00 5.36
150 152 0.994050 AGGGGGAAGGTGATAAGGCC 60.994 60.000 0.00 0.00 0.00 5.19
151 153 0.474614 GAGGGGGAAGGTGATAAGGC 59.525 60.000 0.00 0.00 0.00 4.35
152 154 0.759346 CGAGGGGGAAGGTGATAAGG 59.241 60.000 0.00 0.00 0.00 2.69
153 155 0.759346 CCGAGGGGGAAGGTGATAAG 59.241 60.000 0.00 0.00 38.47 1.73
154 156 0.043637 ACCGAGGGGGAAGGTGATAA 59.956 55.000 0.00 0.00 39.97 1.75
155 157 0.398098 GACCGAGGGGGAAGGTGATA 60.398 60.000 0.00 0.00 38.57 2.15
156 158 1.689582 GACCGAGGGGGAAGGTGAT 60.690 63.158 0.00 0.00 38.57 3.06
157 159 2.284405 GACCGAGGGGGAAGGTGA 60.284 66.667 0.00 0.00 38.57 4.02
168 170 1.000486 TTGGAGGGAGGAGACCGAG 60.000 63.158 0.00 0.00 0.00 4.63
213 228 3.330720 GTGGGGGTGGAGGTGGAG 61.331 72.222 0.00 0.00 0.00 3.86
214 229 4.995058 GGTGGGGGTGGAGGTGGA 62.995 72.222 0.00 0.00 0.00 4.02
732 793 1.006571 GAAGGCGTCCGTGTTGAGA 60.007 57.895 0.00 0.00 0.00 3.27
850 911 3.080121 CCGCTCCAGCTCCTCCTT 61.080 66.667 0.00 0.00 39.32 3.36
863 924 3.854669 CCCTCTCGATTGCCCGCT 61.855 66.667 0.00 0.00 0.00 5.52
865 926 4.241555 CCCCCTCTCGATTGCCCG 62.242 72.222 0.00 0.00 0.00 6.13
866 927 2.768344 TCCCCCTCTCGATTGCCC 60.768 66.667 0.00 0.00 0.00 5.36
868 929 2.812619 CCCTCCCCCTCTCGATTGC 61.813 68.421 0.00 0.00 0.00 3.56
869 930 1.075226 TCCCTCCCCCTCTCGATTG 60.075 63.158 0.00 0.00 0.00 2.67
870 931 1.234529 CTCCCTCCCCCTCTCGATT 59.765 63.158 0.00 0.00 0.00 3.34
871 932 2.939298 CTCCCTCCCCCTCTCGAT 59.061 66.667 0.00 0.00 0.00 3.59
1023 1084 2.047274 TTGACGTAGGGCAGCTGC 60.047 61.111 30.88 30.88 41.14 5.25
1285 1346 1.201414 AGAAGCGGGCCATTAAAAACG 59.799 47.619 4.39 0.00 0.00 3.60
1289 1350 1.749286 GCCTAGAAGCGGGCCATTAAA 60.749 52.381 4.39 0.00 42.30 1.52
1292 1353 2.193248 GCCTAGAAGCGGGCCATT 59.807 61.111 4.39 0.00 42.30 3.16
1300 1361 1.328986 GATGAAGTTGCGCCTAGAAGC 59.671 52.381 4.18 0.00 0.00 3.86
1345 1406 8.634444 ACGAGCTATTTCTAAGTCATGAGTAAT 58.366 33.333 2.79 2.69 0.00 1.89
1346 1407 7.997482 ACGAGCTATTTCTAAGTCATGAGTAA 58.003 34.615 2.79 0.00 0.00 2.24
1347 1408 7.569639 ACGAGCTATTTCTAAGTCATGAGTA 57.430 36.000 2.79 0.00 0.00 2.59
1348 1409 6.458232 ACGAGCTATTTCTAAGTCATGAGT 57.542 37.500 0.00 0.00 0.00 3.41
1349 1410 7.763172 AAACGAGCTATTTCTAAGTCATGAG 57.237 36.000 0.00 0.00 0.00 2.90
1350 1411 8.248253 TGTAAACGAGCTATTTCTAAGTCATGA 58.752 33.333 0.00 0.00 0.00 3.07
1351 1412 8.407457 TGTAAACGAGCTATTTCTAAGTCATG 57.593 34.615 0.00 0.00 0.00 3.07
1377 1447 7.834068 TCACTAAGTCTAAATCTCACATTGC 57.166 36.000 0.00 0.00 0.00 3.56
1388 1458 6.681729 AAGGTCACCATCACTAAGTCTAAA 57.318 37.500 0.00 0.00 0.00 1.85
1393 1463 4.838986 ACACTAAGGTCACCATCACTAAGT 59.161 41.667 0.00 0.00 0.00 2.24
1395 1465 6.921486 TTACACTAAGGTCACCATCACTAA 57.079 37.500 0.00 0.00 0.00 2.24
1432 1502 2.143122 CTGCACAACAACGTCTATGGT 58.857 47.619 0.00 0.00 0.00 3.55
1433 1503 1.464608 CCTGCACAACAACGTCTATGG 59.535 52.381 0.00 0.00 0.00 2.74
1435 1505 1.808411 CCCTGCACAACAACGTCTAT 58.192 50.000 0.00 0.00 0.00 1.98
1437 1507 2.186826 GCCCTGCACAACAACGTCT 61.187 57.895 0.00 0.00 0.00 4.18
1439 1509 1.319614 AAAGCCCTGCACAACAACGT 61.320 50.000 0.00 0.00 0.00 3.99
1440 1510 0.594796 GAAAGCCCTGCACAACAACG 60.595 55.000 0.00 0.00 0.00 4.10
1441 1511 0.459489 TGAAAGCCCTGCACAACAAC 59.541 50.000 0.00 0.00 0.00 3.32
1442 1512 1.412079 ATGAAAGCCCTGCACAACAA 58.588 45.000 0.00 0.00 0.00 2.83
1443 1513 1.412079 AATGAAAGCCCTGCACAACA 58.588 45.000 0.00 0.00 0.00 3.33
1444 1514 2.407090 GAAATGAAAGCCCTGCACAAC 58.593 47.619 0.00 0.00 0.00 3.32
1445 1515 1.344114 GGAAATGAAAGCCCTGCACAA 59.656 47.619 0.00 0.00 0.00 3.33
