Multiple sequence alignment - TraesCS7B01G410400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G410400 chr7B 100.000 3894 0 0 551 4444 679636213 679632320 0.000000e+00 7191.0
1 TraesCS7B01G410400 chr7B 88.386 1214 135 6 1888 3098 679672757 679671547 0.000000e+00 1456.0
2 TraesCS7B01G410400 chr7B 88.409 811 85 8 1825 2628 679789219 679790027 0.000000e+00 968.0
3 TraesCS7B01G410400 chr7B 88.428 579 55 7 1205 1771 679788625 679789203 0.000000e+00 688.0
4 TraesCS7B01G410400 chr7B 90.595 521 43 4 1195 1715 679673339 679672825 0.000000e+00 686.0
5 TraesCS7B01G410400 chr7B 100.000 346 0 0 1 346 679636763 679636418 1.350000e-179 640.0
6 TraesCS7B01G410400 chr7B 87.238 478 59 2 2624 3100 679793153 679793629 1.090000e-150 544.0
7 TraesCS7B01G410400 chr7D 93.175 2491 126 25 1075 3548 599799174 599796711 0.000000e+00 3618.0
8 TraesCS7B01G410400 chr7D 88.785 1284 132 11 1825 3100 600448994 600450273 0.000000e+00 1563.0
9 TraesCS7B01G410400 chr7D 88.138 1214 138 6 1888 3098 599809722 599808512 0.000000e+00 1439.0
10 TraesCS7B01G410400 chr7D 91.979 561 33 7 1205 1753 600448400 600448960 0.000000e+00 776.0
11 TraesCS7B01G410400 chr7D 96.210 343 13 0 1 343 599802564 599802222 3.000000e-156 562.0
12 TraesCS7B01G410400 chr7D 85.612 556 48 17 1164 1715 599810317 599809790 5.020000e-154 555.0
13 TraesCS7B01G410400 chr7D 96.377 276 7 1 555 827 599802111 599801836 6.780000e-123 451.0
14 TraesCS7B01G410400 chr7D 96.414 251 7 2 828 1078 599800311 599800063 3.200000e-111 412.0
15 TraesCS7B01G410400 chr7D 81.295 278 41 6 3910 4177 558165812 558166088 9.680000e-52 215.0
16 TraesCS7B01G410400 chr7D 74.293 389 68 22 617 985 370199592 370199216 7.750000e-28 135.0
17 TraesCS7B01G410400 chr7A 94.294 1770 76 8 1626 3389 692027528 692025778 0.000000e+00 2686.0
18 TraesCS7B01G410400 chr7A 87.084 1262 125 16 1844 3100 692338304 692339532 0.000000e+00 1393.0
19 TraesCS7B01G410400 chr7A 93.625 549 34 1 1082 1630 692038917 692038370 0.000000e+00 819.0
20 TraesCS7B01G410400 chr7A 86.254 662 89 2 1888 2548 692049247 692048587 0.000000e+00 717.0
21 TraesCS7B01G410400 chr7A 88.339 566 58 5 1152 1715 692049874 692049315 0.000000e+00 673.0
22 TraesCS7B01G410400 chr7A 87.657 559 65 4 2541 3097 692045804 692045248 0.000000e+00 647.0
23 TraesCS7B01G410400 chr7A 89.655 464 44 1 3718 4177 692025610 692025147 4.950000e-164 588.0
24 TraesCS7B01G410400 chr7A 89.324 281 29 1 4165 4444 603485732 603485452 7.070000e-93 351.0
25 TraesCS7B01G410400 chr7A 81.455 275 38 7 3914 4177 715772677 715772949 3.480000e-51 213.0
26 TraesCS7B01G410400 chr7A 79.926 269 41 8 3914 4171 245986663 245986397 7.590000e-43 185.0
27 TraesCS7B01G410400 chr7A 79.853 273 35 4 3914 4177 609264458 609264197 9.820000e-42 182.0
28 TraesCS7B01G410400 chr7A 90.826 109 9 1 3407 3515 692025790 692025683 1.290000e-30 145.0
29 TraesCS7B01G410400 chr6A 78.442 1104 216 17 2012 3098 129939442 129938344 0.000000e+00 701.0
30 TraesCS7B01G410400 chr6A 80.550 509 92 6 1273 1776 129940154 129939648 6.970000e-103 385.0
31 TraesCS7B01G410400 chr5B 95.926 270 10 1 4176 4444 621528394 621528125 1.900000e-118 436.0
32 TraesCS7B01G410400 chr5B 95.149 268 13 0 4177 4444 20690612 20690345 1.480000e-114 424.0
33 TraesCS7B01G410400 chr5B 81.655 278 40 8 3910 4177 519662533 519662809 2.080000e-53 220.0
34 TraesCS7B01G410400 chr3B 94.891 274 14 0 4171 4444 396623273 396623546 3.180000e-116 429.0
35 TraesCS7B01G410400 chr3B 94.265 279 15 1 4167 4444 160702792 160703070 4.110000e-115 425.0
36 TraesCS7B01G410400 chr2B 95.149 268 13 0 4177 4444 15737562 15737295 1.480000e-114 424.0
37 TraesCS7B01G410400 chr2B 89.606 279 28 1 4166 4444 58770851 58770574 1.970000e-93 353.0
38 TraesCS7B01G410400 chr2B 87.273 220 25 3 4164 4382 203982025 203982242 9.550000e-62 248.0
39 TraesCS7B01G410400 chr2B 86.222 225 25 6 4164 4385 73618951 73618730 5.740000e-59 239.0
40 TraesCS7B01G410400 chr4B 93.238 281 19 0 4164 4444 57599032 57598752 8.890000e-112 414.0
41 TraesCS7B01G410400 chr6B 80.588 510 90 9 1273 1780 194426078 194425576 6.970000e-103 385.0
42 TraesCS7B01G410400 chr6B 89.474 133 13 1 3581 3712 143198073 143198205 2.750000e-37 167.0
43 TraesCS7B01G410400 chr5A 87.189 281 34 2 4165 4444 136517357 136517636 7.170000e-83 318.0
44 TraesCS7B01G410400 chr5A 81.752 274 40 6 3914 4177 429517036 429516763 2.080000e-53 220.0
45 TraesCS7B01G410400 chr4A 88.060 268 28 4 4166 4433 485409720 485409983 9.280000e-82 315.0
46 TraesCS7B01G410400 chr4A 76.489 319 58 12 15 331 103335880 103336183 1.650000e-34 158.0
47 TraesCS7B01G410400 chr2D 85.036 274 32 6 3913 4177 139739938 139739665 2.040000e-68 270.0
48 TraesCS7B01G410400 chr2D 82.847 274 38 5 3913 4177 318261075 318260802 2.070000e-58 237.0
49 TraesCS7B01G410400 chr2D 86.740 181 23 1 3901 4080 618867493 618867673 2.710000e-47 200.0
50 TraesCS7B01G410400 chr2D 78.292 281 48 8 3906 4177 599890672 599890396 7.640000e-38 169.0
51 TraesCS7B01G410400 chr3A 82.014 278 40 6 3909 4177 681566322 681566598 1.240000e-55 228.0
52 TraesCS7B01G410400 chrUn 81.949 277 40 6 3910 4177 363762935 363763210 4.470000e-55 226.0
53 TraesCS7B01G410400 chr6D 81.387 274 42 5 3913 4177 178136708 178136435 9.680000e-52 215.0
54 TraesCS7B01G410400 chr5D 79.710 276 43 9 3913 4177 211927246 211927519 2.110000e-43 187.0
55 TraesCS7B01G410400 chr1B 79.422 277 36 14 3898 4164 625144826 625144561 4.570000e-40 176.0
56 TraesCS7B01G410400 chr1B 78.000 100 17 3 911 1006 586286352 586286450 1.730000e-04 58.4
57 TraesCS7B01G410400 chr1D 78.218 101 19 2 909 1006 433865179 433865279 1.330000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G410400 chr7B 679632320 679636763 4443 True 3915.500000 7191 100.000000 1 4444 2 chr7B.!!$R1 4443
1 TraesCS7B01G410400 chr7B 679671547 679673339 1792 True 1071.000000 1456 89.490500 1195 3098 2 chr7B.!!$R2 1903
2 TraesCS7B01G410400 chr7B 679788625 679793629 5004 False 733.333333 968 88.025000 1205 3100 3 chr7B.!!$F1 1895
3 TraesCS7B01G410400 chr7D 599796711 599802564 5853 True 1260.750000 3618 95.544000 1 3548 4 chr7D.!!$R2 3547
4 TraesCS7B01G410400 chr7D 600448400 600450273 1873 False 1169.500000 1563 90.382000 1205 3100 2 chr7D.!!$F2 1895
