Multiple sequence alignment - TraesCS7B01G410700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G410700 chr7B 100.000 3807 0 0 1 3807 679685111 679681305 0.000000e+00 7031.0
1 TraesCS7B01G410700 chr7B 89.171 434 32 5 670 1098 679713676 679713253 9.370000e-146 527.0
2 TraesCS7B01G410700 chr7B 83.162 582 73 13 1090 1651 679713222 679712646 3.390000e-140 508.0
3 TraesCS7B01G410700 chr7B 84.080 402 52 11 993 1387 713099495 713099891 9.980000e-101 377.0
4 TraesCS7B01G410700 chr7B 83.486 109 11 3 2448 2550 725149218 725149325 1.130000e-15 95.3
5 TraesCS7B01G410700 chr7B 96.970 33 0 1 3548 3580 679681503 679681472 2.000000e-03 54.7
6 TraesCS7B01G410700 chr7B 96.970 33 0 1 3609 3640 679681564 679681532 2.000000e-03 54.7
7 TraesCS7B01G410700 chr7A 88.200 1322 97 20 2308 3618 692055084 692053811 0.000000e+00 1522.0
8 TraesCS7B01G410700 chr7A 82.053 1783 190 75 1 1738 692057445 692055748 0.000000e+00 1400.0
9 TraesCS7B01G410700 chr7A 80.629 795 98 26 893 1654 692156033 692155262 7.140000e-157 564.0
10 TraesCS7B01G410700 chr7A 84.629 553 47 18 1775 2293 692055676 692055128 2.030000e-142 516.0
11 TraesCS7B01G410700 chr7A 86.636 434 32 12 670 1098 692131260 692130848 1.250000e-124 457.0
12 TraesCS7B01G410700 chr7A 81.802 577 72 18 1090 1640 692130821 692130252 1.610000e-123 453.0
13 TraesCS7B01G410700 chr7A 84.080 402 52 12 993 1387 712307096 712307492 9.980000e-101 377.0
14 TraesCS7B01G410700 chr7A 96.512 172 5 1 3636 3807 692053177 692053007 2.240000e-72 283.0
15 TraesCS7B01G410700 chr7A 87.692 130 13 2 1783 1911 653508517 653508390 8.520000e-32 148.0
16 TraesCS7B01G410700 chr1B 83.283 664 77 21 995 1639 608996442 608995794 7.090000e-162 580.0
17 TraesCS7B01G410700 chr1B 77.011 435 66 18 2396 2826 608995054 608994650 6.400000e-53 219.0
18 TraesCS7B01G410700 chr1B 87.692 130 13 3 1783 1911 329910899 329910772 8.520000e-32 148.0
19 TraesCS7B01G410700 chr1B 87.692 130 13 3 1783 1911 510294998 510294871 8.520000e-32 148.0
20 TraesCS7B01G410700 chr1A 87.321 489 44 14 1163 1639 541895504 541895022 9.300000e-151 544.0
21 TraesCS7B01G410700 chr1A 92.029 138 11 0 2396 2533 541894277 541894140 1.080000e-45 195.0
22 TraesCS7B01G410700 chr1A 89.000 100 10 1 995 1094 541895713 541895615 5.160000e-24 122.0
23 TraesCS7B01G410700 chr7D 89.327 431 25 7 670 1098 599885133 599884722 4.360000e-144 521.0
24 TraesCS7B01G410700 chr7D 82.686 566 75 12 1104 1651 599884674 599884114 7.400000e-132 481.0
25 TraesCS7B01G410700 chr7D 84.577 402 50 12 993 1387 618679623 618680019 4.610000e-104 388.0
26 TraesCS7B01G410700 chr7D 88.350 206 20 4 1439 1640 110891166 110891371 1.060000e-60 244.0
27 TraesCS7B01G410700 chr7D 93.023 43 3 0 1735 1777 618584219 618584261 3.170000e-06 63.9
28 TraesCS7B01G410700 chr7D 100.000 33 0 0 1745 1777 230590259 230590291 1.140000e-05 62.1
29 TraesCS7B01G410700 chr1D 86.004 493 47 16 1163 1639 445642520 445642034 3.390000e-140 508.0
30 TraesCS7B01G410700 chr1D 89.855 138 14 0 2396 2533 445641307 445641170 1.090000e-40 178.0
31 TraesCS7B01G410700 chr1D 89.000 100 10 1 995 1094 445642722 445642624 5.160000e-24 122.0
32 TraesCS7B01G410700 chr1D 100.000 33 0 0 1745 1777 22912892 22912924 1.140000e-05 62.1
33 TraesCS7B01G410700 chrUn 80.711 394 53 14 994 1364 16444224 16443831 6.220000e-73 285.0
34 TraesCS7B01G410700 chrUn 82.237 152 16 4 2397 2548 87844109 87844249 1.860000e-23 121.0
35 TraesCS7B01G410700 chrUn 82.237 152 16 4 2397 2548 213329198 213329338 1.860000e-23 121.0
36 TraesCS7B01G410700 chrUn 82.237 152 16 4 2397 2548 282191682 282191822 1.860000e-23 121.0
37 TraesCS7B01G410700 chrUn 89.362 94 10 0 994 1087 375769770 375769677 6.680000e-23 119.0
38 TraesCS7B01G410700 chr2B 89.372 207 18 4 1438 1640 27356405 27356611 1.360000e-64 257.0
39 TraesCS7B01G410700 chr2B 88.889 207 19 4 1438 1640 27250504 27250710 6.310000e-63 252.0
40 TraesCS7B01G410700 chr2B 88.889 207 19 4 1438 1640 27288098 27288304 6.310000e-63 252.0
41 TraesCS7B01G410700 chr2A 76.126 444 87 13 2384 2815 20552248 20552684 8.280000e-52 215.0
42 TraesCS7B01G410700 chr2A 87.121 132 14 3 1783 1913 437629737 437629866 3.060000e-31 147.0
43 TraesCS7B01G410700 chr2A 87.023 131 14 3 1784 1913 140577977 140578105 1.100000e-30 145.0
44 TraesCS7B01G410700 chr2A 95.349 43 2 0 1735 1777 508348584 508348542 6.820000e-08 69.4
45 TraesCS7B01G410700 chr3A 88.462 130 12 3 1783 1911 622094306 622094433 1.830000e-33 154.0
46 TraesCS7B01G410700 chr3A 100.000 33 0 0 1745 1777 266563679 266563711 1.140000e-05 62.1
47 TraesCS7B01G410700 chr3B 87.692 130 13 3 1783 1911 757423911 757424038 8.520000e-32 148.0
48 TraesCS7B01G410700 chr6B 85.507 138 17 2 1783 1919 474193312 474193177 1.430000e-29 141.0
49 TraesCS7B01G410700 chr6D 95.455 44 2 0 1735 1778 226946672 226946629 1.900000e-08 71.3
50 TraesCS7B01G410700 chr3D 100.000 35 0 0 1743 1777 288688800 288688766 8.830000e-07 65.8
51 TraesCS7B01G410700 chr5D 100.000 33 0 0 1745 1777 354117943 354117975 1.140000e-05 62.1
52 TraesCS7B01G410700 chr4D 100.000 33 0 0 1745 1777 110866751 110866783 1.140000e-05 62.1
53 TraesCS7B01G410700 chr6A 97.143 35 1 0 2412 2446 129934016 129934050 4.110000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G410700 chr7B 679681305 679685111 3806 True 2380.133333 7031 97.980000 1 3807 3 chr7B.!!$R1 3806
1 TraesCS7B01G410700 chr7B 679712646 679713676 1030 True 517.500000 527 86.166500 670 1651 2 chr7B.!!$R2 981
2 TraesCS7B01G410700 chr7A 692053007 692057445 4438 True 930.250000 1522 87.848500 1 3807 4 chr7A.!!$R3 3806
3 TraesCS7B01G410700 chr7A 692155262 692156033 771 True 564.000000 564 80.629000 893 1654 1 chr7A.!!$R2 761
4 TraesCS7B01G410700 chr7A 692130252 692131260 1008 True 455.000000 457 84.219000 670 1640 2 chr7A.!!$R4 970
5 TraesCS7B01G410700 chr1B 608994650 608996442 1792 True 399.500000 580 80.147000 995 2826 2 chr1B.!!$R3 1831
6 TraesCS7B01G410700 chr1A 541894140 541895713 1573 True 287.000000 544 89.450000 995 2533 3 chr1A.!!$R1 1538
7 TraesCS7B01G410700 chr7D 599884114 599885133 1019 True 501.000000 521 86.006500 670 1651 2 chr7D.!!$R1 981