1446 1516 0.968405 GGAAATGAAAGCCCTGCACA 59.032 50.000 0.00 0.00 0.00 4.57
1447 1517 0.968405 TGGAAATGAAAGCCCTGCAC 59.032 50.000 0.00 0.00 0.00 4.57
1448 1518 1.826720 GATGGAAATGAAAGCCCTGCA 59.173 47.619 0.00 0.00 0.00 4.41
1449 1519 2.105766 AGATGGAAATGAAAGCCCTGC 58.894 47.619 0.00 0.00 0.00 4.85
1450 1520 3.129988 GTCAGATGGAAATGAAAGCCCTG 59.870 47.826 0.00 0.00 0.00 4.45
1451 1521 3.011032 AGTCAGATGGAAATGAAAGCCCT 59.989 43.478 0.00 0.00 0.00 5.19
1452 1522 3.359950 AGTCAGATGGAAATGAAAGCCC 58.640 45.455 0.00 0.00 0.00 5.19
1453 1523 4.219288 ACAAGTCAGATGGAAATGAAAGCC 59.781 41.667 0.00 0.00 0.00 4.35
1454 1524 5.048504 TGACAAGTCAGATGGAAATGAAAGC 60.049 40.000 0.00 0.00 34.14 3.51
1455 1525 6.564709 TGACAAGTCAGATGGAAATGAAAG 57.435 37.500 0.00 0.00 34.14 2.62
1456 1526 6.320926 TGTTGACAAGTCAGATGGAAATGAAA 59.679 34.615 2.87 0.00 41.13 2.69
1457 1527 5.827267 TGTTGACAAGTCAGATGGAAATGAA 59.173 36.000 2.87 0.00 41.13 2.57
1458 1528 5.375773 TGTTGACAAGTCAGATGGAAATGA 58.624 37.500 2.87 0.00 41.13 2.57
1459 1529 5.694231 TGTTGACAAGTCAGATGGAAATG 57.306 39.130 2.87 0.00 41.13 2.32
1494 1564 5.226396 CCAAACTTTTAATTCGGCATGTCA 58.774 37.500 0.00 0.00 0.00 3.58
1523 1593 8.303876 GCTCCTCCAATTTTGTTAACTTCATAA 58.696 33.333 7.22 0.00 0.00 1.90
1524 1594 7.669722 AGCTCCTCCAATTTTGTTAACTTCATA 59.330 33.333 7.22 0.00 0.00 2.15
1538 1608 3.201487 TGATGTCATCAGCTCCTCCAATT 59.799 43.478 11.62 0.00 33.59 2.32
1550 1620 2.750712 CACCAGTTGCATGATGTCATCA 59.249 45.455 17.70 17.70 44.55 3.07
1553 1623 1.073603 TCCACCAGTTGCATGATGTCA 59.926 47.619 0.00 0.00 0.00 3.58
1559 1629 0.108992 GCACATCCACCAGTTGCATG 60.109 55.000 0.00 0.00 0.00 4.06
1597 1667 7.656948 CACCACAACACAATTTGGAGATAAAAT 59.343 33.333 0.78 0.00 33.02 1.82
1598 1668 6.983307 CACCACAACACAATTTGGAGATAAAA 59.017 34.615 0.78 0.00 33.02 1.52
1599 1669 6.097554 ACACCACAACACAATTTGGAGATAAA 59.902 34.615 0.78 0.00 33.02 1.40
1600 1670 5.596361 ACACCACAACACAATTTGGAGATAA 59.404 36.000 0.78 0.00 33.02 1.75
1601 1671 5.009510 CACACCACAACACAATTTGGAGATA 59.990 40.000 0.78 0.00 33.02 1.98
1617 1687 3.430236 CGTTATCCAGCTATCACACCACA 60.430 47.826 0.00 0.00 0.00 4.17
1636 1706 4.510571 AGACAAAGTAGGTCAACAACGTT 58.489 39.130 0.00 0.00 37.74 3.99
1638 1708 6.780706 AATAGACAAAGTAGGTCAACAACG 57.219 37.500 0.00 0.00 37.74 4.10
1658 1728 9.948964 CCACATGATGTCTATTGGATCTTAATA 57.051 33.333 0.00 0.00 0.00 0.98
1679 1751 0.398381 ACTTGGCAACCAACCCACAT 60.398 50.000 0.00 0.00 38.75 3.21
1684 1756 0.467290 TCTCCACTTGGCAACCAACC 60.467 55.000 0.00 0.00 38.75 3.77
1693 1765 3.181447 ACATAGATGCCATCTCCACTTGG 60.181 47.826 11.20 0.00 40.76 3.61
1720 1792 6.039616 GTGCCAGAAAACTTATTGTCAAACA 58.960 36.000 0.00 0.00 0.00 2.83
1728 1800 6.040842 ACATTGTCAGTGCCAGAAAACTTATT 59.959 34.615 0.00 0.00 0.00 1.40
1732 1804 3.067180 CACATTGTCAGTGCCAGAAAACT 59.933 43.478 0.00 0.00 0.00 2.66
1744 1816 2.439409 TGGCAATCCTCACATTGTCAG 58.561 47.619 0.00 0.00 42.22 3.51
1756 1828 4.583489 ACATGATTTCTGATCTGGCAATCC 59.417 41.667 0.00 0.00 0.00 3.01
1769 1850 2.978156 ACACCCCACACATGATTTCT 57.022 45.000 0.00 0.00 0.00 2.52
1781 1862 8.950480 TGTCATCCTTAAATATAATACACCCCA 58.050 33.333 0.00 0.00 0.00 4.96
1792 1873 7.125391 TCCAAGGCTTTGTCATCCTTAAATAT 58.875 34.615 7.87 0.00 38.08 1.28
1799 1880 3.463048 AATCCAAGGCTTTGTCATCCT 57.537 42.857 7.87 0.00 32.21 3.24
1876 1957 6.957631 TCAAACTCCAGTCCACAACATATAT 58.042 36.000 0.00 0.00 0.00 0.86
1940 2025 3.244215 TGACACTAAGGCCAAGTGAAGAG 60.244 47.826 33.12 15.07 45.89 2.85
