Multiple sequence alignment - TraesCS7B01G409600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G409600 chr7B 100.000 5211 0 0 1 5211 678774862 678769652 0.000000e+00 9624.0
1 TraesCS7B01G409600 chr7B 84.964 419 46 15 4671 5079 683520148 683520559 4.860000e-110 409.0
2 TraesCS7B01G409600 chr7B 89.954 219 15 6 4671 4887 683519524 683519737 5.140000e-70 276.0
3 TraesCS7B01G409600 chr7B 79.412 136 7 13 338 455 707709702 707709570 5.600000e-10 76.8
4 TraesCS7B01G409600 chr7D 92.051 2453 141 23 1961 4375 599483435 599480999 0.000000e+00 3400.0
5 TraesCS7B01G409600 chr7D 88.046 1581 97 33 464 1996 599484989 599483453 0.000000e+00 1788.0
6 TraesCS7B01G409600 chr7D 87.643 437 24 5 4651 5085 599480763 599480355 1.010000e-131 481.0
7 TraesCS7B01G409600 chr7D 92.929 99 6 1 4 102 599485469 599485372 5.440000e-30 143.0
8 TraesCS7B01G409600 chr7D 94.382 89 4 1 5113 5201 599480360 599480273 9.100000e-28 135.0
9 TraesCS7B01G409600 chr7D 92.500 80 5 1 338 417 615414858 615414780 4.260000e-21 113.0
10 TraesCS7B01G409600 chr7A 89.424 1579 97 27 464 1996 691600459 691602013 0.000000e+00 1927.0
11 TraesCS7B01G409600 chr7A 91.088 1425 101 14 3107 4521 691603216 691604624 0.000000e+00 1905.0
12 TraesCS7B01G409600 chr7A 92.803 1181 72 6 1957 3125 691602025 691603204 0.000000e+00 1698.0
13 TraesCS7B01G409600 chr7A 91.909 482 33 5 4671 5148 691604769 691605248 0.000000e+00 669.0
14 TraesCS7B01G409600 chr4A 83.059 425 58 12 4662 5077 732905982 732905563 1.770000e-99 374.0
15 TraesCS7B01G409600 chr3B 83.392 283 30 10 1794 2076 737333684 737333419 4.030000e-61 246.0
16 TraesCS7B01G409600 chr3B 82.528 269 26 9 1794 2055 737379361 737379107 3.160000e-52 217.0
17 TraesCS7B01G409600 chr3A 83.636 275 28 9 1795 2069 691653994 691653737 5.210000e-60 243.0
18 TraesCS7B01G409600 chr3A 90.244 82 7 1 337 418 19471063 19470983 7.140000e-19 106.0
19 TraesCS7B01G409600 chr2D 92.500 80 5 1 338 417 602699743 602699665 4.260000e-21 113.0
20 TraesCS7B01G409600 chr2D 95.455 44 1 1 412 455 345078579 345078537 9.360000e-08 69.4
21 TraesCS7B01G409600 chr2A 92.500 80 5 1 338 417 566852106 566852184 4.260000e-21 113.0
22 TraesCS7B01G409600 chr1B 84.000 125 11 3 338 455 38277485 38277607 1.530000e-20 111.0
23 TraesCS7B01G409600 chr1A 91.250 80 6 1 338 417 23426981 23426903 1.980000e-19 108.0
24 TraesCS7B01G409600 chr1A 78.676 136 9 14 338 455 84012533 84012400 7.240000e-09 73.1
25 TraesCS7B01G409600 chr5B 91.781 73 5 1 339 411 522008317 522008388 3.320000e-17 100.0
26 TraesCS7B01G409600 chrUn 88.889 81 8 1 337 417 20846129 20846208 1.190000e-16 99.0
27 TraesCS7B01G409600 chr1D 87.500 80 9 1 338 417 460745037 460744959 2.000000e-14 91.6
28 TraesCS7B01G409600 chr4D 87.500 80 6 4 338 417 319254373 319254448 7.190000e-14 89.8
29 TraesCS7B01G409600 chr4D 95.349 43 1 1 413 455 319254462 319254503 3.370000e-07 67.6
30 TraesCS7B01G409600 chr5D 79.412 136 8 10 338 455 27354267 27354400 1.560000e-10 78.7
31 TraesCS7B01G409600 chr5D 78.676 136 9 10 338 455 198954921 198955054 7.240000e-09 73.1
32 TraesCS7B01G409600 chr6D 95.455 44 1 1 412 455 402128373 402128331 9.360000e-08 69.4
33 TraesCS7B01G409600 chr3D 91.837 49 2 2 412 460 460529207 460529253 3.370000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G409600 chr7B 678769652 678774862 5210 True 9624.00 9624 100.0000 1 5211 1 chr7B.!!$R1 5210
1 TraesCS7B01G409600 chr7B 683519524 683520559 1035 False 342.50 409 87.4590 4671 5079 2 chr7B.!!$F1 408
2 TraesCS7B01G409600 chr7D 599480273 599485469 5196 True 1189.40 3400 91.0102 4 5201 5 chr7D.!!$R2 5197
3 TraesCS7B01G409600 chr7A 691600459 691605248 4789 False 1549.75 1927 91.3060 464 5148 4 chr7A.!!$F1 4684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 194 0.035439 AATCAATGAACGCCGGACCT 60.035 50.0 5.05 0.00 0.00 3.85 F
681 741 0.105760 TCACCACCAAGCAACCCAAT 60.106 50.0 0.00 0.00 0.00 3.16 F
983 1072 0.546747 TGGGAAGGATCGAGGTTGGT 60.547 55.0 0.00 0.00 0.00 3.67 F
1276 1379 0.814457 TGCTGTTGTTGTGGTGGTTC 59.186 50.0 0.00 0.00 0.00 3.62 F
2867 3070 0.472044 TGCAGAAGTGTACAAGGGCA 59.528 50.0 0.00 0.78 0.00 5.36 F
3156 3388 0.038251 TCAGTGACACTGGCGATGAC 60.038 55.0 30.39 0.00 45.94 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1261 1361 0.099791 CCACGAACCACCACAACAAC 59.900 55.000 0.00 0.00 0.00 3.32 R
2288 2477 0.381801 CTGCCTGCAGTTTGACGTTT 59.618 50.000 13.81 0.00 39.10 3.60 R
2451 2640 0.673022 CTCTTCAGTGACCTGCAGGC 60.673 60.000 33.06 24.14 38.66 4.85 R
2950 3153 0.762461 GCACCTGGATCCCTAGCTCT 60.762 60.000 9.90 0.00 0.00 4.09 R
3909 4167 1.009900 GTCGTAGTCATCGCCGAGG 60.010 63.158 0.00 0.00 0.00 4.63 R
4410 4691 1.673665 CTCTGGTGCTGTGGAAGGC 60.674 63.158 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 6.820656 GTCTCTCCATCAACACAATATGAAGT 59.179 38.462 0.00 0.00 0.00 3.01
108 109 8.666573 TGAAGTTACTACTCAAGATAGAGAACG 58.333 37.037 0.00 0.00 38.98 3.95
113 114 7.918536 ACTACTCAAGATAGAGAACGTACAA 57.081 36.000 0.00 0.00 38.98 2.41
116 117 9.279904 CTACTCAAGATAGAGAACGTACAAAAG 57.720 37.037 0.00 0.00 38.98 2.27
117 118 6.586844 ACTCAAGATAGAGAACGTACAAAAGC 59.413 38.462 0.00 0.00 38.98 3.51
118 119 6.688578 TCAAGATAGAGAACGTACAAAAGCT 58.311 36.000 0.00 0.00 0.00 3.74
120 121 7.328737 TCAAGATAGAGAACGTACAAAAGCTTC 59.671 37.037 0.00 0.00 0.00 3.86
121 122 6.688578 AGATAGAGAACGTACAAAAGCTTCA 58.311 36.000 0.00 0.00 0.00 3.02
122 123 7.324178 AGATAGAGAACGTACAAAAGCTTCAT 58.676 34.615 0.00 0.00 0.00 2.57
123 124 5.597813 AGAGAACGTACAAAAGCTTCATG 57.402 39.130 0.00 4.95 0.00 3.07
125 126 3.563808 AGAACGTACAAAAGCTTCATGCA 59.436 39.130 0.00 0.00 45.94 3.96
127 128 4.503741 ACGTACAAAAGCTTCATGCAAT 57.496 36.364 0.00 0.00 45.94 3.56
128 129 4.870363 ACGTACAAAAGCTTCATGCAATT 58.130 34.783 0.00 0.00 45.94 2.32
130 131 4.324402 CGTACAAAAGCTTCATGCAATTCC 59.676 41.667 0.00 0.00 45.94 3.01