5 TraesCS7B01G410400 chr7D 599808512 599810317 1805 True 997.000000 1439 86.875000 1164 3098 2 chr7D.!!$R3 1934
6 TraesCS7B01G410400 chr7A 692338304 692339532 1228 False 1393.000000 1393 87.084000 1844 3100 1 chr7A.!!$F1 1256
7 TraesCS7B01G410400 chr7A 692025147 692027528 2381 True 1139.666667 2686 91.591667 1626 4177 3 chr7A.!!$R5 2551
8 TraesCS7B01G410400 chr7A 692038370 692038917 547 True 819.000000 819 93.625000 1082 1630 1 chr7A.!!$R4 548
9 TraesCS7B01G410400 chr7A 692045248 692049874 4626 True 679.000000 717 87.416667 1152 3097 3 chr7A.!!$R6 1945
10 TraesCS7B01G410400 chr6A 129938344 129940154 1810 True 543.000000 701 79.496000 1273 3098 2 chr6A.!!$R1 1825
11 TraesCS7B01G410400 chr6B 194425576 194426078 502 True 385.000000 385 80.588000 1273 1780 1 chr6B.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
339 340 0.461339 GCATTGCCCATTCTGCCAAG 60.461 55.000 0.00 0.0 0.0 3.61 F
1034 2562 0.321671 CGAAAGAAGGAGCCCAGACA 59.678 55.000 0.00 0.0 0.0 3.41 F
1883 4335 1.010125 GCAACAAGAAGCGCACGAA 60.010 52.632 11.47 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1173 3592 0.540830 TGGTTGATCGGTTTTGGGGG 60.541 55.0 0.00 0.0 0.00 5.40 R
2755 11144 1.913951 ATGCGCTGGATGAACTGGGA 61.914 55.0 9.73 0.0 0.00 4.37 R
3658 12105 0.036671 CCGAGTTTAAGTCCCGGCTT 60.037 55.0 0.00 0.0 33.47 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.304257 CCATGCGAAGTCATTTGGCTATC 60.304 47.826 0.00 0.00 40.72 2.08
30 31 2.984562 TGCGAAGTCATTTGGCTATCA 58.015 42.857 0.00 0.00 40.72 2.15
81 82 2.816689 AGTATTGCAGCGCGTATACAA 58.183 42.857 8.43 8.21 33.87 2.41
146 147 4.515361 TCGTAAGTTTCCCTTTGTGTTGA 58.485 39.130 0.00 0.00 34.46 3.18
186 187 8.149647 TCATTGGATTTATTTGCTCTTTGTTGT 58.850 29.630 0.00 0.00 0.00 3.32
194 195 4.355543 TTGCTCTTTGTTGTGACTTGTC 57.644 40.909 0.00 0.00 0.00 3.18
257 258 0.537188 CCTTGTACTGCCAGACCGAT 59.463 55.000 0.00 0.00 0.00 4.18
339 340 0.461339 GCATTGCCCATTCTGCCAAG 60.461 55.000 0.00 0.00 0.00 3.61
343 344 0.749091 TGCCCATTCTGCCAAGATCG 60.749 55.000 0.00 0.00 30.72 3.69
344 345 0.749454 GCCCATTCTGCCAAGATCGT 60.749 55.000 0.00 0.00 30.72 3.73
606 607 6.097696 TGTTGGACTAATTCGAGGACATCATA 59.902 38.462 0.00 0.00 0.00 2.15
685 686 3.012518 GAGGTTTGACATGTCCATGGAG 58.987 50.000 22.85 6.28 42.91 3.86
697 698 3.256383 TGTCCATGGAGATGCAAAACAAG 59.744 43.478 16.81 0.00 0.00 3.16
799 803 4.137543 GGTGAAGTTGTTCAGGACATTCT 58.862 43.478 0.00 0.00 43.55 2.40
831 2359 9.974980 ACCATGTAAAAACGATTTGTCTAAAAT 57.025 25.926 0.00 0.00 0.00 1.82
861 2389 7.210174 GTGAAAAGGAGCTCAAAAATTAAGGT 58.790 34.615 17.19 0.00 0.00 3.50
867 2395 6.323739 AGGAGCTCAAAAATTAAGGTTTGACA 59.676 34.615 17.19 0.00 38.50 3.58
1034 2562 0.321671 CGAAAGAAGGAGCCCAGACA 59.678 55.000 0.00 0.00 0.00 3.41
1087 3506 2.921490 GCCTCTATACCGCTCGCTTTAC 60.921 54.545 0.00 0.00 0.00 2.01
1095 3514 1.012234 GCTCGCTTTACATTCGCCG 60.012 57.895 0.00 0.00 0.00 6.46
1159 3578 1.128200 AAACCTCCCAAAAACCCTGC 58.872 50.000 0.00 0.00 0.00 4.85
1173 3592 4.404654 CTGCGCCAAAACCCTCGC 62.405 66.667 4.18 0.00 46.78 5.03
1399 3843 1.737008 GAGAACAACTCCCCGACGC 60.737 63.158 0.00 0.00 39.53 5.19
1795 4239 3.072468 CCCACCCGACCTTCGCTA 61.072 66.667 0.00 0.00 38.82 4.26
1818 4262 3.262686 GCCCGTTTCCGATCTCGC 61.263 66.667 0.00 0.00 38.18 5.03
1883 4335 1.010125 GCAACAAGAAGCGCACGAA 60.010 52.632 11.47 0.00 0.00 3.85
2068 4521 2.035940 ACCTTCTCGCCGAGGACT 59.964 61.111 15.08 0.00 0.00 3.85
2199 4655 1.617839 CCTCTTCCCCAAGGGCTCT 60.618 63.158 0.00 0.00 43.94 4.09
2985 11374 3.139469 TACGCCGACGCCATACCA 61.139 61.111 0.00 0.00 45.53 3.25
3075 11464 2.347490 GTCAGCGGCTTCTCCCAA 59.653 61.111 0.00 0.00 0.00 4.12
3125 11514 3.580895 GACCCAGAGGAAGAAGAAGAACT 59.419 47.826 0.00 0.00 36.73 3.01
3129 11518 5.012148 CCCAGAGGAAGAAGAAGAACTACAA 59.988 44.000 0.00 0.00 33.47 2.41
3134 11523 7.071321 AGAGGAAGAAGAAGAACTACAAAAGGA 59.929 37.037 0.00 0.00 0.00 3.36
3136 11525 8.053355 AGGAAGAAGAAGAACTACAAAAGGAAA 58.947 33.333 0.00 0.00 0.00 3.13
3138 11527 9.504710 GAAGAAGAAGAACTACAAAAGGAAAAC 57.495 33.333 0.00 0.00 0.00 2.43
3193 11582 7.165977 GGAATTCGAAACAAGAAGAAGAACAAC 59.834 37.037 0.00 0.00 0.00 3.32
3194 11583 6.489127 TTCGAAACAAGAAGAAGAACAACA 57.511 33.333 0.00 0.00 0.00 3.33
3195 11584 6.106877 TCGAAACAAGAAGAAGAACAACAG 57.893 37.500 0.00 0.00 0.00 3.16
3196 11585 5.872617 TCGAAACAAGAAGAAGAACAACAGA 59.127 36.000 0.00 0.00 0.00 3.41
3197 11586 6.370442 TCGAAACAAGAAGAAGAACAACAGAA 59.630 34.615 0.00 0.00 0.00 3.02
3198 11587 6.684555 CGAAACAAGAAGAAGAACAACAGAAG 59.315 38.462 0.00 0.00 0.00 2.85
3210 11599 7.269477 AGAACAACAGAAGGAATTGAAGAAG 57.731 36.000 0.00 0.00 0.00 2.85
3322 11715 2.538437 TCGACTACTACGTGCTCTCTC 58.462 52.381 0.00 0.00 0.00 3.20
3389 11796 4.035441 ACAATTTGCAGCGATTTTGCTTTT 59.965 33.333 0.00 0.00 44.46 2.27
3390 11797 4.816786 ATTTGCAGCGATTTTGCTTTTT 57.183 31.818 0.00 0.00 44.46 1.94
3417 11824 5.793026 TTTTTGAAACTGCGATTTTGCTT 57.207 30.435 0.00 0.00 35.36 3.91
3418 11825 5.793026 TTTTGAAACTGCGATTTTGCTTT 57.207 30.435 0.00 0.00 35.36 3.51
3419 11826 5.793026 TTTGAAACTGCGATTTTGCTTTT 57.207 30.435 0.00 0.00 35.36 2.27
3420 11827 5.388225 TTGAAACTGCGATTTTGCTTTTC 57.612 34.783 0.00 9.04 37.72 2.29
3421 11828 3.485378 TGAAACTGCGATTTTGCTTTTCG 59.515 39.130 0.00 0.00 38.92 3.46
3435 11842 5.395682 TGCTTTTCGAACCTAGCTAGTTA 57.604 39.130 19.31 0.00 34.77 2.24
3532 11979 1.782044 TTCCGCTGAAATTTTGCTGC 58.218 45.000 12.90 0.00 0.00 5.25
3549 11996 3.108289 CGCTCTGTGGTCTGTGCG 61.108 66.667 0.00 0.00 44.03 5.34
3554 12001 2.146342 CTCTGTGGTCTGTGCGATTTT 58.854 47.619 0.00 0.00 0.00 1.82
3555 12002 2.143122 TCTGTGGTCTGTGCGATTTTC 58.857 47.619 0.00 0.00 0.00 2.29
3557 12004 2.549754 CTGTGGTCTGTGCGATTTTCTT 59.450 45.455 0.00 0.00 0.00 2.52
3564 12011 6.428465 TGGTCTGTGCGATTTTCTTATTTGTA 59.572 34.615 0.00 0.00 0.00 2.41
3565 12012 6.741358 GGTCTGTGCGATTTTCTTATTTGTAC 59.259 38.462 0.00 0.00 0.00 2.90
3566 12013 7.360946 GGTCTGTGCGATTTTCTTATTTGTACT 60.361 37.037 0.00 0.00 0.00 2.73
3567 12014 7.688578 GTCTGTGCGATTTTCTTATTTGTACTC 59.311 37.037 0.00 0.00 0.00 2.59
3568 12015 6.837992 TGTGCGATTTTCTTATTTGTACTCC 58.162 36.000 0.00 0.00 0.00 3.85