1950 2035 4.649088 AAAAACAACTGACACTAAGGCC 57.351 40.909 0.00 0.00 0.00 5.19
2134 2246 4.090761 TCTGTGCTTCAGTCAATTTCCT 57.909 40.909 8.75 0.00 43.97 3.36
2136 2248 4.023365 AGCTTCTGTGCTTCAGTCAATTTC 60.023 41.667 8.75 0.00 43.97 2.17
2247 2359 8.281212 ACCTTCCATAACATATGAGACAAAAC 57.719 34.615 10.38 0.00 0.00 2.43
2316 2428 4.799949 CACAAATGCCGAATCCAATAACAG 59.200 41.667 0.00 0.00 0.00 3.16
2321 2433 2.298411 GCACAAATGCCGAATCCAAT 57.702 45.000 0.00 0.00 46.97 3.16
2351 2463 2.238646 AGAACTGTCAGGTGTTTGGTCA 59.761 45.455 4.53 0.00 0.00 4.02
2442 2555 4.563374 GCAATAAAGGCAAACACTGGGAAT 60.563 41.667 0.00 0.00 0.00 3.01
2475 2588 0.041400 CAGTGCGTGTCAATGCGAAA 60.041 50.000 0.00 0.00 41.56 3.46
2530 2643 8.724229 CATTGAACAGAAATGTCAGAACAGATA 58.276 33.333 0.00 0.00 39.20 1.98
2695 2809 5.069119 GGAAAAGAAAACAAGTGGATGGTCT 59.931 40.000 0.00 0.00 0.00 3.85
2729 2843 4.931601 TGACACTCGAGAAAATCCAGATTG 59.068 41.667 21.68 4.50 0.00 2.67
2865 2981 1.873591 ACGTGTCTAGCCTGCAAAAAG 59.126 47.619 0.00 0.00 0.00 2.27
3055 3174 4.002982 TGGTTCGAAAATGATCACCAGAG 58.997 43.478 0.00 0.00 30.66 3.35
3221 3340 1.467734 GCAGGCTGTGTCAAAGATGAG 59.532 52.381 17.16 0.00 35.88 2.90
3245 3364 8.432359 GCCAAAGGAAACGAGTTTAAAAATATG 58.568 33.333 0.76 0.00 32.11 1.78
3251 3370 4.985538 TGCCAAAGGAAACGAGTTTAAA 57.014 36.364 0.76 0.00 32.11 1.52
3266 3385 0.250510 TGACGTGCCACTATGCCAAA 60.251 50.000 0.00 0.00 0.00 3.28
3346 3465 8.636213 ACATCAGAAATAATCATTAAAGCAGGG 58.364 33.333 0.00 0.00 0.00 4.45
3600 3726 7.064728 AGAGCGTATTATGAAAACTGAAGGAAC 59.935 37.037 0.00 0.00 0.00 3.62
3657 3785 5.933187 TCTATAAACAAAACAGAAGCGCA 57.067 34.783 11.47 0.00 0.00 6.09
3673 3801 7.844779 AGGTTGTTCAGGTAGAGGAATCTATAA 59.155 37.037 0.00 0.00 0.00 0.98
3768 3896 0.392060 ATCGCTCAGCATGCAGTTCA 60.392 50.000 21.98 0.00 34.76 3.18
3896 4024 4.798882 ACCTATTCACAAAGGTGGAAACA 58.201 39.130 0.00 0.00 44.53 2.83
4234 4362 4.450419 GCTAGACATTGAAATGGATCCTCG 59.550 45.833 14.23 0.00 40.70 4.63
4413 4541 7.079451 TCAATCCTAGGATATTGACCTTTCC 57.921 40.000 24.78 0.00 37.23 3.13
4456 4585 2.099141 CACCTCGGTGCCCATATATG 57.901 55.000 5.68 5.68 39.39 1.78
4569 4700 3.068590 CCCATTGCATGAACCATCCTAAC 59.931 47.826 0.00 0.00 0.00 2.34
4631 4762 3.455910 TGCTCAGTTGGTATAGCAGGAAT 59.544 43.478 4.57 0.00 39.92 3.01
4751 4888 9.956720 AGACAGTGAAGAAAATTCATGTAAAAG 57.043 29.630 0.00 0.00 0.00 2.27
4821 4962 9.881529 GAATTTCAAGAAAAATAGCATGCAAAA 57.118 25.926 21.98 5.05 33.56 2.44
4992 5133 3.055747 TCCACAAACGTAGTGCATATGGA 60.056 43.478 13.83 9.41 45.00 3.41
4995 5136 3.312421 GCATCCACAAACGTAGTGCATAT 59.688 43.478 13.83 5.99 45.00 1.78
5006 5147 3.758931 GGCGGGGCATCCACAAAC 61.759 66.667 0.00 0.00 34.36 2.93
5034 5175 3.572715 ATCCTTCCGTGGGGGTGGA 62.573 63.158 0.00 0.00 41.27 4.02
5035 5176 3.015145 ATCCTTCCGTGGGGGTGG 61.015 66.667 0.00 0.00 37.00 4.61
5036 5177 1.847798 TTGATCCTTCCGTGGGGGTG 61.848 60.000 0.00 0.00 37.00 4.61
5037 5178 1.540367 TTGATCCTTCCGTGGGGGT 60.540 57.895 0.00 0.00 37.00 4.95
5038 5179 1.077716 GTTGATCCTTCCGTGGGGG 60.078 63.158 0.00 0.00 37.02 5.40
5039 5180 1.077716 GGTTGATCCTTCCGTGGGG 60.078 63.158 0.00 0.00 0.00 4.96
5040 5181 0.037590 TTGGTTGATCCTTCCGTGGG 59.962 55.000 0.00 0.00 37.07 4.61
5188 5528 9.682465 AGGTAAAAGTTTTCCCTAAGACATATC 57.318 33.333 10.55 0.00 0.00 1.63
5196 5536 9.436866 AATGGTAAAGGTAAAAGTTTTCCCTAA 57.563 29.630 12.43 2.51 0.00 2.69
5281 5622 2.284190 TCTTCACGCACAATTGTCACA 58.716 42.857 8.48 0.00 0.00 3.58
5450 5794 0.909610 CAAGGTCTGCCCTCCCTACA 60.910 60.000 0.00 0.00 45.47 2.74
