AutoCloner

Multiple sequence alignment - TraesCS7B01G409700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G409700	chr7B	100.000	3059	0	0	1	3059	678830318	678833376	0.000000e+00	5650.0
1	TraesCS7B01G409700	chr7A	94.834	2381	95	18	702	3059	691537117	691534742	0.000000e+00	3690.0
2	TraesCS7B01G409700	chr7A	87.251	502	57	4	1835	2335	691533187	691532692	1.590000e-157	566.0
3	TraesCS7B01G409700	chr7A	86.494	385	39	6	1952	2335	691617488	691617860	7.890000e-111	411.0
4	TraesCS7B01G409700	chr7A	97.163	141	4	0	2842	2982	691616437	691616577	3.940000e-59	239.0
5	TraesCS7B01G409700	chr7A	89.116	147	15	1	2195	2340	691534050	691533904	6.740000e-42	182.0
6	TraesCS7B01G409700	chr7A	88.889	144	15	1	2195	2337	691617297	691617440	3.130000e-40	176.0
7	TraesCS7B01G409700	chr7D	96.948	1966	53	5	1098	3059	599498058	599500020	0.000000e+00	3291.0
8	TraesCS7B01G409700	chr7D	92.662	695	42	4	1	695	14924530	14925215	0.000000e+00	992.0
9	TraesCS7B01G409700	chr7D	92.230	695	49	4	1	694	64047096	64047786	0.000000e+00	979.0
10	TraesCS7B01G409700	chr7D	92.075	694	49	4	1	693	175931750	175931062	0.000000e+00	972.0
11	TraesCS7B01G409700	chr7D	88.613	483	51	4	1854	2335	599501499	599501978	4.400000e-163	584.0
12	TraesCS7B01G409700	chr7D	89.583	144	14	1	2195	2337	599500699	599500842	6.740000e-42	182.0
13	TraesCS7B01G409700	chr7D	97.260	73	2	0	941	1013	599497697	599497769	1.150000e-24	124.0
14	TraesCS7B01G409700	chr6B	94.075	692	38	1	3	694	636475810	636476498	0.000000e+00	1048.0
15	TraesCS7B01G409700	chr2D	93.237	695	37	3	1	694	56633846	56634531	0.000000e+00	1014.0
16	TraesCS7B01G409700	chr2D	92.396	697	41	4	1	696	346437686	346438371	0.000000e+00	983.0
17	TraesCS7B01G409700	chr1D	92.960	696	42	2	1	695	250224999	250225688	0.000000e+00	1007.0
18	TraesCS7B01G409700	chr2B	92.418	699	49	3	1	695	236519863	236520561	0.000000e+00	994.0
19	TraesCS7B01G409700	chr4D	92.075	694	49	2	1	694	84466089	84465402	0.000000e+00	972.0
20	TraesCS7B01G409700	chr4B	97.500	40	1	0	823	862	572933584	572933545	5.470000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G409700	chr7B	678830318	678833376	3058	False	5650.000000	5650	100.000000	1	3059	1	chr7B.!!$F1	3058
1	TraesCS7B01G409700	chr7A	691532692	691537117	4425	True	1479.333333	3690	90.400333	702	3059	3	chr7A.!!$R1	2357
2	TraesCS7B01G409700	chr7A	691616437	691617860	1423	False	275.333333	411	90.848667	1952	2982	3	chr7A.!!$F1	1030
3	TraesCS7B01G409700	chr7D	599497697	599501978	4281	False	1045.250000	3291	93.101000	941	3059	4	chr7D.!!$F3	2118
4	TraesCS7B01G409700	chr7D	14924530	14925215	685	False	992.000000	992	92.662000	1	695	1	chr7D.!!$F1	694