3569 12016 6.428465 TGTGCGATTTTCTTATTTGTACTCCA 59.572 34.615 0.00 0.00 0.00 3.86
3570 12017 6.741358 GTGCGATTTTCTTATTTGTACTCCAC 59.259 38.462 0.00 0.00 0.00 4.02
3571 12018 5.957796 GCGATTTTCTTATTTGTACTCCACG 59.042 40.000 0.00 0.00 0.00 4.94
3572 12019 6.475207 CGATTTTCTTATTTGTACTCCACGG 58.525 40.000 0.00 0.00 0.00 4.94
3573 12020 6.311935 CGATTTTCTTATTTGTACTCCACGGA 59.688 38.462 0.00 0.00 0.00 4.69
3574 12021 7.464178 CGATTTTCTTATTTGTACTCCACGGAG 60.464 40.741 11.67 11.67 46.91 4.63
3575 12022 5.988310 TTCTTATTTGTACTCCACGGAGA 57.012 39.130 19.98 0.86 44.53 3.71
3576 12023 5.988310 TCTTATTTGTACTCCACGGAGAA 57.012 39.130 19.98 3.85 44.53 2.87
3577 12024 6.540438 TCTTATTTGTACTCCACGGAGAAT 57.460 37.500 19.98 10.79 44.53 2.40
3578 12025 6.942976 TCTTATTTGTACTCCACGGAGAATT 58.057 36.000 19.98 0.00 44.53 2.17
3579 12026 8.070034 TCTTATTTGTACTCCACGGAGAATTA 57.930 34.615 19.98 0.00 44.53 1.40
3580 12027 8.533657 TCTTATTTGTACTCCACGGAGAATTAA 58.466 33.333 19.98 9.24 44.53 1.40
3581 12028 9.158233 CTTATTTGTACTCCACGGAGAATTAAA 57.842 33.333 19.98 13.74 44.53 1.52
3582 12029 7.989416 ATTTGTACTCCACGGAGAATTAAAA 57.011 32.000 19.98 11.76 44.53 1.52
3583 12030 7.804843 TTTGTACTCCACGGAGAATTAAAAA 57.195 32.000 19.98 6.75 44.53 1.94
3604 12051 2.309136 AAATGAGACCAACCCAAGGG 57.691 50.000 2.91 2.91 42.03 3.95
3605 12052 0.251787 AATGAGACCAACCCAAGGGC 60.252 55.000 4.70 0.00 39.32 5.19
3607 12054 4.681624 AGACCAACCCAAGGGCTA 57.318 55.556 4.70 0.00 44.68 3.93
3608 12055 2.877150 AGACCAACCCAAGGGCTAA 58.123 52.632 4.70 0.00 44.68 3.09
3609 12056 1.382914 AGACCAACCCAAGGGCTAAT 58.617 50.000 4.70 0.00 44.68 1.73
3610 12057 1.285078 AGACCAACCCAAGGGCTAATC 59.715 52.381 4.70 0.00 44.68 1.75
3611 12058 0.335019 ACCAACCCAAGGGCTAATCC 59.665 55.000 4.70 0.00 39.32 3.01
3612 12059 0.631212 CCAACCCAAGGGCTAATCCT 59.369 55.000 4.70 0.00 39.32 3.24
3613 12060 1.410224 CCAACCCAAGGGCTAATCCTC 60.410 57.143 4.70 0.00 39.32 3.71
3614 12061 1.284785 CAACCCAAGGGCTAATCCTCA 59.715 52.381 4.70 0.00 39.32 3.86
3615 12062 1.912862 ACCCAAGGGCTAATCCTCAT 58.087 50.000 4.70 0.00 39.32 2.90
3616 12063 2.217776 ACCCAAGGGCTAATCCTCATT 58.782 47.619 4.70 0.00 39.32 2.57
3617 12064 2.091665 ACCCAAGGGCTAATCCTCATTG 60.092 50.000 4.70 0.00 39.32 2.82
3618 12065 2.590821 CCAAGGGCTAATCCTCATTGG 58.409 52.381 0.00 0.00 35.80 3.16
3619 12066 2.091665 CCAAGGGCTAATCCTCATTGGT 60.092 50.000 0.00 0.00 37.74 3.67
3620 12067 3.138283 CCAAGGGCTAATCCTCATTGGTA 59.862 47.826 0.00 0.00 37.74 3.25
3621 12068 4.202609 CCAAGGGCTAATCCTCATTGGTAT 60.203 45.833 0.00 0.00 37.74 2.73
3622 12069 5.388654 CAAGGGCTAATCCTCATTGGTATT 58.611 41.667 0.00 0.00 35.80 1.89
3623 12070 5.669798 AGGGCTAATCCTCATTGGTATTT 57.330 39.130 0.00 0.00 37.07 1.40
3624 12071 6.030727 AGGGCTAATCCTCATTGGTATTTT 57.969 37.500 0.00 0.00 37.07 1.82
3625 12072 6.443832 AGGGCTAATCCTCATTGGTATTTTT 58.556 36.000 0.00 0.00 37.07 1.94
3650 12097 3.487576 AAAAACTCCGTGAGCACCA 57.512 47.368 1.36 0.00 32.04 4.17
3651 12098 1.021968 AAAAACTCCGTGAGCACCAC 58.978 50.000 1.36 0.00 42.30 4.16
3662 12109 4.683334 GCACCACGCGTTCAAGCC 62.683 66.667 10.22 0.00 0.00 4.35
3663 12110 4.368808 CACCACGCGTTCAAGCCG 62.369 66.667 10.22 0.00 0.00 5.52
3669 12116 2.668550 GCGTTCAAGCCGGGACTT 60.669 61.111 2.18 0.00 0.00 3.01
3670 12117 1.375013 GCGTTCAAGCCGGGACTTA 60.375 57.895 2.18 0.00 0.00 2.24
3671 12118 0.952010 GCGTTCAAGCCGGGACTTAA 60.952 55.000 2.18 0.00 0.00 1.85
3672 12119 1.515081 CGTTCAAGCCGGGACTTAAA 58.485 50.000 2.18 0.00 0.00 1.52
3673 12120 1.196127 CGTTCAAGCCGGGACTTAAAC 59.804 52.381 2.18 0.27 0.00 2.01
3674 12121 2.501261 GTTCAAGCCGGGACTTAAACT 58.499 47.619 2.18 0.00 27.10 2.66
3675 12122 2.467566 TCAAGCCGGGACTTAAACTC 57.532 50.000 2.18 0.00 0.00 3.01
3676 12123 1.076332 CAAGCCGGGACTTAAACTCG 58.924 55.000 2.18 0.00 0.00 4.18
3681 12128 1.935933 CGGGACTTAAACTCGGATGG 58.064 55.000 0.00 0.00 0.00 3.51
3682 12129 1.472728 CGGGACTTAAACTCGGATGGG 60.473 57.143 0.00 0.00 0.00 4.00
3683 12130 1.664873 GGACTTAAACTCGGATGGGC 58.335 55.000 0.00 0.00 0.00 5.36
3684 12131 1.209747 GGACTTAAACTCGGATGGGCT 59.790 52.381 0.00 0.00 0.00 5.19
3685 12132 2.433239 GGACTTAAACTCGGATGGGCTA 59.567 50.000 0.00 0.00 0.00 3.93
3686 12133 3.492829 GGACTTAAACTCGGATGGGCTAG 60.493 52.174 0.00 0.00 0.00 3.42
3687 12134 2.158943 ACTTAAACTCGGATGGGCTAGC 60.159 50.000 6.04 6.04 0.00 3.42
3688 12135 1.491668 TAAACTCGGATGGGCTAGCA 58.508 50.000 18.24 0.00 0.00 3.49
3689 12136 0.179000 AAACTCGGATGGGCTAGCAG 59.821 55.000 18.24 5.72 0.00 4.24
3690 12137 2.030262 CTCGGATGGGCTAGCAGC 59.970 66.667 18.24 0.00 41.46 5.25
3691 12138 2.763710 TCGGATGGGCTAGCAGCA 60.764 61.111 18.24 0.00 44.75 4.41
3692 12139 2.190313 CGGATGGGCTAGCAGCAA 59.810 61.111 18.24 0.00 44.75 3.91
3693 12140 2.182842 CGGATGGGCTAGCAGCAAC 61.183 63.158 18.24 2.44 44.75 4.17
3694 12141 1.077501 GGATGGGCTAGCAGCAACA 60.078 57.895 18.24 7.37 44.75 3.33
3695 12142 0.466922 GGATGGGCTAGCAGCAACAT 60.467 55.000 18.24 11.82 44.75 2.71
3696 12143 0.950116 GATGGGCTAGCAGCAACATC 59.050 55.000 18.24 16.19 44.75 3.06
3697 12144 0.256752 ATGGGCTAGCAGCAACATCA 59.743 50.000 18.24 1.82 44.75 3.07
3698 12145 0.393402 TGGGCTAGCAGCAACATCAG 60.393 55.000 18.24 0.00 44.75 2.90
3699 12146 1.722636 GGGCTAGCAGCAACATCAGC 61.723 60.000 18.24 0.00 44.75 4.26
3700 12147 0.747283 GGCTAGCAGCAACATCAGCT 60.747 55.000 18.24 0.00 44.75 4.24
3705 12152 2.437449 AGCAACATCAGCTGCCCA 59.563 55.556 9.47 0.00 41.61 5.36
3706 12153 1.677966 AGCAACATCAGCTGCCCAG 60.678 57.895 9.47 0.73 41.61 4.45
3716 12163 2.752358 CTGCCCAGCCAACAGAGA 59.248 61.111 0.00 0.00 33.10 3.10
3728 12175 6.183360 CCAGCCAACAGAGAATTAGAGATTTG 60.183 42.308 0.00 0.00 0.00 2.32
3768 12215 5.253330 TCCTGTCTGGATCCAAAACATAAC 58.747 41.667 23.19 11.24 40.56 1.89
3795 12242 0.365523 CGTGTATGCCTTCGTCAACG 59.634 55.000 0.00 0.00 41.45 4.10
3804 12251 1.068474 CTTCGTCAACGTGGCCTTAG 58.932 55.000 3.32 0.00 40.80 2.18
3834 12281 9.884636 TGAATTAACATTATTCTTCTTCGGAGA 57.115 29.630 0.00 0.00 0.00 3.71
3838 12285 6.986904 ACATTATTCTTCTTCGGAGAAACC 57.013 37.500 7.73 0.00 45.90 3.27
3856 12303 6.824557 AGAAACCGTCATGTTTTACGTTATC 58.175 36.000 0.00 0.27 38.51 1.75