5451 5795 0.617820 TCAAGGTCTGCCCTCCCTAC 60.618 60.000 0.00 0.00 45.47 3.18
5464 5808 1.675552 CGGTTGTTCAGGTTCAAGGT 58.324 50.000 0.00 0.00 0.00 3.50
5596 6073 4.201822 GCACTAGGGAAAAGCGTTATGAAG 60.202 45.833 0.00 0.00 0.00 3.02
5771 6248 1.712977 CTTGATTGAGGCAGAGCGGC 61.713 60.000 0.00 0.00 41.61 6.53
6036 6514 2.293399 GGAGTCACAAAAATCGCCAGTT 59.707 45.455 0.00 0.00 0.00 3.16
6201 6680 5.775686 TGTCTCTCCAATGCAATCAAAAAG 58.224 37.500 0.00 0.00 0.00 2.27
6246 6738 6.433847 TCCAAAGTTACCTTCATCAGAGAA 57.566 37.500 0.00 0.00 0.00 2.87
6406 6898 1.693062 AGGAAAATGCAATGCCACACA 59.307 42.857 1.53 0.00 0.00 3.72
6457 6949 4.319177 ACACTGTCAGAGCCTTTTGATAC 58.681 43.478 6.91 0.00 0.00 2.24
6539 7031 0.536006 GCTGCACAACTGGAAGACCT 60.536 55.000 0.00 0.00 37.43 3.85
6630 7123 7.811236 TGTGTACTGCTTGTTTAGTGTAGATAC 59.189 37.037 0.00 0.00 0.00 2.24
6845 7364 8.877864 AAACAAATATGGTCCAGATTCAGTAA 57.122 30.769 12.11 0.00 0.00 2.24
6846 7365 8.877864 AAAACAAATATGGTCCAGATTCAGTA 57.122 30.769 12.11 0.00 0.00 2.74
6927 7448 8.624701 ATTTTAACTTGAATGCATCTCAATCG 57.375 30.769 18.37 13.00 32.53 3.34
6975 7496 5.992829 TGGCAACGAAGACAAAATAGTAGAA 59.007 36.000 0.00 0.00 42.51 2.10
7218 7739 9.722184 ATCATATGTGAACTATCAAGAGAATGG 57.278 33.333 1.90 0.00 38.01 3.16
7308 7830 7.992180 ACTAAAATATTTGTGCTAGCAATGC 57.008 32.000 21.29 8.03 0.00 3.56
7585 8108 2.500098 CAAGTAATTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
7586 8109 2.236395 ACAAGTAATTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
7587 8110 3.522553 GACAAGTAATTCCGGACAGAGG 58.477 50.000 1.83 0.00 0.00 3.69
7588 8111 3.179830 CGACAAGTAATTCCGGACAGAG 58.820 50.000 1.83 0.00 0.00 3.35
7589 8112 2.673043 GCGACAAGTAATTCCGGACAGA 60.673 50.000 1.83 0.00 0.00 3.41
7590 8113 1.659098 GCGACAAGTAATTCCGGACAG 59.341 52.381 1.83 0.00 0.00 3.51
7591 8114 1.673626 GGCGACAAGTAATTCCGGACA 60.674 52.381 1.83 0.00 0.00 4.02
7592 8115 1.004595 GGCGACAAGTAATTCCGGAC 58.995 55.000 1.83 0.00 0.00 4.79
7593 8116 0.458889 CGGCGACAAGTAATTCCGGA 60.459 55.000 0.00 0.00 33.85 5.14
7594 8117 0.458889 TCGGCGACAAGTAATTCCGG 60.459 55.000 4.99 0.00 37.65 5.14
7595 8118 1.352114 TTCGGCGACAAGTAATTCCG 58.648 50.000 10.16 0.00 38.34 4.30
7596 8119 3.486875 CCATTTCGGCGACAAGTAATTCC 60.487 47.826 10.16 0.00 0.00 3.01
7597 8120 3.372822 TCCATTTCGGCGACAAGTAATTC 59.627 43.478 10.16 0.00 33.14 2.17
7598 8121 3.340034 TCCATTTCGGCGACAAGTAATT 58.660 40.909 10.16 0.00 33.14 1.40
7599 8122 2.980568 TCCATTTCGGCGACAAGTAAT 58.019 42.857 10.16 3.05 33.14 1.89
7600 8123 2.459060 TCCATTTCGGCGACAAGTAA 57.541 45.000 10.16 0.01 33.14 2.24
7601 8124 2.684001 ATCCATTTCGGCGACAAGTA 57.316 45.000 10.16 0.00 33.14 2.24
7602 8125 2.684001 TATCCATTTCGGCGACAAGT 57.316 45.000 10.16 0.00 33.14 3.16
7603 8126 4.349663 TTTTATCCATTTCGGCGACAAG 57.650 40.909 10.16 0.00 33.14 3.16
7604 8127 4.768130 TTTTTATCCATTTCGGCGACAA 57.232 36.364 10.16 8.07 33.14 3.18
7605 8128 4.439426 CCATTTTTATCCATTTCGGCGACA 60.439 41.667 10.16 2.52 33.14 4.35
7606 8129 4.041723 CCATTTTTATCCATTTCGGCGAC 58.958 43.478 10.16 0.00 33.14 5.19
7607 8130 3.948473 TCCATTTTTATCCATTTCGGCGA 59.052 39.130 4.99 4.99 33.14 5.54
7608 8131 4.300189 TCCATTTTTATCCATTTCGGCG 57.700 40.909 0.00 0.00 33.14 6.46
7609 8132 5.600696 ACATCCATTTTTATCCATTTCGGC 58.399 37.500 0.00 0.00 33.14 5.54
7610 8133 8.796475 AGATACATCCATTTTTATCCATTTCGG 58.204 33.333 0.00 0.00 0.00 4.30
7638 8161 9.733556 TGGATGTATGTAGACATGTTTTAGTTT 57.266 29.630 0.00 0.00 40.18 2.66