131 132 4.612264 ACAAAAGCTTCATGCAATTCCT 57.388 36.364 0.00 0.00 45.94 3.36
132 133 4.964593 ACAAAAGCTTCATGCAATTCCTT 58.035 34.783 0.00 0.00 45.94 3.36
133 134 4.992951 ACAAAAGCTTCATGCAATTCCTTC 59.007 37.500 0.00 0.00 45.94 3.46
134 135 4.877378 AAAGCTTCATGCAATTCCTTCA 57.123 36.364 0.00 0.00 45.94 3.02
136 137 5.416271 AAGCTTCATGCAATTCCTTCAAT 57.584 34.783 0.00 0.00 45.94 2.57
137 138 6.534475 AAGCTTCATGCAATTCCTTCAATA 57.466 33.333 0.00 0.00 45.94 1.90
139 140 6.938507 AGCTTCATGCAATTCCTTCAATAAA 58.061 32.000 0.00 0.00 45.94 1.40
141 142 7.037438 GCTTCATGCAATTCCTTCAATAAAGA 58.963 34.615 0.00 0.00 42.31 2.52
144 145 7.765307 TCATGCAATTCCTTCAATAAAGAGAC 58.235 34.615 0.00 0.00 37.12 3.36
147 148 6.128282 TGCAATTCCTTCAATAAAGAGACGTC 60.128 38.462 7.70 7.70 37.12 4.34
148 149 6.470160 CAATTCCTTCAATAAAGAGACGTCG 58.530 40.000 10.46 0.00 37.12 5.12
150 151 3.057104 TCCTTCAATAAAGAGACGTCGCA 60.057 43.478 21.54 0.83 37.12 5.10
153 154 3.845178 TCAATAAAGAGACGTCGCATGT 58.155 40.909 21.54 8.18 0.00 3.21
154 155 4.989044 TCAATAAAGAGACGTCGCATGTA 58.011 39.130 21.54 10.07 0.00 2.29
155 156 4.796830 TCAATAAAGAGACGTCGCATGTAC 59.203 41.667 21.54 3.51 0.00 2.90
156 157 2.717580 AAAGAGACGTCGCATGTACA 57.282 45.000 21.54 0.00 0.00 2.90
157 158 2.717580 AAGAGACGTCGCATGTACAA 57.282 45.000 21.54 0.00 0.00 2.41
158 159 1.978542 AGAGACGTCGCATGTACAAC 58.021 50.000 21.54 0.00 0.00 3.32
159 160 0.633733 GAGACGTCGCATGTACAACG 59.366 55.000 14.83 14.55 40.77 4.10
160 161 4.639824 ACGTCGCATGTACAACGT 57.360 50.000 15.73 15.73 42.96 3.99
163 164 2.598589 ACGTCGCATGTACAACGTAAT 58.401 42.857 19.00 5.44 45.59 1.89
164 165 2.988493 ACGTCGCATGTACAACGTAATT 59.012 40.909 19.00 0.00 45.59 1.40
179 180 7.906611 CAACGTAATTGTCAACTTCAATCAA 57.093 32.000 0.00 0.00 34.92 2.57
181 182 8.419435 CAACGTAATTGTCAACTTCAATCAATG 58.581 33.333 0.00 0.00 34.92 2.82
182 183 7.870826 ACGTAATTGTCAACTTCAATCAATGA 58.129 30.769 0.00 0.00 34.92 2.57
183 184 8.349245 ACGTAATTGTCAACTTCAATCAATGAA 58.651 29.630 0.00 0.00 45.71 2.57
185 186 7.627585 AATTGTCAACTTCAATCAATGAACG 57.372 32.000 0.00 0.00 43.08 3.95
187 188 3.914364 GTCAACTTCAATCAATGAACGCC 59.086 43.478 0.00 0.00 43.08 5.68
188 189 2.900122 ACTTCAATCAATGAACGCCG 57.100 45.000 0.00 0.00 43.08 6.46
190 191 1.737236 CTTCAATCAATGAACGCCGGA 59.263 47.619 5.05 0.00 43.08 5.14
191 192 1.083489 TCAATCAATGAACGCCGGAC 58.917 50.000 5.05 0.00 34.30 4.79
192 193 0.098728 CAATCAATGAACGCCGGACC 59.901 55.000 5.05 0.00 0.00 4.46
193 194 0.035439 AATCAATGAACGCCGGACCT 60.035 50.000 5.05 0.00 0.00 3.85
194 195 0.828022 ATCAATGAACGCCGGACCTA 59.172 50.000 5.05 0.00 0.00 3.08
197 198 0.460311 AATGAACGCCGGACCTAGAG 59.540 55.000 5.05 0.00 0.00 2.43
198 199 0.683504 ATGAACGCCGGACCTAGAGT 60.684 55.000 5.05 0.00 0.00 3.24
200 201 0.245813 GAACGCCGGACCTAGAGTTT 59.754 55.000 5.05 0.00 0.00 2.66
202 203 0.896940 ACGCCGGACCTAGAGTTTCA 60.897 55.000 5.05 0.00 0.00 2.69
203 204 0.458025 CGCCGGACCTAGAGTTTCAC 60.458 60.000 5.05 0.00 0.00 3.18
204 205 0.108281 GCCGGACCTAGAGTTTCACC 60.108 60.000 5.05 0.00 0.00 4.02
207 208 1.895866 CGGACCTAGAGTTTCACCCCT 60.896 57.143 0.00 0.00 0.00 4.79
209 210 0.984995 ACCTAGAGTTTCACCCCTGC 59.015 55.000 0.00 0.00 0.00 4.85
210 211 0.984230 CCTAGAGTTTCACCCCTGCA 59.016 55.000 0.00 0.00 0.00 4.41
211 212 1.351017 CCTAGAGTTTCACCCCTGCAA 59.649 52.381 0.00 0.00 0.00 4.08
212 213 2.427506 CTAGAGTTTCACCCCTGCAAC 58.572 52.381 0.00 0.00 0.00 4.17
213 214 0.846693 AGAGTTTCACCCCTGCAACT 59.153 50.000 0.00 0.00 36.67 3.16
214 215 1.202818 AGAGTTTCACCCCTGCAACTC 60.203 52.381 5.43 5.43 45.75 3.01
215 216 0.535102 AGTTTCACCCCTGCAACTCG 60.535 55.000 0.00 0.00 28.80 4.18
216 217 0.534203 GTTTCACCCCTGCAACTCGA 60.534 55.000 0.00 0.00 0.00 4.04
218 219 2.731691 TTCACCCCTGCAACTCGAGC 62.732 60.000 13.61 0.00 0.00 5.03
220 221 4.785453 CCCCTGCAACTCGAGCCC 62.785 72.222 13.61 1.16 0.00 5.19
224 272 4.704833 TGCAACTCGAGCCCCTGC 62.705 66.667 13.61 16.19 37.95 4.85
234 282 2.276309 GAGCCCCTGCACCTTAGCAT 62.276 60.000 0.00 0.00 44.68 3.79
235 283 1.825622 GCCCCTGCACCTTAGCATC 60.826 63.158 0.00 0.00 44.68 3.91
243 291 3.221771 TGCACCTTAGCATCACAACTTT 58.778 40.909 0.00 0.00 40.11 2.66
251 299 1.733389 GCATCACAACTTTCGGCCATG 60.733 52.381 2.24 0.00 0.00 3.66
268 318 0.757935 ATGGGATGCAATGTCAGGCC 60.758 55.000 0.00 0.00 0.00 5.19
269 319 1.380246 GGGATGCAATGTCAGGCCA 60.380 57.895 5.01 0.00 0.00 5.36
270 320 1.389609 GGGATGCAATGTCAGGCCAG 61.390 60.000 5.01 0.00 0.00 4.85
285 335 1.817099 CCAGCTCTGGCGATGGAAC 60.817 63.158 2.59 0.00 44.73 3.62
286 336 2.169789 CAGCTCTGGCGATGGAACG 61.170 63.158 0.00 0.00 44.37 3.95
287 337 2.184322 GCTCTGGCGATGGAACGA 59.816 61.111 0.00 0.00 35.09 3.85
288 338 2.167861 GCTCTGGCGATGGAACGAC 61.168 63.158 0.00 0.00 42.12 4.34
290 340 2.885644 CTGGCGATGGAACGACGG 60.886 66.667 0.00 0.00 45.00 4.79
292 342 2.582498 GGCGATGGAACGACGGAG 60.582 66.667 0.00 0.00 35.09 4.63
312 363 1.014352 GCGGTGGTTGGCTGTATTAG 58.986 55.000 0.00 0.00 0.00 1.73
318 369 3.453353 GTGGTTGGCTGTATTAGGACCTA 59.547 47.826 0.00 0.00 0.00 3.08
327 378 8.599792 TGGCTGTATTAGGACCTAATTATAACC 58.400 37.037 27.78 21.80 37.72 2.85
372 423 9.716556 AAGACCTTTTAGAGATTCCACTATAGA 57.283 33.333 6.78 0.00 0.00 1.98
375 426 8.919145 ACCTTTTAGAGATTCCACTATAGACTG 58.081 37.037 6.78 0.00 0.00 3.51
376 427 7.870445 CCTTTTAGAGATTCCACTATAGACTGC 59.130 40.741 6.78 0.00 0.00 4.40
377 428 7.898014 TTTAGAGATTCCACTATAGACTGCA 57.102 36.000 6.78 0.00 0.00 4.41
383 434 6.956435 AGATTCCACTATAGACTGCATATGGA 59.044 38.462 6.78 3.57 33.21 3.41
384 435 6.596309 TTCCACTATAGACTGCATATGGAG 57.404 41.667 21.44 21.44 36.41 3.86
387 438 7.238710 TCCACTATAGACTGCATATGGAGTAA 58.761 38.462 27.44 19.25 46.89 2.24
391 442 9.935241 ACTATAGACTGCATATGGAGTAAAATG 57.065 33.333 27.44 19.21 46.89 2.32
394 445 5.762218 AGACTGCATATGGAGTAAAATGAGC 59.238 40.000 27.44 13.71 46.89 4.26
