Multiple sequence alignment - TraesCS7B01G409500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G409500 chr7B 100.000 3463 0 0 1 3463 678737690 678734228 0.000000e+00 6396.0
1 TraesCS7B01G409500 chr7B 94.261 1725 94 4 803 2525 678850657 678852378 0.000000e+00 2632.0
2 TraesCS7B01G409500 chr7B 79.633 1473 235 43 1094 2521 678664033 678662581 0.000000e+00 998.0
3 TraesCS7B01G409500 chr7B 77.658 837 136 38 724 1536 678648391 678647582 2.430000e-126 462.0
4 TraesCS7B01G409500 chr7B 97.717 219 2 1 356 571 678738079 678738297 1.170000e-99 374.0
5 TraesCS7B01G409500 chr7B 94.690 226 9 3 349 571 291566296 291566071 7.110000e-92 348.0
6 TraesCS7B01G409500 chr7B 98.788 165 2 0 153 317 534818576 534818740 9.400000e-76 294.0
7 TraesCS7B01G409500 chr7B 97.647 170 4 0 152 321 500023183 500023014 3.380000e-75 292.0
8 TraesCS7B01G409500 chr7B 96.970 165 5 0 151 315 709748490 709748326 9.470000e-71 278.0
9 TraesCS7B01G409500 chr7B 90.860 186 10 1 569 754 678849878 678850056 3.450000e-60 243.0
10 TraesCS7B01G409500 chr7B 92.763 152 10 1 4 155 678849691 678849841 5.820000e-53 219.0
11 TraesCS7B01G409500 chr7B 87.845 181 18 2 651 827 678850657 678850837 3.500000e-50 209.0
12 TraesCS7B01G409500 chr7B 85.638 188 23 3 727 911 678850657 678850843 9.810000e-46 195.0
13 TraesCS7B01G409500 chr7D 95.996 1948 74 2 568 2514 599399479 599397535 0.000000e+00 3162.0
14 TraesCS7B01G409500 chr7D 79.646 1749 275 51 724 2424 599193806 599192091 0.000000e+00 1182.0
15 TraesCS7B01G409500 chr7D 88.243 740 64 14 2513 3242 599393254 599392528 0.000000e+00 863.0
16 TraesCS7B01G409500 chr7D 80.909 550 87 16 1094 1634 599269169 599268629 5.350000e-113 418.0
17 TraesCS7B01G409500 chr7D 83.924 367 44 11 618 981 599399497 599399143 1.540000e-88 337.0
18 TraesCS7B01G409500 chr7D 96.053 152 6 0 4 155 599399666 599399515 7.420000e-62 248.0
19 TraesCS7B01G409500 chr7D 75.879 199 37 9 3087 3277 258211224 258211419 1.320000e-14 91.6
20 TraesCS7B01G409500 chr7D 100.000 42 0 0 316 357 599399517 599399476 1.030000e-10 78.7
21 TraesCS7B01G409500 chr7A 92.857 1960 125 7 568 2514 691523135 691521178 0.000000e+00 2830.0
22 TraesCS7B01G409500 chr7A 92.760 1547 80 8 1005 2525 691675678 691677218 0.000000e+00 2207.0
23 TraesCS7B01G409500 chr7A 79.583 720 87 30 2704 3387 691709104 691709799 8.760000e-126 460.0
24 TraesCS7B01G409500 chr7A 87.532 385 28 10 2513 2890 691514630 691514259 8.880000e-116 427.0
25 TraesCS7B01G409500 chr7A 90.385 312 27 3 2889 3198 691514155 691513845 1.160000e-109 407.0
26 TraesCS7B01G409500 chr7A 84.375 320 34 12 618 934 691523153 691522847 2.020000e-77 300.0
27 TraesCS7B01G409500 chr7A 78.775 457 82 9 2079 2521 691472856 691472401 3.380000e-75 292.0
28 TraesCS7B01G409500 chr7A 87.654 243 17 3 569 808 691674778 691675010 1.580000e-68 270.0
29 TraesCS7B01G409500 chr7A 96.774 155 5 0 1 155 691523325 691523171 3.430000e-65 259.0
30 TraesCS7B01G409500 chr7A 81.897 232 35 6 1094 1320 691474063 691473834 4.560000e-44 189.0
31 TraesCS7B01G409500 chr7A 96.460 113 3 1 43 155 691674630 691674741 5.900000e-43 185.0
32 TraesCS7B01G409500 chr7A 76.230 244 52 5 3156 3395 116125508 116125267 1.310000e-24 124.0
33 TraesCS7B01G409500 chr7A 97.619 42 1 0 316 357 691523173 691523132 4.790000e-09 73.1
34 TraesCS7B01G409500 chr7A 97.619 42 1 0 316 357 691674739 691674780 4.790000e-09 73.1
35 TraesCS7B01G409500 chr7A 100.000 29 0 0 6 34 153685829 153685857 2.000000e-03 54.7
36 TraesCS7B01G409500 chr2B 96.444 225 5 2 353 574 509158259 509158035 5.460000e-98 368.0
37 TraesCS7B01G409500 chr2B 95.556 225 7 2 353 574 509167785 509167561 1.180000e-94 357.0
38 TraesCS7B01G409500 chr2B 95.890 219 6 2 356 571 661177385 661177603 5.500000e-93 351.0
39 TraesCS7B01G409500 chr2B 98.214 168 3 0 150 317 23589090 23589257 9.400000e-76 294.0
40 TraesCS7B01G409500 chr2B 98.214 168 3 0 153 320 237980300 237980467 9.400000e-76 294.0
41 TraesCS7B01G409500 chr6B 96.804 219 4 2 356 571 174534768 174534986 2.540000e-96 363.0
42 TraesCS7B01G409500 chr6B 95.909 220 7 1 354 571 701525386 701525605 4.250000e-94 355.0
43 TraesCS7B01G409500 chr6B 95.516 223 7 2 355 574 397519138 397518916 1.530000e-93 353.0
44 TraesCS7B01G409500 chr6B 97.647 170 4 0 152 321 559700334 559700503 3.380000e-75 292.0
45 TraesCS7B01G409500 chr6B 76.695 236 42 8 3088 3313 6790694 6790462 6.070000e-23 119.0
46 TraesCS7B01G409500 chr6B 76.847 203 35 9 3183 3383 484101799 484101991 1.700000e-18 104.0
47 TraesCS7B01G409500 chr4B 77.665 591 114 9 1172 1747 12840339 12840926 9.200000e-91 344.0
48 TraesCS7B01G409500 chr4B 97.222 36 1 0 52 87 12828124 12828159 1.040000e-05 62.1
49 TraesCS7B01G409500 chr1B 94.273 227 9 3 349 571 654508402 654508628 9.200000e-91 344.0
50 TraesCS7B01G409500 chr3B 98.802 167 2 0 151 317 246304016 246303850 7.270000e-77 298.0
51 TraesCS7B01G409500 chr3B 97.661 171 4 0 147 317 658491669 658491839 9.400000e-76 294.0
52 TraesCS7B01G409500 chr5D 98.795 166 2 0 152 317 5556828 5556663 2.610000e-76 296.0
53 TraesCS7B01G409500 chr1D 80.800 125 21 2 3191 3313 314571005 314570882 1.020000e-15 95.3
54 TraesCS7B01G409500 chr6A 76.829 164 34 4 3152 3313 591860056 591860217 4.760000e-14 89.8
55 TraesCS7B01G409500 chr5B 87.273 55 6 1 3105 3159 130510675 130510622 1.040000e-05 62.1
56 TraesCS7B01G409500 chr2D 96.875 32 0 1 3 34 490807525 490807555 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G409500 chr7B 678734228 678737690 3462 True 6396.000 6396 100.00000 1 3463 1 chr7B.!!$R5 3462
1 TraesCS7B01G409500 chr7B 678662581 678664033 1452 True 998.000 998 79.63300 1094 2521 1 chr7B.!!$R4 1427
2 TraesCS7B01G409500 chr7B 678849691 678852378 2687 False 699.600 2632 90.27340 4 2525 5 chr7B.!!$F3 2521
3 TraesCS7B01G409500 chr7B 678647582 678648391 809 True 462.000 462 77.65800 724 1536 1 chr7B.!!$R3 812
4 TraesCS7B01G409500 chr7D 599192091 599193806 1715 True 1182.000 1182 79.64600 724 2424 1 chr7D.!!$R1 1700