3864 12311 5.355630 TCATGTTTTACGTTATCCATGTGGG 59.644 40.000 13.88 0.00 33.27 4.61
3929 12380 8.225107 TCTTTTTCTTAAATGATAACGTCCACG 58.775 33.333 0.00 0.00 46.33 4.94
3960 12411 3.244284 ACTTATCAACAAGCCCACACGTA 60.244 43.478 0.00 0.00 0.00 3.57
3963 12414 0.865769 CAACAAGCCCACACGTACTC 59.134 55.000 0.00 0.00 0.00 2.59
3973 12424 0.455633 ACACGTACTCGATGCCGTTC 60.456 55.000 0.00 0.00 40.62 3.95
3976 12427 0.521867 CGTACTCGATGCCGTTCGAA 60.522 55.000 0.00 0.00 46.54 3.71
3986 12437 1.472082 TGCCGTTCGAATCATTTGCAT 59.528 42.857 0.00 0.00 0.00 3.96
3994 12445 6.675332 CGTTCGAATCATTTGCATGAATTTTG 59.325 34.615 0.00 0.00 42.93 2.44
4000 12451 6.474819 TCATTTGCATGAATTTTGAAGCAG 57.525 33.333 0.00 0.00 36.41 4.24
4003 12454 7.656542 TCATTTGCATGAATTTTGAAGCAGTTA 59.343 29.630 0.00 0.00 36.41 2.24
4010 12461 9.844790 CATGAATTTTGAAGCAGTTAACATCTA 57.155 29.630 8.61 0.00 0.00 1.98
4015 12466 4.832248 TGAAGCAGTTAACATCTAGGTGG 58.168 43.478 8.13 0.00 0.00 4.61
4046 12497 2.347114 CACCCAGCGTCATGTGGA 59.653 61.111 1.70 0.00 35.67 4.02
4047 12498 2.034879 CACCCAGCGTCATGTGGAC 61.035 63.158 1.70 0.00 43.36 4.02
4062 12513 5.293324 TCATGTGGACGTTATCATTTAGTGC 59.707 40.000 0.00 0.00 0.00 4.40
4080 12531 2.108976 CACACGTGTGGGTGCTCT 59.891 61.111 35.65 1.93 41.65 4.09
4082 12533 1.095228 CACACGTGTGGGTGCTCTTT 61.095 55.000 35.65 0.55 41.65 2.52
4091 12542 1.896660 GGTGCTCTTTGCCCGAACA 60.897 57.895 0.00 0.00 42.00 3.18
4098 12549 0.821711 CTTTGCCCGAACAACCCTCA 60.822 55.000 0.00 0.00 0.00 3.86
4113 12564 1.386533 CCTCATCTGAACATGTGGGC 58.613 55.000 0.00 0.00 34.87 5.36
4120 12571 2.037902 TCTGAACATGTGGGCGAAACTA 59.962 45.455 0.00 0.00 0.00 2.24
4125 12576 2.002586 CATGTGGGCGAAACTACTCTG 58.997 52.381 0.00 0.00 0.00 3.35
4134 12585 0.602905 AAACTACTCTGCGCCCACAC 60.603 55.000 4.18 0.00 0.00 3.82
4135 12586 2.507102 CTACTCTGCGCCCACACG 60.507 66.667 4.18 0.00 0.00 4.49
4145 12596 3.036084 CCCACACGACGCTCACAC 61.036 66.667 0.00 0.00 0.00 3.82
4153 12604 0.861866 CGACGCTCACACGGTGATAG 60.862 60.000 16.29 12.00 41.94 2.08
4163 12614 2.764010 ACACGGTGATAGATGGCAACTA 59.236 45.455 16.29 6.96 37.61 2.24
4177 12628 4.775236 TGGCAACTACATGTGTGCATATA 58.225 39.130 23.85 10.61 35.73 0.86
4178 12629 4.815846 TGGCAACTACATGTGTGCATATAG 59.184 41.667 23.85 9.20 37.92 1.31
4179 12630 4.214119 GGCAACTACATGTGTGCATATAGG 59.786 45.833 23.85 0.00 36.64 2.57
4180 12631 4.214119 GCAACTACATGTGTGCATATAGGG 59.786 45.833 20.00 3.07 36.64 3.53
4181 12632 4.008074 ACTACATGTGTGCATATAGGGC 57.992 45.455 9.11 0.00 36.64 5.19
4182 12633 3.648067 ACTACATGTGTGCATATAGGGCT 59.352 43.478 9.11 0.00 36.64 5.19
4183 12634 2.854963 ACATGTGTGCATATAGGGCTG 58.145 47.619 0.00 0.00 33.30 4.85
4184 12635 2.156917 CATGTGTGCATATAGGGCTGG 58.843 52.381 0.00 0.00 33.30 4.85
4185 12636 1.506025 TGTGTGCATATAGGGCTGGA 58.494 50.000 0.00 0.00 0.00 3.86
4186 12637 1.843206 TGTGTGCATATAGGGCTGGAA 59.157 47.619 0.00 0.00 0.00 3.53
4187 12638 2.442878 TGTGTGCATATAGGGCTGGAAT 59.557 45.455 0.00 0.00 0.00 3.01
4188 12639 3.117550 TGTGTGCATATAGGGCTGGAATT 60.118 43.478 0.00 0.00 0.00 2.17
4189 12640 3.503748 GTGTGCATATAGGGCTGGAATTC 59.496 47.826 0.00 0.00 0.00 2.17
4190 12641 2.744202 GTGCATATAGGGCTGGAATTCG 59.256 50.000 0.00 0.00 0.00 3.34
4191 12642 2.637382 TGCATATAGGGCTGGAATTCGA 59.363 45.455 0.00 0.00 0.00 3.71
4192 12643 3.265791 GCATATAGGGCTGGAATTCGAG 58.734 50.000 12.73 12.73 0.00 4.04
4193 12644 3.265791 CATATAGGGCTGGAATTCGAGC 58.734 50.000 28.50 28.50 45.32 5.03
4197 12648 3.711348 GCTGGAATTCGAGCCGAG 58.289 61.111 26.80 0.63 41.09 4.63
4198 12649 1.153549 GCTGGAATTCGAGCCGAGT 60.154 57.895 26.80 0.00 41.09 4.18
4199 12650 1.148759 GCTGGAATTCGAGCCGAGTC 61.149 60.000 26.80 3.39 41.09 3.36
4200 12651 0.867753 CTGGAATTCGAGCCGAGTCG 60.868 60.000 5.29 5.29 41.51 4.18
4206 12657 4.544689 CGAGCCGAGTCGAGCCAG 62.545 72.222 15.64 8.70 42.85 4.85
4207 12658 4.863925 GAGCCGAGTCGAGCCAGC 62.864 72.222 15.64 8.44 0.00 4.85
4209 12660 4.863925 GCCGAGTCGAGCCAGCTC 62.864 72.222 15.64 9.67 39.55 4.09
4226 12677 3.955101 CGGCTCGACCCGCTAGAG 61.955 72.222 6.17 0.00 42.03 2.43
4229 12680 3.027292 CTCGACCCGCTAGAGCTC 58.973 66.667 5.27 5.27 39.32 4.09
4230 12681 2.887889 CTCGACCCGCTAGAGCTCG 61.888 68.421 8.37 5.55 37.52 5.03
4231 12682 3.203412 CGACCCGCTAGAGCTCGT 61.203 66.667 8.37 0.00 39.32 4.18
4232 12683 2.762234 CGACCCGCTAGAGCTCGTT 61.762 63.158 8.37 0.00 39.32 3.85
4233 12684 1.511768 GACCCGCTAGAGCTCGTTT 59.488 57.895 8.37 0.00 39.32 3.60
4234 12685 0.525882 GACCCGCTAGAGCTCGTTTC 60.526 60.000 8.37 0.00 39.32 2.78
4235 12686 1.586564 CCCGCTAGAGCTCGTTTCG 60.587 63.158 8.37 10.47 39.32 3.46
4236 12687 1.136984 CCGCTAGAGCTCGTTTCGT 59.863 57.895 8.37 0.00 39.32 3.85
4237 12688 0.376152 CCGCTAGAGCTCGTTTCGTA 59.624 55.000 8.37 0.00 39.32 3.43
4238 12689 1.202110 CCGCTAGAGCTCGTTTCGTAA 60.202 52.381 8.37 0.00 39.32 3.18
4239 12690 2.512885 CGCTAGAGCTCGTTTCGTAAA 58.487 47.619 8.37 0.00 39.32 2.01
4240 12691 2.275767 CGCTAGAGCTCGTTTCGTAAAC 59.724 50.000 8.37 0.00 39.32 2.01
4259 12710 1.644913 GAGCTAGCTCGACTCGACC 59.355 63.158 28.04 3.68 33.06 4.79
4260 12711 0.812412 GAGCTAGCTCGACTCGACCT 60.812 60.000 28.04 0.00 33.06 3.85
4261 12712 1.092921 AGCTAGCTCGACTCGACCTG 61.093 60.000 12.68 0.00 0.00 4.00
4262 12713 1.370587 GCTAGCTCGACTCGACCTGT 61.371 60.000 7.70 0.00 0.00 4.00
4263 12714 1.088306 CTAGCTCGACTCGACCTGTT 58.912 55.000 6.54 0.00 0.00 3.16
4264 12715 2.277969 CTAGCTCGACTCGACCTGTTA 58.722 52.381 6.54 0.00 0.00 2.41
4265 12716 0.803740 AGCTCGACTCGACCTGTTAC 59.196 55.000 0.00 0.00 0.00 2.50
4266 12717 0.803740 GCTCGACTCGACCTGTTACT 59.196 55.000 0.00 0.00 0.00 2.24
4267 12718 2.005451 GCTCGACTCGACCTGTTACTA 58.995 52.381 0.00 0.00 0.00 1.82
4268 12719 2.613133 GCTCGACTCGACCTGTTACTAT 59.387 50.000 0.00 0.00 0.00 2.12
4269 12720 3.806521 GCTCGACTCGACCTGTTACTATA 59.193 47.826 0.00 0.00 0.00 1.31
4270 12721 4.272018 GCTCGACTCGACCTGTTACTATAA 59.728 45.833 0.00 0.00 0.00 0.98
4271 12722 5.725110 TCGACTCGACCTGTTACTATAAC 57.275 43.478 0.00 0.00 0.00 1.89
4272 12723 4.268644 TCGACTCGACCTGTTACTATAACG 59.731 45.833 0.00 0.00 0.00 3.18
4273 12724 4.268644 CGACTCGACCTGTTACTATAACGA 59.731 45.833 0.00 0.00 0.00 3.85