395 446 4.512944 ACTGCATATGGAGTAAAATGAGCG 59.487 41.667 26.44 0.00 45.07 5.03
398 449 5.764686 TGCATATGGAGTAAAATGAGCGAAT 59.235 36.000 4.56 0.00 0.00 3.34
399 450 6.073058 TGCATATGGAGTAAAATGAGCGAATC 60.073 38.462 4.56 0.00 0.00 2.52
404 455 5.106712 TGGAGTAAAATGAGCGAATCAACAC 60.107 40.000 0.00 0.00 42.53 3.32
407 458 5.934625 AGTAAAATGAGCGAATCAACACTCT 59.065 36.000 0.00 0.00 42.53 3.24
408 459 7.097192 AGTAAAATGAGCGAATCAACACTCTA 58.903 34.615 0.00 0.00 42.53 2.43
413 464 6.020971 TGAGCGAATCAACACTCTAAAGTA 57.979 37.500 0.00 0.00 34.02 2.24
414 465 6.631016 TGAGCGAATCAACACTCTAAAGTAT 58.369 36.000 0.00 0.00 34.02 2.12
415 466 6.531594 TGAGCGAATCAACACTCTAAAGTATG 59.468 38.462 0.00 0.00 34.02 2.39
416 467 6.398918 AGCGAATCAACACTCTAAAGTATGT 58.601 36.000 0.00 0.00 33.25 2.29
419 470 7.488471 GCGAATCAACACTCTAAAGTATGTAGT 59.512 37.037 0.00 0.00 33.25 2.73
420 471 9.011407 CGAATCAACACTCTAAAGTATGTAGTC 57.989 37.037 0.00 0.00 33.25 2.59
421 472 9.303537 GAATCAACACTCTAAAGTATGTAGTCC 57.696 37.037 0.00 0.00 33.25 3.85
422 473 7.770366 TCAACACTCTAAAGTATGTAGTCCA 57.230 36.000 0.00 0.00 33.25 4.02
424 475 9.470399 TCAACACTCTAAAGTATGTAGTCCATA 57.530 33.333 0.00 0.00 34.86 2.74
425 476 9.737427 CAACACTCTAAAGTATGTAGTCCATAG 57.263 37.037 0.00 0.00 36.71 2.23
427 478 8.904834 ACACTCTAAAGTATGTAGTCCATAGTG 58.095 37.037 0.00 0.00 39.22 2.74
428 479 8.353684 CACTCTAAAGTATGTAGTCCATAGTGG 58.646 40.741 0.00 0.00 39.22 4.00
444 495 8.380742 TCCATAGTGGAATCTCTAAAAGTTCT 57.619 34.615 0.00 0.00 45.00 3.01
549 609 9.570488 TTAAAACGGTTATATAAAATGCACCAC 57.430 29.630 0.00 0.00 0.00 4.16
612 672 1.022735 CAGATCCAAGCATGAGCCAC 58.977 55.000 0.00 0.00 43.56 5.01
681 741 0.105760 TCACCACCAAGCAACCCAAT 60.106 50.000 0.00 0.00 0.00 3.16
936 1025 3.379445 GCCTTCGTCCTCCGGTCA 61.379 66.667 0.00 0.00 37.11 4.02
952 1041 1.621814 GGTCACAGCCACTAACCAGTA 59.378 52.381 0.00 0.00 32.21 2.74
953 1042 2.353803 GGTCACAGCCACTAACCAGTAG 60.354 54.545 0.00 0.00 32.21 2.57
964 1053 3.072476 CCAGTAGTGGTGCTGCCT 58.928 61.111 8.59 0.00 39.30 4.75
965 1054 1.376424 CCAGTAGTGGTGCTGCCTG 60.376 63.158 8.59 0.00 39.30 4.85
966 1055 1.376424 CAGTAGTGGTGCTGCCTGG 60.376 63.158 0.00 0.00 38.35 4.45
967 1056 2.045926 GTAGTGGTGCTGCCTGGG 60.046 66.667 0.00 0.00 38.35 4.45
968 1057 2.203922 TAGTGGTGCTGCCTGGGA 60.204 61.111 0.00 0.00 38.35 4.37
969 1058 1.845664 TAGTGGTGCTGCCTGGGAA 60.846 57.895 0.00 0.00 38.35 3.97
979 1068 2.066999 GCCTGGGAAGGATCGAGGT 61.067 63.158 0.00 0.00 31.46 3.85
983 1072 0.546747 TGGGAAGGATCGAGGTTGGT 60.547 55.000 0.00 0.00 0.00 3.67
984 1073 1.273381 TGGGAAGGATCGAGGTTGGTA 60.273 52.381 0.00 0.00 0.00 3.25
994 1083 0.910338 GAGGTTGGTAAGGGGAGGTC 59.090 60.000 0.00 0.00 0.00 3.85
1074 1172 3.441290 CTGCTGCTGCTTGGCTCC 61.441 66.667 17.00 0.00 40.48 4.70
1146 1244 3.000819 TGGGCGATCAGGGTCGTT 61.001 61.111 3.69 0.00 43.27 3.85
1161 1259 2.335011 GTTGCCAAGCCCAACGAC 59.665 61.111 0.00 0.00 34.01 4.34
1176 1274 4.395583 GACTCCGTCGTCGCCGTT 62.396 66.667 0.00 0.00 35.54 4.44
1182 1280 2.369629 CGTCGTCGCCGTTCATGTT 61.370 57.895 0.00 0.00 35.01 2.71
1194 1292 2.803956 CGTTCATGTTCTTGGTAACCGT 59.196 45.455 0.00 0.00 0.00 4.83
1198 1296 2.536761 TGTTCTTGGTAACCGTCTGG 57.463 50.000 0.00 0.00 42.84 3.86
1218 1316 4.367450 TGGCAATTTTACTTGTGTTGCTC 58.633 39.130 8.10 0.66 43.36 4.26
1223 1321 6.215121 CAATTTTACTTGTGTTGCTCCATGA 58.785 36.000 0.00 0.00 0.00 3.07
1227 1325 7.701539 TTTACTTGTGTTGCTCCATGAATAT 57.298 32.000 0.00 0.00 0.00 1.28
1231 1329 8.297470 ACTTGTGTTGCTCCATGAATATAATT 57.703 30.769 0.00 0.00 0.00 1.40
1232 1330 8.408601 ACTTGTGTTGCTCCATGAATATAATTC 58.591 33.333 0.00 0.00 0.00 2.17
1236 1334 7.380602 GTGTTGCTCCATGAATATAATTCTTGC 59.619 37.037 0.00 0.00 0.00 4.01
1238 1336 7.444629 TGCTCCATGAATATAATTCTTGCTC 57.555 36.000 0.00 3.33 0.00 4.26
1246 1344 7.923888 TGAATATAATTCTTGCTCTTGTGCTC 58.076 34.615 1.70 0.00 0.00 4.26
1254 1354 4.521639 TCTTGCTCTTGTGCTCATGATTTT 59.478 37.500 0.00 0.00 0.00 1.82
1255 1355 4.168922 TGCTCTTGTGCTCATGATTTTG 57.831 40.909 0.00 0.00 0.00 2.44
1256 1356 2.921754 GCTCTTGTGCTCATGATTTTGC 59.078 45.455 0.00 0.00 0.00 3.68
1258 1358 4.166523 CTCTTGTGCTCATGATTTTGCTG 58.833 43.478 0.00 0.00 0.00 4.41
1259 1359 2.357327 TGTGCTCATGATTTTGCTGC 57.643 45.000 0.00 0.00 0.00 5.25
1260 1360 1.890489 TGTGCTCATGATTTTGCTGCT 59.110 42.857 0.00 0.00 0.00 4.24
1261 1361 2.259618 GTGCTCATGATTTTGCTGCTG 58.740 47.619 0.00 0.00 0.00 4.41
1263 1363 2.297880 TGCTCATGATTTTGCTGCTGTT 59.702 40.909 0.00 0.00 0.00 3.16
1264 1364 2.666508 GCTCATGATTTTGCTGCTGTTG 59.333 45.455 0.00 0.00 0.00 3.33
1266 1366 4.304110 CTCATGATTTTGCTGCTGTTGTT 58.696 39.130 0.00 0.00 0.00 2.83
1276 1379 0.814457 TGCTGTTGTTGTGGTGGTTC 59.186 50.000 0.00 0.00 0.00 3.62
1346 1449 2.555199 GCCTTCGTCATCTACATGCTT 58.445 47.619 0.00 0.00 0.00 3.91
1389 1492 1.538687 GGCCAAGCAGGTGCAGATTT 61.539 55.000 0.00 0.00 45.16 2.17
1394 1497 3.066342 CCAAGCAGGTGCAGATTTATCAG 59.934 47.826 4.48 0.00 45.16 2.90
1396 1499 4.226427 AGCAGGTGCAGATTTATCAGAA 57.774 40.909 4.48 0.00 45.16 3.02
1485 1602 5.240891 TCTGATGATCTTTGGTGTTCAGTC 58.759 41.667 0.00 0.00 32.84 3.51
1509 1626 5.335661 CCTTAGTTTACATTTCTTGCGCCTT 60.336 40.000 4.18 0.00 0.00 4.35
1541 1663 3.206150 TCTCTTCTGGTGAAAACAGTGC 58.794 45.455 0.00 0.00 37.25 4.40
1577 1699 1.134946 GCAAAGTTTGTGCTCACAGGT 59.865 47.619 16.70 0.00 42.94 4.00
1592 1714 3.829601 TCACAGGTTTTTGAGTTTGGTGT 59.170 39.130 0.00 0.00 0.00 4.16
1607 1729 3.111853 TGGTGTCATGTCTCTGTTCAC 57.888 47.619 0.00 0.00 0.00 3.18
1686 1808 7.658982 TCATCCATGTGCTTATATTCAGTCTTC 59.341 37.037 0.00 0.00 0.00 2.87
1771 1893 3.447742 GTCAAGCTGAAACAAAAGGGTG 58.552 45.455 0.00 0.00 0.00 4.61
1837 1959 2.556559 GGTCAATTTGGAGGCCAAGGTA 60.557 50.000 5.01 0.00 44.84 3.08
1894 2016 1.736681 GAAGCTGAACAGACTGATGCC 59.263 52.381 10.08 0.00 0.00 4.40