5 TraesCS7B01G409500 chr7D 599397535 599399666 2131 True 956.425 3162 93.99325 4 2514 4 chr7D.!!$R4 2510
6 TraesCS7B01G409500 chr7D 599392528 599393254 726 True 863.000 863 88.24300 2513 3242 1 chr7D.!!$R3 729
7 TraesCS7B01G409500 chr7D 599268629 599269169 540 True 418.000 418 80.90900 1094 1634 1 chr7D.!!$R2 540
8 TraesCS7B01G409500 chr7A 691521178 691523325 2147 True 865.525 2830 92.90625 1 2514 4 chr7A.!!$R4 2513
9 TraesCS7B01G409500 chr7A 691674630 691677218 2588 False 683.775 2207 93.62325 43 2525 4 chr7A.!!$F3 2482
10 TraesCS7B01G409500 chr7A 691709104 691709799 695 False 460.000 460 79.58300 2704 3387 1 chr7A.!!$F2 683
11 TraesCS7B01G409500 chr7A 691513845 691514630 785 True 417.000 427 88.95850 2513 3198 2 chr7A.!!$R3 685
12 TraesCS7B01G409500 chr7A 691472401 691474063 1662 True 240.500 292 80.33600 1094 2521 2 chr7A.!!$R2 1427
13 TraesCS7B01G409500 chr4B 12840339 12840926 587 False 344.000 344 77.66500 1172 1747 1 chr4B.!!$F2 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
405 406 0.038166 ACGTACCCCTAGGTCGTCAA 59.962 55.000 8.29 0.0 46.45 3.18 F
406 407 1.341383 ACGTACCCCTAGGTCGTCAAT 60.341 52.381 8.29 0.0 46.45 2.57 F
2234 3473 1.406219 CTCGTGCTCACACCGAATCG 61.406 60.000 0.00 0.0 44.40 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 2861 0.599060 GAGCTATGCTCGGGGTAGAC 59.401 60.0 3.73 0.0 45.85 2.59 R
2250 3489 1.159285 CGAGGCAAATGTCTTGCTCA 58.841 50.0 9.15 0.0 44.36 4.26 R
3393 4802 0.107703 TGGCACGGAAGAAGCATAGG 60.108 55.0 0.00 0.0 37.39 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.956582 ACCTAAGTTACTCCCACTATGGT 58.043 43.478 0.00 0.00 35.17 3.55
37 38 4.163458 TCCCACTATGGTTAGCCTAAACTG 59.837 45.833 0.53 0.00 35.17 3.16
160 161 8.344446 GTAGAAATATCCTCTTCTACTCCCTC 57.656 42.308 14.04 0.00 45.53 4.30
161 162 6.319715 AGAAATATCCTCTTCTACTCCCTCC 58.680 44.000 0.00 0.00 30.05 4.30
162 163 2.668144 ATCCTCTTCTACTCCCTCCG 57.332 55.000 0.00 0.00 0.00 4.63
163 164 1.296984 TCCTCTTCTACTCCCTCCGT 58.703 55.000 0.00 0.00 0.00 4.69
164 165 1.639628 TCCTCTTCTACTCCCTCCGTT 59.360 52.381 0.00 0.00 0.00 4.44
165 166 2.025898 CCTCTTCTACTCCCTCCGTTC 58.974 57.143 0.00 0.00 0.00 3.95
166 167 2.025898 CTCTTCTACTCCCTCCGTTCC 58.974 57.143 0.00 0.00 0.00 3.62
167 168 1.639628 TCTTCTACTCCCTCCGTTCCT 59.360 52.381 0.00 0.00 0.00 3.36
168 169 2.848694 TCTTCTACTCCCTCCGTTCCTA 59.151 50.000 0.00 0.00 0.00 2.94
169 170 3.267812 TCTTCTACTCCCTCCGTTCCTAA 59.732 47.826 0.00 0.00 0.00 2.69
170 171 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
171 172 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
172 173 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
173 174 5.769835 TCTACTCCCTCCGTTCCTAAATAA 58.230 41.667 0.00 0.00 0.00 1.40
174 175 6.379579 TCTACTCCCTCCGTTCCTAAATAAT 58.620 40.000 0.00 0.00 0.00 1.28
175 176 5.970501 ACTCCCTCCGTTCCTAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
176 177 5.681639 ACTCCCTCCGTTCCTAAATAATTG 58.318 41.667 0.00 0.00 0.00 2.32
177 178 5.191124 ACTCCCTCCGTTCCTAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
178 179 5.677567 TCCCTCCGTTCCTAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
179 180 5.427481 TCCCTCCGTTCCTAAATAATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
180 181 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
181 182 6.602009 CCCTCCGTTCCTAAATAATTGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
182 183 7.201705 CCCTCCGTTCCTAAATAATTGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
183 184 7.553044 CCTCCGTTCCTAAATAATTGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
184 185 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
185 186 9.595823 TCCGTTCCTAAATAATTGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
186 187 9.595823 CCGTTCCTAAATAATTGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
199 200 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
200 201 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
201 202 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
202 203 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
203 204 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
204 205 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
205 206 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
206 207 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
207 208 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
209 210 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
210 211 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
211 212 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
212 213 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
213 214 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
214 215 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
215 216 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
216 217 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
217 218 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
218 219 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
219 220 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
220 221 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
221 222 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
222 223 5.350365 GTGACTACATACGGAGCAAAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
223 224 6.037172 GTGACTACATACGGAGCAAAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
224 225 6.037062 TGACTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
225 226 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
226 227 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
227 228 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
228 229 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
229 230 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
230 231 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
231 232 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
232 233 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