8 TraesCS7B01G410700 chr1D 445641170 445642722 1552 True 269.333333 508 88.286333 995 2533 3 chr1D.!!$R1 1538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
820 857 0.179081 GGATCTTACCCAGCCACGAC 60.179 60.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2807 3289 0.166814 GCTACTGTTGCAAAGCCGAG 59.833 55.0 9.29 1.69 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.703892 AGACTACTATCATGAATATGCAAAGTC 57.296 33.333 0.00 5.55 34.21 3.01
37 38 7.236529 ACTATCATGAATATGCAAAGTCCCAT 58.763 34.615 0.00 0.00 34.21 4.00
56 57 3.251729 CCATGGGTTCTCAATTCGCATAG 59.748 47.826 2.85 0.00 34.34 2.23
58 59 3.797039 TGGGTTCTCAATTCGCATAGAG 58.203 45.455 0.00 0.00 0.00 2.43
66 67 0.671781 ATTCGCATAGAGCATCGCCC 60.672 55.000 0.00 0.00 46.13 6.13
70 71 0.590195 GCATAGAGCATCGCCCAAAG 59.410 55.000 0.00 0.00 44.79 2.77
89 90 1.602771 GTCAAGCCAGGGGAGTACC 59.397 63.158 0.00 0.00 39.11 3.34
91 92 2.122056 AAGCCAGGGGAGTACCGT 59.878 61.111 0.00 0.00 41.60 4.83
118 119 3.981416 GCAAGCTAAAGTGCTACAAAACC 59.019 43.478 0.75 0.00 43.24 3.27
144 146 3.485743 GGAAACAAGAACGATGCAACAAC 59.514 43.478 0.00 0.00 0.00 3.32
146 148 3.773860 ACAAGAACGATGCAACAACAA 57.226 38.095 0.00 0.00 0.00 2.83
200 202 2.861147 GGCAAAAGGACCACTCTAGT 57.139 50.000 0.00 0.00 0.00 2.57
201 203 2.701107 GGCAAAAGGACCACTCTAGTC 58.299 52.381 0.00 0.00 0.00 2.59
202 204 2.303311 GGCAAAAGGACCACTCTAGTCT 59.697 50.000 0.00 0.00 34.56 3.24
203 205 3.591023 GCAAAAGGACCACTCTAGTCTC 58.409 50.000 0.00 0.00 34.56 3.36
204 206 3.259625 GCAAAAGGACCACTCTAGTCTCT 59.740 47.826 0.00 0.00 34.56 3.10
206 208 5.393678 GCAAAAGGACCACTCTAGTCTCTAG 60.394 48.000 0.00 0.00 34.56 2.43
207 209 5.782677 AAAGGACCACTCTAGTCTCTAGA 57.217 43.478 6.37 6.37 34.56 2.43
208 210 5.367945 AAGGACCACTCTAGTCTCTAGAG 57.632 47.826 23.76 23.76 44.87 2.43
209 211 3.714798 AGGACCACTCTAGTCTCTAGAGG 59.285 52.174 26.83 18.24 43.93 3.69
210 212 3.473625 GACCACTCTAGTCTCTAGAGGC 58.526 54.545 26.83 16.88 43.93 4.70
211 213 2.158871 ACCACTCTAGTCTCTAGAGGCG 60.159 54.545 26.83 20.54 43.93 5.52
212 214 2.103432 CCACTCTAGTCTCTAGAGGCGA 59.897 54.545 26.83 12.72 43.93 5.54
213 215 3.128349 CACTCTAGTCTCTAGAGGCGAC 58.872 54.545 26.83 10.28 43.93 5.19
214 216 3.036091 ACTCTAGTCTCTAGAGGCGACT 58.964 50.000 26.83 16.59 43.93 4.18
215 217 3.453353 ACTCTAGTCTCTAGAGGCGACTT 59.547 47.826 26.83 3.92 43.93 3.01
216 218 4.080751 ACTCTAGTCTCTAGAGGCGACTTT 60.081 45.833 26.83 3.54 43.93 2.66
254 256 6.699575 AAGTGAGTGTGTTTTAGCTTGAAT 57.300 33.333 0.00 0.00 0.00 2.57
276 278 3.751479 AAAGCAGCCGAAATTCCTTTT 57.249 38.095 0.00 0.00 0.00 2.27
277 279 3.751479 AAGCAGCCGAAATTCCTTTTT 57.249 38.095 0.00 0.00 0.00 1.94
278 280 3.303881 AGCAGCCGAAATTCCTTTTTC 57.696 42.857 0.00 0.00 33.24 2.29
280 282 2.989166 GCAGCCGAAATTCCTTTTTCAG 59.011 45.455 0.00 0.00 35.73 3.02
282 284 4.795962 GCAGCCGAAATTCCTTTTTCAGAA 60.796 41.667 0.00 0.00 35.73 3.02
283 285 5.288804 CAGCCGAAATTCCTTTTTCAGAAA 58.711 37.500 0.00 0.00 35.73 2.52
284 286 5.752955 CAGCCGAAATTCCTTTTTCAGAAAA 59.247 36.000 4.06 4.06 35.73 2.29
285 287 6.424812 CAGCCGAAATTCCTTTTTCAGAAAAT 59.575 34.615 9.19 0.00 35.73 1.82
286 288 7.598493 CAGCCGAAATTCCTTTTTCAGAAAATA 59.402 33.333 9.19 0.72 35.73 1.40
288 290 8.769891 GCCGAAATTCCTTTTTCAGAAAATAAA 58.230 29.630 9.19 5.05 35.73 1.40
295 297 9.705290 TTCCTTTTTCAGAAAATAAATACAGCC 57.295 29.630 9.19 0.00 34.45 4.85
302 304 9.651913 TTCAGAAAATAAATACAGCCAAATTCC 57.348 29.630 0.00 0.00 0.00 3.01
318 320 6.408869 CCAAATTCCTGTAAATGGAAGCAAT 58.591 36.000 0.00 0.00 45.43 3.56
346 348 6.993786 TTGATGATTCGCTTGTTATACCAA 57.006 33.333 0.00 0.00 0.00 3.67
357 359 2.732500 TGTTATACCAACAAGTGCGTCG 59.267 45.455 0.00 0.00 0.00 5.12
373 377 1.465354 CGTCGGTCACACTGCTAGTAC 60.465 57.143 0.00 0.00 0.00 2.73
374 378 1.538512 GTCGGTCACACTGCTAGTACA 59.461 52.381 0.00 0.00 0.00 2.90
375 379 2.163815 GTCGGTCACACTGCTAGTACAT 59.836 50.000 0.00 0.00 0.00 2.29
376 380 2.422479 TCGGTCACACTGCTAGTACATC 59.578 50.000 0.00 0.00 0.00 3.06
377 381 2.479730 CGGTCACACTGCTAGTACATCC 60.480 54.545 0.00 0.00 0.00 3.51
378 382 2.761208 GGTCACACTGCTAGTACATCCT 59.239 50.000 0.00 0.00 0.00 3.24
379 383 3.181485 GGTCACACTGCTAGTACATCCTC 60.181 52.174 0.00 0.00 0.00 3.71
380 384 3.697045 GTCACACTGCTAGTACATCCTCT 59.303 47.826 0.00 0.00 0.00 3.69
381 385 4.158764 GTCACACTGCTAGTACATCCTCTT 59.841 45.833 0.00 0.00 0.00 2.85
382 386 4.772624 TCACACTGCTAGTACATCCTCTTT 59.227 41.667 0.00 0.00 0.00 2.52
383 387 5.246203 TCACACTGCTAGTACATCCTCTTTT 59.754 40.000 0.00 0.00 0.00 2.27
384 388 5.934625 CACACTGCTAGTACATCCTCTTTTT 59.065 40.000 0.00 0.00 0.00 1.94
439 443 9.651913 AAAATGTCATTGAAAGTACAAAACACT 57.348 25.926 0.00 0.00 34.70 3.55
444 448 7.432252 GTCATTGAAAGTACAAAACACTCCAAG 59.568 37.037 0.00 0.00 33.44 3.61
456 460 9.777297 ACAAAACACTCCAAGCATAATAAAATT 57.223 25.926 0.00 0.00 0.00 1.82
483 510 3.981071 ATCGAGATTCTTGGACAACCA 57.019 42.857 1.00 0.00 45.34 3.67
493 520 0.665835 TGGACAACCAAACGACATGC 59.334 50.000 0.00 0.00 43.91 4.06
494 521 0.951558 GGACAACCAAACGACATGCT 59.048 50.000 0.00 0.00 35.97 3.79
495 522 1.069227 GGACAACCAAACGACATGCTC 60.069 52.381 0.00 0.00 35.97 4.26
506 538 1.595489 CGACATGCTCGCTTATTTGCC 60.595 52.381 0.00 0.00 35.06 4.52
512 544 1.135286 GCTCGCTTATTTGCCTTTGCT 60.135 47.619 0.00 0.00 38.71 3.91
517 549 4.447389 TCGCTTATTTGCCTTTGCTTTTTC 59.553 37.500 0.00 0.00 38.71 2.29
519 551 5.633182 CGCTTATTTGCCTTTGCTTTTTCTA 59.367 36.000 0.00 0.00 38.71 2.10
522 554 7.171508 GCTTATTTGCCTTTGCTTTTTCTACTT 59.828 33.333 0.00 0.00 38.71 2.24
531 563 7.433425 CCTTTGCTTTTTCTACTTCTGTCTTTG 59.567 37.037 0.00 0.00 0.00 2.77
542 574 4.394300 ACTTCTGTCTTTGCACATCTATGC 59.606 41.667 0.00 0.00 46.32 3.14
546 578 3.191162 TGTCTTTGCACATCTATGCCAAC 59.809 43.478 0.00 0.00 45.50 3.77
554 586 4.180817 CACATCTATGCCAACTCGTACAA 58.819 43.478 0.00 0.00 0.00 2.41
555 587 4.032900 CACATCTATGCCAACTCGTACAAC 59.967 45.833 0.00 0.00 0.00 3.32
556 588 3.945981 TCTATGCCAACTCGTACAACA 57.054 42.857 0.00 0.00 0.00 3.33
557 589 4.465632 TCTATGCCAACTCGTACAACAT 57.534 40.909 0.00 0.00 0.00 2.71