7639 8162 9.905713 ATGGATGTATGTAGACATGTTTTAGTT 57.094 29.630 0.00 0.00 40.18 2.24
7640 8163 9.905713 AATGGATGTATGTAGACATGTTTTAGT 57.094 29.630 0.00 0.00 40.18 2.24
7643 8166 9.466497 AGAAATGGATGTATGTAGACATGTTTT 57.534 29.630 0.00 0.00 40.18 2.43
7644 8167 9.466497 AAGAAATGGATGTATGTAGACATGTTT 57.534 29.630 0.00 0.00 40.18 2.83
7645 8168 9.466497 AAAGAAATGGATGTATGTAGACATGTT 57.534 29.630 0.00 0.00 40.18 2.71
7646 8169 8.896744 CAAAGAAATGGATGTATGTAGACATGT 58.103 33.333 0.00 0.00 40.18 3.21
7647 8170 9.112725 TCAAAGAAATGGATGTATGTAGACATG 57.887 33.333 5.39 0.00 40.18 3.21
7648 8171 9.113838 GTCAAAGAAATGGATGTATGTAGACAT 57.886 33.333 0.08 0.08 42.82 3.06
7649 8172 8.100164 TGTCAAAGAAATGGATGTATGTAGACA 58.900 33.333 0.00 0.00 0.00 3.41
7650 8173 8.492673 TGTCAAAGAAATGGATGTATGTAGAC 57.507 34.615 0.00 0.00 0.00 2.59
7651 8174 9.166173 CTTGTCAAAGAAATGGATGTATGTAGA 57.834 33.333 0.00 0.00 35.19 2.59
7652 8175 8.950210 ACTTGTCAAAGAAATGGATGTATGTAG 58.050 33.333 0.00 0.00 36.84 2.74
7653 8176 8.862325 ACTTGTCAAAGAAATGGATGTATGTA 57.138 30.769 0.00 0.00 36.84 2.29
7654 8177 7.765695 ACTTGTCAAAGAAATGGATGTATGT 57.234 32.000 0.00 0.00 36.84 2.29
7658 8181 8.306761 GGAAATACTTGTCAAAGAAATGGATGT 58.693 33.333 0.00 0.00 36.84 3.06
7659 8182 7.485913 CGGAAATACTTGTCAAAGAAATGGATG 59.514 37.037 0.00 0.00 36.84 3.51
7660 8183 7.362920 CCGGAAATACTTGTCAAAGAAATGGAT 60.363 37.037 0.00 0.00 36.84 3.41
7661 8184 6.072175 CCGGAAATACTTGTCAAAGAAATGGA 60.072 38.462 0.00 0.00 36.84 3.41
7662 8185 6.072175 TCCGGAAATACTTGTCAAAGAAATGG 60.072 38.462 0.00 0.00 36.84 3.16
7663 8186 6.801862 GTCCGGAAATACTTGTCAAAGAAATG 59.198 38.462 5.23 0.00 36.84 2.32
7664 8187 6.348213 CGTCCGGAAATACTTGTCAAAGAAAT 60.348 38.462 5.23 0.00 36.84 2.17
7665 8188 5.049954 CGTCCGGAAATACTTGTCAAAGAAA 60.050 40.000 5.23 0.00 36.84 2.52
7666 8189 4.449743 CGTCCGGAAATACTTGTCAAAGAA 59.550 41.667 5.23 0.00 36.84 2.52
7667 8190 3.991773 CGTCCGGAAATACTTGTCAAAGA 59.008 43.478 5.23 0.00 36.84 2.52
7668 8191 3.124636 CCGTCCGGAAATACTTGTCAAAG 59.875 47.826 5.23 0.00 37.11 2.77
7669 8192 3.068560 CCGTCCGGAAATACTTGTCAAA 58.931 45.455 5.23 0.00 37.50 2.69
7670 8193 2.299582 TCCGTCCGGAAATACTTGTCAA 59.700 45.455 5.23 0.00 42.05 3.18
7671 8194 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
7672 8195 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
7673 8196 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
7674 8197 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
7675 8198 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
7676 8199 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
7677 8200 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
7678 8201 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
7679 8202 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
7680 8203 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
7681 8204 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
7682 8205 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
7683 8206 1.041447 AATGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
7684 8207 0.822164 AAATGTACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
7685 8208 3.007635 CAAAAATGTACTCCCTCCGTCC 58.992 50.000 0.00 0.00 0.00 4.79
7686 8209 3.007635 CCAAAAATGTACTCCCTCCGTC 58.992 50.000 0.00 0.00 0.00 4.79
7687 8210 2.374170 ACCAAAAATGTACTCCCTCCGT 59.626 45.455 0.00 0.00 0.00 4.69
7688 8211 3.067684 ACCAAAAATGTACTCCCTCCG 57.932 47.619 0.00 0.00 0.00 4.63
7689 8212 6.096423 GGAATAACCAAAAATGTACTCCCTCC 59.904 42.308 0.00 0.00 38.79 4.30