5	TraesCS7B01G409700	chr7D	64047096	64047786	690	False	979.000000	979	92.230000	1	694	1	chr7D.!!$F2	693
6	TraesCS7B01G409700	chr7D	175931062	175931750	688	True	972.000000	972	92.075000	1	693	1	chr7D.!!$R1	692
7	TraesCS7B01G409700	chr6B	636475810	636476498	688	False	1048.000000	1048	94.075000	3	694	1	chr6B.!!$F1	691
8	TraesCS7B01G409700	chr2D	56633846	56634531	685	False	1014.000000	1014	93.237000	1	694	1	chr2D.!!$F1	693
9	TraesCS7B01G409700	chr2D	346437686	346438371	685	False	983.000000	983	92.396000	1	696	1	chr2D.!!$F2	695
10	TraesCS7B01G409700	chr1D	250224999	250225688	689	False	1007.000000	1007	92.960000	1	695	1	chr1D.!!$F1	694
11	TraesCS7B01G409700	chr2B	236519863	236520561	698	False	994.000000	994	92.418000	1	695	1	chr2B.!!$F1	694
12	TraesCS7B01G409700	chr4D	84465402	84466089	687	True	972.000000	972	92.075000	1	694	1	chr4D.!!$R1	693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
827	881	0.034059	ATCGTGGATTGGATCTCGCC	59.966	55.0	0.0	0.0	0.0	5.54	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2397	2665	0.46729	AACCGGCAAGGAATGTGTGT	60.467	50.0	0.0	0.0	45.0	3.72	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
70	71	2.877384	TGGATCCTCCAGTGGGGT	59.123	61.111	14.23	0.00	42.67	4.95
102	103	2.907236	GCCTGAGGAGGAAGAGGC	59.093	66.667	0.65	0.00	42.93	4.70
121	122	1.153647	CGAGCCTGGCGATGTTGTA	60.154	57.895	13.96	0.00	0.00	2.41
131	132	0.739462	CGATGTTGTAAGCTCCGGCA	60.739	55.000	0.00	0.00	41.70	5.69
156	157	1.894466	TGTGGAGGCATTTGACAATGG	59.106	47.619	0.00	0.00	40.36	3.16
214	215	3.788227	ATGTGGCTTAACAGAGGTCAA	57.212	42.857	0.00	0.00	32.52	3.18
219	220	3.019564	GGCTTAACAGAGGTCAATGCAT	58.980	45.455	0.00	0.00	0.00	3.96
268	306	0.954449	GAAGCAGCAGCAGAAGCAGA	60.954	55.000	3.17	0.00	45.49	4.26
303	347	4.959080	AGAAGAGGAAGAGGAAGAGGAAT	58.041	43.478	0.00	0.00	0.00	3.01
413	464	8.784043	GGATGAACTGTCATTTGTTTAACTAGT	58.216	33.333	0.00	0.00	44.83	2.57
463	514	5.541101	TGGTAAGCTCACCACTAGTTAGAAA	59.459	40.000	3.96	0.00	43.76	2.52
466	517	6.360370	AAGCTCACCACTAGTTAGAAATGA	57.640	37.500	0.00	0.00	0.00	2.57
525	576	2.290367	TCATATGTGCGCCTAATGCAAC	59.710	45.455	4.18	0.00	45.23	4.17
554	605	1.269998	CCAAACGCCGGGTCAAAAATA	59.730	47.619	2.18	0.00	0.00	1.40
578	630	4.188247	TGTCTCATGCAACTAGGTACAC	57.812	45.455	0.00	0.00	0.00	2.90
596	648	2.080693	CACGCAGGCAACCAAACTATA	58.919	47.619	0.00	0.00	37.17	1.31
602	654	4.613944	CAGGCAACCAAACTATATGCATG	58.386	43.478	10.16	0.00	41.46	4.06
623	677	1.203112	TGGGGTCTTTTTGCCTGCATA	60.203	47.619	0.00	0.00	0.00	3.14
633	687	0.676466	TGCCTGCATACCCTCAAACG	60.676	55.000	0.00	0.00	0.00	3.60
696	750	1.765230	TGTAACCAAACACGCCCTTT	58.235	45.000	0.00	0.00	0.00	3.11