558 590 5.585820 TCTATGCCAACTCGTACAACATA 57.414 39.130 0.00 0.00 0.00 2.29
559 591 6.156748 TCTATGCCAACTCGTACAACATAT 57.843 37.500 0.00 0.00 0.00 1.78
560 592 7.279750 TCTATGCCAACTCGTACAACATATA 57.720 36.000 0.00 0.00 0.00 0.86
561 593 7.892609 TCTATGCCAACTCGTACAACATATAT 58.107 34.615 0.00 0.00 0.00 0.86
562 594 9.016438 TCTATGCCAACTCGTACAACATATATA 57.984 33.333 0.00 0.00 0.00 0.86
563 595 9.290483 CTATGCCAACTCGTACAACATATATAG 57.710 37.037 0.00 0.00 0.00 1.31
564 596 7.046292 TGCCAACTCGTACAACATATATAGT 57.954 36.000 0.00 0.00 0.00 2.12
565 597 8.168790 TGCCAACTCGTACAACATATATAGTA 57.831 34.615 0.00 0.00 0.00 1.82
566 598 8.294577 TGCCAACTCGTACAACATATATAGTAG 58.705 37.037 0.00 0.00 0.00 2.57
567 599 8.295288 GCCAACTCGTACAACATATATAGTAGT 58.705 37.037 0.00 0.00 0.00 2.73
573 605 7.182761 CGTACAACATATATAGTAGTACGCCC 58.817 42.308 18.42 0.00 44.06 6.13
574 606 7.065085 CGTACAACATATATAGTAGTACGCCCT 59.935 40.741 18.42 0.00 44.06 5.19
575 607 9.383519 GTACAACATATATAGTAGTACGCCCTA 57.616 37.037 0.00 0.00 0.00 3.53
587 619 0.255890 ACGCCCTATCCTTGTGCATT 59.744 50.000 0.00 0.00 0.00 3.56
588 620 1.340991 ACGCCCTATCCTTGTGCATTT 60.341 47.619 0.00 0.00 0.00 2.32
589 621 1.066002 CGCCCTATCCTTGTGCATTTG 59.934 52.381 0.00 0.00 0.00 2.32
590 622 2.102578 GCCCTATCCTTGTGCATTTGT 58.897 47.619 0.00 0.00 0.00 2.83
591 623 2.497273 GCCCTATCCTTGTGCATTTGTT 59.503 45.455 0.00 0.00 0.00 2.83
595 627 5.409214 CCCTATCCTTGTGCATTTGTTTTTG 59.591 40.000 0.00 0.00 0.00 2.44
606 638 1.045911 TTGTTTTTGGAGCGGGCCTT 61.046 50.000 0.84 0.00 0.00 4.35
607 639 1.006220 GTTTTTGGAGCGGGCCTTG 60.006 57.895 0.84 0.00 0.00 3.61
626 658 5.353678 GCCTTGTGCATTCATCTATCCTATC 59.646 44.000 0.00 0.00 40.77 2.08
635 667 9.809096 GCATTCATCTATCCTATCTTTATTCGA 57.191 33.333 0.00 0.00 0.00 3.71
648 680 5.572211 TCTTTATTCGATGTCTTGCAATGC 58.428 37.500 0.00 0.00 0.00 3.56
651 683 0.804364 TCGATGTCTTGCAATGCCAC 59.196 50.000 1.53 0.00 0.00 5.01
668 700 2.816689 CCACGTTATTGCTACGGATGA 58.183 47.619 0.00 0.00 42.99 2.92
683 717 2.238847 GATGAGGGCACGGCACACTA 62.239 60.000 0.98 0.00 32.33 2.74
702 736 1.377536 AGCGTACGAGAGGAGGTTAC 58.622 55.000 21.65 0.00 30.94 2.50
820 857 0.179081 GGATCTTACCCAGCCACGAC 60.179 60.000 0.00 0.00 0.00 4.34
824 861 1.874345 CTTACCCAGCCACGACGACT 61.874 60.000 0.00 0.00 0.00 4.18
973 1015 2.238395 ACATCCTTCCTCTTCCTCAAGC 59.762 50.000 0.00 0.00 0.00 4.01
1014 1059 1.376609 GCAAAATGGTCTCCGCCGAT 61.377 55.000 0.00 0.00 0.00 4.18
1208 1323 2.747686 GCCAAGGACGTGGAGGAA 59.252 61.111 8.49 0.00 41.65 3.36
1268 1383 0.039180 TGCTCTGGGTCTTCTACGGA 59.961 55.000 0.00 0.00 0.00 4.69
1310 1425 0.384309 GCATCCTCGTCGTCACCATA 59.616 55.000 0.00 0.00 0.00 2.74
1380 1495 4.346709 TCATCTACTCCACCAACAACAAGA 59.653 41.667 0.00 0.00 0.00 3.02
1388 1503 2.616842 CACCAACAACAAGAGGGTACAC 59.383 50.000 0.00 0.00 0.00 2.90
1389 1504 2.240160 ACCAACAACAAGAGGGTACACA 59.760 45.455 0.00 0.00 0.00 3.72
1393 1508 5.123820 CCAACAACAAGAGGGTACACATATG 59.876 44.000 0.00 0.00 0.00 1.78
1395 1510 6.313519 ACAACAAGAGGGTACACATATGAT 57.686 37.500 10.38 0.00 0.00 2.45
1396 1511 7.432148 ACAACAAGAGGGTACACATATGATA 57.568 36.000 10.38 0.00 0.00 2.15
1419 1534 4.902448 AGTACATCCCTTAGTCATTCCTCC 59.098 45.833 0.00 0.00 0.00 4.30
1422 1537 5.538877 ACATCCCTTAGTCATTCCTCCTTA 58.461 41.667 0.00 0.00 0.00 2.69
1457 1618 1.231068 CCTAACCCATGCATGCCCT 59.769 57.895 21.69 9.28 0.00 5.19
1587 1748 1.037579 TGATCGTCGGCATCCTCTGT 61.038 55.000 0.00 0.00 0.00 3.41
1677 2015 7.941919 ACTCTTTTTATTTCTTGTGGAGGTTC 58.058 34.615 0.00 0.00 0.00 3.62
1680 2018 5.705609 TTTATTTCTTGTGGAGGTTCTGC 57.294 39.130 0.00 0.00 0.00 4.26
1711 2049 9.677567 TTGTAGAGTTTTATTTTGCACTCAATC 57.322 29.630 0.00 0.00 38.53 2.67
1738 2076 3.776656 GTGTTAGGCCACGCGTAG 58.223 61.111 13.44 5.62 30.67 3.51
1751 2089 3.610786 ACGCGTAGTGAGAGTATCATG 57.389 47.619 11.67 0.00 43.07 3.07
1752 2090 2.290916 ACGCGTAGTGAGAGTATCATGG 59.709 50.000 11.67 0.00 43.07 3.66
1768 2106 3.340928 TCATGGCTAGTATCATGCATGC 58.659 45.455 22.25 11.82 40.20 4.06
1773 2111 3.144506 GCTAGTATCATGCATGCCAACT 58.855 45.455 22.25 22.78 0.00 3.16
1876 2258 8.972127 ACGATATGATACTATGCATTAGAAGGT 58.028 33.333 3.54 0.00 0.00 3.50
1919 2303 7.752695 TCATATGCATGATACTACTCACTACG 58.247 38.462 10.16 0.00 36.22 3.51
1920 2304 4.830826 TGCATGATACTACTCACTACGG 57.169 45.455 0.00 0.00 0.00 4.02
1921 2305 3.568430 TGCATGATACTACTCACTACGGG 59.432 47.826 0.00 0.00 0.00 5.28
1922 2306 3.612004 GCATGATACTACTCACTACGGGC 60.612 52.174 0.00 0.00 0.00 6.13
1933 2330 3.093814 TCACTACGGGCAGACTTAATGA 58.906 45.455 0.00 0.00 0.00 2.57
1934 2331 3.704566 TCACTACGGGCAGACTTAATGAT 59.295 43.478 0.00 0.00 0.00 2.45
1968 2365 2.233271 ACCAACATTGTCCTCTGCTTG 58.767 47.619 0.00 0.00 0.00 4.01
1971 2373 1.901591 ACATTGTCCTCTGCTTGTGG 58.098 50.000 0.00 0.00 0.00 4.17
2030 2439 1.454847 TTGCACCCGCCAAACTCTT 60.455 52.632 0.00 0.00 37.32 2.85
2037 2446 1.535462 CCCGCCAAACTCTTGTGTTAG 59.465 52.381 0.00 0.00 0.00 2.34
2038 2447 1.069227 CCGCCAAACTCTTGTGTTAGC 60.069 52.381 0.00 0.00 0.00 3.09
2039 2448 1.873591 CGCCAAACTCTTGTGTTAGCT 59.126 47.619 0.00 0.00 31.36 3.32
2040 2449 3.064207 CGCCAAACTCTTGTGTTAGCTA 58.936 45.455 0.00 0.00 31.36 3.32
2176 2608 5.049167 TGCTGTTGTAATCTTTGCCTTTTG 58.951 37.500 0.00 0.00 0.00 2.44
2177 2609 5.163468 TGCTGTTGTAATCTTTGCCTTTTGA 60.163 36.000 0.00 0.00 0.00 2.69
2187 2619 5.327732 TCTTTGCCTTTTGATGATCCTTCT 58.672 37.500 0.00 0.00 0.00 2.85
2226 2664 5.541845 TGAGGTGATATGATGTCGAAATCC 58.458 41.667 13.10 0.00 0.00 3.01
2252 2693 1.815421 GATACTGCACCGGCCACTG 60.815 63.158 0.00 0.00 40.13 3.66
2264 2705 1.745489 GCCACTGACATCGGGGTTC 60.745 63.158 0.00 0.00 0.00 3.62
2293 2734 0.807667 CGTGGGTCATGCAGTCTAGC 60.808 60.000 0.00 0.00 0.00 3.42
2295 2736 1.065854 GTGGGTCATGCAGTCTAGCTT 60.066 52.381 0.00 0.00 34.99 3.74
2296 2737 1.065926 TGGGTCATGCAGTCTAGCTTG 60.066 52.381 0.00 0.00 40.03 4.01
2297 2738 1.661341 GGTCATGCAGTCTAGCTTGG 58.339 55.000 0.00 0.00 39.39 3.61
2298 2739 1.065854 GGTCATGCAGTCTAGCTTGGT 60.066 52.381 0.00 0.00 39.39 3.67