4274 12725 5.556006 CGACTCGACCTGTTACTATAACGAG 60.556 48.000 0.00 0.00 46.95 4.18
4275 12726 4.034975 ACTCGACCTGTTACTATAACGAGC 59.965 45.833 0.00 0.00 46.01 5.03
4276 12727 4.194640 TCGACCTGTTACTATAACGAGCT 58.805 43.478 0.00 0.00 0.00 4.09
4277 12728 4.272018 TCGACCTGTTACTATAACGAGCTC 59.728 45.833 2.73 2.73 0.00 4.09
4278 12729 4.034858 CGACCTGTTACTATAACGAGCTCA 59.965 45.833 15.40 0.00 0.00 4.26
4279 12730 5.448225 CGACCTGTTACTATAACGAGCTCAA 60.448 44.000 15.40 0.00 0.00 3.02
4280 12731 6.276832 ACCTGTTACTATAACGAGCTCAAA 57.723 37.500 15.40 0.00 0.00 2.69
4281 12732 6.098017 ACCTGTTACTATAACGAGCTCAAAC 58.902 40.000 15.40 5.16 0.00 2.93
4282 12733 5.519206 CCTGTTACTATAACGAGCTCAAACC 59.481 44.000 15.40 0.00 0.00 3.27
4283 12734 5.413499 TGTTACTATAACGAGCTCAAACCC 58.587 41.667 15.40 0.00 0.00 4.11
4284 12735 5.186409 TGTTACTATAACGAGCTCAAACCCT 59.814 40.000 15.40 0.00 0.00 4.34
4285 12736 6.377996 TGTTACTATAACGAGCTCAAACCCTA 59.622 38.462 15.40 0.00 0.00 3.53
4286 12737 5.517322 ACTATAACGAGCTCAAACCCTAG 57.483 43.478 15.40 8.67 0.00 3.02
4287 12738 5.198965 ACTATAACGAGCTCAAACCCTAGA 58.801 41.667 15.40 0.00 0.00 2.43
4288 12739 5.834204 ACTATAACGAGCTCAAACCCTAGAT 59.166 40.000 15.40 0.00 0.00 1.98
4289 12740 3.983044 AACGAGCTCAAACCCTAGATT 57.017 42.857 15.40 0.00 0.00 2.40
4290 12741 3.252974 ACGAGCTCAAACCCTAGATTG 57.747 47.619 15.40 0.00 0.00 2.67
4291 12742 2.093447 ACGAGCTCAAACCCTAGATTGG 60.093 50.000 15.40 0.00 0.00 3.16
4292 12743 2.293170 GAGCTCAAACCCTAGATTGGC 58.707 52.381 9.40 0.73 0.00 4.52
4293 12744 1.918957 AGCTCAAACCCTAGATTGGCT 59.081 47.619 0.00 2.86 32.16 4.75
4294 12745 2.092699 AGCTCAAACCCTAGATTGGCTC 60.093 50.000 0.00 0.00 31.73 4.70
4295 12746 2.555199 CTCAAACCCTAGATTGGCTCG 58.445 52.381 0.00 0.00 0.00 5.03
4296 12747 2.168521 CTCAAACCCTAGATTGGCTCGA 59.831 50.000 0.00 0.00 0.00 4.04
4297 12748 2.093658 TCAAACCCTAGATTGGCTCGAC 60.094 50.000 0.00 0.00 0.00 4.20
4298 12749 1.867363 AACCCTAGATTGGCTCGACT 58.133 50.000 0.00 0.00 0.00 4.18
4299 12750 2.750141 ACCCTAGATTGGCTCGACTA 57.250 50.000 0.00 0.00 0.00 2.59
4300 12751 2.588620 ACCCTAGATTGGCTCGACTAG 58.411 52.381 0.00 0.00 34.11 2.57
4301 12752 2.091775 ACCCTAGATTGGCTCGACTAGT 60.092 50.000 0.00 0.00 32.93 2.57
4302 12753 3.137913 ACCCTAGATTGGCTCGACTAGTA 59.862 47.826 0.00 0.00 32.93 1.82
4303 12754 4.202588 ACCCTAGATTGGCTCGACTAGTAT 60.203 45.833 0.00 0.00 32.93 2.12
4304 12755 5.013913 ACCCTAGATTGGCTCGACTAGTATA 59.986 44.000 0.00 0.00 32.93 1.47
4305 12756 5.944599 CCCTAGATTGGCTCGACTAGTATAA 59.055 44.000 0.00 0.00 32.93 0.98
4306 12757 6.127952 CCCTAGATTGGCTCGACTAGTATAAC 60.128 46.154 0.00 0.00 32.93 1.89
4307 12758 6.655848 CCTAGATTGGCTCGACTAGTATAACT 59.344 42.308 0.00 0.00 32.93 2.24
4308 12759 6.563222 AGATTGGCTCGACTAGTATAACTC 57.437 41.667 0.00 0.00 0.00 3.01
4309 12760 4.808077 TTGGCTCGACTAGTATAACTCG 57.192 45.455 0.00 0.00 0.00 4.18
4310 12761 2.547211 TGGCTCGACTAGTATAACTCGC 59.453 50.000 0.00 0.00 0.00 5.03
4311 12762 2.411289 GGCTCGACTAGTATAACTCGCG 60.411 54.545 0.00 0.00 0.00 5.87
4312 12763 2.474359 GCTCGACTAGTATAACTCGCGA 59.526 50.000 9.26 9.26 0.00 5.87
4313 12764 3.422085 GCTCGACTAGTATAACTCGCGAG 60.422 52.174 33.45 33.45 38.82 5.03
4314 12765 2.474359 TCGACTAGTATAACTCGCGAGC 59.526 50.000 34.83 18.58 0.00 5.03
4315 12766 2.475864 CGACTAGTATAACTCGCGAGCT 59.524 50.000 34.83 26.16 0.00 4.09
4316 12767 3.662195 CGACTAGTATAACTCGCGAGCTG 60.662 52.174 34.83 14.43 0.00 4.24
4317 12768 2.548904 ACTAGTATAACTCGCGAGCTGG 59.451 50.000 34.83 25.10 0.00 4.85
4318 12769 0.030908 AGTATAACTCGCGAGCTGGC 59.969 55.000 34.83 20.54 0.00 4.85
4319 12770 0.030908 GTATAACTCGCGAGCTGGCT 59.969 55.000 34.83 17.53 0.00 4.75
4320 12771 0.311165 TATAACTCGCGAGCTGGCTC 59.689 55.000 34.83 12.09 39.55 4.70
4443 12894 9.997482 TTGTAATTTTCTTGTAAAGTGTGAGTC 57.003 29.630 0.00 0.00 46.34 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.313249 TGATAGCCAAATGACTTCGCATG 59.687 43.478 0.00 0.00 0.00 4.06
11 12 4.285292 CATTGATAGCCAAATGACTTCGC 58.715 43.478 0.00 0.00 38.43 4.70
13 14 5.841957 ACCATTGATAGCCAAATGACTTC 57.158 39.130 0.00 0.00 38.43 3.01
81 82 1.625818 TGGCCACTGGTTTTGTGTTTT 59.374 42.857 0.00 0.00 33.92 2.43
146 147 4.508551 TCCAATGACCAAGCACATAGAT 57.491 40.909 0.00 0.00 0.00 1.98
194 195 3.422417 AGTAAGACGATGACATGACCG 57.578 47.619 0.00 0.00 0.00 4.79
272 273 7.384660 TCAACCATTAAGCAACAATGAATCAAC 59.615 33.333 6.53 0.00 35.77 3.18
550 551 1.474478 CGCCACTTCTAGCTTCTCTCA 59.526 52.381 0.00 0.00 0.00 3.27
551 552 1.202359 CCGCCACTTCTAGCTTCTCTC 60.202 57.143 0.00 0.00 0.00 3.20
552 553 0.820871 CCGCCACTTCTAGCTTCTCT 59.179 55.000 0.00 0.00 0.00 3.10
553 554 0.533032 ACCGCCACTTCTAGCTTCTC 59.467 55.000 0.00 0.00 0.00 2.87
591 592 4.101585 TCCTTTGCTATGATGTCCTCGAAT 59.898 41.667 0.00 0.00 0.00 3.34
606 607 0.323178 CACATGCCTCCTCCTTTGCT 60.323 55.000 0.00 0.00 0.00 3.91
631 632 9.554724 TTCTTTTCTTTGTTCATCATATTACGC 57.445 29.630 0.00 0.00 0.00 4.42
636 637 8.526147 CCACCTTCTTTTCTTTGTTCATCATAT 58.474 33.333 0.00 0.00 0.00 1.78
685 686 7.114811 TCGAGCTTAAAATTCTTGTTTTGCATC 59.885 33.333 0.00 0.00 33.62 3.91
697 698 5.012328 TCCTCTCCTCGAGCTTAAAATTC 57.988 43.478 6.99 0.00 38.49 2.17
799 803 5.950758 AATCGTTTTTACATGGTAGCACA 57.049 34.783 0.00 0.00 0.00 4.57
831 2359 1.434188 TGAGCTCCTTTTCACCCTCA 58.566 50.000 12.15 0.00 0.00 3.86
861 2389 5.427378 TCAATTGTCTCTGTCAGTGTCAAA 58.573 37.500 15.23 4.67 0.00 2.69
867 2395 4.818546 CCAAGTTCAATTGTCTCTGTCAGT 59.181 41.667 5.13 0.00 0.00 3.41
920 2448 3.006967 AGACACCGAATGTTCAGCTAGTT 59.993 43.478 0.00 0.00 43.56 2.24
1013 2541 0.608640 TCTGGGCTCCTTCTTTCGTC 59.391 55.000 0.00 0.00 0.00 4.20
1014 2542 0.321996 GTCTGGGCTCCTTCTTTCGT 59.678 55.000 0.00 0.00 0.00 3.85
1016 2544 2.568623 TTGTCTGGGCTCCTTCTTTC 57.431 50.000 0.00 0.00 0.00 2.62
1034 2562 0.178975 TCGCCAAATGTCCACCCTTT 60.179 50.000 0.00 0.00 0.00 3.11
1087 3506 2.126502 GGTTGTTGGCGGCGAATG 60.127 61.111 12.98 0.00 0.00 2.67
1173 3592 0.540830 TGGTTGATCGGTTTTGGGGG 60.541 55.000 0.00 0.00 0.00 5.40
1780 4224 2.202756 GCTAGCGAAGGTCGGGTG 60.203 66.667 0.00 0.00 40.84 4.61
1841 4293 4.135153 CGAGCCCCGACACCTCAG 62.135 72.222 0.00 0.00 41.76 3.35