233 234 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
234 235 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
235 236 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
236 237 7.066766 GGAGCAAAATGAATGAATCTACACTCT 59.933 37.037 0.00 0.00 0.00 3.24
237 238 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
238 239 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
245 246 9.725019 TGAATGAATCTACACTCTAAAACATGT 57.275 29.630 0.00 0.00 0.00 3.21
247 248 9.950496 AATGAATCTACACTCTAAAACATGTCT 57.050 29.630 0.00 0.00 0.00 3.41
249 250 9.856488 TGAATCTACACTCTAAAACATGTCTAC 57.144 33.333 0.00 0.00 0.00 2.59
250 251 9.856488 GAATCTACACTCTAAAACATGTCTACA 57.144 33.333 0.00 0.00 0.00 2.74
256 257 9.587772 ACACTCTAAAACATGTCTACATACATC 57.412 33.333 0.00 0.00 38.01 3.06
257 258 9.035607 CACTCTAAAACATGTCTACATACATCC 57.964 37.037 0.00 0.00 38.01 3.51
258 259 7.921214 ACTCTAAAACATGTCTACATACATCCG 59.079 37.037 0.00 0.00 38.01 4.18
259 260 7.778083 TCTAAAACATGTCTACATACATCCGT 58.222 34.615 0.00 0.00 38.01 4.69
260 261 8.905850 TCTAAAACATGTCTACATACATCCGTA 58.094 33.333 0.00 0.00 38.01 4.02
261 262 9.692749 CTAAAACATGTCTACATACATCCGTAT 57.307 33.333 0.00 0.00 38.01 3.06
265 266 9.639601 AACATGTCTACATACATCCGTATATTG 57.360 33.333 0.00 0.00 38.01 1.90
266 267 8.803235 ACATGTCTACATACATCCGTATATTGT 58.197 33.333 0.00 0.00 38.01 2.71
269 270 9.511272 TGTCTACATACATCCGTATATTGTAGT 57.489 33.333 0.00 0.00 38.60 2.73
270 271 9.985318 GTCTACATACATCCGTATATTGTAGTC 57.015 37.037 0.00 0.00 38.60 2.59
271 272 9.170734 TCTACATACATCCGTATATTGTAGTCC 57.829 37.037 0.00 0.00 38.60 3.85
272 273 7.770366 ACATACATCCGTATATTGTAGTCCA 57.230 36.000 0.00 0.00 36.11 4.02
273 274 8.362464 ACATACATCCGTATATTGTAGTCCAT 57.638 34.615 0.00 0.00 36.11 3.41
274 275 8.812972 ACATACATCCGTATATTGTAGTCCATT 58.187 33.333 0.00 0.00 36.11 3.16
275 276 9.653287 CATACATCCGTATATTGTAGTCCATTT 57.347 33.333 0.00 0.00 36.11 2.32
276 277 7.962964 ACATCCGTATATTGTAGTCCATTTG 57.037 36.000 0.00 0.00 0.00 2.32
277 278 7.732025 ACATCCGTATATTGTAGTCCATTTGA 58.268 34.615 0.00 0.00 0.00 2.69
278 279 7.872993 ACATCCGTATATTGTAGTCCATTTGAG 59.127 37.037 0.00 0.00 0.00 3.02
279 280 7.591421 TCCGTATATTGTAGTCCATTTGAGA 57.409 36.000 0.00 0.00 0.00 3.27
280 281 8.190326 TCCGTATATTGTAGTCCATTTGAGAT 57.810 34.615 0.00 0.00 0.00 2.75
281 282 8.088365 TCCGTATATTGTAGTCCATTTGAGATG 58.912 37.037 0.00 0.00 0.00 2.90
282 283 7.331934 CCGTATATTGTAGTCCATTTGAGATGG 59.668 40.741 0.00 0.00 40.48 3.51
283 284 7.148573 CGTATATTGTAGTCCATTTGAGATGGC 60.149 40.741 0.00 0.00 39.01 4.40
284 285 4.574674 TTGTAGTCCATTTGAGATGGCT 57.425 40.909 0.00 1.24 39.01 4.75
285 286 5.692115 TTGTAGTCCATTTGAGATGGCTA 57.308 39.130 0.00 0.33 39.01 3.93
286 287 5.282055 TGTAGTCCATTTGAGATGGCTAG 57.718 43.478 0.00 0.00 39.01 3.42
287 288 4.962362 TGTAGTCCATTTGAGATGGCTAGA 59.038 41.667 0.00 0.00 39.01 2.43
288 289 5.425217 TGTAGTCCATTTGAGATGGCTAGAA 59.575 40.000 0.00 0.00 39.01 2.10
289 290 5.441718 AGTCCATTTGAGATGGCTAGAAA 57.558 39.130 0.00 0.00 39.01 2.52
290 291 5.435291 AGTCCATTTGAGATGGCTAGAAAG 58.565 41.667 0.00 0.00 39.01 2.62
291 292 5.190528 AGTCCATTTGAGATGGCTAGAAAGA 59.809 40.000 0.00 0.00 39.01 2.52
292 293 5.295540 GTCCATTTGAGATGGCTAGAAAGAC 59.704 44.000 0.00 0.00 39.01 3.01
294 295 5.649395 CCATTTGAGATGGCTAGAAAGACAA 59.351 40.000 0.00 0.00 46.32 3.18
295 296 6.320672 CCATTTGAGATGGCTAGAAAGACAAT 59.679 38.462 0.00 0.00 46.32 2.71
296 297 7.147949 CCATTTGAGATGGCTAGAAAGACAATT 60.148 37.037 0.00 0.00 46.32 2.32
297 298 8.896744 CATTTGAGATGGCTAGAAAGACAATTA 58.103 33.333 0.00 0.00 46.32 1.40
298 299 9.638176 ATTTGAGATGGCTAGAAAGACAATTAT 57.362 29.630 0.00 0.00 46.32 1.28
299 300 9.466497 TTTGAGATGGCTAGAAAGACAATTATT 57.534 29.630 0.00 0.00 46.32 1.40
300 301 9.466497 TTGAGATGGCTAGAAAGACAATTATTT 57.534 29.630 0.00 0.00 46.32 1.40
301 302 8.896744 TGAGATGGCTAGAAAGACAATTATTTG 58.103 33.333 0.00 0.00 46.32 2.32
302 303 8.230472 AGATGGCTAGAAAGACAATTATTTGG 57.770 34.615 0.00 0.00 46.32 3.28
303 304 6.773976 TGGCTAGAAAGACAATTATTTGGG 57.226 37.500 0.00 0.00 38.01 4.12
304 305 6.489603 TGGCTAGAAAGACAATTATTTGGGA 58.510 36.000 0.00 0.00 38.01 4.37
305 306 6.951198 TGGCTAGAAAGACAATTATTTGGGAA 59.049 34.615 0.00 0.00 38.01 3.97
306 307 7.093945 TGGCTAGAAAGACAATTATTTGGGAAC 60.094 37.037 0.00 0.00 38.01 3.62
307 308 6.967199 GCTAGAAAGACAATTATTTGGGAACG 59.033 38.462 0.00 0.00 37.15 3.95
308 309 6.267496 AGAAAGACAATTATTTGGGAACGG 57.733 37.500 2.66 0.00 37.15 4.44
309 310 6.007703 AGAAAGACAATTATTTGGGAACGGA 58.992 36.000 2.66 0.00 37.15 4.69
310 311 5.897377 AAGACAATTATTTGGGAACGGAG 57.103 39.130 2.66 0.00 37.15 4.63
311 312 4.270008 AGACAATTATTTGGGAACGGAGG 58.730 43.478 2.66 0.00 37.15 4.30
312 313 3.361786 ACAATTATTTGGGAACGGAGGG 58.638 45.455 2.66 0.00 37.15 4.30
313 314 3.010808 ACAATTATTTGGGAACGGAGGGA 59.989 43.478 2.66 0.00 37.15 4.20
314 315 3.577805 ATTATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
315 316 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
316 317 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
357 358 7.067494 AGGGATATGCAAATCTCAACAAAGTAC 59.933 37.037 0.00 0.00 0.00 2.73
358 359 7.067494 GGGATATGCAAATCTCAACAAAGTACT 59.933 37.037 0.00 0.00 0.00 2.73
359 360 9.109393 GGATATGCAAATCTCAACAAAGTACTA 57.891 33.333 0.00 0.00 0.00 1.82
360 361 9.922305 GATATGCAAATCTCAACAAAGTACTAC 57.078 33.333 0.00 0.00 0.00 2.73
361 362 6.554334 TGCAAATCTCAACAAAGTACTACC 57.446 37.500 0.00 0.00 0.00 3.18
362 363 6.296026 TGCAAATCTCAACAAAGTACTACCT 58.704 36.000 0.00 0.00 0.00 3.08
363 364 6.426937 TGCAAATCTCAACAAAGTACTACCTC 59.573 38.462 0.00 0.00 0.00 3.85
364 365 6.651225 GCAAATCTCAACAAAGTACTACCTCT 59.349 38.462 0.00 0.00 0.00 3.69
365 366 7.148557 GCAAATCTCAACAAAGTACTACCTCTC 60.149 40.741 0.00 0.00 0.00 3.20
366 367 7.784470 AATCTCAACAAAGTACTACCTCTCT 57.216 36.000 0.00 0.00 0.00 3.10
367 368 6.821031 TCTCAACAAAGTACTACCTCTCTC 57.179 41.667 0.00 0.00 0.00 3.20
368 369 6.544650 TCTCAACAAAGTACTACCTCTCTCT 58.455 40.000 0.00 0.00 0.00 3.10