2300 2741 1.625315 TCATGCAGTCTAGCTTGGTGT 59.375 47.619 0.00 0.00 39.39 4.16
2302 2743 0.038251 TGCAGTCTAGCTTGGTGTCG 60.038 55.000 0.00 0.00 34.99 4.35
2303 2744 0.038159 GCAGTCTAGCTTGGTGTCGT 60.038 55.000 0.00 0.00 0.00 4.34
2324 2799 8.517056 TGTCGTAACTTGTTTACTCATCATCTA 58.483 33.333 0.00 0.00 38.40 1.98
2325 2800 9.011407 GTCGTAACTTGTTTACTCATCATCTAG 57.989 37.037 0.00 0.00 38.40 2.43
2326 2801 8.188799 TCGTAACTTGTTTACTCATCATCTAGG 58.811 37.037 0.00 0.00 38.40 3.02
2331 2809 7.984050 ACTTGTTTACTCATCATCTAGGTCATG 59.016 37.037 0.00 0.00 0.00 3.07
2346 2824 9.988815 ATCTAGGTCATGTACATTTAATGACTC 57.011 33.333 20.34 13.24 46.11 3.36
2347 2825 8.977412 TCTAGGTCATGTACATTTAATGACTCA 58.023 33.333 20.34 11.12 46.11 3.41
2416 2895 3.609853 CTGCTTGCAGGGTAAAGTGATA 58.390 45.455 14.25 0.00 0.00 2.15
2452 2931 4.037222 TGGAGTACATGCCATTCTTCCTA 58.963 43.478 0.00 0.00 0.00 2.94
2509 2988 1.672881 GCCTATGCGCTCATCAAGTTT 59.327 47.619 9.73 0.00 34.22 2.66
2521 3000 5.005203 GCTCATCAAGTTTGATCTCTACGTG 59.995 44.000 0.00 0.00 45.62 4.49
2534 3013 1.800586 TCTACGTGACGGTCAGTACAC 59.199 52.381 11.83 0.00 0.00 2.90
2547 3026 5.066117 CGGTCAGTACACTACATACACATCT 59.934 44.000 0.00 0.00 0.00 2.90
2550 3029 7.201830 GGTCAGTACACTACATACACATCTCAT 60.202 40.741 0.00 0.00 0.00 2.90
2551 3030 7.858382 GTCAGTACACTACATACACATCTCATC 59.142 40.741 0.00 0.00 0.00 2.92
2555 3034 7.410120 ACACTACATACACATCTCATCAAGA 57.590 36.000 0.00 0.00 38.72 3.02
2556 3035 7.840931 ACACTACATACACATCTCATCAAGAA 58.159 34.615 0.00 0.00 37.61 2.52
2557 3036 7.978414 ACACTACATACACATCTCATCAAGAAG 59.022 37.037 0.00 0.00 37.61 2.85
2558 3037 7.978414 CACTACATACACATCTCATCAAGAAGT 59.022 37.037 0.00 0.00 36.38 3.01
2559 3038 8.535335 ACTACATACACATCTCATCAAGAAGTT 58.465 33.333 0.00 0.00 33.75 2.66
2561 3040 6.093219 ACATACACATCTCATCAAGAAGTTGC 59.907 38.462 0.00 0.00 33.75 4.17
2562 3041 4.392047 ACACATCTCATCAAGAAGTTGCA 58.608 39.130 0.00 0.00 33.75 4.08
2563 3042 4.823442 ACACATCTCATCAAGAAGTTGCAA 59.177 37.500 0.00 0.00 33.75 4.08
2564 3043 5.152097 CACATCTCATCAAGAAGTTGCAAC 58.848 41.667 22.17 22.17 33.75 4.17
2565 3044 5.048921 CACATCTCATCAAGAAGTTGCAACT 60.049 40.000 26.36 26.36 42.04 3.16
2566 3045 5.180868 ACATCTCATCAAGAAGTTGCAACTC 59.819 40.000 31.20 22.74 38.57 3.01
2567 3046 4.707105 TCTCATCAAGAAGTTGCAACTCA 58.293 39.130 31.20 13.84 38.57 3.41
2568 3047 5.125356 TCTCATCAAGAAGTTGCAACTCAA 58.875 37.500 31.20 15.45 38.57 3.02
2589 3068 4.357918 ACCAAACTTACACTCTGCATCT 57.642 40.909 0.00 0.00 0.00 2.90
2590 3069 4.718961 ACCAAACTTACACTCTGCATCTT 58.281 39.130 0.00 0.00 0.00 2.40
2592 3071 5.594317 ACCAAACTTACACTCTGCATCTTTT 59.406 36.000 0.00 0.00 0.00 2.27
2716 3195 1.794437 GCCTGCTACTACAAGTCGACG 60.794 57.143 10.46 0.00 0.00 5.12
2733 3212 0.528470 ACGCCGAAGAAGGAGAAGAG 59.472 55.000 0.00 0.00 35.00 2.85
2766 3245 0.450184 ACTGCCGTCAACAACAACAC 59.550 50.000 0.00 0.00 0.00 3.32
2768 3247 0.449786 TGCCGTCAACAACAACACTG 59.550 50.000 0.00 0.00 0.00 3.66
2774 3256 2.049185 AACAACAACACTGGCGGCA 61.049 52.632 12.58 12.58 0.00 5.69
2807 3289 2.609459 TCCGTTACCGTCGAGAGATAAC 59.391 50.000 0.00 0.00 45.19 1.89
2808 3290 2.611292 CCGTTACCGTCGAGAGATAACT 59.389 50.000 0.00 0.00 45.19 2.24
2819 3303 3.262420 GAGAGATAACTCGGCTTTGCAA 58.738 45.455 0.00 0.00 46.64 4.08
2833 3317 0.467106 TTGCAACAGTAGCAAGCCCA 60.467 50.000 0.00 0.00 46.13 5.36
2835 3319 1.172180 GCAACAGTAGCAAGCCCACA 61.172 55.000 0.00 0.00 0.00 4.17
2837 3321 0.890996 AACAGTAGCAAGCCCACAGC 60.891 55.000 0.00 0.00 44.25 4.40
2839 3323 2.034066 GTAGCAAGCCCACAGCCA 59.966 61.111 0.00 0.00 45.47 4.75
2840 3324 2.042831 GTAGCAAGCCCACAGCCAG 61.043 63.158 0.00 0.00 45.47 4.85
2862 3346 0.032217 ATCAAATCCGGCCCACCAAT 60.032 50.000 0.00 0.00 34.57 3.16
2879 3363 1.338020 CAATGGCCGAGATTTTAGCCC 59.662 52.381 0.00 0.00 45.14 5.19
2882 3366 1.025041 GGCCGAGATTTTAGCCCAAG 58.975 55.000 0.00 0.00 39.60 3.61
2887 3371 3.947834 CCGAGATTTTAGCCCAAGACATT 59.052 43.478 0.00 0.00 0.00 2.71
2893 3377 7.154656 AGATTTTAGCCCAAGACATTTTGAAC 58.845 34.615 0.00 0.00 0.00 3.18
2899 3383 5.362430 AGCCCAAGACATTTTGAACAGTTAA 59.638 36.000 0.00 0.00 0.00 2.01
2902 3386 6.918022 CCCAAGACATTTTGAACAGTTAAGAC 59.082 38.462 0.00 0.00 0.00 3.01
2907 3391 6.725246 ACATTTTGAACAGTTAAGACTTCCG 58.275 36.000 0.00 0.00 32.54 4.30
2909 3393 4.675976 TTGAACAGTTAAGACTTCCGGA 57.324 40.909 0.00 0.00 32.54 5.14
2913 3397 5.046591 TGAACAGTTAAGACTTCCGGATGAT 60.047 40.000 23.15 11.26 32.54 2.45
2920 3404 2.237143 AGACTTCCGGATGATGCTTCAA 59.763 45.455 23.15 0.00 34.96 2.69
2953 3437 7.787725 GTGCTAGCTAGTACCATTTGTTAAT 57.212 36.000 26.38 0.00 33.54 1.40
2954 3438 7.630924 GTGCTAGCTAGTACCATTTGTTAATG 58.369 38.462 26.38 0.00 40.70 1.90
2955 3439 7.280205 GTGCTAGCTAGTACCATTTGTTAATGT 59.720 37.037 26.38 0.00 39.62 2.71
2956 3440 7.827236 TGCTAGCTAGTACCATTTGTTAATGTT 59.173 33.333 21.62 0.00 39.62 2.71
2957 3441 9.321562 GCTAGCTAGTACCATTTGTTAATGTTA 57.678 33.333 21.62 0.00 39.62 2.41
2959 3443 8.732746 AGCTAGTACCATTTGTTAATGTTAGG 57.267 34.615 0.00 0.00 39.62 2.69
2960 3444 8.326529 AGCTAGTACCATTTGTTAATGTTAGGT 58.673 33.333 0.00 0.00 39.62 3.08
3007 3491 1.455786 CGTGAACCATTGTCGTCTGTC 59.544 52.381 0.00 0.00 0.00 3.51
3071 3555 3.963374 TCCCAGATAGTGAATGAGACCAG 59.037 47.826 0.00 0.00 0.00 4.00
3096 3580 2.495270 TGTCACCTGCTCTCTCAATCTC 59.505 50.000 0.00 0.00 0.00 2.75
3097 3581 2.760092 GTCACCTGCTCTCTCAATCTCT 59.240 50.000 0.00 0.00 0.00 3.10
3164 3648 2.466523 CTTCCTGGCTGACTGCTGCT 62.467 60.000 0.00 0.00 42.39 4.24
3223 3707 0.884704 ACGCTTGTACTGGCAACCTG 60.885 55.000 10.26 0.00 0.00 4.00
3227 3711 1.531149 CTTGTACTGGCAACCTGTTCG 59.469 52.381 1.29 0.00 36.99 3.95
3232 3716 0.865769 CTGGCAACCTGTTCGTGTAC 59.134 55.000 0.00 0.00 0.00 2.90
3233 3717 0.876777 TGGCAACCTGTTCGTGTACG 60.877 55.000 0.00 0.00 41.45 3.67
3234 3718 0.877213 GGCAACCTGTTCGTGTACGT 60.877 55.000 4.20 0.00 40.80 3.57
3235 3719 0.932399 GCAACCTGTTCGTGTACGTT 59.068 50.000 0.00 0.00 40.80 3.99
3236 3720 1.328374 GCAACCTGTTCGTGTACGTTT 59.672 47.619 0.00 0.00 40.80 3.60