1932 2054 7.096023 CGTTGGAAGATCAAGGAGTAAATATCG 60.096 40.741 0.00 0.00 35.32 2.92
2018 2202 4.959210 AGCTACTCCTCTGTTCATGTACAT 59.041 41.667 5.56 1.41 0.00 2.29
2072 2256 6.457528 GCACTCTTCCTGTAAATGTAATCAGC 60.458 42.308 0.00 0.00 0.00 4.26
2076 2260 7.847096 TCTTCCTGTAAATGTAATCAGCAGTA 58.153 34.615 0.00 0.00 0.00 2.74
2224 2408 5.704515 AGTCTCAGTCATTTGATGGTGAAAG 59.295 40.000 0.00 0.00 0.00 2.62
2225 2409 5.702670 GTCTCAGTCATTTGATGGTGAAAGA 59.297 40.000 0.00 0.00 0.00 2.52
2265 2451 4.572985 TTCTTCTGAAAACCAGCATGTG 57.427 40.909 0.00 0.00 42.62 3.21
2269 2455 2.618241 TCTGAAAACCAGCATGTGTGTC 59.382 45.455 0.00 0.00 42.62 3.67
2275 2461 1.074405 ACCAGCATGTGTGTCCATTCT 59.926 47.619 0.00 0.00 0.00 2.40
2288 2477 7.284261 TGTGTGTCCATTCTTGTTCTAATTCAA 59.716 33.333 0.00 0.00 0.00 2.69
2292 2481 7.860373 TGTCCATTCTTGTTCTAATTCAAAACG 59.140 33.333 0.00 0.00 0.00 3.60
2347 2536 4.217118 AGTTCAACATGGAGCAGAACATTC 59.783 41.667 15.38 0.00 40.63 2.67
2579 2768 3.674138 GCTACCATTTCTACGAACCGTCA 60.674 47.826 0.00 0.00 41.54 4.35
2659 2848 2.571653 TGCCTGGAAGTGCTACAGTTAT 59.428 45.455 0.00 0.00 32.37 1.89
2660 2849 2.939103 GCCTGGAAGTGCTACAGTTATG 59.061 50.000 0.00 0.00 0.00 1.90
2730 2923 7.669722 ACTTATTTTTCAGGCCTTCTGTTCATA 59.330 33.333 0.00 0.00 43.76 2.15
2731 2924 8.593945 TTATTTTTCAGGCCTTCTGTTCATAT 57.406 30.769 0.00 0.00 43.76 1.78
2795 2995 9.745323 GCAAAATTCAGCAAGATTTAATGTAAC 57.255 29.630 0.00 0.00 0.00 2.50
2842 3045 7.599353 TGTAGATAATATAGTGGGGAGAGGA 57.401 40.000 0.00 0.00 0.00 3.71
2867 3070 0.472044 TGCAGAAGTGTACAAGGGCA 59.528 50.000 0.00 0.78 0.00 5.36
3135 3367 5.641209 CAGAGTGATCGACCTGAAGATTTTT 59.359 40.000 0.00 0.00 0.00 1.94
3154 3386 2.449548 GTCAGTGACACTGGCGATG 58.550 57.895 30.39 9.52 45.94 3.84
3156 3388 0.038251 TCAGTGACACTGGCGATGAC 60.038 55.000 30.39 0.00 45.94 3.06
3158 3390 0.610174 AGTGACACTGGCGATGACAT 59.390 50.000 7.47 0.00 0.00 3.06
3159 3391 1.002430 AGTGACACTGGCGATGACATT 59.998 47.619 7.47 0.00 0.00 2.71
3160 3392 1.806542 GTGACACTGGCGATGACATTT 59.193 47.619 0.00 0.00 0.00 2.32
3161 3393 2.226437 GTGACACTGGCGATGACATTTT 59.774 45.455 0.00 0.00 0.00 1.82
3187 3419 1.839994 CTGCAGGGAATAGTGGGAAGA 59.160 52.381 5.57 0.00 0.00 2.87
3199 3431 1.065126 GTGGGAAGATCCTTGAGTGGG 60.065 57.143 0.00 0.00 36.57 4.61
3300 3532 2.006772 CGACATCAAGGCCGCTAAC 58.993 57.895 0.00 0.00 0.00 2.34
3336 3568 4.705110 TGATTCTGAACCTCAGGTGAAA 57.295 40.909 0.00 0.00 44.39 2.69
3340 3572 5.623956 TTCTGAACCTCAGGTGAAACTAA 57.376 39.130 0.00 0.00 44.39 2.24
3378 3617 8.623310 TTTGAGTCAATAAAAACCGAACTTTC 57.377 30.769 6.36 0.00 0.00 2.62
3382 3621 7.075741 AGTCAATAAAAACCGAACTTTCATCG 58.924 34.615 0.00 0.00 39.92 3.84
3419 3658 5.913137 TCACACCAAACAACAATCTTCTT 57.087 34.783 0.00 0.00 0.00 2.52
3476 3732 5.601583 ATGCCATGCAAGTAATGAAATGA 57.398 34.783 0.00 0.00 43.62 2.57
3479 3735 4.802039 GCCATGCAAGTAATGAAATGACAG 59.198 41.667 0.00 0.00 30.26 3.51
3521 3778 9.277783 AGTGATGTGATTATTTAGTAAGATGGC 57.722 33.333 0.00 0.00 0.00 4.40
3699 3956 6.765915 ATATTTGCCTTTGGAGTTCTTCTC 57.234 37.500 0.00 0.00 42.07 2.87
3960 4218 2.994995 AGGATGGTCACCGTCGCA 60.995 61.111 10.10 0.00 40.24 5.10
3963 4221 2.202743 ATGGTCACCGTCGCATCG 60.203 61.111 0.00 0.00 0.00 3.84
4025 4283 3.576982 TCCGAGGTACCCATTCATCATAC 59.423 47.826 8.74 0.00 0.00 2.39
4051 4309 8.685838 TTGCTAGGTTTAAGTTACTGATGTTT 57.314 30.769 0.00 0.00 0.00 2.83
4132 4392 1.919600 ATGAGTGCTTGGAGGAGCCC 61.920 60.000 0.00 0.00 42.01 5.19
4251 4516 1.262417 TGGTGTCGATGTGGCTTCTA 58.738 50.000 0.00 0.00 0.00 2.10
4344 4609 4.041723 ACTATGTGCTTTCAAAACGTTGC 58.958 39.130 0.00 0.00 34.50 4.17
4356 4621 0.827368 AACGTTGCCATGGGTTGTTT 59.173 45.000 15.13 0.00 0.00 2.83
4359 4624 1.068434 CGTTGCCATGGGTTGTTTTCT 59.932 47.619 15.13 0.00 0.00 2.52
4375 4640 3.972276 CTAGCTCCGCTCCTCCGC 61.972 72.222 0.00 0.00 40.44 5.54
4386 4663 1.269831 GCTCCTCCGCGATGATAAACT 60.270 52.381 8.23 0.00 0.00 2.66
4409 4690 9.651913 AACTGATTGAGTAAAATGTTTTGTGTT 57.348 25.926 1.16 0.00 33.09 3.32
4410 4691 9.086336 ACTGATTGAGTAAAATGTTTTGTGTTG 57.914 29.630 1.16 0.00 30.86 3.33
4419 4700 1.895798 TGTTTTGTGTTGCCTTCCACA 59.104 42.857 0.00 0.00 39.68 4.17
4421 4702 0.459489 TTTGTGTTGCCTTCCACAGC 59.541 50.000 0.00 0.00 42.11 4.40
4424 4705 1.827789 TGTTGCCTTCCACAGCACC 60.828 57.895 0.00 0.00 39.10 5.01
4428 4709 1.673665 GCCTTCCACAGCACCAGAG 60.674 63.158 0.00 0.00 0.00 3.35
4431 4712 0.673022 CTTCCACAGCACCAGAGAGC 60.673 60.000 0.00 0.00 0.00 4.09
4435 4716 1.311859 CACAGCACCAGAGAGCAAAA 58.688 50.000 0.00 0.00 31.08 2.44
4436 4717 1.677576 CACAGCACCAGAGAGCAAAAA 59.322 47.619 0.00 0.00 31.08 1.94
4476 4757 4.495422 ACTTGAAGACATGATCACCGTAC 58.505 43.478 0.00 0.00 0.00 3.67
4481 4763 4.265904 AGACATGATCACCGTACAAACA 57.734 40.909 0.00 0.00 0.00 2.83
4485 4767 4.759693 ACATGATCACCGTACAAACATGTT 59.240 37.500 4.92 4.92 42.23 2.71
4487 4769 6.428465 ACATGATCACCGTACAAACATGTTAA 59.572 34.615 12.39 0.00 42.23 2.01
4488 4770 6.230849 TGATCACCGTACAAACATGTTAAC 57.769 37.500 12.39 9.70 0.00 2.01
4496 4778 8.192110 ACCGTACAAACATGTTAACTGAAAAAT 58.808 29.630 12.39 0.00 0.00 1.82
4523 4805 7.890127 AGATAACCAAGAGAATTTCCAATCACA 59.110 33.333 0.00 0.00 0.00 3.58
4524 4806 5.972107 ACCAAGAGAATTTCCAATCACAG 57.028 39.130 0.00 0.00 0.00 3.66
4526 4808 5.835280 ACCAAGAGAATTTCCAATCACAGTT 59.165 36.000 0.00 0.00 0.00 3.16
4527 4809 6.324770 ACCAAGAGAATTTCCAATCACAGTTT 59.675 34.615 0.00 0.00 0.00 2.66
4528 4810 6.643770 CCAAGAGAATTTCCAATCACAGTTTG 59.356 38.462 0.00 0.00 0.00 2.93
4529 4811 6.966534 AGAGAATTTCCAATCACAGTTTGT 57.033 33.333 0.00 0.00 0.00 2.83
4530 4812 8.352201 CAAGAGAATTTCCAATCACAGTTTGTA 58.648 33.333 0.00 0.00 0.00 2.41
4531 4813 8.463930 AGAGAATTTCCAATCACAGTTTGTAA 57.536 30.769 0.00 0.00 0.00 2.41
4532 4814 8.912988 AGAGAATTTCCAATCACAGTTTGTAAA 58.087 29.630 0.00 0.00 0.00 2.01
4536 4818 8.647143 ATTTCCAATCACAGTTTGTAAACAAG 57.353 30.769 9.85 4.76 41.30 3.16