369 370 6.655848 TCTCAACAAAGTACTACCTCTCTCTC 59.344 42.308 0.00 0.00 0.00 3.20
370 371 6.304624 TCAACAAAGTACTACCTCTCTCTCA 58.695 40.000 0.00 0.00 0.00 3.27
371 372 6.431543 TCAACAAAGTACTACCTCTCTCTCAG 59.568 42.308 0.00 0.00 0.00 3.35
372 373 5.883180 ACAAAGTACTACCTCTCTCTCAGT 58.117 41.667 0.00 0.00 0.00 3.41
373 374 6.308566 ACAAAGTACTACCTCTCTCTCAGTT 58.691 40.000 0.00 0.00 0.00 3.16
374 375 6.778559 ACAAAGTACTACCTCTCTCTCAGTTT 59.221 38.462 0.00 0.00 0.00 2.66
375 376 7.943447 ACAAAGTACTACCTCTCTCTCAGTTTA 59.057 37.037 0.00 0.00 0.00 2.01
376 377 7.926674 AAGTACTACCTCTCTCTCAGTTTAC 57.073 40.000 0.00 0.00 0.00 2.01
377 378 7.018487 AGTACTACCTCTCTCTCAGTTTACA 57.982 40.000 0.00 0.00 0.00 2.41
378 379 7.107542 AGTACTACCTCTCTCTCAGTTTACAG 58.892 42.308 0.00 0.00 0.00 2.74
379 380 5.258051 ACTACCTCTCTCTCAGTTTACAGG 58.742 45.833 0.00 0.00 0.00 4.00
380 381 3.436243 ACCTCTCTCTCAGTTTACAGGG 58.564 50.000 0.00 0.00 0.00 4.45
381 382 2.167487 CCTCTCTCTCAGTTTACAGGGC 59.833 54.545 0.00 0.00 0.00 5.19
382 383 1.819288 TCTCTCTCAGTTTACAGGGCG 59.181 52.381 0.00 0.00 0.00 6.13
383 384 1.546476 CTCTCTCAGTTTACAGGGCGT 59.454 52.381 0.00 0.00 0.00 5.68
384 385 1.272490 TCTCTCAGTTTACAGGGCGTG 59.728 52.381 5.50 5.50 0.00 5.34
385 386 0.320421 TCTCAGTTTACAGGGCGTGC 60.320 55.000 7.17 0.00 0.00 5.34
386 387 0.602638 CTCAGTTTACAGGGCGTGCA 60.603 55.000 7.17 0.00 0.00 4.57
387 388 0.882927 TCAGTTTACAGGGCGTGCAC 60.883 55.000 6.82 6.82 0.00 4.57
388 389 1.959226 AGTTTACAGGGCGTGCACG 60.959 57.895 34.01 34.01 43.27 5.34
389 390 2.109387 TTTACAGGGCGTGCACGT 59.891 55.556 36.80 21.32 42.22 4.49
390 391 0.945265 GTTTACAGGGCGTGCACGTA 60.945 55.000 36.80 20.26 42.22 3.57
391 392 0.945265 TTTACAGGGCGTGCACGTAC 60.945 55.000 36.80 28.93 42.22 3.67
392 393 2.768503 TTACAGGGCGTGCACGTACC 62.769 60.000 36.80 34.88 42.22 3.34
396 397 3.762247 GGCGTGCACGTACCCCTA 61.762 66.667 36.80 0.00 42.22 3.53
397 398 2.202703 GCGTGCACGTACCCCTAG 60.203 66.667 36.80 9.58 42.22 3.02
398 399 2.493030 CGTGCACGTACCCCTAGG 59.507 66.667 30.50 0.06 35.06 3.02
400 401 1.514553 GTGCACGTACCCCTAGGTC 59.485 63.158 8.29 0.00 46.45 3.85
401 402 2.048023 TGCACGTACCCCTAGGTCG 61.048 63.158 8.29 9.36 46.45 4.79
402 403 2.048603 GCACGTACCCCTAGGTCGT 61.049 63.158 8.29 9.98 46.45 4.34
403 404 1.997928 GCACGTACCCCTAGGTCGTC 61.998 65.000 8.29 4.51 46.45 4.20
404 405 0.677731 CACGTACCCCTAGGTCGTCA 60.678 60.000 8.29 0.00 46.45 4.35
405 406 0.038166 ACGTACCCCTAGGTCGTCAA 59.962 55.000 8.29 0.00 46.45 3.18
406 407 1.341383 ACGTACCCCTAGGTCGTCAAT 60.341 52.381 8.29 0.00 46.45 2.57
407 408 1.753073 CGTACCCCTAGGTCGTCAATT 59.247 52.381 8.29 0.00 46.45 2.32
408 409 2.167075 CGTACCCCTAGGTCGTCAATTT 59.833 50.000 8.29 0.00 46.45 1.82
409 410 2.781681 ACCCCTAGGTCGTCAATTTG 57.218 50.000 8.29 0.00 46.45 2.32
410 411 2.262637 ACCCCTAGGTCGTCAATTTGA 58.737 47.619 8.29 0.00 46.45 2.69
411 412 2.027469 ACCCCTAGGTCGTCAATTTGAC 60.027 50.000 17.76 17.76 46.45 3.18
412 413 5.201262 ACCCCTAGGTCGTCAATTTGACC 62.201 52.174 20.87 10.15 46.45 4.02
420 421 5.622770 GTCGTCAATTTGACCAACCTAAT 57.377 39.130 20.87 0.00 44.20 1.73
421 422 6.730960 GTCGTCAATTTGACCAACCTAATA 57.269 37.500 20.87 0.00 44.20 0.98
422 423 6.540205 GTCGTCAATTTGACCAACCTAATAC 58.460 40.000 20.87 5.03 44.20 1.89
423 424 6.148150 GTCGTCAATTTGACCAACCTAATACA 59.852 38.462 20.87 0.00 44.20 2.29
424 425 6.711194 TCGTCAATTTGACCAACCTAATACAA 59.289 34.615 20.87 0.00 44.20 2.41
425 426 7.021196 CGTCAATTTGACCAACCTAATACAAG 58.979 38.462 20.87 1.46 44.20 3.16
426 427 7.308348 CGTCAATTTGACCAACCTAATACAAGT 60.308 37.037 20.87 0.00 44.20 3.16
427 428 8.021396 GTCAATTTGACCAACCTAATACAAGTC 58.979 37.037 17.07 0.00 41.37 3.01
428 429 7.721842 TCAATTTGACCAACCTAATACAAGTCA 59.278 33.333 0.00 0.00 0.00 3.41
429 430 8.522830 CAATTTGACCAACCTAATACAAGTCAT 58.477 33.333 0.00 0.00 33.21 3.06
430 431 9.747898 AATTTGACCAACCTAATACAAGTCATA 57.252 29.630 0.00 0.00 33.21 2.15
431 432 9.920946 ATTTGACCAACCTAATACAAGTCATAT 57.079 29.630 0.00 0.00 33.21 1.78
472 473 9.520515 ACCAACATAAACTTCAGATGTTCTATT 57.479 29.630 2.28 0.00 40.85 1.73
480 481 9.971922 AAACTTCAGATGTTCTATTTTCCAAAG 57.028 29.630 2.28 0.00 0.00 2.77
481 482 8.924511 ACTTCAGATGTTCTATTTTCCAAAGA 57.075 30.769 0.00 0.00 0.00 2.52
482 483 9.525826 ACTTCAGATGTTCTATTTTCCAAAGAT 57.474 29.630 0.00 0.00 0.00 2.40
529 530 7.919385 ATTAGGATGATAAAATTGGCAACCT 57.081 32.000 0.00 3.65 37.33 3.50
531 532 6.966534 AGGATGATAAAATTGGCAACCTAG 57.033 37.500 0.00 0.00 32.61 3.02
532 533 5.835280 AGGATGATAAAATTGGCAACCTAGG 59.165 40.000 7.41 7.41 32.61 3.02
533 534 5.598417 GGATGATAAAATTGGCAACCTAGGT 59.402 40.000 9.21 9.21 0.00 3.08
534 535 6.775629 GGATGATAAAATTGGCAACCTAGGTA 59.224 38.462 16.67 0.00 0.00 3.08
535 536 7.451566 GGATGATAAAATTGGCAACCTAGGTAT 59.548 37.037 16.67 0.83 0.00 2.73
536 537 9.515226 GATGATAAAATTGGCAACCTAGGTATA 57.485 33.333 16.67 0.00 0.00 1.47
537 538 8.685838 TGATAAAATTGGCAACCTAGGTATAC 57.314 34.615 16.67 8.74 0.00 1.47
538 539 7.442969 TGATAAAATTGGCAACCTAGGTATACG 59.557 37.037 16.67 5.52 0.00 3.06
539 540 2.607631 TTGGCAACCTAGGTATACGC 57.392 50.000 16.67 15.11 0.00 4.42
540 541 1.487300 TGGCAACCTAGGTATACGCA 58.513 50.000 16.67 5.50 0.00 5.24
541 542 2.043992 TGGCAACCTAGGTATACGCAT 58.956 47.619 16.67 0.00 0.00 4.73
542 543 3.232662 TGGCAACCTAGGTATACGCATA 58.767 45.455 16.67 6.29 0.00 3.14
543 544 3.257375 TGGCAACCTAGGTATACGCATAG 59.743 47.826 16.67 0.00 0.00 2.23
544 545 3.368116 GGCAACCTAGGTATACGCATAGG 60.368 52.174 16.67 18.75 40.58 2.57
545 546 3.508793 GCAACCTAGGTATACGCATAGGA 59.491 47.826 23.78 0.00 38.53 2.94
546 547 4.617762 GCAACCTAGGTATACGCATAGGAC 60.618 50.000 23.78 13.98 38.53 3.85
547 548 4.654389 ACCTAGGTATACGCATAGGACT 57.346 45.455 23.78 6.78 38.53 3.85
548 549 4.995536 ACCTAGGTATACGCATAGGACTT 58.004 43.478 23.78 8.07 38.53 3.01
549 550 4.765856 ACCTAGGTATACGCATAGGACTTG 59.234 45.833 23.78 5.62 38.53 3.16