3237 3721 2.598205 GCAACCTGTTCGTGTACGTTTC 60.598 50.000 0.00 0.00 40.80 2.78
3238 3722 1.480205 ACCTGTTCGTGTACGTTTCG 58.520 50.000 0.00 0.00 40.80 3.46
3290 3774 9.072294 CAAATTTGGGCGTTAGAAGTAATAAAG 57.928 33.333 10.49 0.00 0.00 1.85
3292 3776 6.973229 TTGGGCGTTAGAAGTAATAAAGAC 57.027 37.500 0.00 0.00 0.00 3.01
3296 3780 5.870978 GGCGTTAGAAGTAATAAAGACACCA 59.129 40.000 0.00 0.00 0.00 4.17
3319 3803 8.222637 ACCACTAACTTAAACTTGGACCTTATT 58.777 33.333 0.00 0.00 0.00 1.40
3397 3883 1.977293 CTAGGGAGGCAAGAGGGTGC 61.977 65.000 0.00 0.00 44.14 5.01
3401 3887 3.255397 AGGCAAGAGGGTGCTGCT 61.255 61.111 0.00 0.00 44.31 4.24
3454 3940 5.012328 TGTTACCCGCAAAAGAAAAACAT 57.988 34.783 0.00 0.00 0.00 2.71
3465 3951 8.368126 CGCAAAAGAAAAACATATGTCATCTTC 58.632 33.333 21.40 15.65 0.00 2.87
3466 3952 8.650714 GCAAAAGAAAAACATATGTCATCTTCC 58.349 33.333 21.40 13.77 0.00 3.46
3502 3988 3.123273 AGGGTGGTAAGTGGCATAATCT 58.877 45.455 0.00 0.00 0.00 2.40
3547 4034 6.143438 GTGTGAAGATTGATTTTGCAGTTGAG 59.857 38.462 0.00 0.00 0.00 3.02
3549 4036 4.859304 AGATTGATTTTGCAGTTGAGCA 57.141 36.364 0.00 0.00 43.99 4.26
3561 4048 5.643664 TGCAGTTGAGCATGAATATCAAAC 58.356 37.500 0.00 0.00 40.11 2.93
3566 4053 8.886719 CAGTTGAGCATGAATATCAAACTAAGA 58.113 33.333 0.00 0.00 0.00 2.10
3575 4062 1.873698 TCAAACTAAGACCGGTGCAC 58.126 50.000 14.63 8.80 0.00 4.57
3601 4088 2.795329 ACCCATGTTTCTACTTGGCTG 58.205 47.619 0.00 0.00 44.34 4.85
3625 4112 6.514947 GCCCATTGCATGAATATCAAACTAA 58.485 36.000 0.00 0.00 40.77 2.24
3626 4113 6.643770 GCCCATTGCATGAATATCAAACTAAG 59.356 38.462 0.00 0.00 40.77 2.18
3627 4114 7.470424 GCCCATTGCATGAATATCAAACTAAGA 60.470 37.037 0.00 0.00 40.77 2.10
3628 4115 7.864379 CCCATTGCATGAATATCAAACTAAGAC 59.136 37.037 0.00 0.00 0.00 3.01
3629 4116 7.864379 CCATTGCATGAATATCAAACTAAGACC 59.136 37.037 0.00 0.00 0.00 3.85
3630 4117 6.603237 TGCATGAATATCAAACTAAGACCG 57.397 37.500 0.00 0.00 0.00 4.79
3631 4118 5.527214 TGCATGAATATCAAACTAAGACCGG 59.473 40.000 0.00 0.00 0.00 5.28
3633 4120 6.511767 GCATGAATATCAAACTAAGACCGGTG 60.512 42.308 14.63 0.00 0.00 4.94
3634 4121 4.873827 TGAATATCAAACTAAGACCGGTGC 59.126 41.667 14.63 3.40 0.00 5.01
3682 4785 0.248215 GCACCGCATAGCAACATCAC 60.248 55.000 0.00 0.00 0.00 3.06
3764 4867 6.699575 AGTTGCTTATTTAATAGTGCCTGG 57.300 37.500 8.64 0.00 0.00 4.45
3782 4885 6.151144 GTGCCTGGTTGAGACTTTTAATATGT 59.849 38.462 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.930760 GGACTTTGCATATTCATGATAGTAGTC 58.069 37.037 0.00 2.59 33.67 2.59
19 20 3.298619 CCCATGGGACTTTGCATATTCA 58.701 45.455 28.27 0.00 37.50 2.57
33 34 0.740737 GCGAATTGAGAACCCATGGG 59.259 55.000 30.23 30.23 42.03 4.00
37 38 3.797039 CTCTATGCGAATTGAGAACCCA 58.203 45.455 9.03 0.00 0.00 4.51
56 57 0.960364 TTGACCTTTGGGCGATGCTC 60.960 55.000 0.00 0.00 35.63 4.26
58 59 1.508088 CTTGACCTTTGGGCGATGC 59.492 57.895 0.00 0.00 35.63 3.91
66 67 0.610232 CTCCCCTGGCTTGACCTTTG 60.610 60.000 0.00 0.00 40.22 2.77
70 71 1.602771 GTACTCCCCTGGCTTGACC 59.397 63.158 0.00 0.00 39.84 4.02
89 90 1.369625 CACTTTAGCTTGCCCCTACG 58.630 55.000 0.00 0.00 0.00 3.51
91 92 0.991920 AGCACTTTAGCTTGCCCCTA 59.008 50.000 4.49 0.00 43.70 3.53
98 99 3.252458 CCGGTTTTGTAGCACTTTAGCTT 59.748 43.478 0.00 0.00 43.70 3.74
118 119 0.802494 CATCGTTCTTGTTTCCCCCG 59.198 55.000 0.00 0.00 0.00 5.73
176 178 0.111253 AGTGGTCCTTTTGCCCTCTG 59.889 55.000 0.00 0.00 0.00 3.35
177 179 0.402121 GAGTGGTCCTTTTGCCCTCT 59.598 55.000 0.00 0.00 0.00 3.69
181 183 2.303311 AGACTAGAGTGGTCCTTTTGCC 59.697 50.000 0.00 0.00 34.56 4.52
193 195 3.036091 AGTCGCCTCTAGAGACTAGAGT 58.964 50.000 21.76 13.16 42.71 3.24
196 198 6.870971 AATAAAGTCGCCTCTAGAGACTAG 57.129 41.667 21.76 5.36 43.60 2.57
197 199 8.784994 CAATAATAAAGTCGCCTCTAGAGACTA 58.215 37.037 21.76 0.00 43.60 2.59
200 202 7.502895 ACTCAATAATAAAGTCGCCTCTAGAGA 59.497 37.037 21.76 0.00 0.00 3.10
201 203 7.653647 ACTCAATAATAAAGTCGCCTCTAGAG 58.346 38.462 13.18 13.18 0.00 2.43
202 204 7.584122 ACTCAATAATAAAGTCGCCTCTAGA 57.416 36.000 0.00 0.00 0.00 2.43
203 205 9.182933 GTTACTCAATAATAAAGTCGCCTCTAG 57.817 37.037 0.00 0.00 0.00 2.43
204 206 8.689061 TGTTACTCAATAATAAAGTCGCCTCTA 58.311 33.333 0.00 0.00 0.00 2.43
206 208 7.766219 TGTTACTCAATAATAAAGTCGCCTC 57.234 36.000 0.00 0.00 0.00 4.70
207 209 8.556213 TTTGTTACTCAATAATAAAGTCGCCT 57.444 30.769 0.00 0.00 35.84 5.52
208 210 8.822105 CTTTGTTACTCAATAATAAAGTCGCC 57.178 34.615 7.40 0.00 42.60 5.54
216 218 9.772973 ACACACTCACTTTGTTACTCAATAATA 57.227 29.630 0.00 0.00 35.84 0.98
254 256 4.864704 AAAGGAATTTCGGCTGCTTTTA 57.135 36.364 0.00 0.00 29.98 1.52
261 263 5.529581 TTTCTGAAAAAGGAATTTCGGCT 57.470 34.783 0.00 0.00 42.72 5.52
262 264 6.785488 ATTTTCTGAAAAAGGAATTTCGGC 57.215 33.333 18.43 0.00 42.72 5.54
269 271 9.705290 GGCTGTATTTATTTTCTGAAAAAGGAA 57.295 29.630 18.43 13.30 37.76 3.36
276 278 9.651913 GGAATTTGGCTGTATTTATTTTCTGAA 57.348 29.630 0.00 0.00 0.00 3.02
277 279 9.034800 AGGAATTTGGCTGTATTTATTTTCTGA 57.965 29.630 0.00 0.00 0.00 3.27
278 280 9.090692 CAGGAATTTGGCTGTATTTATTTTCTG 57.909 33.333 0.00 0.00 0.00 3.02
285 287 8.474025 CCATTTACAGGAATTTGGCTGTATTTA 58.526 33.333 0.00 0.00 33.14 1.40
286 288 7.180051 TCCATTTACAGGAATTTGGCTGTATTT 59.820 33.333 0.00 0.00 33.14 1.40
288 290 6.194235 TCCATTTACAGGAATTTGGCTGTAT 58.806 36.000 0.00 0.00 33.14 2.29
289 291 5.575157 TCCATTTACAGGAATTTGGCTGTA 58.425 37.500 0.00 0.00 30.71 2.74
290 292 4.415596 TCCATTTACAGGAATTTGGCTGT 58.584 39.130 0.00 0.00 30.71 4.40
291 293 5.404466 TTCCATTTACAGGAATTTGGCTG 57.596 39.130 0.00 0.00 40.11 4.85
292 294 4.081476 GCTTCCATTTACAGGAATTTGGCT 60.081 41.667 0.00 0.00 43.74 4.75
293 295 4.183865 GCTTCCATTTACAGGAATTTGGC 58.816 43.478 0.00 0.00 43.74 4.52
294 296 5.404466 TGCTTCCATTTACAGGAATTTGG 57.596 39.130 0.00 0.00 43.74 3.28
295 297 7.910441 AATTGCTTCCATTTACAGGAATTTG 57.090 32.000 0.00 0.00 43.74 2.32
325 327 6.358118 TGTTGGTATAACAAGCGAATCATC 57.642 37.500 2.67 0.00 0.00 2.92
338 340 2.339418 CCGACGCACTTGTTGGTATAA 58.661 47.619 0.00 0.00 38.42 0.98
341 343 4.347096 CCGACGCACTTGTTGGTA 57.653 55.556 0.00 0.00 38.42 3.25
344 346 1.275657 GTGACCGACGCACTTGTTG 59.724 57.895 0.00 0.00 33.57 3.33