697	751	1.677052	TGTAACCAAACACGCCCTTTC	59.323	47.619	0.00	0.00	0.00	2.62
698	752	1.001048	GTAACCAAACACGCCCTTTCC	60.001	52.381	0.00	0.00	0.00	3.13
699	753	1.396607	AACCAAACACGCCCTTTCCC	61.397	55.000	0.00	0.00	0.00	3.97
700	754	2.570284	CCAAACACGCCCTTTCCCC	61.570	63.158	0.00	0.00	0.00	4.81
710	764	1.824852	GCCCTTTCCCCTTTGTGTATG	59.175	52.381	0.00	0.00	0.00	2.39
720	774	2.440409	CTTTGTGTATGCTGAAGCCCT	58.560	47.619	0.00	0.00	41.18	5.19
722	776	0.692476	TGTGTATGCTGAAGCCCTGT	59.308	50.000	0.00	0.00	41.18	4.00
744	798	4.388773	GTCATGTGACAACTTCGAGCAATA	59.611	41.667	8.22	0.00	44.18	1.90
764	818	3.645053	ATACAGAGATCCCCTGTCCAT	57.355	47.619	18.25	7.99	43.18	3.41
772	826	2.615465	CCCCTGTCCATGGCTCCAA	61.615	63.158	6.96	0.00	0.00	3.53
786	840	2.159198	GGCTCCAAATGTTGCATCGAAT	60.159	45.455	0.00	0.00	0.00	3.34
805	859	0.671251	TCAACCAAATGTCAACGCCC	59.329	50.000	0.00	0.00	0.00	6.13
806	860	0.387202	CAACCAAATGTCAACGCCCA	59.613	50.000	0.00	0.00	0.00	5.36
827	881	0.034059	ATCGTGGATTGGATCTCGCC	59.966	55.000	0.00	0.00	0.00	5.54
833	887	3.403624	TTGGATCTCGCCAAGCCT	58.596	55.556	0.00	0.00	42.75	4.58
847	901	3.712881	GCCTCACGTGCCACGAAC	61.713	66.667	25.94	4.17	46.05	3.95
855	909	1.203313	GTGCCACGAACTTGCGTAC	59.797	57.895	0.00	0.00	43.59	3.67
870	924	3.981211	TGCGTACTCTCGGTAAAGTTTT	58.019	40.909	0.00	0.00	31.56	2.43
871	925	3.737266	TGCGTACTCTCGGTAAAGTTTTG	59.263	43.478	0.00	0.00	31.56	2.44
872	926	3.983344	GCGTACTCTCGGTAAAGTTTTGA	59.017	43.478	0.00	0.00	31.56	2.69
885	943	6.414109	GGTAAAGTTTTGACGAGAAGAAAAGC	59.586	38.462	0.00	0.00	0.00	3.51
886	944	4.197107	AGTTTTGACGAGAAGAAAAGCG	57.803	40.909	0.00	0.00	0.00	4.68
891	949	3.914312	TGACGAGAAGAAAAGCGAATCT	58.086	40.909	0.00	0.00	0.00	2.40
893	951	5.096169	TGACGAGAAGAAAAGCGAATCTAG	58.904	41.667	0.00	0.00	0.00	2.43
900	958	3.935828	AGAAAAGCGAATCTAGCCAAGTC	59.064	43.478	0.00	0.00	34.64	3.01
907	965	2.977772	ATCTAGCCAAGTCTCAGCAC	57.022	50.000	0.00	0.00	0.00	4.40
926	985	1.190833	CCTGCAGACCCACTCACTCT	61.191	60.000	17.39	0.00	0.00	3.24
927	986	0.037512	CTGCAGACCCACTCACTCTG	60.038	60.000	8.42	0.00	35.48	3.35
1026	1087	4.462280	GTCACCCCCGCCGGTAAG	62.462	72.222	1.90	0.00	33.67	2.34
1076	1142	2.201490	CCCCTCTCCCGCCATCTA	59.799	66.667	0.00	0.00	0.00	1.98
1080	1146	0.760945	CCTCTCCCGCCATCTAACCT	60.761	60.000	0.00	0.00	0.00	3.50
1081	1147	0.390860	CTCTCCCGCCATCTAACCTG	59.609	60.000	0.00	0.00	0.00	4.00
1082	1148	0.325296	TCTCCCGCCATCTAACCTGT	60.325	55.000	0.00	0.00	0.00	4.00
1083	1149	0.541863	CTCCCGCCATCTAACCTGTT	59.458	55.000	0.00	0.00	0.00	3.16
1086	1152	1.473434	CCCGCCATCTAACCTGTTCTC	60.473	57.143	0.00	0.00	0.00	2.87