550 551 4.765856 CCTAGGTATACGCATAGGACTTGT 59.234 45.833 16.76 0.00 37.57 3.16
551 552 5.942236 CCTAGGTATACGCATAGGACTTGTA 59.058 44.000 16.76 0.00 37.57 2.41
552 553 6.432162 CCTAGGTATACGCATAGGACTTGTAA 59.568 42.308 16.76 0.00 37.57 2.41
553 554 6.720112 AGGTATACGCATAGGACTTGTAAA 57.280 37.500 0.00 0.00 0.00 2.01
554 555 6.510536 AGGTATACGCATAGGACTTGTAAAC 58.489 40.000 0.00 0.00 0.00 2.01
555 556 6.323225 AGGTATACGCATAGGACTTGTAAACT 59.677 38.462 0.00 0.00 0.00 2.66
556 557 6.420008 GGTATACGCATAGGACTTGTAAACTG 59.580 42.308 0.00 0.00 0.00 3.16
557 558 4.530710 ACGCATAGGACTTGTAAACTGA 57.469 40.909 0.00 0.00 0.00 3.41
558 559 4.495422 ACGCATAGGACTTGTAAACTGAG 58.505 43.478 0.00 0.00 0.00 3.35
559 560 4.219944 ACGCATAGGACTTGTAAACTGAGA 59.780 41.667 0.00 0.00 0.00 3.27
560 561 4.563184 CGCATAGGACTTGTAAACTGAGAC 59.437 45.833 0.00 0.00 0.00 3.36
561 562 4.563184 GCATAGGACTTGTAAACTGAGACG 59.437 45.833 0.00 0.00 0.00 4.18
562 563 3.662247 AGGACTTGTAAACTGAGACGG 57.338 47.619 0.00 0.00 0.00 4.79
563 564 3.228453 AGGACTTGTAAACTGAGACGGA 58.772 45.455 0.00 0.00 0.00 4.69
564 565 3.256136 AGGACTTGTAAACTGAGACGGAG 59.744 47.826 0.00 0.00 0.00 4.63
565 566 3.576648 GACTTGTAAACTGAGACGGAGG 58.423 50.000 0.00 0.00 0.00 4.30
566 567 2.299297 ACTTGTAAACTGAGACGGAGGG 59.701 50.000 0.00 0.00 0.00 4.30
567 568 2.297698 TGTAAACTGAGACGGAGGGA 57.702 50.000 0.00 0.00 0.00 4.20
568 569 2.168496 TGTAAACTGAGACGGAGGGAG 58.832 52.381 0.00 0.00 0.00 4.30
569 570 2.169330 GTAAACTGAGACGGAGGGAGT 58.831 52.381 0.00 0.00 0.00 3.85
570 571 2.599408 AAACTGAGACGGAGGGAGTA 57.401 50.000 0.00 0.00 0.00 2.59
644 648 5.123820 TGCAAATCCCAACTAGAGATTTTCG 59.876 40.000 0.00 0.00 37.97 3.46
739 743 6.588719 TTTTGGTTCATAGTAAATGCAGCT 57.411 33.333 0.00 0.00 0.00 4.24
788 1068 5.437060 AGGGATACGCAAATAACAACAGAT 58.563 37.500 0.00 0.00 37.60 2.90
909 1549 3.370527 GCAGCCAAAACCTCCTCTACATA 60.371 47.826 0.00 0.00 0.00 2.29
1152 2095 3.188786 GTACTTGCGGCGCTCCTG 61.189 66.667 33.26 20.55 0.00 3.86
1894 2861 1.579698 CATGAAGAGCACCAGGATCG 58.420 55.000 0.00 0.00 36.90 3.69
2162 3395 4.880537 CCTCTGCTTCCGCGCGAT 62.881 66.667 34.63 0.00 39.65 4.58
2234 3473 1.406219 CTCGTGCTCACACCGAATCG 61.406 60.000 0.00 0.00 44.40 3.34
2250 3489 3.120338 CGAATCGGTTGTTTGTAGTGCAT 60.120 43.478 0.00 0.00 0.00 3.96
2366 3605 1.517832 CCAGCAGGGTCTACTTCGG 59.482 63.158 0.00 0.00 0.00 4.30
2442 3708 2.587956 CGAACAATCCGAGTTGACGTA 58.412 47.619 6.73 0.00 33.37 3.57
2557 3823 3.141398 TGTCTTTGCAAGTAGGCTGAAG 58.859 45.455 0.00 0.00 34.04 3.02
2558 3824 3.142174 GTCTTTGCAAGTAGGCTGAAGT 58.858 45.455 0.00 0.00 32.91 3.01
2574 3840 6.490040 AGGCTGAAGTTCATTTTAAACAGCTA 59.510 34.615 17.44 0.00 45.47 3.32
2575 3841 6.803807 GGCTGAAGTTCATTTTAAACAGCTAG 59.196 38.462 17.44 0.00 45.47 3.42
2576 3842 6.306596 GCTGAAGTTCATTTTAAACAGCTAGC 59.693 38.462 6.62 6.62 43.69 3.42
2577 3843 7.510549 TGAAGTTCATTTTAAACAGCTAGCT 57.489 32.000 12.68 12.68 0.00 3.32
2578 3844 7.584987 TGAAGTTCATTTTAAACAGCTAGCTC 58.415 34.615 16.15 0.00 0.00 4.09
2579 3845 6.502136 AGTTCATTTTAAACAGCTAGCTCC 57.498 37.500 16.15 0.00 0.00 4.70
2580 3846 5.122396 AGTTCATTTTAAACAGCTAGCTCCG 59.878 40.000 16.15 7.47 0.00 4.63
2581 3847 3.374058 TCATTTTAAACAGCTAGCTCCGC 59.626 43.478 16.15 0.00 0.00 5.54
2582 3848 2.762535 TTTAAACAGCTAGCTCCGCT 57.237 45.000 16.15 4.71 43.41 5.52
2611 3877 4.096003 ACCCCGTGAGCCAATCGG 62.096 66.667 0.00 0.00 43.30 4.18
2621 3887 2.828095 CCAATCGGATGGCGCCAA 60.828 61.111 36.33 18.56 32.78 4.52
2639 3905 0.179119 AACGCATAGAGTGTACCGGC 60.179 55.000 0.00 0.00 40.86 6.13
2640 3906 1.035932 ACGCATAGAGTGTACCGGCT 61.036 55.000 0.00 0.00 39.69 5.52
2641 3907 0.595053 CGCATAGAGTGTACCGGCTG 60.595 60.000 0.00 0.00 0.00 4.85
2643 3909 1.136305 GCATAGAGTGTACCGGCTGAA 59.864 52.381 0.00 0.00 0.00 3.02
2644 3910 2.418197 GCATAGAGTGTACCGGCTGAAA 60.418 50.000 0.00 0.00 0.00 2.69
2724 3998 5.182380 TCCGGTGGTTCATATTTCTTTCAAC 59.818 40.000 0.00 0.00 0.00 3.18
2726 4000 6.350110 CCGGTGGTTCATATTTCTTTCAACAT 60.350 38.462 0.00 0.00 0.00 2.71
2870 4146 8.221801 TGTGCATTTTTAACGATTCATTGTAC 57.778 30.769 0.00 0.00 0.00 2.90
3000 4381 7.216494 TCAGTCATATCTTAATGAATTCCGCA 58.784 34.615 2.27 0.00 37.61 5.69
3015 4396 8.389779 TGAATTCCGCAAATATATAGAAGCAA 57.610 30.769 2.27 0.00 0.00 3.91
3018 4399 9.683069 AATTCCGCAAATATATAGAAGCAAAAG 57.317 29.630 0.00 0.00 0.00 2.27
3121 4527 4.380087 CAGTATAGACGCAAACGCTCATAG 59.620 45.833 0.00 0.00 45.53 2.23
3126 4532 3.113322 GACGCAAACGCTCATAGATACA 58.887 45.455 0.00 0.00 45.53 2.29
3139 4545 8.023706 CGCTCATAGATACACACATACACTTAT 58.976 37.037 0.00 0.00 0.00 1.73
3153 4559 9.006839 CACATACACTTATCCTTATGAATGCAT 57.993 33.333 0.00 0.00 38.54 3.96
3166 4572 0.039472 AATGCATGCACACCCTACCA 59.961 50.000 25.37 0.00 0.00 3.25
3173 4579 0.035820 GCACACCCTACCATTCCGAA 60.036 55.000 0.00 0.00 0.00 4.30
3179 4585 1.280998 CCCTACCATTCCGAACACCTT 59.719 52.381 0.00 0.00 0.00 3.50
3269 4675 2.649331 ACGTCTATTCCCACTGAACG 57.351 50.000 0.00 0.00 35.31 3.95
3276 4682 1.790755 TTCCCACTGAACGAACATCG 58.209 50.000 0.00 0.00 46.93 3.84
3278 4684 0.670546 CCCACTGAACGAACATCGCT 60.671 55.000 0.00 0.00 45.12 4.93
3285 4691 3.591023 TGAACGAACATCGCTGGAAATA 58.409 40.909 0.00 0.00 45.12 1.40
3288 4694 4.380841 ACGAACATCGCTGGAAATACTA 57.619 40.909 0.00 0.00 45.12 1.82
3313 4719 5.734855 TTAAATCTAGAAACATGCGAGCC 57.265 39.130 0.00 0.00 0.00 4.70
3314 4720 2.988010 ATCTAGAAACATGCGAGCCA 57.012 45.000 0.00 0.00 0.00 4.75
3324 4730 3.286751 GCGAGCCACAGTGCCAAA 61.287 61.111 0.00 0.00 0.00 3.28
3325 4731 2.629656 GCGAGCCACAGTGCCAAAT 61.630 57.895 0.00 0.00 0.00 2.32
3326 4732 1.305219 GCGAGCCACAGTGCCAAATA 61.305 55.000 0.00 0.00 0.00 1.40
3327 4733 0.447801 CGAGCCACAGTGCCAAATAC 59.552 55.000 0.00 0.00 0.00 1.89
3328 4734 1.826385 GAGCCACAGTGCCAAATACT 58.174 50.000 0.00 0.00 0.00 2.12
3329 4735 2.676750 CGAGCCACAGTGCCAAATACTA 60.677 50.000 0.00 0.00 0.00 1.82
3331 4737 3.756434 GAGCCACAGTGCCAAATACTAAA 59.244 43.478 0.00 0.00 0.00 1.85