346 348 2.497293 TGTGACCGACGCACTTGT 59.503 55.556 7.06 0.00 37.18 3.16
354 356 1.538512 TGTACTAGCAGTGTGACCGAC 59.461 52.381 0.00 0.00 0.00 4.79
357 359 2.761208 AGGATGTACTAGCAGTGTGACC 59.239 50.000 0.00 0.00 0.00 4.02
417 421 6.375736 TGGAGTGTTTTGTACTTTCAATGACA 59.624 34.615 0.00 0.00 0.00 3.58
418 422 6.791303 TGGAGTGTTTTGTACTTTCAATGAC 58.209 36.000 0.00 0.00 0.00 3.06
420 424 6.198966 GCTTGGAGTGTTTTGTACTTTCAATG 59.801 38.462 0.00 0.00 0.00 2.82
422 426 5.184096 TGCTTGGAGTGTTTTGTACTTTCAA 59.816 36.000 0.00 0.00 0.00 2.69
455 459 6.639563 TGTCCAAGAATCTCGATTGTGATAA 58.360 36.000 0.00 0.00 0.00 1.75
456 460 6.220726 TGTCCAAGAATCTCGATTGTGATA 57.779 37.500 0.00 0.00 0.00 2.15
459 463 4.142816 GGTTGTCCAAGAATCTCGATTGTG 60.143 45.833 0.00 0.00 0.00 3.33
460 464 4.003648 GGTTGTCCAAGAATCTCGATTGT 58.996 43.478 0.00 0.00 0.00 2.71
461 465 4.002982 TGGTTGTCCAAGAATCTCGATTG 58.997 43.478 0.00 0.00 41.25 2.67
487 514 1.672881 AGGCAAATAAGCGAGCATGTC 59.327 47.619 0.00 0.00 34.64 3.06
489 516 2.855963 CAAAGGCAAATAAGCGAGCATG 59.144 45.455 0.00 0.00 34.64 4.06
490 517 2.736400 GCAAAGGCAAATAAGCGAGCAT 60.736 45.455 0.00 0.00 40.72 3.79
491 518 1.402720 GCAAAGGCAAATAAGCGAGCA 60.403 47.619 0.00 0.00 40.72 4.26
492 519 1.135286 AGCAAAGGCAAATAAGCGAGC 60.135 47.619 0.00 0.00 44.61 5.03
493 520 2.927553 AGCAAAGGCAAATAAGCGAG 57.072 45.000 0.00 0.00 44.61 5.03
494 521 3.658757 AAAGCAAAGGCAAATAAGCGA 57.341 38.095 0.00 0.00 44.61 4.93
495 522 4.448732 AGAAAAAGCAAAGGCAAATAAGCG 59.551 37.500 0.00 0.00 44.61 4.68
506 538 7.043788 GCAAAGACAGAAGTAGAAAAAGCAAAG 60.044 37.037 0.00 0.00 0.00 2.77
512 544 6.751514 TGTGCAAAGACAGAAGTAGAAAAA 57.248 33.333 0.00 0.00 0.00 1.94
517 549 6.238049 GCATAGATGTGCAAAGACAGAAGTAG 60.238 42.308 0.00 0.00 44.43 2.57
519 551 4.394300 GCATAGATGTGCAAAGACAGAAGT 59.606 41.667 0.00 0.00 44.43 3.01
522 554 3.273434 GGCATAGATGTGCAAAGACAGA 58.727 45.455 3.93 0.00 46.81 3.41
531 563 1.656652 ACGAGTTGGCATAGATGTGC 58.343 50.000 0.00 0.00 44.31 4.57
554 586 8.043429 AGGATAGGGCGTACTACTATATATGT 57.957 38.462 0.00 0.00 0.00 2.29
555 587 8.784994 CAAGGATAGGGCGTACTACTATATATG 58.215 40.741 0.00 0.00 0.00 1.78
556 588 8.501070 ACAAGGATAGGGCGTACTACTATATAT 58.499 37.037 0.00 0.00 0.00 0.86
557 589 7.772292 CACAAGGATAGGGCGTACTACTATATA 59.228 40.741 0.00 0.00 0.00 0.86
558 590 6.602406 CACAAGGATAGGGCGTACTACTATAT 59.398 42.308 0.00 0.00 0.00 0.86
559 591 5.942236 CACAAGGATAGGGCGTACTACTATA 59.058 44.000 0.00 0.00 0.00 1.31
560 592 4.765856 CACAAGGATAGGGCGTACTACTAT 59.234 45.833 0.00 0.00 0.00 2.12
561 593 4.139786 CACAAGGATAGGGCGTACTACTA 58.860 47.826 0.00 0.00 0.00 1.82
562 594 2.957006 CACAAGGATAGGGCGTACTACT 59.043 50.000 0.00 0.00 0.00 2.57
563 595 2.545322 GCACAAGGATAGGGCGTACTAC 60.545 54.545 0.00 0.00 0.00 2.73
564 596 1.684983 GCACAAGGATAGGGCGTACTA 59.315 52.381 0.00 0.00 0.00 1.82
565 597 0.464452 GCACAAGGATAGGGCGTACT 59.536 55.000 0.00 0.00 0.00 2.73
566 598 0.177141 TGCACAAGGATAGGGCGTAC 59.823 55.000 0.00 0.00 0.00 3.67
567 599 1.128200 ATGCACAAGGATAGGGCGTA 58.872 50.000 0.00 0.00 0.00 4.42
568 600 0.255890 AATGCACAAGGATAGGGCGT 59.744 50.000 0.00 0.00 0.00 5.68
569 601 1.066002 CAAATGCACAAGGATAGGGCG 59.934 52.381 0.00 0.00 0.00 6.13
570 602 2.102578 ACAAATGCACAAGGATAGGGC 58.897 47.619 0.00 0.00 0.00 5.19
571 603 4.806640 AAACAAATGCACAAGGATAGGG 57.193 40.909 0.00 0.00 0.00 3.53
572 604 5.409214 CCAAAAACAAATGCACAAGGATAGG 59.591 40.000 0.00 0.00 0.00 2.57
573 605 6.222389 TCCAAAAACAAATGCACAAGGATAG 58.778 36.000 0.00 0.00 0.00 2.08
574 606 6.166984 TCCAAAAACAAATGCACAAGGATA 57.833 33.333 0.00 0.00 0.00 2.59
575 607 5.033589 TCCAAAAACAAATGCACAAGGAT 57.966 34.783 0.00 0.00 0.00 3.24
587 619 1.045911 AAGGCCCGCTCCAAAAACAA 61.046 50.000 0.00 0.00 0.00 2.83
588 620 1.456705 AAGGCCCGCTCCAAAAACA 60.457 52.632 0.00 0.00 0.00 2.83
589 621 1.006220 CAAGGCCCGCTCCAAAAAC 60.006 57.895 0.00 0.00 0.00 2.43
590 622 1.456705 ACAAGGCCCGCTCCAAAAA 60.457 52.632 0.00 0.00 0.00 1.94
591 623 2.197324 ACAAGGCCCGCTCCAAAA 59.803 55.556 0.00 0.00 0.00 2.44
626 658 4.736793 GGCATTGCAAGACATCGAATAAAG 59.263 41.667 11.39 0.00 0.00 1.85
635 667 0.961019 AACGTGGCATTGCAAGACAT 59.039 45.000 11.39 0.00 0.00 3.06
648 680 2.794910 CTCATCCGTAGCAATAACGTGG 59.205 50.000 0.00 0.00 38.67 4.94
651 683 2.404215 CCCTCATCCGTAGCAATAACG 58.596 52.381 0.00 0.00 40.01 3.18
659 691 2.417516 CCGTGCCCTCATCCGTAG 59.582 66.667 0.00 0.00 0.00 3.51
668 700 4.394712 GCTAGTGTGCCGTGCCCT 62.395 66.667 0.00 0.00 0.00 5.19
683 717 1.377536 GTAACCTCCTCTCGTACGCT 58.622 55.000 11.24 0.00 0.00 5.07
820 857 6.264841 AGTTAGACTGGGTTTTACTAGTCG 57.735 41.667 0.00 0.00 43.19 4.18
824 861 6.493458 ACGGTTAGTTAGACTGGGTTTTACTA 59.507 38.462 0.00 0.00 0.00 1.82
973 1015 2.746277 CGGGAAGGAAACGGCTGG 60.746 66.667 0.00 0.00 0.00 4.85
1125 1226 4.201970 ACAAATACAAGTCACCAACAACCG 60.202 41.667 0.00 0.00 0.00 4.44
1208 1323 1.632965 GGTAGGGGTCCGGCTTGAAT 61.633 60.000 0.00 0.00 0.00 2.57
1268 1383 2.687566 GGGTGGACGATGGGGAGT 60.688 66.667 0.00 0.00 0.00 3.85
1310 1425 4.388499 ACGAGCCCGATGCCGTTT 62.388 61.111 0.00 0.00 41.85 3.60
1338 1453 9.023962 GTAGATGAAGAAGATGATGAGGTAGAT 57.976 37.037 0.00 0.00 0.00 1.98
1380 1495 6.668283 GGGATGTACTATCATATGTGTACCCT 59.332 42.308 21.42 14.48 35.68 4.34
1393 1508 7.093684 GGAGGAATGACTAAGGGATGTACTATC 60.094 44.444 0.00 0.00 0.00 2.08
1395 1510 6.075984 GGAGGAATGACTAAGGGATGTACTA 58.924 44.000 0.00 0.00 0.00 1.82
1396 1511 4.902448 GGAGGAATGACTAAGGGATGTACT 59.098 45.833 0.00 0.00 0.00 2.73
1409 1524 3.885901 GGGCAGAATTAAGGAGGAATGAC 59.114 47.826 0.00 0.00 0.00 3.06
1557 1718 1.148157 CGACGATCATGGAGCGCTTT 61.148 55.000 13.26 0.00 45.69 3.51
1587 1748 3.284617 CATGATGGAGCCAAAGATGACA 58.715 45.455 0.00 0.00 0.00 3.58
1648 1986 9.284968 CCTCCACAAGAAATAAAAAGAGTAGAA 57.715 33.333 0.00 0.00 0.00 2.10
1662 2000 4.640771 ATAGCAGAACCTCCACAAGAAA 57.359 40.909 0.00 0.00 0.00 2.52
1665 2003 4.520492 ACAAAATAGCAGAACCTCCACAAG 59.480 41.667 0.00 0.00 0.00 3.16
1711 2049 1.076332 GGCCTAACACGCAACTACTG 58.924 55.000 0.00 0.00 0.00 2.74