1087	1153	1.482593	CCGCCATCTAACCTGTTCTCT	59.517	52.381	0.00	0.00	0.00	3.10
1088	1154	2.482142	CCGCCATCTAACCTGTTCTCTC	60.482	54.545	0.00	0.00	0.00	3.20
1653	1918	1.938585	ACTTCCATCCGGAGAACTCA	58.061	50.000	11.34	0.00	44.10	3.41
1758	2023	1.061799	CGCTGCGTGAATTCTTGCAC	61.062	55.000	14.93	13.93	33.12	4.57
1773	2038	1.672356	GCACGTGGATGACCTTGCT	60.672	57.895	18.88	0.00	35.66	3.91
1839	2104	2.714250	TGTAAATGTGGGGAGTGGAAGT	59.286	45.455	0.00	0.00	0.00	3.01
1887	2152	0.696143	TGGTCAAGGAGGTGGTTGGA	60.696	55.000	0.00	0.00	0.00	3.53
1905	2170	2.022428	TGGATTCCAGGGGAAGCTAGTA	60.022	50.000	12.42	0.00	46.08	1.82
2060	2325	2.029739	TCATCGCCGACAAGAAGTAACA	60.030	45.455	0.00	0.00	0.00	2.41
2199	2467	3.059352	AGAGGTTGCTATGTGTTGGTC	57.941	47.619	0.00	0.00	0.00	4.02
2254	2522	5.670149	AGAATCTTAATTGATGCTGAGCG	57.330	39.130	0.00	0.00	31.42	5.03
2322	2590	2.895404	ACTGGCCTACACTCGTTCTTTA	59.105	45.455	3.32	0.00	0.00	1.85
2397	2665	6.885376	TGCCCTTTAAATTTGTATCCGTCTTA	59.115	34.615	0.00	0.00	0.00	2.10
2422	2690	0.323725	ATTCCTTGCCGGTTCTGCAT	60.324	50.000	1.90	0.00	38.76	3.96
2427	2695	2.948979	CCTTGCCGGTTCTGCATAATTA	59.051	45.455	1.90	0.00	38.76	1.40
2431	2699	5.590530	TGCCGGTTCTGCATAATTATTTT	57.409	34.783	1.90	0.00	32.85	1.82
2455	2723	3.898123	TCTGAAGAGTCTGCTTACTTGGT	59.102	43.478	0.00	0.00	0.00	3.67
2482	2750	7.116662	TGTCAATGCATCAGATTTTTAACAAGC	59.883	33.333	0.00	0.00	0.00	4.01
2487	2755	5.803967	GCATCAGATTTTTAACAAGCTCAGG	59.196	40.000	0.00	0.00	0.00	3.86
2681	2950	9.707957	TTCCAGGGCTTTATATTTTCATTAAGA	57.292	29.630	0.00	0.00	0.00	2.10
2704	2973	3.181503	CCATCAGATGTGCTGCAACTTAC	60.182	47.826	2.77	0.00	44.52	2.34
2746	3015	6.828785	AGATTTTATGTCAAGGATAAACCGCT	59.171	34.615	0.00	0.00	44.74	5.52
2770	3039	3.511934	TCTGTTAGACTTGCCTTCTCCTC	59.488	47.826	0.00	0.00	0.00	3.71
2901	3170	6.523676	AACAAGTTGCATTACCATTTTTCG	57.476	33.333	1.81	0.00	0.00	3.46
3021	3290	6.042093	TCCAGACTTTGAACAGTAGTGATTCT	59.958	38.462	4.09	0.00	0.00	2.40
3026	3295	7.085116	ACTTTGAACAGTAGTGATTCTAGACG	58.915	38.462	4.09	0.00	0.00	4.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
70	71	2.290367	CTCAGGCACGTGTTCATCAAAA	59.710	45.455	18.38	0.00	0.00	2.44
102	103	2.572095	TACAACATCGCCAGGCTCGG	62.572	60.000	10.54	0.31	0.00	4.63
121	122	1.973281	CACACCATTGCCGGAGCTT	60.973	57.895	5.05	0.00	40.80	3.74
131	132	1.895131	GTCAAATGCCTCCACACCATT	59.105	47.619	0.00	0.00	0.00	3.16
156	157	1.067060	ACCTTTTGTTCTTCCAAGCGC	59.933	47.619	0.00	0.00	0.00	5.92
214	215	4.888239	CCTCCTCTTCTTCAAATCATGCAT	59.112	41.667	0.00	0.00	0.00	3.96
219	220	4.429505	TCCTCCTCCTCTTCTTCAAATCA	58.570	43.478	0.00	0.00	0.00	2.57