4538 4820 7.026631 TCCAATCACAGTTTGTAAACAAGAG 57.973 36.000 9.85 1.90 41.30 2.85
4542 4824 8.344831 CAATCACAGTTTGTAAACAAGAGATCA 58.655 33.333 9.85 0.00 41.30 2.92
4543 4825 7.857734 TCACAGTTTGTAAACAAGAGATCAA 57.142 32.000 9.85 0.00 41.30 2.57
4544 4826 8.275015 TCACAGTTTGTAAACAAGAGATCAAA 57.725 30.769 9.85 0.00 41.30 2.69
4545 4827 8.735315 TCACAGTTTGTAAACAAGAGATCAAAA 58.265 29.630 9.85 0.00 41.30 2.44
4546 4828 9.520204 CACAGTTTGTAAACAAGAGATCAAAAT 57.480 29.630 9.85 0.00 41.30 1.82
4627 4923 9.674824 CAATTCAGAGGTATTTATCTGCAATTC 57.325 33.333 0.00 0.00 42.20 2.17
4628 4924 8.985315 ATTCAGAGGTATTTATCTGCAATTCA 57.015 30.769 0.00 0.00 42.20 2.57
4630 4926 7.568349 TCAGAGGTATTTATCTGCAATTCAGT 58.432 34.615 0.00 0.00 42.20 3.41
4631 4927 8.049117 TCAGAGGTATTTATCTGCAATTCAGTT 58.951 33.333 0.00 1.30 42.20 3.16
4632 4928 8.341173 CAGAGGTATTTATCTGCAATTCAGTTC 58.659 37.037 0.00 0.00 43.32 3.01
4635 4931 6.914757 GGTATTTATCTGCAATTCAGTTCAGC 59.085 38.462 0.00 0.00 43.32 4.26
4636 4932 4.970662 TTATCTGCAATTCAGTTCAGCC 57.029 40.909 0.00 0.00 43.32 4.85
4637 4933 2.574006 TCTGCAATTCAGTTCAGCCT 57.426 45.000 0.00 0.00 43.32 4.58
4638 4934 2.430465 TCTGCAATTCAGTTCAGCCTC 58.570 47.619 0.00 0.00 43.32 4.70
4640 4936 3.261643 TCTGCAATTCAGTTCAGCCTCTA 59.738 43.478 0.00 0.00 43.32 2.43
4641 4937 4.005650 CTGCAATTCAGTTCAGCCTCTAA 58.994 43.478 0.00 0.00 38.02 2.10
4655 4969 2.169352 GCCTCTAATCCTTGTGAGCAGA 59.831 50.000 0.00 0.00 0.00 4.26
4657 4971 4.187694 CCTCTAATCCTTGTGAGCAGAAC 58.812 47.826 0.00 0.00 0.00 3.01
4663 4977 4.370364 TCCTTGTGAGCAGAACAAAAAC 57.630 40.909 0.00 0.00 37.10 2.43
4932 5254 1.010125 CAACGTTCGCACCACCTTG 60.010 57.895 0.00 0.00 0.00 3.61
4939 5262 2.116125 GCACCACCTTGAAGCCCT 59.884 61.111 0.00 0.00 0.00 5.19
5085 5414 6.484364 TGCTGATGGAATGAATAGTCTGTA 57.516 37.500 0.00 0.00 0.00 2.74
5086 5415 6.283694 TGCTGATGGAATGAATAGTCTGTAC 58.716 40.000 0.00 0.00 0.00 2.90
5115 5444 2.241722 CGTTGCCTTTTGCTATTGTCG 58.758 47.619 0.00 0.00 42.00 4.35
5116 5445 2.350388 CGTTGCCTTTTGCTATTGTCGT 60.350 45.455 0.00 0.00 42.00 4.34
5167 5496 2.608090 GCCCGTGAAGCTAATAAGTGAC 59.392 50.000 0.00 0.00 0.00 3.67
5210 5539 4.939509 AAGTGCATAATTCACGTGTACC 57.060 40.909 16.51 0.00 39.31 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 6.820656 ACTTCATATTGTGTTGATGGAGAGAC 59.179 38.462 0.00 0.00 31.60 3.36
87 88 9.440773 TTGTACGTTCTCTATCTTGAGTAGTAA 57.559 33.333 0.00 0.00 35.68 2.24
102 103 4.151798 GCATGAAGCTTTTGTACGTTCTC 58.848 43.478 0.00 0.00 41.15 2.87
103 104 3.563808 TGCATGAAGCTTTTGTACGTTCT 59.436 39.130 0.00 0.00 45.94 3.01
106 107 3.980646 TTGCATGAAGCTTTTGTACGT 57.019 38.095 0.00 0.00 45.94 3.57
108 109 5.473039 AGGAATTGCATGAAGCTTTTGTAC 58.527 37.500 0.00 0.00 45.94 2.90
113 114 4.877378 TGAAGGAATTGCATGAAGCTTT 57.123 36.364 0.00 0.00 45.94 3.51
116 117 7.037438 TCTTTATTGAAGGAATTGCATGAAGC 58.963 34.615 0.00 0.00 38.74 3.86
117 118 8.464404 TCTCTTTATTGAAGGAATTGCATGAAG 58.536 33.333 0.00 0.00 35.98 3.02
118 119 8.246180 GTCTCTTTATTGAAGGAATTGCATGAA 58.754 33.333 0.00 0.00 35.98 2.57
120 121 6.690098 CGTCTCTTTATTGAAGGAATTGCATG 59.310 38.462 0.00 0.00 35.98 4.06
121 122 6.375455 ACGTCTCTTTATTGAAGGAATTGCAT 59.625 34.615 0.00 0.00 35.98 3.96
122 123 5.705441 ACGTCTCTTTATTGAAGGAATTGCA 59.295 36.000 0.00 0.00 35.98 4.08
123 124 6.183309 ACGTCTCTTTATTGAAGGAATTGC 57.817 37.500 0.00 0.00 35.98 3.56
125 126 5.063564 GCGACGTCTCTTTATTGAAGGAATT 59.936 40.000 14.70 0.00 35.98 2.17
127 128 3.924686 GCGACGTCTCTTTATTGAAGGAA 59.075 43.478 14.70 0.00 35.98 3.36
128 129 3.057104 TGCGACGTCTCTTTATTGAAGGA 60.057 43.478 14.70 0.00 35.98 3.36
130 131 4.327357 ACATGCGACGTCTCTTTATTGAAG 59.673 41.667 14.70 0.00 36.67 3.02
131 132 4.242475 ACATGCGACGTCTCTTTATTGAA 58.758 39.130 14.70 0.00 0.00 2.69
132 133 3.845178 ACATGCGACGTCTCTTTATTGA 58.155 40.909 14.70 0.00 0.00 2.57
133 134 4.561213 TGTACATGCGACGTCTCTTTATTG 59.439 41.667 14.70 4.27 0.00 1.90
134 135 4.740268 TGTACATGCGACGTCTCTTTATT 58.260 39.130 14.70 0.00 0.00 1.40
136 137 3.835378 TGTACATGCGACGTCTCTTTA 57.165 42.857 14.70 0.00 0.00 1.85
137 138 2.717580 TGTACATGCGACGTCTCTTT 57.282 45.000 14.70 0.00 0.00 2.52
139 140 1.728179 CGTTGTACATGCGACGTCTCT 60.728 52.381 14.70 0.00 40.35 3.10
141 142 2.720688 CGTTGTACATGCGACGTCT 58.279 52.632 14.70 0.00 40.35 4.18
155 156 7.906611 TTGATTGAAGTTGACAATTACGTTG 57.093 32.000 0.00 0.00 43.64 4.10
156 157 8.349245 TCATTGATTGAAGTTGACAATTACGTT 58.651 29.630 0.00 0.00 37.96 3.99
157 158 7.870826 TCATTGATTGAAGTTGACAATTACGT 58.129 30.769 0.00 0.00 37.96 3.57
158 159 8.629986 GTTCATTGATTGAAGTTGACAATTACG 58.370 33.333 0.00 0.00 44.89 3.18
159 160 8.629986 CGTTCATTGATTGAAGTTGACAATTAC 58.370 33.333 0.00 0.00 44.89 1.89
160 161 7.325821 GCGTTCATTGATTGAAGTTGACAATTA 59.674 33.333 0.00 0.00 44.89 1.40
163 164 4.975502 GCGTTCATTGATTGAAGTTGACAA 59.024 37.500 0.00 0.00 44.89 3.18
164 165 4.536065 GCGTTCATTGATTGAAGTTGACA 58.464 39.130 0.00 0.00 44.89 3.58
166 167 3.364864 CGGCGTTCATTGATTGAAGTTGA 60.365 43.478 0.00 0.00 44.89 3.18
168 169 2.095263 CCGGCGTTCATTGATTGAAGTT 60.095 45.455 6.01 0.00 44.89 2.66
169 170 1.468520 CCGGCGTTCATTGATTGAAGT 59.531 47.619 6.01 0.00 44.89 3.01
170 171 1.737236 TCCGGCGTTCATTGATTGAAG 59.263 47.619 6.01 0.00 44.89 3.02
171 172 1.466950 GTCCGGCGTTCATTGATTGAA 59.533 47.619 6.01 0.00 42.09 2.69
172 173 1.083489 GTCCGGCGTTCATTGATTGA 58.917 50.000 6.01 0.00 0.00 2.57
173 174 0.098728 GGTCCGGCGTTCATTGATTG 59.901 55.000 6.01 0.00 0.00 2.67
179 180 0.683504 ACTCTAGGTCCGGCGTTCAT 60.684 55.000 6.01 0.00 0.00 2.57
181 182 0.245813 AAACTCTAGGTCCGGCGTTC 59.754 55.000 6.01 0.00 0.00 3.95
182 183 0.245813 GAAACTCTAGGTCCGGCGTT 59.754 55.000 6.01 0.00 0.00 4.84
183 184 0.896940 TGAAACTCTAGGTCCGGCGT 60.897 55.000 6.01 0.00 0.00 5.68
185 186 0.108281 GGTGAAACTCTAGGTCCGGC 60.108 60.000 0.00 0.00 36.74 6.13