3334 4740 5.949354 AGCCACAGTGCCAAATACTAAATTA 59.051 36.000 0.00 0.00 0.00 1.40
3336 4742 7.124147 AGCCACAGTGCCAAATACTAAATTAAT 59.876 33.333 0.00 0.00 0.00 1.40
3339 4745 7.920682 CACAGTGCCAAATACTAAATTAATCCC 59.079 37.037 0.00 0.00 0.00 3.85
3340 4746 7.839200 ACAGTGCCAAATACTAAATTAATCCCT 59.161 33.333 0.00 0.00 0.00 4.20
3341 4747 8.352942 CAGTGCCAAATACTAAATTAATCCCTC 58.647 37.037 0.00 0.00 0.00 4.30
3342 4748 7.228706 AGTGCCAAATACTAAATTAATCCCTCG 59.771 37.037 0.00 0.00 0.00 4.63
3345 4751 7.012989 GCCAAATACTAAATTAATCCCTCGTGT 59.987 37.037 0.00 0.00 0.00 4.49
3387 4796 4.341520 ACCTAACCATCTAAGCTAGGTTCG 59.658 45.833 11.11 5.05 42.95 3.95
3388 4797 3.821421 AACCATCTAAGCTAGGTTCGG 57.179 47.619 11.11 10.13 40.12 4.30
3389 4798 2.748388 ACCATCTAAGCTAGGTTCGGT 58.252 47.619 11.11 10.74 0.00 4.69
3390 4799 3.105283 ACCATCTAAGCTAGGTTCGGTT 58.895 45.455 11.11 0.00 0.00 4.44
3391 4800 3.132467 ACCATCTAAGCTAGGTTCGGTTC 59.868 47.826 11.11 0.00 0.00 3.62
3392 4801 3.372954 CATCTAAGCTAGGTTCGGTTCG 58.627 50.000 11.11 0.00 0.00 3.95
3393 4802 1.133790 TCTAAGCTAGGTTCGGTTCGC 59.866 52.381 11.11 0.00 0.00 4.70
3394 4803 0.174162 TAAGCTAGGTTCGGTTCGCC 59.826 55.000 11.11 0.00 0.00 5.54
3395 4804 1.542187 AAGCTAGGTTCGGTTCGCCT 61.542 55.000 0.12 0.00 36.47 5.52
3396 4805 0.682209 AGCTAGGTTCGGTTCGCCTA 60.682 55.000 0.00 0.00 34.07 3.93
3397 4806 0.388294 GCTAGGTTCGGTTCGCCTAT 59.612 55.000 0.00 0.00 34.72 2.57
3398 4807 1.868519 GCTAGGTTCGGTTCGCCTATG 60.869 57.143 0.00 0.00 34.72 2.23
3399 4808 0.103572 TAGGTTCGGTTCGCCTATGC 59.896 55.000 0.00 0.00 34.07 3.14
3400 4809 1.153429 GGTTCGGTTCGCCTATGCT 60.153 57.895 0.00 0.00 34.43 3.79
3401 4810 0.743345 GGTTCGGTTCGCCTATGCTT 60.743 55.000 0.00 0.00 34.43 3.91
3402 4811 0.651031 GTTCGGTTCGCCTATGCTTC 59.349 55.000 0.00 0.00 34.43 3.86
3403 4812 0.535335 TTCGGTTCGCCTATGCTTCT 59.465 50.000 0.00 0.00 34.43 2.85
3404 4813 0.535335 TCGGTTCGCCTATGCTTCTT 59.465 50.000 0.00 0.00 34.43 2.52
3405 4814 0.931005 CGGTTCGCCTATGCTTCTTC 59.069 55.000 0.00 0.00 34.43 2.87
3406 4815 1.300481 GGTTCGCCTATGCTTCTTCC 58.700 55.000 0.00 0.00 34.43 3.46
3407 4816 0.931005 GTTCGCCTATGCTTCTTCCG 59.069 55.000 0.00 0.00 34.43 4.30
3408 4817 0.535335 TTCGCCTATGCTTCTTCCGT 59.465 50.000 0.00 0.00 34.43 4.69
3409 4818 0.179111 TCGCCTATGCTTCTTCCGTG 60.179 55.000 0.00 0.00 34.43 4.94
3410 4819 1.766143 CGCCTATGCTTCTTCCGTGC 61.766 60.000 0.00 0.00 34.43 5.34
3411 4820 1.440145 GCCTATGCTTCTTCCGTGCC 61.440 60.000 0.00 0.00 33.53 5.01
3412 4821 0.107703 CCTATGCTTCTTCCGTGCCA 60.108 55.000 0.00 0.00 0.00 4.92
3413 4822 1.293924 CTATGCTTCTTCCGTGCCAG 58.706 55.000 0.00 0.00 0.00 4.85
3414 4823 0.744414 TATGCTTCTTCCGTGCCAGC 60.744 55.000 0.00 0.00 0.00 4.85
3415 4824 3.793144 GCTTCTTCCGTGCCAGCG 61.793 66.667 0.00 0.00 0.00 5.18
3416 4825 3.793144 CTTCTTCCGTGCCAGCGC 61.793 66.667 0.00 0.00 0.00 5.92
3423 4832 4.980903 CGTGCCAGCGCCAACAAC 62.981 66.667 2.29 0.00 0.00 3.32
3424 4833 3.898509 GTGCCAGCGCCAACAACA 61.899 61.111 2.29 0.00 0.00 3.33
3425 4834 3.143515 TGCCAGCGCCAACAACAA 61.144 55.556 2.29 0.00 0.00 2.83
3426 4835 2.355009 GCCAGCGCCAACAACAAG 60.355 61.111 2.29 0.00 0.00 3.16
3427 4836 2.355009 CCAGCGCCAACAACAAGC 60.355 61.111 2.29 0.00 0.00 4.01
3428 4837 2.412525 CAGCGCCAACAACAAGCA 59.587 55.556 2.29 0.00 0.00 3.91
3429 4838 1.007038 CAGCGCCAACAACAAGCAT 60.007 52.632 2.29 0.00 0.00 3.79
3430 4839 1.007038 AGCGCCAACAACAAGCATG 60.007 52.632 2.29 0.00 0.00 4.06
3431 4840 2.660612 GCGCCAACAACAAGCATGC 61.661 57.895 10.51 10.51 0.00 4.06
3432 4841 1.300003 CGCCAACAACAAGCATGCA 60.300 52.632 21.98 0.00 0.00 3.96
3433 4842 1.550659 CGCCAACAACAAGCATGCAC 61.551 55.000 21.98 0.00 0.00 4.57
3434 4843 0.530211 GCCAACAACAAGCATGCACA 60.530 50.000 21.98 0.00 0.00 4.57
3435 4844 1.210870 CCAACAACAAGCATGCACAC 58.789 50.000 21.98 0.00 0.00 3.82
3436 4845 1.471153 CCAACAACAAGCATGCACACA 60.471 47.619 21.98 0.00 0.00 3.72
3437 4846 1.855978 CAACAACAAGCATGCACACAG 59.144 47.619 21.98 9.13 0.00 3.66
3438 4847 0.386476 ACAACAAGCATGCACACAGG 59.614 50.000 21.98 7.08 0.00 4.00
3439 4848 0.669619 CAACAAGCATGCACACAGGA 59.330 50.000 21.98 0.00 0.00 3.86
3440 4849 0.956633 AACAAGCATGCACACAGGAG 59.043 50.000 21.98 2.50 0.00 3.69
3441 4850 1.211969 CAAGCATGCACACAGGAGC 59.788 57.895 21.98 0.00 0.00 4.70
3442 4851 2.330372 AAGCATGCACACAGGAGCG 61.330 57.895 21.98 0.00 32.83 5.03
3443 4852 4.471726 GCATGCACACAGGAGCGC 62.472 66.667 14.21 0.00 32.83 5.92
3444 4853 2.745100 CATGCACACAGGAGCGCT 60.745 61.111 11.27 11.27 32.83 5.92
3445 4854 2.745100 ATGCACACAGGAGCGCTG 60.745 61.111 18.48 3.41 32.83 5.18
3446 4855 3.541950 ATGCACACAGGAGCGCTGT 62.542 57.895 18.48 4.28 32.83 4.40
3447 4856 2.974698 GCACACAGGAGCGCTGTT 60.975 61.111 18.48 0.00 31.99 3.16
3448 4857 2.941333 CACACAGGAGCGCTGTTG 59.059 61.111 18.48 15.83 31.99 3.33
3449 4858 2.281070 ACACAGGAGCGCTGTTGG 60.281 61.111 18.48 9.39 31.99 3.77
3450 4859 3.052082 CACAGGAGCGCTGTTGGG 61.052 66.667 18.48 10.59 31.99 4.12
3451 4860 4.335647 ACAGGAGCGCTGTTGGGG 62.336 66.667 18.48 0.00 0.00 4.96
3452 4861 4.020617 CAGGAGCGCTGTTGGGGA 62.021 66.667 18.48 0.00 0.00 4.81
3453 4862 3.710722 AGGAGCGCTGTTGGGGAG 61.711 66.667 18.48 0.00 0.00 4.30
3454 4863 4.785453 GGAGCGCTGTTGGGGAGG 62.785 72.222 18.48 0.00 0.00 4.30
3455 4864 3.706373 GAGCGCTGTTGGGGAGGA 61.706 66.667 18.48 0.00 0.00 3.71
3456 4865 3.249189 AGCGCTGTTGGGGAGGAA 61.249 61.111 10.39 0.00 0.00 3.36
3457 4866 2.282180 GCGCTGTTGGGGAGGAAA 60.282 61.111 0.00 0.00 0.00 3.13
3458 4867 1.901464 GCGCTGTTGGGGAGGAAAA 60.901 57.895 0.00 0.00 0.00 2.29
3459 4868 1.460273 GCGCTGTTGGGGAGGAAAAA 61.460 55.000 0.00 0.00 0.00 1.94
3460 4869 1.256812 CGCTGTTGGGGAGGAAAAAT 58.743 50.000 0.00 0.00 0.00 1.82
3461 4870 1.202348 CGCTGTTGGGGAGGAAAAATC 59.798 52.381 0.00 0.00 0.00 2.17
3462 4871 1.202348 GCTGTTGGGGAGGAAAAATCG 59.798 52.381 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.914435 ACCTCCTTTCCAGTTTAGGCTAA 59.086 43.478 2.04 2.04 0.00 3.09