1733 2071 2.294791 AGCCATGATACTCTCACTACGC 59.705 50.000 0.00 0.00 36.48 4.42
1735 2073 7.608376 TGATACTAGCCATGATACTCTCACTAC 59.392 40.741 0.00 0.00 36.48 2.73
1736 2074 7.690256 TGATACTAGCCATGATACTCTCACTA 58.310 38.462 0.00 0.00 36.48 2.74
1737 2075 6.547402 TGATACTAGCCATGATACTCTCACT 58.453 40.000 0.00 0.00 36.48 3.41
1738 2076 6.825944 TGATACTAGCCATGATACTCTCAC 57.174 41.667 0.00 0.00 36.48 3.51
1740 2078 6.127507 TGCATGATACTAGCCATGATACTCTC 60.128 42.308 18.75 5.37 41.88 3.20
1741 2079 5.718607 TGCATGATACTAGCCATGATACTCT 59.281 40.000 18.75 0.00 41.88 3.24
1742 2080 5.970592 TGCATGATACTAGCCATGATACTC 58.029 41.667 18.75 6.38 41.88 2.59
1743 2081 6.346896 CATGCATGATACTAGCCATGATACT 58.653 40.000 22.59 0.00 41.88 2.12
1751 2089 2.189594 TGGCATGCATGATACTAGCC 57.810 50.000 30.64 21.31 40.93 3.93
1752 2090 3.144506 AGTTGGCATGCATGATACTAGC 58.855 45.455 30.64 12.56 0.00 3.42
1911 2295 3.130516 TCATTAAGTCTGCCCGTAGTGAG 59.869 47.826 0.00 0.00 0.00 3.51
1912 2296 3.093814 TCATTAAGTCTGCCCGTAGTGA 58.906 45.455 0.00 0.00 0.00 3.41
1913 2297 3.520290 TCATTAAGTCTGCCCGTAGTG 57.480 47.619 0.00 0.00 0.00 2.74
1914 2298 3.741388 GCATCATTAAGTCTGCCCGTAGT 60.741 47.826 0.00 0.00 0.00 2.73
1915 2299 2.802816 GCATCATTAAGTCTGCCCGTAG 59.197 50.000 0.00 0.00 0.00 3.51
1917 2301 1.065491 TGCATCATTAAGTCTGCCCGT 60.065 47.619 4.16 0.00 33.70 5.28
1918 2302 1.331756 GTGCATCATTAAGTCTGCCCG 59.668 52.381 0.00 0.00 33.70 6.13
1919 2303 1.331756 CGTGCATCATTAAGTCTGCCC 59.668 52.381 0.00 0.00 33.70 5.36
1920 2304 2.009774 ACGTGCATCATTAAGTCTGCC 58.990 47.619 0.00 0.00 33.70 4.85
1921 2305 2.416547 ACACGTGCATCATTAAGTCTGC 59.583 45.455 17.22 0.00 35.21 4.26
1922 2306 3.181517 CCACACGTGCATCATTAAGTCTG 60.182 47.826 17.22 0.93 0.00 3.51
1933 2330 0.536233 TTGGTTAGCCACACGTGCAT 60.536 50.000 17.22 1.25 46.01 3.96
1934 2331 1.153147 TTGGTTAGCCACACGTGCA 60.153 52.632 17.22 0.00 46.01 4.57
1971 2373 1.668419 AGCCATACGGAATGCAAGTC 58.332 50.000 0.00 0.00 33.92 3.01
2030 2439 3.320826 TCACTCAACAGCTAGCTAACACA 59.679 43.478 18.86 0.00 0.00 3.72
2037 2446 1.721926 GAACGTCACTCAACAGCTAGC 59.278 52.381 6.62 6.62 0.00 3.42
2038 2447 3.013276 TGAACGTCACTCAACAGCTAG 57.987 47.619 0.00 0.00 0.00 3.42
2039 2448 3.005367 TCATGAACGTCACTCAACAGCTA 59.995 43.478 0.00 0.00 0.00 3.32
2040 2449 2.138320 CATGAACGTCACTCAACAGCT 58.862 47.619 0.00 0.00 0.00 4.24
2109 2541 2.749600 TGCAATGCATCCCCAAGTTAT 58.250 42.857 2.72 0.00 31.71 1.89
2112 2544 4.870069 TGCAATGCATCCCCAAGT 57.130 50.000 2.72 0.00 31.71 3.16
2153 2585 4.935352 AAAGGCAAAGATTACAACAGCA 57.065 36.364 0.00 0.00 0.00 4.41
2154 2586 5.288804 TCAAAAGGCAAAGATTACAACAGC 58.711 37.500 0.00 0.00 0.00 4.40
2176 2608 4.704057 AGTTGGCAAAAGAGAAGGATCATC 59.296 41.667 0.00 0.00 0.00 2.92
2177 2609 4.670765 AGTTGGCAAAAGAGAAGGATCAT 58.329 39.130 0.00 0.00 0.00 2.45
2187 2619 4.041567 TCACCTCATAGAGTTGGCAAAAGA 59.958 41.667 0.00 0.00 0.00 2.52
2239 2680 3.899981 GATGTCAGTGGCCGGTGCA 62.900 63.158 1.90 1.11 40.13 4.57
2245 2686 3.268103 AACCCCGATGTCAGTGGCC 62.268 63.158 0.00 0.00 0.00 5.36
2252 2693 2.222027 GATTCATGGAACCCCGATGTC 58.778 52.381 0.00 0.00 34.29 3.06
2264 2705 0.183492 ATGACCCACGGGATTCATGG 59.817 55.000 9.72 0.00 38.96 3.66
2293 2734 5.521010 TGAGTAAACAAGTTACGACACCAAG 59.479 40.000 0.00 0.00 45.84 3.61
2295 2736 5.008619 TGAGTAAACAAGTTACGACACCA 57.991 39.130 0.00 0.00 45.84 4.17
2296 2737 5.693104 TGATGAGTAAACAAGTTACGACACC 59.307 40.000 0.00 0.00 45.84 4.16
2297 2738 6.758593 TGATGAGTAAACAAGTTACGACAC 57.241 37.500 0.00 0.00 45.84 3.67
2298 2739 7.375834 AGATGATGAGTAAACAAGTTACGACA 58.624 34.615 0.00 0.00 45.84 4.35
2300 2741 8.188799 CCTAGATGATGAGTAAACAAGTTACGA 58.811 37.037 0.00 0.00 45.84 3.43
2302 2743 9.303537 GACCTAGATGATGAGTAAACAAGTTAC 57.696 37.037 0.00 0.00 42.22 2.50
2303 2744 9.031537 TGACCTAGATGATGAGTAAACAAGTTA 57.968 33.333 0.00 0.00 0.00 2.24
2324 2799 6.540189 GCTGAGTCATTAAATGTACATGACCT 59.460 38.462 18.46 9.38 45.42 3.85
2325 2800 6.238484 GGCTGAGTCATTAAATGTACATGACC 60.238 42.308 18.46 12.52 45.42 4.02
2326 2801 6.540189 AGGCTGAGTCATTAAATGTACATGAC 59.460 38.462 9.63 13.29 44.88 3.06
2331 2809 6.546395 CACAAGGCTGAGTCATTAAATGTAC 58.454 40.000 0.00 0.00 0.00 2.90
2381 2859 4.588899 TGCAAGCAGGATACAATGTTAGT 58.411 39.130 0.00 0.00 41.41 2.24
2382 2860 5.165911 CTGCAAGCAGGATACAATGTTAG 57.834 43.478 14.10 0.00 40.17 2.34
2416 2895 1.122019 ACTCCACGCTCTTGGTCCTT 61.122 55.000 0.00 0.00 37.93 3.36
2452 2931 0.976641 TGAGGAAGTTCACCAGCGAT 59.023 50.000 5.01 0.00 0.00 4.58
2488 2967 6.959588 TCAAACTTGATGAGCGCATAGGCT 62.960 45.833 11.47 0.00 37.95 4.58
2509 2988 2.007608 CTGACCGTCACGTAGAGATCA 58.992 52.381 0.00 0.00 0.00 2.92
2521 3000 4.154737 TGTGTATGTAGTGTACTGACCGTC 59.845 45.833 0.00 0.00 0.00 4.79
2534 3013 8.815189 CAACTTCTTGATGAGATGTGTATGTAG 58.185 37.037 0.00 0.00 40.70 2.74
2558 3037 4.461081 AGTGTAAGTTTGGTTGAGTTGCAA 59.539 37.500 0.00 0.00 0.00 4.08
2559 3038 4.013728 AGTGTAAGTTTGGTTGAGTTGCA 58.986 39.130 0.00 0.00 0.00 4.08
2561 3040 5.730568 GCAGAGTGTAAGTTTGGTTGAGTTG 60.731 44.000 0.00 0.00 0.00 3.16
2562 3041 4.335594 GCAGAGTGTAAGTTTGGTTGAGTT 59.664 41.667 0.00 0.00 0.00 3.01
2563 3042 3.877508 GCAGAGTGTAAGTTTGGTTGAGT 59.122 43.478 0.00 0.00 0.00 3.41
2564 3043 3.876914 TGCAGAGTGTAAGTTTGGTTGAG 59.123 43.478 0.00 0.00 0.00 3.02
2565 3044 3.879998 TGCAGAGTGTAAGTTTGGTTGA 58.120 40.909 0.00 0.00 0.00 3.18
2566 3045 4.516698 AGATGCAGAGTGTAAGTTTGGTTG 59.483 41.667 0.00 0.00 0.00 3.77
2567 3046 4.718961 AGATGCAGAGTGTAAGTTTGGTT 58.281 39.130 0.00 0.00 0.00 3.67
2568 3047 4.357918 AGATGCAGAGTGTAAGTTTGGT 57.642 40.909 0.00 0.00 0.00 3.67
2625 3104 9.983024 TGGGGATCTACACATAATTAAGAAAAA 57.017 29.630 0.00 0.00 0.00 1.94
2628 3107 9.573166 CATTGGGGATCTACACATAATTAAGAA 57.427 33.333 0.00 0.00 0.00 2.52
2630 3109 7.094205 GCCATTGGGGATCTACACATAATTAAG 60.094 40.741 4.53 0.00 40.01 1.85
2642 3121 1.127567 CCGAGGCCATTGGGGATCTA 61.128 60.000 5.01 0.00 40.01 1.98
2678 3157 0.965439 GCGTAGAGGATCAGCTGGAT 59.035 55.000 15.13 6.11 37.82 3.41
2716 3195 0.804156 CGCTCTTCTCCTTCTTCGGC 60.804 60.000 0.00 0.00 0.00 5.54