187 188 0.535797 GGGGTGAAACTCTAGGTCCG 59.464 60.000 0.00 0.00 37.58 4.79
188 189 1.555533 CAGGGGTGAAACTCTAGGTCC 59.444 57.143 0.00 0.00 37.58 4.46
190 191 0.984995 GCAGGGGTGAAACTCTAGGT 59.015 55.000 0.00 0.00 37.58 3.08
191 192 0.984230 TGCAGGGGTGAAACTCTAGG 59.016 55.000 0.00 0.00 37.58 3.02
192 193 2.039084 AGTTGCAGGGGTGAAACTCTAG 59.961 50.000 0.00 0.00 37.58 2.43
193 194 2.038557 GAGTTGCAGGGGTGAAACTCTA 59.961 50.000 16.10 0.00 43.28 2.43
194 195 0.846693 AGTTGCAGGGGTGAAACTCT 59.153 50.000 0.00 0.00 37.58 3.24
197 198 0.534203 TCGAGTTGCAGGGGTGAAAC 60.534 55.000 0.00 0.00 0.00 2.78
198 199 0.250295 CTCGAGTTGCAGGGGTGAAA 60.250 55.000 3.62 0.00 0.00 2.69
200 201 3.059982 CTCGAGTTGCAGGGGTGA 58.940 61.111 3.62 0.00 0.00 4.02
202 203 4.021925 GGCTCGAGTTGCAGGGGT 62.022 66.667 15.13 0.00 0.00 4.95
203 204 4.785453 GGGCTCGAGTTGCAGGGG 62.785 72.222 15.13 0.00 0.00 4.79
204 205 4.785453 GGGGCTCGAGTTGCAGGG 62.785 72.222 15.13 0.00 0.00 4.45
207 208 4.704833 GCAGGGGCTCGAGTTGCA 62.705 66.667 15.13 0.00 36.96 4.08
209 210 2.743928 GTGCAGGGGCTCGAGTTG 60.744 66.667 15.13 8.88 41.91 3.16
210 211 4.021925 GGTGCAGGGGCTCGAGTT 62.022 66.667 15.13 0.00 41.91 3.01
212 213 2.303549 CTAAGGTGCAGGGGCTCGAG 62.304 65.000 8.45 8.45 41.91 4.04
213 214 2.284331 TAAGGTGCAGGGGCTCGA 60.284 61.111 0.00 0.00 41.91 4.04
214 215 2.187946 CTAAGGTGCAGGGGCTCG 59.812 66.667 0.00 0.00 41.91 5.03
215 216 2.124529 GCTAAGGTGCAGGGGCTC 60.125 66.667 0.00 0.00 41.91 4.70
216 217 2.276309 GATGCTAAGGTGCAGGGGCT 62.276 60.000 0.00 0.00 46.71 5.19
218 219 0.749454 GTGATGCTAAGGTGCAGGGG 60.749 60.000 0.00 0.00 46.71 4.79
220 221 1.470098 GTTGTGATGCTAAGGTGCAGG 59.530 52.381 0.00 0.00 46.71 4.85
224 272 3.120199 CCGAAAGTTGTGATGCTAAGGTG 60.120 47.826 0.00 0.00 0.00 4.00
234 282 0.893270 CCCATGGCCGAAAGTTGTGA 60.893 55.000 6.09 0.00 0.00 3.58
235 283 0.893270 TCCCATGGCCGAAAGTTGTG 60.893 55.000 6.09 0.00 0.00 3.33
243 291 1.829096 CATTGCATCCCATGGCCGA 60.829 57.895 6.09 0.00 0.00 5.54
251 299 1.380246 TGGCCTGACATTGCATCCC 60.380 57.895 3.32 0.00 0.00 3.85
268 318 2.169789 CGTTCCATCGCCAGAGCTG 61.170 63.158 0.00 0.00 36.60 4.24
269 319 2.185350 CGTTCCATCGCCAGAGCT 59.815 61.111 0.00 0.00 36.60 4.09
270 320 2.167861 GTCGTTCCATCGCCAGAGC 61.168 63.158 0.00 0.00 0.00 4.09
290 340 2.536997 ATACAGCCAACCACCGCCTC 62.537 60.000 0.00 0.00 0.00 4.70
292 342 0.393267 TAATACAGCCAACCACCGCC 60.393 55.000 0.00 0.00 0.00 6.13
347 398 9.138596 GTCTATAGTGGAATCTCTAAAAGGTCT 57.861 37.037 0.00 0.00 0.00 3.85
348 399 9.138596 AGTCTATAGTGGAATCTCTAAAAGGTC 57.861 37.037 0.00 0.00 0.00 3.85
349 400 8.919145 CAGTCTATAGTGGAATCTCTAAAAGGT 58.081 37.037 0.00 0.00 0.00 3.50
351 402 8.417106 TGCAGTCTATAGTGGAATCTCTAAAAG 58.583 37.037 0.00 0.00 0.00 2.27
352 403 8.306313 TGCAGTCTATAGTGGAATCTCTAAAA 57.694 34.615 0.00 0.00 0.00 1.52
357 408 7.123397 TCCATATGCAGTCTATAGTGGAATCTC 59.877 40.741 0.00 0.00 32.02 2.75
358 409 6.956435 TCCATATGCAGTCTATAGTGGAATCT 59.044 38.462 0.00 0.00 32.02 2.40
359 410 7.093552 ACTCCATATGCAGTCTATAGTGGAATC 60.094 40.741 0.00 0.00 34.42 2.52
363 414 5.991933 ACTCCATATGCAGTCTATAGTGG 57.008 43.478 0.00 0.00 0.00 4.00
364 415 9.935241 ATTTTACTCCATATGCAGTCTATAGTG 57.065 33.333 1.57 0.00 0.00 2.74
372 423 4.512944 CGCTCATTTTACTCCATATGCAGT 59.487 41.667 4.37 4.37 0.00 4.40
375 426 5.673337 TTCGCTCATTTTACTCCATATGC 57.327 39.130 0.00 0.00 0.00 3.14
376 427 7.425577 TGATTCGCTCATTTTACTCCATATG 57.574 36.000 0.00 0.00 0.00 1.78
377 428 7.498900 TGTTGATTCGCTCATTTTACTCCATAT 59.501 33.333 0.00 0.00 32.72 1.78
383 434 5.934625 AGAGTGTTGATTCGCTCATTTTACT 59.065 36.000 9.37 0.00 44.43 2.24
384 435 6.170675 AGAGTGTTGATTCGCTCATTTTAC 57.829 37.500 9.37 0.00 44.43 2.01
385 436 7.899178 TTAGAGTGTTGATTCGCTCATTTTA 57.101 32.000 9.37 0.00 44.43 1.52
387 438 6.428159 ACTTTAGAGTGTTGATTCGCTCATTT 59.572 34.615 9.37 0.00 44.43 2.32
391 442 6.531948 ACATACTTTAGAGTGTTGATTCGCTC 59.468 38.462 0.00 0.00 42.95 5.03
392 443 6.398918 ACATACTTTAGAGTGTTGATTCGCT 58.601 36.000 0.00 0.00 36.60 4.93
393 444 6.648725 ACATACTTTAGAGTGTTGATTCGC 57.351 37.500 0.00 0.00 36.60 4.70
394 445 8.912787 ACTACATACTTTAGAGTGTTGATTCG 57.087 34.615 0.00 0.00 36.60 3.34
395 446 9.303537 GGACTACATACTTTAGAGTGTTGATTC 57.696 37.037 0.00 0.00 36.60 2.52
398 449 7.770366 TGGACTACATACTTTAGAGTGTTGA 57.230 36.000 0.00 0.00 36.60 3.18
399 450 9.737427 CTATGGACTACATACTTTAGAGTGTTG 57.263 37.037 0.00 0.00 41.03 3.33
404 455 8.693120 TCCACTATGGACTACATACTTTAGAG 57.307 38.462 0.00 0.00 42.67 2.43
419 470 8.380742 AGAACTTTTAGAGATTCCACTATGGA 57.619 34.615 0.00 0.00 46.61 3.41
449 500 9.937175 GCAACTGCCTTTTATTATACTCTAAAG 57.063 33.333 0.00 0.00 34.31 1.85
450 501 9.681062 AGCAACTGCCTTTTATTATACTCTAAA 57.319 29.630 0.00 0.00 43.38 1.85
452 503 8.482943 TCAGCAACTGCCTTTTATTATACTCTA 58.517 33.333 0.00 0.00 43.38 2.43
453 504 7.338710 TCAGCAACTGCCTTTTATTATACTCT 58.661 34.615 0.00 0.00 43.38 3.24
456 507 7.707104 ACATCAGCAACTGCCTTTTATTATAC 58.293 34.615 0.00 0.00 43.38 1.47
457 508 7.880160 ACATCAGCAACTGCCTTTTATTATA 57.120 32.000 0.00 0.00 43.38 0.98
459 510 7.695480 TTACATCAGCAACTGCCTTTTATTA 57.305 32.000 0.00 0.00 43.38 0.98
462 513 6.588719 ATTTACATCAGCAACTGCCTTTTA 57.411 33.333 0.00 0.00 43.38 1.52
463 514 4.935352 TTTACATCAGCAACTGCCTTTT 57.065 36.364 0.00 0.00 43.38 2.27
464 515 5.232463 CAATTTACATCAGCAACTGCCTTT 58.768 37.500 0.00 0.00 43.38 3.11
465 516 4.813027 CAATTTACATCAGCAACTGCCTT 58.187 39.130 0.00 0.00 43.38 4.35
466 517 3.367703 GCAATTTACATCAGCAACTGCCT 60.368 43.478 0.00 0.00 43.38 4.75
467 518 2.925563 GCAATTTACATCAGCAACTGCC 59.074 45.455 0.00 0.00 43.38 4.85
468 519 3.841643 AGCAATTTACATCAGCAACTGC 58.158 40.909 0.00 0.00 42.49 4.40
530 588 7.370383 CCATCTGTGGTGCATTTTATATAACC 58.630 38.462 0.00 0.00 40.83 2.85
549 609 5.471456 GGTAACCAATCTAATCTGCCATCTG 59.529 44.000 0.00 0.00 0.00 2.90