73 74 1.134431 CCTTTGGCCTTTGCACACTTT 60.134 47.619 3.32 0.00 40.13 2.66
154 155 5.681639 ACAATTATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
155 156 5.427481 AGACAATTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
156 157 5.681639 AGACAATTATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
157 158 7.553044 AGAAAGACAATTATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
158 159 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
159 160 9.595823 CTAGAAAGACAATTATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
160 161 9.595823 TCTAGAAAGACAATTATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
173 174 9.566432 ACTTGTTGAAATCTCTAGAAAGACAAT 57.434 29.630 0.00 0.00 0.00 2.71
174 175 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
175 176 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
176 177 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
177 178 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
178 179 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
179 180 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
180 181 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
181 182 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
182 183 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
183 184 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
184 185 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
185 186 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
186 187 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
187 188 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
188 189 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
189 190 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
190 191 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
191 192 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
192 193 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
193 194 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
194 195 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
195 196 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
196 197 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
197 198 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
198 199 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
199 200 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
200 201 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
201 202 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
202 203 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
203 204 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
204 205 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
205 206 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
206 207 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
207 208 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
208 209 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
209 210 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
210 211 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
211 212 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
212 213 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
219 220 9.725019 ACATGTTTTAGAGTGTAGATTCATTCA 57.275 29.630 0.00 0.00 0.00 2.57
221 222 9.950496 AGACATGTTTTAGAGTGTAGATTCATT 57.050 29.630 0.00 0.00 0.00 2.57
223 224 9.856488 GTAGACATGTTTTAGAGTGTAGATTCA 57.144 33.333 0.00 0.00 0.00 2.57
224 225 9.856488 TGTAGACATGTTTTAGAGTGTAGATTC 57.144 33.333 0.00 0.00 0.00 2.52
230 231 9.587772 GATGTATGTAGACATGTTTTAGAGTGT 57.412 33.333 0.00 0.00 40.18 3.55
231 232 9.035607 GGATGTATGTAGACATGTTTTAGAGTG 57.964 37.037 0.00 0.00 40.18 3.51
232 233 7.921214 CGGATGTATGTAGACATGTTTTAGAGT 59.079 37.037 0.00 0.00 40.18 3.24
233 234 7.921214 ACGGATGTATGTAGACATGTTTTAGAG 59.079 37.037 0.00 0.00 40.18 2.43
234 235 7.778083 ACGGATGTATGTAGACATGTTTTAGA 58.222 34.615 0.00 0.00 40.18 2.10
235 236 9.692749 ATACGGATGTATGTAGACATGTTTTAG 57.307 33.333 0.00 0.00 40.18 1.85
239 240 9.639601 CAATATACGGATGTATGTAGACATGTT 57.360 33.333 0.00 0.00 41.37 2.71
240 241 8.803235 ACAATATACGGATGTATGTAGACATGT 58.197 33.333 0.00 0.00 41.37 3.21
243 244 9.511272 ACTACAATATACGGATGTATGTAGACA 57.489 33.333 24.44 0.00 40.69 3.41
244 245 9.985318 GACTACAATATACGGATGTATGTAGAC 57.015 37.037 24.44 18.37 40.69 2.59
245 246 9.170734 GGACTACAATATACGGATGTATGTAGA 57.829 37.037 24.44 2.20 40.69 2.59
246 247 8.953313 TGGACTACAATATACGGATGTATGTAG 58.047 37.037 19.56 19.56 42.27 2.74
247 248 8.866970 TGGACTACAATATACGGATGTATGTA 57.133 34.615 0.00 0.00 41.37 2.29
248 249 7.770366 TGGACTACAATATACGGATGTATGT 57.230 36.000 0.00 0.00 41.37 2.29
249 250 9.653287 AAATGGACTACAATATACGGATGTATG 57.347 33.333 0.00 0.00 41.37 2.39
250 251 9.653287 CAAATGGACTACAATATACGGATGTAT 57.347 33.333 0.00 0.00 43.62 2.29
251 252 8.862085 TCAAATGGACTACAATATACGGATGTA 58.138 33.333 0.00 0.00 34.45 2.29
252 253 7.732025 TCAAATGGACTACAATATACGGATGT 58.268 34.615 0.00 0.00 0.00 3.06
253 254 8.088365 TCTCAAATGGACTACAATATACGGATG 58.912 37.037 0.00 0.00 0.00 3.51
254 255 8.190326 TCTCAAATGGACTACAATATACGGAT 57.810 34.615 0.00 0.00 0.00 4.18
255 256 7.591421 TCTCAAATGGACTACAATATACGGA 57.409 36.000 0.00 0.00 0.00 4.69
256 257 7.331934 CCATCTCAAATGGACTACAATATACGG 59.668 40.741 0.00 0.00 41.64 4.02
257 258 7.148573 GCCATCTCAAATGGACTACAATATACG 60.149 40.741 8.23 0.00 41.64 3.06
258 259 7.880195 AGCCATCTCAAATGGACTACAATATAC 59.120 37.037 8.23 0.00 41.64 1.47
259 260 7.977818 AGCCATCTCAAATGGACTACAATATA 58.022 34.615 8.23 0.00 41.64 0.86
260 261 6.845908 AGCCATCTCAAATGGACTACAATAT 58.154 36.000 8.23 0.00 41.64 1.28
261 262 6.252599 AGCCATCTCAAATGGACTACAATA 57.747 37.500 8.23 0.00 41.64 1.90
262 263 5.121380 AGCCATCTCAAATGGACTACAAT 57.879 39.130 8.23 0.00 41.64 2.71
263 264 4.574674 AGCCATCTCAAATGGACTACAA 57.425 40.909 8.23 0.00 41.64 2.41
264 265 4.962362 TCTAGCCATCTCAAATGGACTACA 59.038 41.667 8.23 0.00 41.64 2.74