2068 4521 2.029288 CTGCCGCGAGCTTCTTCAA 61.029 57.895 8.23 0.00 44.23 2.69
2755 11144 1.913951 ATGCGCTGGATGAACTGGGA 61.914 55.000 9.73 0.00 0.00 4.37
2985 11374 2.232452 CAGGTTCCAGAAGACGATCTGT 59.768 50.000 13.62 0.00 44.32 3.41
3075 11464 3.080319 GAGGAAGAGCTTGAGCATGTTT 58.920 45.455 5.70 0.00 45.16 2.83
3125 11514 7.852971 TCTTCTTCTTCGTTTTCCTTTTGTA 57.147 32.000 0.00 0.00 0.00 2.41
3129 11518 7.551617 TGTAGTTCTTCTTCTTCGTTTTCCTTT 59.448 33.333 0.00 0.00 0.00 3.11
3134 11523 8.182227 CCTTTTGTAGTTCTTCTTCTTCGTTTT 58.818 33.333 0.00 0.00 0.00 2.43
3136 11525 6.260271 CCCTTTTGTAGTTCTTCTTCTTCGTT 59.740 38.462 0.00 0.00 0.00 3.85
3138 11527 5.989777 TCCCTTTTGTAGTTCTTCTTCTTCG 59.010 40.000 0.00 0.00 0.00 3.79
3193 11582 6.491403 TCTTTTCCCTTCTTCAATTCCTTCTG 59.509 38.462 0.00 0.00 0.00 3.02
3194 11583 6.614657 TCTTTTCCCTTCTTCAATTCCTTCT 58.385 36.000 0.00 0.00 0.00 2.85
3195 11584 6.901081 TCTTTTCCCTTCTTCAATTCCTTC 57.099 37.500 0.00 0.00 0.00 3.46
3196 11585 6.841229 ACTTCTTTTCCCTTCTTCAATTCCTT 59.159 34.615 0.00 0.00 0.00 3.36
3197 11586 6.377080 ACTTCTTTTCCCTTCTTCAATTCCT 58.623 36.000 0.00 0.00 0.00 3.36
3198 11587 6.265422 TGACTTCTTTTCCCTTCTTCAATTCC 59.735 38.462 0.00 0.00 0.00 3.01
3210 11599 2.484264 CGTCATGGTGACTTCTTTTCCC 59.516 50.000 8.30 0.00 44.85 3.97
3274 11663 0.166161 TCGAAGACGACGAGCTTCTG 59.834 55.000 22.67 18.12 43.81 3.02
3301 11690 2.928757 GAGAGAGCACGTAGTAGTCGAA 59.071 50.000 0.00 0.00 41.61 3.71
3302 11691 2.094338 TGAGAGAGCACGTAGTAGTCGA 60.094 50.000 0.00 0.00 41.61 4.20
3303 11692 2.269172 TGAGAGAGCACGTAGTAGTCG 58.731 52.381 0.00 0.00 41.61 4.18
3304 11693 4.886247 ATTGAGAGAGCACGTAGTAGTC 57.114 45.455 0.00 0.00 41.61 2.59
3305 11694 6.542735 TGATTATTGAGAGAGCACGTAGTAGT 59.457 38.462 0.00 0.00 41.61 2.73
3306 11695 6.960468 TGATTATTGAGAGAGCACGTAGTAG 58.040 40.000 0.00 0.00 41.61 2.57
3307 11696 6.937436 TGATTATTGAGAGAGCACGTAGTA 57.063 37.500 0.00 0.00 41.61 1.82
3310 11699 5.915196 CGATTGATTATTGAGAGAGCACGTA 59.085 40.000 0.00 0.00 0.00 3.57
3311 11700 4.742167 CGATTGATTATTGAGAGAGCACGT 59.258 41.667 0.00 0.00 0.00 4.49
3322 11715 4.816385 ACTAGCACACCCGATTGATTATTG 59.184 41.667 0.00 0.00 0.00 1.90
3395 11802 5.793026 AAGCAAAATCGCAGTTTCAAAAA 57.207 30.435 0.00 0.00 0.00 1.94
3396 11803 5.793026 AAAGCAAAATCGCAGTTTCAAAA 57.207 30.435 0.00 0.00 0.00 2.44
3397 11804 5.499971 CGAAAAGCAAAATCGCAGTTTCAAA 60.500 36.000 0.00 0.00 37.73 2.69
3398 11805 4.026968 CGAAAAGCAAAATCGCAGTTTCAA 60.027 37.500 0.00 0.00 37.73 2.69
3399 11806 3.485378 CGAAAAGCAAAATCGCAGTTTCA 59.515 39.130 0.00 0.00 37.73 2.69
3400 11807 3.728718 TCGAAAAGCAAAATCGCAGTTTC 59.271 39.130 0.00 0.00 36.01 2.78
3401 11808 3.701241 TCGAAAAGCAAAATCGCAGTTT 58.299 36.364 0.00 0.00 36.56 2.66
3402 11809 3.347958 TCGAAAAGCAAAATCGCAGTT 57.652 38.095 0.00 0.00 36.56 3.16
3403 11810 3.042887 GTTCGAAAAGCAAAATCGCAGT 58.957 40.909 0.00 0.00 36.56 4.40
3404 11811 2.405025 GGTTCGAAAAGCAAAATCGCAG 59.595 45.455 0.00 0.00 36.56 5.18
3405 11812 2.034053 AGGTTCGAAAAGCAAAATCGCA 59.966 40.909 0.00 0.00 36.56 5.10
3406 11813 2.661594 AGGTTCGAAAAGCAAAATCGC 58.338 42.857 0.00 0.00 36.56 4.58
3407 11814 3.846335 GCTAGGTTCGAAAAGCAAAATCG 59.154 43.478 18.45 0.00 35.29 3.34
3408 11815 5.048153 AGCTAGGTTCGAAAAGCAAAATC 57.952 39.130 22.83 0.66 37.44 2.17
3409 11816 5.705905 ACTAGCTAGGTTCGAAAAGCAAAAT 59.294 36.000 24.35 10.37 37.44 1.82
3410 11817 5.061179 ACTAGCTAGGTTCGAAAAGCAAAA 58.939 37.500 24.35 11.71 37.44 2.44
3411 11818 4.638304 ACTAGCTAGGTTCGAAAAGCAAA 58.362 39.130 24.35 13.46 37.44 3.68
3412 11819 4.267349 ACTAGCTAGGTTCGAAAAGCAA 57.733 40.909 24.35 0.48 37.44 3.91
3413 11820 3.955650 ACTAGCTAGGTTCGAAAAGCA 57.044 42.857 24.35 12.40 37.44 3.91
3414 11821 4.268167 GCTAACTAGCTAGGTTCGAAAAGC 59.732 45.833 24.35 17.83 45.62 3.51
3415 11822 5.952698 GCTAACTAGCTAGGTTCGAAAAG 57.047 43.478 24.35 12.13 45.62 2.27
3435 11842 9.935241 ACATGACAGAATATTTATTCGATAGCT 57.065 29.630 0.00 0.00 45.10 3.32
3450 11874 3.431346 CCGTCCATGAGACATGACAGAAT 60.431 47.826 12.46 0.00 46.69 2.40
3451 11875 2.094026 CCGTCCATGAGACATGACAGAA 60.094 50.000 12.46 0.00 46.69 3.02
3501 11925 9.736023 AAAATTTCAGCGGAATGATAGAATTAC 57.264 29.630 0.00 0.00 31.93 1.89
3515 11962 2.064387 CGCAGCAAAATTTCAGCGG 58.936 52.632 14.67 12.46 41.30 5.52
3532 11979 2.825726 ATCGCACAGACCACAGAGCG 62.826 60.000 0.00 0.00 41.74 5.03
3549 11996 7.548075 TCTCCGTGGAGTACAAATAAGAAAATC 59.452 37.037 15.28 0.00 42.49 2.17
3554 12001 5.988310 TTCTCCGTGGAGTACAAATAAGA 57.012 39.130 15.28 0.00 42.49 2.10
3555 12002 8.712285 TTAATTCTCCGTGGAGTACAAATAAG 57.288 34.615 15.28 0.00 42.49 1.73
3557 12004 9.504708 TTTTTAATTCTCCGTGGAGTACAAATA 57.495 29.630 15.28 3.98 42.49 1.40
3583 12030 2.972021 CCCTTGGGTTGGTCTCATTTTT 59.028 45.455 0.00 0.00 0.00 1.94
3584 12031 2.608623 CCCTTGGGTTGGTCTCATTTT 58.391 47.619 0.00 0.00 0.00 1.82
3585 12032 1.827245 GCCCTTGGGTTGGTCTCATTT 60.827 52.381 7.61 0.00 0.00 2.32
3586 12033 0.251787 GCCCTTGGGTTGGTCTCATT 60.252 55.000 7.61 0.00 0.00 2.57
3587 12034 1.142688 AGCCCTTGGGTTGGTCTCAT 61.143 55.000 7.61 0.00 0.00 2.90
3588 12035 0.474854 TAGCCCTTGGGTTGGTCTCA 60.475 55.000 7.61 0.00 34.28 3.27
3589 12036 0.696501 TTAGCCCTTGGGTTGGTCTC 59.303 55.000 7.61 0.00 34.28 3.36
3590 12037 1.285078 GATTAGCCCTTGGGTTGGTCT 59.715 52.381 7.61 0.00 34.28 3.85
3591 12038 1.685180 GGATTAGCCCTTGGGTTGGTC 60.685 57.143 7.61 4.38 34.28 4.02
3592 12039 0.335019 GGATTAGCCCTTGGGTTGGT 59.665 55.000 7.61 0.00 34.28 3.67
3593 12040 0.631212 AGGATTAGCCCTTGGGTTGG 59.369 55.000 7.61 0.00 37.37 3.77
3594 12041 1.284785 TGAGGATTAGCCCTTGGGTTG 59.715 52.381 7.61 0.00 36.49 3.77
3595 12042 1.681229 TGAGGATTAGCCCTTGGGTT 58.319 50.000 7.61 3.76 36.49 4.11
3596 12043 1.912862 ATGAGGATTAGCCCTTGGGT 58.087 50.000 7.61 0.00 36.49 4.51
3597 12044 2.590821 CAATGAGGATTAGCCCTTGGG 58.409 52.381 0.32 0.32 36.49 4.12
3598 12045 2.091665 ACCAATGAGGATTAGCCCTTGG 60.092 50.000 10.31 10.31 41.22 3.61
3599 12046 3.303351 ACCAATGAGGATTAGCCCTTG 57.697 47.619 0.00 0.00 41.22 3.61
3600 12047 5.669798 AATACCAATGAGGATTAGCCCTT 57.330 39.130 0.00 0.00 41.22 3.95
3601 12048 5.669798 AAATACCAATGAGGATTAGCCCT 57.330 39.130 0.00 0.00 41.22 5.19