555 615 5.979517 GCATTTGGTAACCAATCTAATCTGC 59.020 40.000 0.00 0.00 43.55 4.26
566 626 1.247419 CCTGCGGCATTTGGTAACCA 61.247 55.000 1.75 0.00 0.00 3.67
744 807 1.021390 GCGACCACCATGGAACTCAG 61.021 60.000 21.47 6.14 40.96 3.35
952 1041 3.177884 TTCCCAGGCAGCACCACT 61.178 61.111 0.00 0.00 43.14 4.00
953 1042 2.674380 CTTCCCAGGCAGCACCAC 60.674 66.667 0.00 0.00 43.14 4.16
955 1044 2.900671 GATCCTTCCCAGGCAGCACC 62.901 65.000 0.00 0.00 40.58 5.01
961 1050 1.627297 AACCTCGATCCTTCCCAGGC 61.627 60.000 0.00 0.00 40.58 4.85
962 1051 0.179000 CAACCTCGATCCTTCCCAGG 59.821 60.000 0.00 0.00 42.50 4.45
963 1052 0.179000 CCAACCTCGATCCTTCCCAG 59.821 60.000 0.00 0.00 0.00 4.45
964 1053 0.546747 ACCAACCTCGATCCTTCCCA 60.547 55.000 0.00 0.00 0.00 4.37
965 1054 1.492764 TACCAACCTCGATCCTTCCC 58.507 55.000 0.00 0.00 0.00 3.97
966 1055 2.158943 CCTTACCAACCTCGATCCTTCC 60.159 54.545 0.00 0.00 0.00 3.46
967 1056 2.158943 CCCTTACCAACCTCGATCCTTC 60.159 54.545 0.00 0.00 0.00 3.46
968 1057 1.838077 CCCTTACCAACCTCGATCCTT 59.162 52.381 0.00 0.00 0.00 3.36
969 1058 1.497161 CCCTTACCAACCTCGATCCT 58.503 55.000 0.00 0.00 0.00 3.24
979 1068 2.384375 TGTCTAGACCTCCCCTTACCAA 59.616 50.000 20.11 0.00 0.00 3.67
983 1072 2.863238 TCCATGTCTAGACCTCCCCTTA 59.137 50.000 20.11 0.00 0.00 2.69
984 1073 1.651770 TCCATGTCTAGACCTCCCCTT 59.348 52.381 20.11 0.00 0.00 3.95
994 1083 2.477825 CTCAATGGCGTCCATGTCTAG 58.522 52.381 11.38 4.63 44.40 2.43
1058 1156 4.274008 TGGAGCCAAGCAGCAGCA 62.274 61.111 3.17 0.00 45.49 4.41
1059 1157 3.441290 CTGGAGCCAAGCAGCAGC 61.441 66.667 0.00 0.00 42.56 5.25
1060 1158 2.553765 ATCCTGGAGCCAAGCAGCAG 62.554 60.000 1.52 0.00 34.23 4.24
1061 1159 1.273986 TATCCTGGAGCCAAGCAGCA 61.274 55.000 1.52 0.00 34.23 4.41
1062 1160 0.817229 GTATCCTGGAGCCAAGCAGC 60.817 60.000 1.52 0.00 0.00 5.25
1063 1161 0.835941 AGTATCCTGGAGCCAAGCAG 59.164 55.000 1.52 0.00 0.00 4.24
1074 1172 1.226974 CACGCCGACCAGTATCCTG 60.227 63.158 0.00 0.00 38.50 3.86
1110 1208 2.508887 GACAGCAGCTCGGAGCAG 60.509 66.667 29.88 23.54 45.56 4.24
1146 1244 2.281484 GAGTCGTTGGGCTTGGCA 60.281 61.111 0.00 0.00 0.00 4.92
1176 1274 3.556213 CCAGACGGTTACCAAGAACATGA 60.556 47.826 0.00 0.00 0.00 3.07
1182 1280 0.759959 TTGCCAGACGGTTACCAAGA 59.240 50.000 1.13 0.00 33.28 3.02
1194 1292 4.099266 AGCAACACAAGTAAAATTGCCAGA 59.901 37.500 3.77 0.00 45.36 3.86
1198 1296 4.367450 TGGAGCAACACAAGTAAAATTGC 58.633 39.130 0.00 0.00 44.74 3.56
1218 1316 7.594015 GCACAAGAGCAAGAATTATATTCATGG 59.406 37.037 6.73 0.00 0.00 3.66
1223 1321 7.870509 TGAGCACAAGAGCAAGAATTATATT 57.129 32.000 0.00 0.00 36.85 1.28
1227 1325 5.247862 TCATGAGCACAAGAGCAAGAATTA 58.752 37.500 0.00 0.00 36.85 1.40
1231 1329 2.845363 TCATGAGCACAAGAGCAAGA 57.155 45.000 0.00 0.00 36.85 3.02
1232 1330 4.436242 AAATCATGAGCACAAGAGCAAG 57.564 40.909 0.09 0.00 36.85 4.01
1236 1334 4.166523 CAGCAAAATCATGAGCACAAGAG 58.833 43.478 0.09 0.00 0.00 2.85
1238 1336 2.666508 GCAGCAAAATCATGAGCACAAG 59.333 45.455 0.09 0.00 0.00 3.16
1246 1344 3.805422 ACAACAACAGCAGCAAAATCATG 59.195 39.130 0.00 0.00 0.00 3.07
1254 1354 1.665264 CCACCACAACAACAGCAGCA 61.665 55.000 0.00 0.00 0.00 4.41
1255 1355 1.066257 CCACCACAACAACAGCAGC 59.934 57.895 0.00 0.00 0.00 5.25
1256 1356 0.817013 AACCACCACAACAACAGCAG 59.183 50.000 0.00 0.00 0.00 4.24
1258 1358 0.248458 CGAACCACCACAACAACAGC 60.248 55.000 0.00 0.00 0.00 4.40
1259 1359 1.091537 ACGAACCACCACAACAACAG 58.908 50.000 0.00 0.00 0.00 3.16
1260 1360 0.805614 CACGAACCACCACAACAACA 59.194 50.000 0.00 0.00 0.00 3.33
1261 1361 0.099791 CCACGAACCACCACAACAAC 59.900 55.000 0.00 0.00 0.00 3.32
1263 1363 2.115911 GCCACGAACCACCACAACA 61.116 57.895 0.00 0.00 0.00 3.33
1264 1364 2.719354 GCCACGAACCACCACAAC 59.281 61.111 0.00 0.00 0.00 3.32
1266 1366 4.920112 CGGCCACGAACCACCACA 62.920 66.667 2.24 0.00 44.60 4.17
1346 1449 0.475632 ATGTCTCCACCAACTCCCCA 60.476 55.000 0.00 0.00 0.00 4.96
1389 1492 9.950680 GAACTGAAATTGTCTTGTTTTCTGATA 57.049 29.630 8.02 0.00 34.41 2.15
1394 1497 6.531240 TGCAGAACTGAAATTGTCTTGTTTTC 59.469 34.615 5.97 0.00 0.00 2.29
1396 1499 5.964758 TGCAGAACTGAAATTGTCTTGTTT 58.035 33.333 5.97 0.00 0.00 2.83
1441 1544 5.805486 CAGAAGCCATGTTCAGAAATGAATG 59.195 40.000 0.00 0.42 0.00 2.67
1485 1602 4.156008 AGGCGCAAGAAATGTAAACTAAGG 59.844 41.667 10.83 0.00 43.02 2.69
1515 1632 3.625764 TGTTTTCACCAGAAGAGAAACGG 59.374 43.478 0.00 0.00 34.71 4.44
1516 1633 4.332819 ACTGTTTTCACCAGAAGAGAAACG 59.667 41.667 0.00 0.00 34.71 3.60
1517 1634 5.573146 CACTGTTTTCACCAGAAGAGAAAC 58.427 41.667 0.00 0.00 34.71 2.78
1541 1663 0.746063 TTGCTTCCAAGTTGCCACTG 59.254 50.000 0.00 0.00 31.60 3.66
1574 1696 4.466015 ACATGACACCAAACTCAAAAACCT 59.534 37.500 0.00 0.00 0.00 3.50
1577 1699 5.652014 AGAGACATGACACCAAACTCAAAAA 59.348 36.000 0.00 0.00 0.00 1.94
1592 1714 3.552890 CGAACAGGTGAACAGAGACATGA 60.553 47.826 0.00 0.00 0.00 3.07
1618 1740 1.764134 CCCAGGCCACCGTACTAATTA 59.236 52.381 5.01 0.00 0.00 1.40
1686 1808 1.276989 AGTCCCAATTTGGCAGCATTG 59.723 47.619 10.10 12.35 35.79 2.82
1731 1853 6.310711 GCTTGACGCAGAAGTAGTAATAAACT 59.689 38.462 0.00 0.00 39.40 2.66
1732 1854 6.310711 AGCTTGACGCAGAAGTAGTAATAAAC 59.689 38.462 0.00 0.00 42.61 2.01
1733 1855 6.310467 CAGCTTGACGCAGAAGTAGTAATAAA 59.690 38.462 0.00 0.00 42.61 1.40
1734 1856 5.805486 CAGCTTGACGCAGAAGTAGTAATAA 59.195 40.000 0.00 0.00 42.61 1.40
1735 1857 5.124936 TCAGCTTGACGCAGAAGTAGTAATA 59.875 40.000 0.00 0.00 42.61 0.98
1736 1858 4.082190 TCAGCTTGACGCAGAAGTAGTAAT 60.082 41.667 0.00 0.00 42.61 1.89
1742 1864 1.599542 GTTTCAGCTTGACGCAGAAGT 59.400 47.619 0.00 0.00 43.65 3.01
1753 1875 3.960102 TCATCACCCTTTTGTTTCAGCTT 59.040 39.130 0.00 0.00 0.00 3.74
1771 1893 8.663911 CAGAGAAAACAGAGGATAAAACTCATC 58.336 37.037 0.00 0.00 37.43 2.92
1837 1959 1.749634 GGAATGCTTGAGCTGCAGATT 59.250 47.619 20.43 6.04 44.04 2.40