7690 8213 6.661805 TGGAATAACCAAAAATGTACTCCCTC 59.338 38.462 0.00 0.00 46.75 4.30
7691 8214 6.557568 TGGAATAACCAAAAATGTACTCCCT 58.442 36.000 0.00 0.00 46.75 4.20
7692 8215 6.844097 TGGAATAACCAAAAATGTACTCCC 57.156 37.500 0.00 0.00 46.75 4.30
7710 8233 1.754803 CTCAGTGGCAATGCATGGAAT 59.245 47.619 10.58 0.00 0.00 3.01
7723 8246 0.109342 AGAACACCTTGCCTCAGTGG 59.891 55.000 0.00 0.00 35.79 4.00
7813 8339 2.363359 CCAACAGCAAGAAAAGGAAGCT 59.637 45.455 0.00 0.00 35.63 3.74
7885 8458 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
7886 8459 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
7887 8460 2.928116 GGACAAGTATTTTCGGACGGAG 59.072 50.000 0.00 0.00 0.00 4.63
7888 8461 2.564062 AGGACAAGTATTTTCGGACGGA 59.436 45.455 0.00 0.00 0.00 4.69
7889 8462 2.928116 GAGGACAAGTATTTTCGGACGG 59.072 50.000 0.00 0.00 0.00 4.79
7890 8463 3.581755 TGAGGACAAGTATTTTCGGACG 58.418 45.455 0.00 0.00 0.00 4.79
7891 8464 5.934935 TTTGAGGACAAGTATTTTCGGAC 57.065 39.130 0.00 0.00 37.32 4.79
7892 8465 6.072175 CCATTTTGAGGACAAGTATTTTCGGA 60.072 38.462 0.00 0.00 37.32 4.55
7893 8466 6.072175 TCCATTTTGAGGACAAGTATTTTCGG 60.072 38.462 0.00 0.00 37.32 4.30
7894 8467 6.908825 TCCATTTTGAGGACAAGTATTTTCG 58.091 36.000 0.00 0.00 37.32 3.46
7906 8479 4.551671 TCCCTTTTTGTCCATTTTGAGGA 58.448 39.130 0.00 0.00 0.00 3.71
7907 8480 4.953940 TCCCTTTTTGTCCATTTTGAGG 57.046 40.909 0.00 0.00 0.00 3.86
7908 8481 5.857268 ACATCCCTTTTTGTCCATTTTGAG 58.143 37.500 0.00 0.00 0.00 3.02
7909 8482 5.885449 ACATCCCTTTTTGTCCATTTTGA 57.115 34.783 0.00 0.00 0.00 2.69
7910 8483 7.614494 AGATACATCCCTTTTTGTCCATTTTG 58.386 34.615 0.00 0.00 0.00 2.44
7911 8484 7.797121 AGATACATCCCTTTTTGTCCATTTT 57.203 32.000 0.00 0.00 0.00 1.82
7912 8485 8.336235 TCTAGATACATCCCTTTTTGTCCATTT 58.664 33.333 0.00 0.00 0.00 2.32
7913 8486 7.872138 TCTAGATACATCCCTTTTTGTCCATT 58.128 34.615 0.00 0.00 0.00 3.16
7914 8487 7.451731 TCTAGATACATCCCTTTTTGTCCAT 57.548 36.000 0.00 0.00 0.00 3.41
7915 8488 6.884472 TCTAGATACATCCCTTTTTGTCCA 57.116 37.500 0.00 0.00 0.00 4.02
7916 8489 7.339482 AGTTCTAGATACATCCCTTTTTGTCC 58.661 38.462 0.00 0.00 0.00 4.02
7917 8490 9.886132 TTAGTTCTAGATACATCCCTTTTTGTC 57.114 33.333 0.00 0.00 0.00 3.18
7969 8542 9.801873 CCGGAAATACTTGTCATCAAAATAAAT 57.198 29.630 0.00 0.00 32.87 1.40
7970 8543 9.015367 TCCGGAAATACTTGTCATCAAAATAAA 57.985 29.630 0.00 0.00 32.87 1.40
7971 8544 8.455682 GTCCGGAAATACTTGTCATCAAAATAA 58.544 33.333 5.23 0.00 32.87 1.40
7972 8545 7.201574 CGTCCGGAAATACTTGTCATCAAAATA 60.202 37.037 5.23 0.00 32.87 1.40
7973 8546 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
7974 8547 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
7975 8548 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
7976 8549 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
7977 8550 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
7978 8551 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
7979 8552 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
7980 8553 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
7981 8554 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
7982 8555 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
7983 8556 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
7984 8557 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
7985 8558 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
7986 8559 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
7987 8560 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