268	306	2.636893	TCCTCTTCTTCTGCTTCTGCTT	59.363	45.455	0.00	0.00	40.48	3.91
303	347	1.134818	CGGTGTTGCTGCTACCAGATA	60.135	52.381	11.51	0.00	41.77	1.98
413	464	4.216042	CACAATCTGAACATGTAGTGCCAA	59.784	41.667	0.00	0.00	0.00	4.52
463	514	3.949754	CCTGCATAAGGTGTTGTCATCAT	59.050	43.478	0.00	0.00	41.74	2.45
578	630	2.541588	GCATATAGTTTGGTTGCCTGCG	60.542	50.000	0.00	0.00	0.00	5.18
596	648	1.002315	GCAAAAAGACCCCACATGCAT	59.998	47.619	0.00	0.00	32.80	3.96
602	654	1.367471	GCAGGCAAAAAGACCCCAC	59.633	57.895	0.00	0.00	0.00	4.61
660	714	2.479566	ACATTGTCAATCGAGCCTGT	57.520	45.000	0.00	0.00	0.00	4.00
696	750	2.879756	GCTTCAGCATACACAAAGGGGA	60.880	50.000	0.00	0.00	41.59	4.81
697	751	1.474077	GCTTCAGCATACACAAAGGGG	59.526	52.381	0.00	0.00	41.59	4.79
698	752	1.474077	GGCTTCAGCATACACAAAGGG	59.526	52.381	0.30	0.00	44.36	3.95
699	753	1.474077	GGGCTTCAGCATACACAAAGG	59.526	52.381	0.30	0.00	44.36	3.11
700	754	2.163010	CAGGGCTTCAGCATACACAAAG	59.837	50.000	0.30	0.00	44.36	2.77
710	764	0.321919	TCACATGACAGGGCTTCAGC	60.322	55.000	0.00	0.00	41.14	4.26
722	776	2.524569	TGCTCGAAGTTGTCACATGA	57.475	45.000	0.00	0.00	0.00	3.07
736	790	3.766591	AGGGGATCTCTGTATATTGCTCG	59.233	47.826	0.00	0.00	0.00	5.03
744	798	3.246301	CATGGACAGGGGATCTCTGTAT	58.754	50.000	17.67	9.41	44.51	2.29
764	818	0.527113	CGATGCAACATTTGGAGCCA	59.473	50.000	0.00	0.00	33.60	4.75
772	826	4.517952	TTGGTTGATTCGATGCAACATT	57.482	36.364	23.66	0.00	44.59	2.71
786	840	0.671251	GGGCGTTGACATTTGGTTGA	59.329	50.000	0.00	0.00	0.00	3.18
805	859	2.130395	CGAGATCCAATCCACGATGTG	58.870	52.381	0.00	0.00	33.60	3.21
806	860	1.539065	GCGAGATCCAATCCACGATGT	60.539	52.381	0.00	0.00	33.60	3.06
827	881	3.716006	CGTGGCACGTGAGGCTTG	61.716	66.667	30.56	0.03	36.74	4.01
829	883	3.923864	TTCGTGGCACGTGAGGCT	61.924	61.111	35.65	0.00	43.14	4.58
833	887	2.530497	GCAAGTTCGTGGCACGTGA	61.530	57.895	35.65	23.92	43.14	4.35
855	909	4.543692	TCTCGTCAAAACTTTACCGAGAG	58.456	43.478	15.67	4.67	40.48	3.20
870	924	3.914312	AGATTCGCTTTTCTTCTCGTCA	58.086	40.909	0.00	0.00	0.00	4.35
871	925	4.027214	GCTAGATTCGCTTTTCTTCTCGTC	60.027	45.833	0.00	0.00	0.00	4.20
872	926	3.860536	GCTAGATTCGCTTTTCTTCTCGT	59.139	43.478	0.00	0.00	0.00	4.18
885	943	2.159184	TGCTGAGACTTGGCTAGATTCG	60.159	50.000	2.20	0.00	0.00	3.34
886	944	3.194062	GTGCTGAGACTTGGCTAGATTC	58.806	50.000	2.20	0.70	0.00	2.52
891	949	0.610174	CAGGTGCTGAGACTTGGCTA	59.390	55.000	0.00	0.00	32.44	3.93
893	951	2.331132	GCAGGTGCTGAGACTTGGC	61.331	63.158	0.00	0.00	38.21	4.52
900	958	2.046507	GGGTCTGCAGGTGCTGAG	60.047	66.667	15.13	0.00	46.96	3.35
907	965	1.190833	AGAGTGAGTGGGTCTGCAGG	61.191	60.000	15.13	0.00	0.00	4.85