3602 12049 6.731292 AAAAATACCAATGAGGATTAGCCC 57.269 37.500 0.00 0.00 41.22 5.19
3632 12079 1.021968 GTGGTGCTCACGGAGTTTTT 58.978 50.000 3.38 0.00 41.61 1.94
3633 12080 2.702847 GTGGTGCTCACGGAGTTTT 58.297 52.632 3.38 0.00 41.61 2.43
3634 12081 4.456806 GTGGTGCTCACGGAGTTT 57.543 55.556 3.38 0.00 41.61 2.66
3641 12088 2.430080 CTTGAACGCGTGGTGCTCAC 62.430 60.000 14.98 0.00 43.27 3.51
3642 12089 2.202946 TTGAACGCGTGGTGCTCA 60.203 55.556 14.98 9.94 43.27 4.26
3643 12090 2.551270 CTTGAACGCGTGGTGCTC 59.449 61.111 14.98 6.74 43.27 4.26
3644 12091 3.649986 GCTTGAACGCGTGGTGCT 61.650 61.111 14.98 0.00 43.27 4.40
3645 12092 4.683334 GGCTTGAACGCGTGGTGC 62.683 66.667 14.98 15.13 41.47 5.01
3646 12093 4.368808 CGGCTTGAACGCGTGGTG 62.369 66.667 14.98 4.86 0.00 4.17
3652 12099 0.952010 TTAAGTCCCGGCTTGAACGC 60.952 55.000 0.00 0.00 0.00 4.84
3653 12100 1.196127 GTTTAAGTCCCGGCTTGAACG 59.804 52.381 11.74 0.00 36.01 3.95
3654 12101 2.483106 GAGTTTAAGTCCCGGCTTGAAC 59.517 50.000 16.64 16.64 41.98 3.18
3655 12102 2.774687 GAGTTTAAGTCCCGGCTTGAA 58.225 47.619 0.00 0.00 0.00 2.69
3656 12103 1.337447 CGAGTTTAAGTCCCGGCTTGA 60.337 52.381 0.00 0.00 0.00 3.02
3657 12104 1.076332 CGAGTTTAAGTCCCGGCTTG 58.924 55.000 0.00 0.00 0.00 4.01
3658 12105 0.036671 CCGAGTTTAAGTCCCGGCTT 60.037 55.000 0.00 0.00 33.47 4.35
3659 12106 0.901580 TCCGAGTTTAAGTCCCGGCT 60.902 55.000 0.00 0.00 39.96 5.52
3660 12107 0.177373 ATCCGAGTTTAAGTCCCGGC 59.823 55.000 0.00 0.00 39.96 6.13
3661 12108 1.472728 CCATCCGAGTTTAAGTCCCGG 60.473 57.143 0.00 0.00 41.36 5.73
3662 12109 1.472728 CCCATCCGAGTTTAAGTCCCG 60.473 57.143 0.00 0.00 0.00 5.14
3663 12110 1.746171 GCCCATCCGAGTTTAAGTCCC 60.746 57.143 0.00 0.00 0.00 4.46
3664 12111 1.209747 AGCCCATCCGAGTTTAAGTCC 59.790 52.381 0.00 0.00 0.00 3.85
3665 12112 2.693267 AGCCCATCCGAGTTTAAGTC 57.307 50.000 0.00 0.00 0.00 3.01
3666 12113 2.158943 GCTAGCCCATCCGAGTTTAAGT 60.159 50.000 2.29 0.00 0.00 2.24
3667 12114 2.158957 TGCTAGCCCATCCGAGTTTAAG 60.159 50.000 13.29 0.00 0.00 1.85
3668 12115 1.834896 TGCTAGCCCATCCGAGTTTAA 59.165 47.619 13.29 0.00 0.00 1.52
3669 12116 1.412710 CTGCTAGCCCATCCGAGTTTA 59.587 52.381 13.29 0.00 0.00 2.01
3670 12117 0.179000 CTGCTAGCCCATCCGAGTTT 59.821 55.000 13.29 0.00 0.00 2.66
3671 12118 1.826024 CTGCTAGCCCATCCGAGTT 59.174 57.895 13.29 0.00 0.00 3.01
3672 12119 2.801631 GCTGCTAGCCCATCCGAGT 61.802 63.158 13.29 0.00 34.48 4.18
3673 12120 2.030262 GCTGCTAGCCCATCCGAG 59.970 66.667 13.29 1.59 34.48 4.63
3674 12121 2.366393 TTGCTGCTAGCCCATCCGA 61.366 57.895 13.29 0.00 41.51 4.55
3675 12122 2.182842 GTTGCTGCTAGCCCATCCG 61.183 63.158 13.29 0.00 41.51 4.18
3676 12123 0.466922 ATGTTGCTGCTAGCCCATCC 60.467 55.000 13.29 4.34 41.51 3.51
3677 12124 0.950116 GATGTTGCTGCTAGCCCATC 59.050 55.000 13.29 11.54 41.51 3.51
3678 12125 0.256752 TGATGTTGCTGCTAGCCCAT 59.743 50.000 13.29 6.46 41.51 4.00
3679 12126 0.393402 CTGATGTTGCTGCTAGCCCA 60.393 55.000 13.29 6.67 41.51 5.36
3680 12127 1.722636 GCTGATGTTGCTGCTAGCCC 61.723 60.000 13.29 3.74 41.51 5.19
3681 12128 0.747283 AGCTGATGTTGCTGCTAGCC 60.747 55.000 13.29 0.00 41.51 3.93
3682 12129 2.777969 AGCTGATGTTGCTGCTAGC 58.222 52.632 8.10 8.10 40.62 3.42
3699 12146 0.323178 ATTCTCTGTTGGCTGGGCAG 60.323 55.000 0.00 0.00 0.00 4.85
3700 12147 0.112995 AATTCTCTGTTGGCTGGGCA 59.887 50.000 0.00 0.00 0.00 5.36
3701 12148 2.019984 CTAATTCTCTGTTGGCTGGGC 58.980 52.381 0.00 0.00 0.00 5.36
3702 12149 3.198635 TCTCTAATTCTCTGTTGGCTGGG 59.801 47.826 0.00 0.00 0.00 4.45
3703 12150 4.478206 TCTCTAATTCTCTGTTGGCTGG 57.522 45.455 0.00 0.00 0.00 4.85
3704 12151 6.596888 TCAAATCTCTAATTCTCTGTTGGCTG 59.403 38.462 0.00 0.00 0.00 4.85
3705 12152 6.715280 TCAAATCTCTAATTCTCTGTTGGCT 58.285 36.000 0.00 0.00 0.00 4.75
3706 12153 6.992063 TCAAATCTCTAATTCTCTGTTGGC 57.008 37.500 0.00 0.00 0.00 4.52
3707 12154 8.728337 TCATCAAATCTCTAATTCTCTGTTGG 57.272 34.615 0.00 0.00 0.00 3.77
3728 12175 6.585702 CAGACAGGAATCGTATCAAGATCATC 59.414 42.308 0.00 0.00 0.00 2.92
3734 12181 4.655762 TCCAGACAGGAATCGTATCAAG 57.344 45.455 0.00 0.00 45.65 3.02
3768 12215 5.918576 TGACGAAGGCATACACGATTTATAG 59.081 40.000 0.00 0.00 0.00 1.31
3830 12277 3.495753 ACGTAAAACATGACGGTTTCTCC 59.504 43.478 0.00 0.00 43.32 3.71
3834 12281 5.469421 TGGATAACGTAAAACATGACGGTTT 59.531 36.000 0.00 0.00 43.32 3.27
3837 12284 5.064198 ACATGGATAACGTAAAACATGACGG 59.936 40.000 22.04 4.42 43.32 4.79
3838 12285 5.957220 CACATGGATAACGTAAAACATGACG 59.043 40.000 22.04 0.56 44.57 4.35
3850 12297 2.158682 TCCCATTCCCACATGGATAACG 60.159 50.000 0.00 0.00 46.18 3.18
3856 12303 0.040942 TGGTTCCCATTCCCACATGG 59.959 55.000 0.00 0.00 43.26 3.66
3929 12380 0.871722 TGTTGATAAGTGCCACACGC 59.128 50.000 0.00 0.00 39.64 5.34
3963 12414 2.365948 CAAATGATTCGAACGGCATCG 58.634 47.619 0.00 3.51 44.04 3.84
3973 12424 6.681178 GCTTCAAAATTCATGCAAATGATTCG 59.319 34.615 0.00 0.00 0.00 3.34
3976 12427 6.653320 ACTGCTTCAAAATTCATGCAAATGAT 59.347 30.769 0.00 0.00 0.00 2.45
3986 12437 8.514594 CCTAGATGTTAACTGCTTCAAAATTCA 58.485 33.333 7.22 0.00 0.00 2.57
3994 12445 5.086104 TCCACCTAGATGTTAACTGCTTC 57.914 43.478 7.22 0.00 0.00 3.86
4000 12451 3.451178 TGGCTCTCCACCTAGATGTTAAC 59.549 47.826 0.00 0.00 37.47 2.01
4003 12454 2.254152 TGGCTCTCCACCTAGATGTT 57.746 50.000 0.00 0.00 37.47 2.71
4010 12461 0.543749 GCTTACATGGCTCTCCACCT 59.456 55.000 0.00 0.00 46.92 4.00
4015 12466 0.253044 TGGGTGCTTACATGGCTCTC 59.747 55.000 0.00 0.00 0.00 3.20
4040 12491 4.574828 GGCACTAAATGATAACGTCCACAT 59.425 41.667 0.00 0.00 0.00 3.21
4046 12497 3.369756 CGTGTGGCACTAAATGATAACGT 59.630 43.478 19.83 0.00 31.34 3.99
4047 12498 3.369756 ACGTGTGGCACTAAATGATAACG 59.630 43.478 19.83 17.84 31.34 3.18
4053 12504 2.314561 CACACGTGTGGCACTAAATG 57.685 50.000 35.65 10.67 42.10 2.32
4080 12531 0.178975 ATGAGGGTTGTTCGGGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
4082 12533 1.002624 GATGAGGGTTGTTCGGGCA 60.003 57.895 0.00 0.00 0.00 5.36
4091 12542 2.291153 CCCACATGTTCAGATGAGGGTT 60.291 50.000 10.33 0.00 44.88 4.11
4098 12549 1.812571 GTTTCGCCCACATGTTCAGAT 59.187 47.619 0.00 0.00 0.00 2.90
4113 12564 1.080093 TGGGCGCAGAGTAGTTTCG 60.080 57.895 10.83 0.00 0.00 3.46