7988 8561 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
7989 8562 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
7990 8563 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
7991 8564 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
7992 8565 1.379576 AAGTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
7993 8566 0.964358 ACAAGTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
7994 8567 1.264295 AACAAGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
7995 8568 4.525912 TTAAACAAGTACTCCCTCCGTC 57.474 45.455 0.00 0.00 0.00 4.79
7996 8569 4.961438 TTTAAACAAGTACTCCCTCCGT 57.039 40.909 0.00 0.00 0.00 4.69
7997 8570 6.171213 AGAATTTAAACAAGTACTCCCTCCG 58.829 40.000 0.00 0.00 0.00 4.63
7998 8571 7.166167 TGAGAATTTAAACAAGTACTCCCTCC 58.834 38.462 0.00 0.00 0.00 4.30
7999 8572 8.794335 ATGAGAATTTAAACAAGTACTCCCTC 57.206 34.615 0.00 0.00 0.00 4.30
8026 8599 4.929819 TTAGCACTACTGACTGAACACA 57.070 40.909 0.00 0.00 0.00 3.72
8070 8643 8.876275 GCAAAATCCTATGCTATTTGATTTGA 57.124 30.769 0.00 0.00 39.46 2.69
8160 8733 2.127651 TTTGGACCCTAACAGGAGGT 57.872 50.000 0.00 0.00 37.67 3.85
8161 8734 4.412199 TCATATTTGGACCCTAACAGGAGG 59.588 45.833 0.00 0.00 37.67 4.30
8162 8735 5.630415 TCATATTTGGACCCTAACAGGAG 57.370 43.478 0.00 0.00 37.67 3.69
8163 8736 5.669904 TCATCATATTTGGACCCTAACAGGA 59.330 40.000 0.00 0.00 37.67 3.86
8185 8758 2.842496 AGCTTGGATCCTGATCAACTCA 59.158 45.455 14.23 0.00 39.54 3.41
8214 8787 7.984391 TCACACTAAAATTACACCATATGCTG 58.016 34.615 0.00 0.00 0.00 4.41
8280 8853 9.554395 TCCAGAATCGACTTAATTTGCATTATA 57.446 29.630 0.00 0.00 0.00 0.98
8302 8875 4.843220 AGCTTTTGAAGTCAACATCCAG 57.157 40.909 0.00 0.00 35.28 3.86
8384 8957 1.895131 ACCCAAAATGAGTCATGCACC 59.105 47.619 6.34 0.00 0.00 5.01
8524 9118 3.753272 GCAGCTGAAGAACAAAGTATGGA 59.247 43.478 20.43 0.00 0.00 3.41
8526 9120 4.754372 TGCAGCTGAAGAACAAAGTATG 57.246 40.909 20.43 0.00 0.00 2.39
8546 9140 7.820386 AGAGCATTAGAGAATAATCTGCTGATG 59.180 37.037 6.88 3.18 35.54 3.07
8710 9306 5.653330 TGACATGTTACGTATAACTCTCCCA 59.347 40.000 0.00 0.00 41.24 4.37
8739 9337 1.448893 GCTATCCAACCACGCCGAA 60.449 57.895 0.00 0.00 0.00 4.30
8817 9417 0.466922 CTCACCTTCATGGCCCATCC 60.467 60.000 0.00 0.00 40.22 3.51
8827 9427 3.953612 AGATTTTGCAACACTCACCTTCA 59.046 39.130 0.00 0.00 0.00 3.02
8832 9432 3.245990 GCCAAAGATTTTGCAACACTCAC 59.754 43.478 0.00 0.00 0.00 3.51
8838 9438 6.619232 GCTTCTTATGCCAAAGATTTTGCAAC 60.619 38.462 0.00 0.00 41.31 4.17
8841 9441 4.931002 TGCTTCTTATGCCAAAGATTTTGC 59.069 37.500 0.00 0.00 35.48 3.68
8855 9455 4.201990 GCTTGCTGCTGTAATGCTTCTTAT 60.202 41.667 0.00 0.00 38.95 1.73
8857 9457 2.094854 GCTTGCTGCTGTAATGCTTCTT 60.095 45.455 0.00 0.00 38.95 2.52
8897 9498 2.360475 GCTTCTCCAGGTGTGCCC 60.360 66.667 0.00 0.00 34.57 5.36
8898 9499 2.360475 GGCTTCTCCAGGTGTGCC 60.360 66.667 10.82 10.82 34.01 5.01
8900 9501 1.002868 CCAGGCTTCTCCAGGTGTG 60.003 63.158 0.00 0.00 36.79 3.82
8901 9502 0.548682 ATCCAGGCTTCTCCAGGTGT 60.549 55.000 0.00 0.00 41.91 4.16
8902 9503 0.107312 CATCCAGGCTTCTCCAGGTG 60.107 60.000 0.00 0.00 41.91 4.00
8903 9504 1.277580 CCATCCAGGCTTCTCCAGGT 61.278 60.000 0.00 0.00 41.91 4.00
8904 9505 1.277580 ACCATCCAGGCTTCTCCAGG 61.278 60.000 0.00 0.00 42.56 4.45
8906 9507 1.075601 AAACCATCCAGGCTTCTCCA 58.924 50.000 0.00 0.00 43.14 3.86
8924 9529 3.509575 AGTTGATTCGCCTATGCCAAAAA 59.490 39.130 0.00 0.00 0.00 1.94
8934 9539 0.179161 CTCGACGAGTTGATTCGCCT 60.179 55.000 16.83 0.00 44.15 5.52
8938 9543 0.173708 AGGGCTCGACGAGTTGATTC 59.826 55.000 24.80 7.93 31.39 2.52