2749 3228 0.449786 CAGTGTTGTTGTTGACGGCA 59.550 50.000 0.00 0.00 0.00 5.69
2753 3232 0.248458 CCGCCAGTGTTGTTGTTGAC 60.248 55.000 0.00 0.00 0.00 3.18
2807 3289 0.166814 GCTACTGTTGCAAAGCCGAG 59.833 55.000 9.29 1.69 0.00 4.63
2808 3290 0.533978 TGCTACTGTTGCAAAGCCGA 60.534 50.000 14.28 0.00 37.51 5.54
2819 3303 1.302832 GCTGTGGGCTTGCTACTGT 60.303 57.895 0.00 0.00 38.06 3.55
2833 3317 1.091771 CGGATTTGATCGCTGGCTGT 61.092 55.000 0.00 0.00 0.00 4.40
2835 3319 1.524621 CCGGATTTGATCGCTGGCT 60.525 57.895 0.00 0.00 0.00 4.75
2837 3321 2.546494 GGCCGGATTTGATCGCTGG 61.546 63.158 5.05 0.00 0.00 4.85
2839 3323 2.203209 GGGCCGGATTTGATCGCT 60.203 61.111 5.05 0.00 0.00 4.93
2840 3324 2.515991 TGGGCCGGATTTGATCGC 60.516 61.111 5.05 0.00 0.00 4.58
2862 3346 4.977393 GGGCTAAAATCTCGGCCA 57.023 55.556 2.24 0.00 45.68 5.36
2866 3350 5.567138 AAATGTCTTGGGCTAAAATCTCG 57.433 39.130 0.00 0.00 0.00 4.04
2879 3363 9.226345 GAAGTCTTAACTGTTCAAAATGTCTTG 57.774 33.333 0.00 0.00 35.36 3.02
2882 3366 6.851330 CGGAAGTCTTAACTGTTCAAAATGTC 59.149 38.462 0.00 0.00 35.36 3.06
2887 3371 5.026038 TCCGGAAGTCTTAACTGTTCAAA 57.974 39.130 0.00 0.00 35.36 2.69
2893 3377 3.557595 GCATCATCCGGAAGTCTTAACTG 59.442 47.826 9.01 0.00 35.36 3.16
2899 3383 1.833630 TGAAGCATCATCCGGAAGTCT 59.166 47.619 9.01 0.36 0.00 3.24
2902 3386 2.358957 TGTTGAAGCATCATCCGGAAG 58.641 47.619 9.01 3.44 34.96 3.46
2907 3391 3.366679 CCACACTTGTTGAAGCATCATCC 60.367 47.826 0.00 0.00 34.96 3.51
2909 3393 3.005050 CACCACACTTGTTGAAGCATCAT 59.995 43.478 0.00 0.00 34.96 2.45
2913 3397 0.455410 GCACCACACTTGTTGAAGCA 59.545 50.000 0.00 0.00 31.68 3.91
2920 3404 1.971357 ACTAGCTAGCACCACACTTGT 59.029 47.619 20.91 0.00 0.00 3.16
2952 3436 6.093771 CACACTTAGACGACTCTACCTAACAT 59.906 42.308 0.00 0.00 0.00 2.71
2953 3437 5.410746 CACACTTAGACGACTCTACCTAACA 59.589 44.000 0.00 0.00 0.00 2.41
2954 3438 5.673318 GCACACTTAGACGACTCTACCTAAC 60.673 48.000 0.00 0.00 0.00 2.34
2955 3439 4.394300 GCACACTTAGACGACTCTACCTAA 59.606 45.833 0.00 0.00 0.00 2.69
2956 3440 3.937706 GCACACTTAGACGACTCTACCTA 59.062 47.826 0.00 0.00 0.00 3.08
2957 3441 2.748532 GCACACTTAGACGACTCTACCT 59.251 50.000 0.00 0.00 0.00 3.08
2958 3442 2.159407 GGCACACTTAGACGACTCTACC 60.159 54.545 0.00 0.00 0.00 3.18
2959 3443 2.748532 AGGCACACTTAGACGACTCTAC 59.251 50.000 0.00 0.00 0.00 2.59
2960 3444 3.069079 AGGCACACTTAGACGACTCTA 57.931 47.619 0.00 0.00 0.00 2.43
3007 3491 5.437289 TTGTTCCATCAGTTTTGCACTAG 57.563 39.130 0.00 0.00 32.76 2.57
3071 3555 0.390998 GAGAGAGCAGGTGACAAGCC 60.391 60.000 0.00 0.00 34.58 4.35
3096 3580 3.188786 GCGCGCCAACCAGAGTAG 61.189 66.667 23.24 0.00 0.00 2.57
3097 3581 2.997952 TTTGCGCGCCAACCAGAGTA 62.998 55.000 30.77 1.61 31.97 2.59
3164 3648 1.144969 GGCATCGTCACGTGAAAAGA 58.855 50.000 21.95 19.46 0.00 2.52
3223 3707 1.071959 CACACCGAAACGTACACGAAC 60.072 52.381 9.04 0.00 43.02 3.95
3227 3711 1.256117 GACACACACCGAAACGTACAC 59.744 52.381 0.00 0.00 0.00 2.90
3232 3716 1.784856 CACTAGACACACACCGAAACG 59.215 52.381 0.00 0.00 0.00 3.60
3233 3717 2.817901 ACACTAGACACACACCGAAAC 58.182 47.619 0.00 0.00 0.00 2.78
3234 3718 3.551454 GCTACACTAGACACACACCGAAA 60.551 47.826 0.00 0.00 0.00 3.46
3235 3719 2.030540 GCTACACTAGACACACACCGAA 60.031 50.000 0.00 0.00 0.00 4.30
3236 3720 1.538512 GCTACACTAGACACACACCGA 59.461 52.381 0.00 0.00 0.00 4.69
3237 3721 1.268625 TGCTACACTAGACACACACCG 59.731 52.381 0.00 0.00 0.00 4.94
3238 3722 2.296471 ACTGCTACACTAGACACACACC 59.704 50.000 0.00 0.00 0.00 4.16
3290 3774 5.237996 GGTCCAAGTTTAAGTTAGTGGTGTC 59.762 44.000 0.00 0.00 0.00 3.67
3292 3776 5.374071 AGGTCCAAGTTTAAGTTAGTGGTG 58.626 41.667 0.00 0.00 0.00 4.17
3417 3903 6.268158 TGCGGGTAACATCTGGATAGTTATAA 59.732 38.462 0.00 0.00 39.74 0.98
3418 3904 5.776208 TGCGGGTAACATCTGGATAGTTATA 59.224 40.000 0.00 0.00 39.74 0.98
3419 3905 4.591498 TGCGGGTAACATCTGGATAGTTAT 59.409 41.667 0.00 0.00 39.74 1.89
3420 3906 3.962063 TGCGGGTAACATCTGGATAGTTA 59.038 43.478 0.00 0.00 39.74 2.24
3421 3907 2.769663 TGCGGGTAACATCTGGATAGTT 59.230 45.455 0.00 0.00 39.74 2.24
3422 3908 2.394632 TGCGGGTAACATCTGGATAGT 58.605 47.619 0.00 0.00 39.74 2.12
3423 3909 3.469008 TTGCGGGTAACATCTGGATAG 57.531 47.619 0.00 0.00 39.74 2.08
3424 3910 3.916359 TTTGCGGGTAACATCTGGATA 57.084 42.857 0.00 0.00 39.74 2.59
3428 3914 4.497473 TTTCTTTTGCGGGTAACATCTG 57.503 40.909 0.00 0.00 39.74 2.90
3430 3916 5.044558 TGTTTTTCTTTTGCGGGTAACATC 58.955 37.500 0.00 0.00 39.74 3.06
3454 3940 9.476202 CTGAAATATTGTACGGAAGATGACATA 57.524 33.333 0.00 0.00 0.00 2.29
3465 3951 4.127171 CCACCCTCTGAAATATTGTACGG 58.873 47.826 0.00 0.00 0.00 4.02
3466 3952 4.766375 ACCACCCTCTGAAATATTGTACG 58.234 43.478 0.00 0.00 0.00 3.67
3502 3988 7.652727 TCACACATGAATTTTCCGAAATTGTA 58.347 30.769 0.00 0.00 43.61 2.41
3547 4034 5.527582 ACCGGTCTTAGTTTGATATTCATGC 59.472 40.000 0.00 0.00 0.00 4.06
3549 4036 5.527582 GCACCGGTCTTAGTTTGATATTCAT 59.472 40.000 2.59 0.00 0.00 2.57
3561 4048 0.172578 TCATCGTGCACCGGTCTTAG 59.827 55.000 12.15 0.00 37.11 2.18
3566 4053 2.358247 GGTTCATCGTGCACCGGT 60.358 61.111 12.15 0.00 37.11 5.28
3575 4062 4.094887 CCAAGTAGAAACATGGGTTCATCG 59.905 45.833 12.37 0.00 40.16 3.84
3601 4088 4.952460 AGTTTGATATTCATGCAATGGGC 58.048 39.130 0.00 0.00 46.73 5.36
3610 4097 5.527582 GCACCGGTCTTAGTTTGATATTCAT 59.472 40.000 2.59 0.00 0.00 2.57
3614 4101 4.189231 GTGCACCGGTCTTAGTTTGATAT 58.811 43.478 2.59 0.00 0.00 1.63
3618 4105 1.588674 TGTGCACCGGTCTTAGTTTG 58.411 50.000 15.69 0.00 0.00 2.93
3619 4106 2.151202 CATGTGCACCGGTCTTAGTTT 58.849 47.619 15.69 0.00 0.00 2.66
3620 4107 1.808411 CATGTGCACCGGTCTTAGTT 58.192 50.000 15.69 0.00 0.00 2.24
3622 4109 2.089854 GCATGTGCACCGGTCTTAG 58.910 57.895 15.69 0.00 41.59 2.18
3633 4120 3.114527 TGGTATCCCATGCATGTGC 57.885 52.632 24.58 10.30 35.17 4.57
3647 4750 2.794103 GGTGCATATGCCATGATGGTA 58.206 47.619 24.54 9.35 40.46 3.25
3682 4785 7.558161 TCACTAAGCATTGTCCAGAAATATG 57.442 36.000 0.00 0.00 0.00 1.78
3757 4860 6.151144 ACATATTAAAAGTCTCAACCAGGCAC 59.849 38.462 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.