4120 12571 4.664677 GTCGTGTGGGCGCAGAGT 62.665 66.667 10.83 0.00 0.00 3.24
4134 12585 0.861866 CTATCACCGTGTGAGCGTCG 60.862 60.000 11.50 0.00 46.04 5.12
4135 12586 0.450583 TCTATCACCGTGTGAGCGTC 59.549 55.000 11.50 0.00 46.04 5.19
4145 12596 3.452755 TGTAGTTGCCATCTATCACCG 57.547 47.619 0.00 0.00 0.00 4.94
4153 12604 1.811965 TGCACACATGTAGTTGCCATC 59.188 47.619 18.59 0.00 35.07 3.51
4163 12614 2.487805 CCAGCCCTATATGCACACATGT 60.488 50.000 0.00 0.00 37.04 3.21
4180 12631 1.148759 GACTCGGCTCGAATTCCAGC 61.149 60.000 15.86 15.86 34.74 4.85
4181 12632 0.867753 CGACTCGGCTCGAATTCCAG 60.868 60.000 0.00 0.00 34.74 3.86
4182 12633 1.138883 CGACTCGGCTCGAATTCCA 59.861 57.895 0.00 0.00 34.74 3.53
4183 12634 0.592754 CTCGACTCGGCTCGAATTCC 60.593 60.000 0.00 0.00 42.00 3.01
4184 12635 1.203600 GCTCGACTCGGCTCGAATTC 61.204 60.000 0.00 0.00 42.00 2.17
4185 12636 1.226717 GCTCGACTCGGCTCGAATT 60.227 57.895 0.00 0.00 42.00 2.17
4186 12637 2.409651 GCTCGACTCGGCTCGAAT 59.590 61.111 0.00 0.00 42.00 3.34
4187 12638 3.812019 GGCTCGACTCGGCTCGAA 61.812 66.667 10.47 0.00 42.00 3.71
4189 12640 4.544689 CTGGCTCGACTCGGCTCG 62.545 72.222 10.47 0.00 34.83 5.03
4190 12641 4.863925 GCTGGCTCGACTCGGCTC 62.864 72.222 10.47 3.89 32.87 4.70
4192 12643 4.863925 GAGCTGGCTCGACTCGGC 62.864 72.222 6.84 6.06 33.06 5.54
4209 12660 3.955101 CTCTAGCGGGTCGAGCCG 61.955 72.222 43.01 43.01 38.44 5.52
4210 12661 4.273257 GCTCTAGCGGGTCGAGCC 62.273 72.222 23.85 23.85 43.22 4.70
4220 12671 3.885254 GTTTACGAAACGAGCTCTAGC 57.115 47.619 12.85 0.00 42.49 3.42
4248 12699 5.556006 CGTTATAGTAACAGGTCGAGTCGAG 60.556 48.000 17.12 7.13 36.23 4.04
4249 12700 4.268644 CGTTATAGTAACAGGTCGAGTCGA 59.731 45.833 12.09 12.09 0.00 4.20
4250 12701 4.268644 TCGTTATAGTAACAGGTCGAGTCG 59.731 45.833 6.09 6.09 0.00 4.18
4251 12702 5.725110 TCGTTATAGTAACAGGTCGAGTC 57.275 43.478 0.00 0.00 0.00 3.36
4252 12703 4.034975 GCTCGTTATAGTAACAGGTCGAGT 59.965 45.833 11.64 0.00 43.17 4.18
4253 12704 4.272991 AGCTCGTTATAGTAACAGGTCGAG 59.727 45.833 0.00 0.00 43.78 4.04
4254 12705 4.194640 AGCTCGTTATAGTAACAGGTCGA 58.805 43.478 1.37 0.00 0.00 4.20
4255 12706 4.034858 TGAGCTCGTTATAGTAACAGGTCG 59.965 45.833 9.64 0.00 33.14 4.79
4256 12707 5.496133 TGAGCTCGTTATAGTAACAGGTC 57.504 43.478 9.64 15.97 32.16 3.85
4257 12708 5.909621 TTGAGCTCGTTATAGTAACAGGT 57.090 39.130 9.64 3.33 0.00 4.00
4258 12709 5.519206 GGTTTGAGCTCGTTATAGTAACAGG 59.481 44.000 9.64 0.00 0.00 4.00
4259 12710 5.519206 GGGTTTGAGCTCGTTATAGTAACAG 59.481 44.000 9.64 0.00 0.00 3.16
4260 12711 5.186409 AGGGTTTGAGCTCGTTATAGTAACA 59.814 40.000 9.64 0.00 0.00 2.41
4261 12712 5.658468 AGGGTTTGAGCTCGTTATAGTAAC 58.342 41.667 9.64 3.32 0.00 2.50
4262 12713 5.927281 AGGGTTTGAGCTCGTTATAGTAA 57.073 39.130 9.64 0.00 0.00 2.24
4263 12714 6.359804 TCTAGGGTTTGAGCTCGTTATAGTA 58.640 40.000 9.64 0.00 0.00 1.82
4264 12715 5.198965 TCTAGGGTTTGAGCTCGTTATAGT 58.801 41.667 9.64 0.00 0.00 2.12
4265 12716 5.769484 TCTAGGGTTTGAGCTCGTTATAG 57.231 43.478 9.64 6.69 0.00 1.31
4266 12717 6.462487 CCAATCTAGGGTTTGAGCTCGTTATA 60.462 42.308 9.64 0.00 0.00 0.98
4267 12718 5.360591 CAATCTAGGGTTTGAGCTCGTTAT 58.639 41.667 9.64 0.00 0.00 1.89
4268 12719 4.382685 CCAATCTAGGGTTTGAGCTCGTTA 60.383 45.833 9.64 0.00 0.00 3.18
4269 12720 3.600388 CAATCTAGGGTTTGAGCTCGTT 58.400 45.455 9.64 0.00 0.00 3.85
4270 12721 2.093447 CCAATCTAGGGTTTGAGCTCGT 60.093 50.000 9.64 0.00 0.00 4.18
4271 12722 2.555199 CCAATCTAGGGTTTGAGCTCG 58.445 52.381 9.64 0.00 0.00 5.03
4272 12723 2.092699 AGCCAATCTAGGGTTTGAGCTC 60.093 50.000 6.82 6.82 35.44 4.09
4273 12724 1.918957 AGCCAATCTAGGGTTTGAGCT 59.081 47.619 0.00 0.00 35.44 4.09
4274 12725 2.293170 GAGCCAATCTAGGGTTTGAGC 58.707 52.381 0.00 0.00 40.02 4.26
4275 12726 2.168521 TCGAGCCAATCTAGGGTTTGAG 59.831 50.000 0.00 0.00 40.02 3.02
4276 12727 2.093658 GTCGAGCCAATCTAGGGTTTGA 60.094 50.000 0.00 0.00 40.02 2.69
4277 12728 2.093447 AGTCGAGCCAATCTAGGGTTTG 60.093 50.000 0.00 0.00 40.02 2.93
4278 12729 2.188817 AGTCGAGCCAATCTAGGGTTT 58.811 47.619 0.00 0.00 40.02 3.27
4279 12730 1.867363 AGTCGAGCCAATCTAGGGTT 58.133 50.000 0.00 0.00 40.02 4.11
4280 12731 2.091775 ACTAGTCGAGCCAATCTAGGGT 60.092 50.000 9.51 0.00 43.27 4.34
4281 12732 2.588620 ACTAGTCGAGCCAATCTAGGG 58.411 52.381 9.51 0.00 35.56 3.53
4282 12733 6.655848 AGTTATACTAGTCGAGCCAATCTAGG 59.344 42.308 0.00 0.00 35.56 3.02
4283 12734 7.412129 CGAGTTATACTAGTCGAGCCAATCTAG 60.412 44.444 0.00 4.45 42.19 2.43
4284 12735 6.368243 CGAGTTATACTAGTCGAGCCAATCTA 59.632 42.308 0.00 0.00 42.19 1.98
4285 12736 5.179742 CGAGTTATACTAGTCGAGCCAATCT 59.820 44.000 0.00 0.00 42.19 2.40
4286 12737 5.383958 CGAGTTATACTAGTCGAGCCAATC 58.616 45.833 0.00 0.00 42.19 2.67
4287 12738 4.320348 GCGAGTTATACTAGTCGAGCCAAT 60.320 45.833 0.00 0.00 42.19 3.16
4288 12739 3.003068 GCGAGTTATACTAGTCGAGCCAA 59.997 47.826 0.00 0.00 42.19 4.52
4289 12740 2.547211 GCGAGTTATACTAGTCGAGCCA 59.453 50.000 0.00 0.00 42.19 4.75
4290 12741 2.411289 CGCGAGTTATACTAGTCGAGCC 60.411 54.545 0.00 0.00 42.19 4.70
4291 12742 2.474359 TCGCGAGTTATACTAGTCGAGC 59.526 50.000 3.71 0.00 42.19 5.03
4292 12743 3.422085 GCTCGCGAGTTATACTAGTCGAG 60.422 52.174 34.46 17.32 43.04 4.04
4293 12744 2.474359 GCTCGCGAGTTATACTAGTCGA 59.526 50.000 34.46 0.00 42.19 4.20
4294 12745 2.475864 AGCTCGCGAGTTATACTAGTCG 59.524 50.000 34.46 8.36 42.43 4.18
4295 12746 3.364167 CCAGCTCGCGAGTTATACTAGTC 60.364 52.174 34.46 15.44 0.00 2.59
4296 12747 2.548904 CCAGCTCGCGAGTTATACTAGT 59.451 50.000 34.46 0.00 0.00 2.57
4297 12748 2.666069 GCCAGCTCGCGAGTTATACTAG 60.666 54.545 34.46 17.83 0.00 2.57
4298 12749 1.266175 GCCAGCTCGCGAGTTATACTA 59.734 52.381 34.46 0.00 0.00 1.82
4299 12750 0.030908 GCCAGCTCGCGAGTTATACT 59.969 55.000 34.46 20.93 0.00 2.12
4300 12751 0.030908 AGCCAGCTCGCGAGTTATAC 59.969 55.000 34.46 21.22 0.00 1.47
4301 12752 0.311165 GAGCCAGCTCGCGAGTTATA 59.689 55.000 34.46 0.00 33.06 0.98
4302 12753 1.066587 GAGCCAGCTCGCGAGTTAT 59.933 57.895 34.46 19.21 33.06 1.89
4303 12754 2.490217 GAGCCAGCTCGCGAGTTA 59.510 61.111 34.46 0.73 33.06 2.24
4417 12868 9.997482 GACTCACACTTTACAAGAAAATTACAA 57.003 29.630 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.