926	985	2.224159	GGTGGAGTCAAGGAGGCCA	61.224	63.158	5.01	0.00	0.00	5.36
927	986	2.671682	GGTGGAGTCAAGGAGGCC	59.328	66.667	0.00	0.00	0.00	5.19
1058	1119	2.965226	TTAGATGGCGGGAGAGGGGG	62.965	65.000	0.00	0.00	0.00	5.40
1063	1124	0.325296	ACAGGTTAGATGGCGGGAGA	60.325	55.000	0.00	0.00	0.00	3.71
1069	1135	2.482142	CGGAGAGAACAGGTTAGATGGC	60.482	54.545	0.00	0.00	0.00	4.40
1076	1142	1.205893	GATCTGCGGAGAGAACAGGTT	59.794	52.381	13.48	0.00	32.19	3.50
1080	1146	1.809869	CGGATCTGCGGAGAGAACA	59.190	57.895	13.48	0.00	0.00	3.18
1081	1147	1.590259	GCGGATCTGCGGAGAGAAC	60.590	63.158	13.48	6.41	0.00	3.01
1082	1148	2.052104	TGCGGATCTGCGGAGAGAA	61.052	57.895	21.30	0.00	37.81	2.87
1083	1149	2.440247	TGCGGATCTGCGGAGAGA	60.440	61.111	21.30	0.00	37.81	3.10
1086	1152	4.899239	GGGTGCGGATCTGCGGAG	62.899	72.222	21.30	0.00	37.81	4.63
1641	1906	1.521450	GGACGTGTGAGTTCTCCGGA	61.521	60.000	2.93	2.93	0.00	5.14
1758	2023	1.012086	CATCAGCAAGGTCATCCACG	58.988	55.000	0.00	0.00	35.89	4.94
1761	2026	1.442526	CCGCATCAGCAAGGTCATCC	61.443	60.000	0.00	0.00	42.27	3.51
1773	2038	3.200483	CATCAAGAAGATCACCGCATCA	58.800	45.455	0.00	0.00	33.72	3.07
1815	2080	2.647299	TCCACTCCCCACATTTACATGT	59.353	45.455	2.69	2.69	45.18	3.21
1839	2104	2.501723	GAGCTCCTTGATGGTAACCTCA	59.498	50.000	0.87	0.00	39.64	3.86
1887	2152	2.982488	CCATACTAGCTTCCCCTGGAAT	59.018	50.000	0.00	0.00	41.23	3.01
1905	2170	2.990479	GGCTTGGTCGAGTCCCAT	59.010	61.111	0.00	0.00	0.00	4.00
2060	2325	3.136641	AGGAGAACATGATACCACCCT	57.863	47.619	0.00	0.00	0.00	4.34
2121	2389	7.987458	GTGATCCAGTATCCAACAAGAATAGAA	59.013	37.037	0.00	0.00	33.22	2.10
2322	2590	7.123098	TCAATATCTGTTTCATGCTGAATTGGT	59.877	33.333	0.00	0.00	36.11	3.67
2390	2658	2.159627	GCAAGGAATGTGTGTAAGACGG	59.840	50.000	0.00	0.00	29.10	4.79
2391	2659	2.159627	GGCAAGGAATGTGTGTAAGACG	59.840	50.000	0.00	0.00	29.10	4.18
2397	2665	0.467290	AACCGGCAAGGAATGTGTGT	60.467	50.000	0.00	0.00	45.00	3.72
2431	2699	5.163301	ACCAAGTAAGCAGACTCTTCAGAAA	60.163	40.000	0.00	0.00	0.00	2.52
2455	2723	8.883954	TTGTTAAAAATCTGATGCATTGACAA	57.116	26.923	0.00	12.43	0.00	3.18
2482	2750	5.183713	TCTGCACCAATTTTTACATCCTGAG	59.816	40.000	0.00	0.00	0.00	3.35
2487	2755	6.012658	TCACTCTGCACCAATTTTTACATC	57.987	37.500	0.00	0.00	0.00	3.06
2612	2881	5.046159	ACAAATTACCCGATACTGGTTGAGA	60.046	40.000	0.00	0.00	37.31	3.27
2681	2950	1.171308	GTTGCAGCACATCTGATGGT	58.829	50.000	20.83	4.96	45.72	3.55
2746	3015	4.348168	AGGAGAAGGCAAGTCTAACAGAAA	59.652	41.667	0.00	0.00	0.00	2.52
2864	3133	6.961576	TGCAACTTGTTACCTTATTGTACAC	58.038	36.000	0.00	0.00	0.00	2.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.