8949 9554 2.032860 GCATGGCTTCTAGGGCTCGA 62.033 60.000 0.00 0.00 0.00 4.04
8950 9555 1.596477 GCATGGCTTCTAGGGCTCG 60.596 63.158 0.00 0.00 0.00 5.03
8952 9557 1.574526 TTGGCATGGCTTCTAGGGCT 61.575 55.000 21.08 0.00 0.00 5.19
8953 9558 0.684153 TTTGGCATGGCTTCTAGGGC 60.684 55.000 21.08 0.00 0.00 5.19
8955 9560 1.684983 CCATTTGGCATGGCTTCTAGG 59.315 52.381 21.08 11.68 31.75 3.02
8958 9563 2.497273 GTTACCATTTGGCATGGCTTCT 59.503 45.455 21.08 1.48 42.82 2.85
8961 9566 1.935799 TGTTACCATTTGGCATGGCT 58.064 45.000 21.08 0.89 42.82 4.75
8962 9567 2.620242 CTTGTTACCATTTGGCATGGC 58.380 47.619 13.29 13.29 42.82 4.40
8977 9587 2.099756 GCTTGTTCAGTTCAGGCTTGTT 59.900 45.455 0.00 0.00 35.52 2.83
8979 9589 1.000938 GGCTTGTTCAGTTCAGGCTTG 60.001 52.381 0.00 0.00 37.88 4.01
8988 9602 1.212935 ACCACTTGAGGCTTGTTCAGT 59.787 47.619 0.00 0.00 0.00 3.41
8995 9609 1.109323 GCACCAACCACTTGAGGCTT 61.109 55.000 0.00 0.00 0.00 4.35
9045 9659 4.219288 GCCTGAATTGAACTTCACATCCTT 59.781 41.667 0.00 0.00 31.98 3.36
9061 9675 1.987807 ATGGTAGCCAGCGCCTGAAT 61.988 55.000 2.29 0.00 36.75 2.57
9083 9697 7.732222 ATTTCATAATTTACCTTGGCCTGAA 57.268 32.000 3.32 0.00 0.00 3.02
9109 9726 5.844004 ACTCTTCACAAGTTGATAACTCGT 58.156 37.500 10.54 0.00 41.91 4.18
9111 9728 6.223852 TGGACTCTTCACAAGTTGATAACTC 58.776 40.000 10.54 0.00 41.91 3.01
9121 9738 2.805099 GCAAGACTGGACTCTTCACAAG 59.195 50.000 0.00 0.00 0.00 3.16
9123 9740 2.042464 AGCAAGACTGGACTCTTCACA 58.958 47.619 0.00 0.00 0.00 3.58
9124 9741 2.411904 CAGCAAGACTGGACTCTTCAC 58.588 52.381 0.00 0.00 43.19 3.18
9154 9771 7.937649 TCTATGGAAAAATTGATCAGCATCAG 58.062 34.615 0.00 0.00 40.28 2.90
9156 9773 8.573885 TCATCTATGGAAAAATTGATCAGCATC 58.426 33.333 0.00 0.00 0.00 3.91
9157 9774 8.473358 TCATCTATGGAAAAATTGATCAGCAT 57.527 30.769 0.00 0.00 0.00 3.79
9158 9775 7.776500 TCTCATCTATGGAAAAATTGATCAGCA 59.224 33.333 0.00 0.00 0.00 4.41
9159 9776 8.162878 TCTCATCTATGGAAAAATTGATCAGC 57.837 34.615 0.00 0.00 0.00 4.26
9160 9777 9.339850 ACTCTCATCTATGGAAAAATTGATCAG 57.660 33.333 0.00 0.00 0.00 2.90
9161 9778 9.690913 AACTCTCATCTATGGAAAAATTGATCA 57.309 29.630 0.00 0.00 0.00 2.92
9163 9780 8.834465 CGAACTCTCATCTATGGAAAAATTGAT 58.166 33.333 0.00 0.00 0.00 2.57
9164 9781 7.824289 ACGAACTCTCATCTATGGAAAAATTGA 59.176 33.333 0.00 0.00 0.00 2.57
9165 9782 7.978982 ACGAACTCTCATCTATGGAAAAATTG 58.021 34.615 0.00 0.00 0.00 2.32
9172 9789 4.141228 AGGGTACGAACTCTCATCTATGGA 60.141 45.833 0.00 0.00 26.00 3.41
9188 9805 7.915397 ACGTATACACAGTAAAATTAGGGTACG 59.085 37.037 3.32 0.00 35.97 3.67
9272 9889 5.761234 GCCCGGATTCTACACATTATTACAA 59.239 40.000 0.73 0.00 0.00 2.41
9386 10004 6.116126 AGGAGACCAAAGATTAGTGCAATAC 58.884 40.000 0.00 0.00 0.00 1.89
9388 10006 5.184892 AGGAGACCAAAGATTAGTGCAAT 57.815 39.130 0.00 0.00 0.00 3.56
9431 10049 7.568349 AGTCAACACCACATGATCATAGTTAT 58.432 34.615 8.15 0.00 0.00 1.89
9434 10052 5.188555 AGAGTCAACACCACATGATCATAGT 59.811 40.000 8.15 6.43 0.00 2.12
9435 10053 5.668471 AGAGTCAACACCACATGATCATAG 58.332 41.667 8.15 5.79 0.00 2.23
9443 10061 1.949525 GCACAAGAGTCAACACCACAT 59.050 47.619 0.00 0.00 0.00 3.21
9462 10080 6.541111 ACTTGTTTGTAGTAAAGCTGTAGC 57.459 37.500 0.00 0.00 42.49 3.58
9494 10112 9.801873 AATATTTTGATCCGAATTCGTTCAAAT 57.198 25.926 33.31 27.55 42.94 2.32
9508 10126 7.475840 AGAGACGCTCAAAAATATTTTGATCC 58.524 34.615 14.04 10.68 37.72 3.36
9516 10134 8.871686 AAAACAAAAGAGACGCTCAAAAATAT 57.128 26.923 9.09 0.00 32.06 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.