1894 2016 5.926542 TGATCTTCCAACGACTAGAAACTTG 59.073 40.000 0.00 0.00 0.00 3.16
1990 2171 6.344500 ACATGAACAGAGGAGTAGCTTATTG 58.656 40.000 0.00 0.00 0.00 1.90
2043 2227 7.759489 TTACATTTACAGGAAGAGTGCAAAT 57.241 32.000 0.00 0.00 0.00 2.32
2072 2256 8.162878 AGTGATTCCTGAAATGCATAATACTG 57.837 34.615 0.00 0.00 0.00 2.74
2076 2260 8.070034 TCAAAGTGATTCCTGAAATGCATAAT 57.930 30.769 0.00 0.00 0.00 1.28
2132 2316 1.398451 GCGATCACCGAACAGTTGTTG 60.398 52.381 1.62 0.00 41.76 3.33
2243 2429 4.402155 ACACATGCTGGTTTTCAGAAGAAA 59.598 37.500 0.00 0.00 46.18 2.52
2265 2451 8.968242 GTTTTGAATTAGAACAAGAATGGACAC 58.032 33.333 0.00 0.00 0.00 3.67
2269 2455 7.860373 TGACGTTTTGAATTAGAACAAGAATGG 59.140 33.333 0.00 0.00 0.00 3.16
2275 2461 7.008810 GCAGTTTGACGTTTTGAATTAGAACAA 59.991 33.333 0.00 0.00 0.00 2.83
2288 2477 0.381801 CTGCCTGCAGTTTGACGTTT 59.618 50.000 13.81 0.00 39.10 3.60
2347 2536 5.597813 AGCTTGATCGAAGTAGTTTTGTG 57.402 39.130 0.00 0.00 33.73 3.33
2425 2614 3.227276 CCCTCCGGTCCATCGAGG 61.227 72.222 0.00 8.97 39.47 4.63
2428 2617 3.227276 CCTCCCTCCGGTCCATCG 61.227 72.222 0.00 0.00 0.00 3.84
2451 2640 0.673022 CTCTTCAGTGACCTGCAGGC 60.673 60.000 33.06 24.14 38.66 4.85
2560 2749 3.062042 GTTGACGGTTCGTAGAAATGGT 58.938 45.455 0.00 0.00 45.90 3.55
2563 2752 2.982470 GTCGTTGACGGTTCGTAGAAAT 59.018 45.455 3.48 0.00 41.37 2.17
2566 2755 3.753774 GTCGTTGACGGTTCGTAGA 57.246 52.632 3.48 0.00 41.37 2.59
2579 2768 2.654912 CTTTCGCGCCTTCGTCGTT 61.655 57.895 0.00 0.00 36.87 3.85
2659 2848 5.928839 GTCTGTAGCAACTGAAATCTCTTCA 59.071 40.000 0.00 0.00 35.61 3.02
2660 2849 5.061560 CGTCTGTAGCAACTGAAATCTCTTC 59.938 44.000 0.00 0.00 35.61 2.87
2749 2944 8.791327 TTTTGCATGATACATAAGTCTCTGAA 57.209 30.769 0.00 0.00 0.00 3.02
2757 2953 8.637281 TTGCTGAATTTTGCATGATACATAAG 57.363 30.769 0.00 0.00 39.07 1.73
2760 2956 6.869695 TCTTGCTGAATTTTGCATGATACAT 58.130 32.000 13.94 0.00 38.07 2.29
2795 2995 7.094631 ACATGAACATGAAACCATCAATCAAG 58.905 34.615 19.56 0.00 42.54 3.02
2842 3045 3.369892 CCTTGTACACTTCTGCATAGCCT 60.370 47.826 0.00 0.00 0.00 4.58
2867 3070 1.743772 GCATTGGCCGTCAGACAGTAT 60.744 52.381 0.00 0.00 0.00 2.12
2950 3153 0.762461 GCACCTGGATCCCTAGCTCT 60.762 60.000 9.90 0.00 0.00 4.09
2983 3186 4.250305 AGCAGGTCGGCCGTGTTT 62.250 61.111 27.15 6.71 40.50 2.83
3099 3302 1.953559 TCACTCTGAACTTGCACACC 58.046 50.000 0.00 0.00 0.00 4.16
3167 3399 1.839994 TCTTCCCACTATTCCCTGCAG 59.160 52.381 6.78 6.78 0.00 4.41
3187 3419 1.606531 GCAGAGCCCACTCAAGGAT 59.393 57.895 0.00 0.00 46.09 3.24
3199 3431 2.236382 CGATCTTCTGCCGCAGAGC 61.236 63.158 21.87 12.36 41.75 4.09
3300 3532 0.319728 AATCATCGCCGAGGAGGATG 59.680 55.000 7.73 13.85 45.00 3.51
3399 3638 6.279513 TGAAAGAAGATTGTTGTTTGGTGT 57.720 33.333 0.00 0.00 0.00 4.16
3444 3700 8.641155 CATTACTTGCATGGCATATAATTTTCG 58.359 33.333 0.00 0.00 38.76 3.46
3458 3714 8.969121 TTAACTGTCATTTCATTACTTGCATG 57.031 30.769 0.00 0.00 0.00 4.06
3476 3732 9.507329 ACATCACTTTCATAGTTGATTAACTGT 57.493 29.630 12.85 3.44 46.28 3.55
3512 3768 4.265073 AGACAGACAAATGGCCATCTTAC 58.735 43.478 21.08 11.43 0.00 2.34
3521 3778 5.056480 TCTGTTGTGTAGACAGACAAATGG 58.944 41.667 3.03 0.72 46.21 3.16
3840 4097 6.748333 TTTGCCTAGAAAGACAGATTGATG 57.252 37.500 0.00 0.00 0.00 3.07
3844 4101 5.966742 GGTTTTGCCTAGAAAGACAGATT 57.033 39.130 0.00 0.00 0.00 2.40
3908 4166 2.184830 TCGTAGTCATCGCCGAGGG 61.185 63.158 0.00 0.00 0.00 4.30
3909 4167 1.009900 GTCGTAGTCATCGCCGAGG 60.010 63.158 0.00 0.00 0.00 4.63
4025 4283 7.907214 ACATCAGTAACTTAAACCTAGCAAG 57.093 36.000 0.00 0.00 0.00 4.01
4266 4531 6.272953 TGGACAACCCAATCATATTCCATA 57.727 37.500 0.00 0.00 43.29 2.74
4344 4609 2.755103 GGAGCTAGAAAACAACCCATGG 59.245 50.000 4.14 4.14 0.00 3.66
4386 4663 7.010923 GGCAACACAAAACATTTTACTCAATCA 59.989 33.333 0.00 0.00 0.00 2.57
4409 4690 2.113774 CTGGTGCTGTGGAAGGCA 59.886 61.111 0.00 0.00 36.01 4.75
4410 4691 1.673665 CTCTGGTGCTGTGGAAGGC 60.674 63.158 0.00 0.00 0.00 4.35
4458 4739 4.688879 TGTTTGTACGGTGATCATGTCTTC 59.311 41.667 0.00 0.00 0.00 2.87
4464 4745 6.653320 AGTTAACATGTTTGTACGGTGATCAT 59.347 34.615 17.78 0.00 34.06 2.45
4471 4752 7.972623 TTTTTCAGTTAACATGTTTGTACGG 57.027 32.000 17.78 12.86 34.06 4.02
4496 4778 9.396022 GTGATTGGAAATTCTCTTGGTTATCTA 57.604 33.333 0.00 0.00 0.00 1.98
4560 4842 9.856162 TCTCTTGGTTACAAACTAAATACCTTT 57.144 29.630 0.00 0.00 35.89 3.11
4598 4880 8.579850 TGCAGATAAATACCTCTGAATTGTTT 57.420 30.769 3.84 0.00 41.13 2.83
4627 4923 3.937706 CACAAGGATTAGAGGCTGAACTG 59.062 47.826 0.00 0.00 0.00 3.16
4628 4924 3.840666 TCACAAGGATTAGAGGCTGAACT 59.159 43.478 0.00 0.00 0.00 3.01
4630 4926 3.369892 GCTCACAAGGATTAGAGGCTGAA 60.370 47.826 0.00 0.00 32.13 3.02
4631 4927 2.169352 GCTCACAAGGATTAGAGGCTGA 59.831 50.000 0.00 0.00 32.13 4.26
4632 4928 2.093288 TGCTCACAAGGATTAGAGGCTG 60.093 50.000 0.00 0.00 32.13 4.85
4635 4931 4.187694 GTTCTGCTCACAAGGATTAGAGG 58.812 47.826 0.00 0.00 32.13 3.69
4636 4932 4.825422 TGTTCTGCTCACAAGGATTAGAG 58.175 43.478 0.00 0.00 33.92 2.43
4637 4933 4.890158 TGTTCTGCTCACAAGGATTAGA 57.110 40.909 0.00 0.00 0.00 2.10
4638 4934 5.947228 TTTGTTCTGCTCACAAGGATTAG 57.053 39.130 0.00 0.00 35.57 1.73
4640 4936 5.105392 TGTTTTTGTTCTGCTCACAAGGATT 60.105 36.000 0.00 0.00 35.57 3.01
4641 4937 4.402155 TGTTTTTGTTCTGCTCACAAGGAT 59.598 37.500 0.00 0.00 35.57 3.24
4781 5099 3.058160 GGCATTGCGTGAGGCTGT 61.058 61.111 1.91 0.00 44.05 4.40
4847 5168 2.290071 CCGTTCCAAGTTGGTAGTGGAT 60.290 50.000 21.35 0.00 41.05 3.41
4922 5244 1.973812 GAGGGCTTCAAGGTGGTGC 60.974 63.158 0.00 0.00 0.00 5.01
4967 5290 3.295273 ACACTGTCTCGCCGAGCA 61.295 61.111 9.77 9.95 0.00 4.26
5115 5444 4.911514 TTGTTTTCTAAGCCCAGAACAC 57.088 40.909 7.07 7.07 36.30 3.32
5116 5445 4.340950 CCTTTGTTTTCTAAGCCCAGAACA 59.659 41.667 0.00 0.00 34.31 3.18
5167 5496 2.754946 TTTAGGGGCACGTGAGTTAG 57.245 50.000 22.23 0.00 46.40 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.