265 266 5.537300 TCTAGCCATCTCAAATGGACTAC 57.463 43.478 8.23 0.00 41.64 2.73
266 267 6.384015 TCTTTCTAGCCATCTCAAATGGACTA 59.616 38.462 8.23 7.79 41.64 2.59
267 268 5.190528 TCTTTCTAGCCATCTCAAATGGACT 59.809 40.000 8.23 7.12 41.64 3.85
268 269 5.295540 GTCTTTCTAGCCATCTCAAATGGAC 59.704 44.000 8.23 0.19 41.64 4.02
269 270 5.045651 TGTCTTTCTAGCCATCTCAAATGGA 60.046 40.000 8.23 0.00 41.64 3.41
270 271 5.188434 TGTCTTTCTAGCCATCTCAAATGG 58.812 41.667 0.00 0.00 41.99 3.16
271 272 6.748333 TTGTCTTTCTAGCCATCTCAAATG 57.252 37.500 0.00 0.00 0.00 2.32
272 273 7.951347 AATTGTCTTTCTAGCCATCTCAAAT 57.049 32.000 0.00 0.00 0.00 2.32
273 274 9.466497 AATAATTGTCTTTCTAGCCATCTCAAA 57.534 29.630 0.00 0.00 0.00 2.69
274 275 9.466497 AAATAATTGTCTTTCTAGCCATCTCAA 57.534 29.630 0.00 0.00 0.00 3.02
275 276 8.896744 CAAATAATTGTCTTTCTAGCCATCTCA 58.103 33.333 0.00 0.00 0.00 3.27
276 277 8.348507 CCAAATAATTGTCTTTCTAGCCATCTC 58.651 37.037 0.00 0.00 34.60 2.75
277 278 7.286316 CCCAAATAATTGTCTTTCTAGCCATCT 59.714 37.037 0.00 0.00 34.60 2.90
278 279 7.285401 TCCCAAATAATTGTCTTTCTAGCCATC 59.715 37.037 0.00 0.00 34.60 3.51
279 280 7.125391 TCCCAAATAATTGTCTTTCTAGCCAT 58.875 34.615 0.00 0.00 34.60 4.40
280 281 6.489603 TCCCAAATAATTGTCTTTCTAGCCA 58.510 36.000 0.00 0.00 34.60 4.75
281 282 7.258441 GTTCCCAAATAATTGTCTTTCTAGCC 58.742 38.462 0.00 0.00 34.60 3.93
282 283 6.967199 CGTTCCCAAATAATTGTCTTTCTAGC 59.033 38.462 0.00 0.00 34.60 3.42
283 284 7.335924 TCCGTTCCCAAATAATTGTCTTTCTAG 59.664 37.037 0.00 0.00 34.60 2.43
284 285 7.169591 TCCGTTCCCAAATAATTGTCTTTCTA 58.830 34.615 0.00 0.00 34.60 2.10
285 286 6.007703 TCCGTTCCCAAATAATTGTCTTTCT 58.992 36.000 0.00 0.00 34.60 2.52
286 287 6.262193 TCCGTTCCCAAATAATTGTCTTTC 57.738 37.500 0.00 0.00 34.60 2.62
287 288 5.185056 CCTCCGTTCCCAAATAATTGTCTTT 59.815 40.000 0.00 0.00 34.60 2.52
288 289 4.705023 CCTCCGTTCCCAAATAATTGTCTT 59.295 41.667 0.00 0.00 34.60 3.01
289 290 4.270008 CCTCCGTTCCCAAATAATTGTCT 58.730 43.478 0.00 0.00 34.60 3.41
290 291 3.380320 CCCTCCGTTCCCAAATAATTGTC 59.620 47.826 0.00 0.00 34.60 3.18
291 292 3.010808 TCCCTCCGTTCCCAAATAATTGT 59.989 43.478 0.00 0.00 34.60 2.71
292 293 3.626930 TCCCTCCGTTCCCAAATAATTG 58.373 45.455 0.00 0.00 36.25 2.32
293 294 3.268595 ACTCCCTCCGTTCCCAAATAATT 59.731 43.478 0.00 0.00 0.00 1.40
294 295 2.850568 ACTCCCTCCGTTCCCAAATAAT 59.149 45.455 0.00 0.00 0.00 1.28
295 296 2.271777 ACTCCCTCCGTTCCCAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
296 297 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
297 298 1.558294 GTACTCCCTCCGTTCCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
298 299 0.978907 GTACTCCCTCCGTTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
299 300 0.178926 TGTACTCCCTCCGTTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
300 301 0.042131 ATGTACTCCCTCCGTTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
301 302 0.464452 CATGTACTCCCTCCGTTCCC 59.536 60.000 0.00 0.00 0.00 3.97
302 303 0.464452 CCATGTACTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
303 304 1.134788 CACCATGTACTCCCTCCGTTC 60.135 57.143 0.00 0.00 0.00 3.95
304 305 0.902531 CACCATGTACTCCCTCCGTT 59.097 55.000 0.00 0.00 0.00 4.44
305 306 0.976073 CCACCATGTACTCCCTCCGT 60.976 60.000 0.00 0.00 0.00 4.69
306 307 0.976073 ACCACCATGTACTCCCTCCG 60.976 60.000 0.00 0.00 0.00 4.63
307 308 0.541863 CACCACCATGTACTCCCTCC 59.458 60.000 0.00 0.00 0.00 4.30
308 309 1.066143 CACACCACCATGTACTCCCTC 60.066 57.143 0.00 0.00 0.00 4.30
309 310 0.984230 CACACCACCATGTACTCCCT 59.016 55.000 0.00 0.00 0.00 4.20
310 311 0.035439 CCACACCACCATGTACTCCC 60.035 60.000 0.00 0.00 0.00 4.30
311 312 0.981183 TCCACACCACCATGTACTCC 59.019 55.000 0.00 0.00 0.00 3.85
312 313 2.615493 CCTTCCACACCACCATGTACTC 60.615 54.545 0.00 0.00 0.00 2.59
313 314 1.351017 CCTTCCACACCACCATGTACT 59.649 52.381 0.00 0.00 0.00 2.73
314 315 1.613255 CCCTTCCACACCACCATGTAC 60.613 57.143 0.00 0.00 0.00 2.90
315 316 0.695924 CCCTTCCACACCACCATGTA 59.304 55.000 0.00 0.00 0.00 2.29
316 317 1.065410 TCCCTTCCACACCACCATGT 61.065 55.000 0.00 0.00 0.00 3.21
357 358 4.642885 CCCTGTAAACTGAGAGAGAGGTAG 59.357 50.000 0.00 0.00 0.00 3.18
358 359 4.601084 CCCTGTAAACTGAGAGAGAGGTA 58.399 47.826 0.00 0.00 0.00 3.08
359 360 3.436243 CCCTGTAAACTGAGAGAGAGGT 58.564 50.000 0.00 0.00 0.00 3.85
360 361 2.167487 GCCCTGTAAACTGAGAGAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
361 362 2.159310 CGCCCTGTAAACTGAGAGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
362 363 1.819288 CGCCCTGTAAACTGAGAGAGA 59.181 52.381 0.00 0.00 0.00 3.10
363 364 1.546476 ACGCCCTGTAAACTGAGAGAG 59.454 52.381 0.00 0.00 0.00 3.20
364 365 1.272490 CACGCCCTGTAAACTGAGAGA 59.728 52.381 0.00 0.00 0.00 3.10
365 366 1.714794 CACGCCCTGTAAACTGAGAG 58.285 55.000 0.00 0.00 0.00 3.20
366 367 0.320421 GCACGCCCTGTAAACTGAGA 60.320 55.000 0.00 0.00 0.00 3.27
367 368 0.602638 TGCACGCCCTGTAAACTGAG 60.603 55.000 0.00 0.00 0.00 3.35
368 369 0.882927 GTGCACGCCCTGTAAACTGA 60.883 55.000 0.00 0.00 0.00 3.41
369 370 1.574428 GTGCACGCCCTGTAAACTG 59.426 57.895 0.00 0.00 0.00 3.16
370 371 1.959226 CGTGCACGCCCTGTAAACT 60.959 57.895 28.16 0.00 0.00 2.66
371 372 0.945265 TACGTGCACGCCCTGTAAAC 60.945 55.000 37.35 0.00 44.43 2.01
372 373 0.945265 GTACGTGCACGCCCTGTAAA 60.945 55.000 37.35 11.10 44.43 2.01
373 374 1.373246 GTACGTGCACGCCCTGTAA 60.373 57.895 37.35 12.50 44.43 2.41
374 375 2.259204 GTACGTGCACGCCCTGTA 59.741 61.111 37.35 19.88 44.43 2.74
375 376 4.675029 GGTACGTGCACGCCCTGT 62.675 66.667 37.35 20.98 44.43 4.00
380 381 2.202703 CTAGGGGTACGTGCACGC 60.203 66.667 37.35 22.55 44.43 5.34
381 382 2.345760 ACCTAGGGGTACGTGCACG 61.346 63.158 35.99 35.99 45.32 5.34
382 383 3.704151 ACCTAGGGGTACGTGCAC 58.296 61.111 14.81 6.82 45.32 4.57
388 389 4.916984 GTCAAATTGACGACCTAGGGGTAC 60.917 50.000 14.81 2.61 40.90 3.34
389 390 3.196254 GTCAAATTGACGACCTAGGGGTA 59.804 47.826 14.81 0.00 40.90 3.69
390 391 2.027469 GTCAAATTGACGACCTAGGGGT 60.027 50.000 14.81 10.74 42.37 4.95
391 392 2.629051 GTCAAATTGACGACCTAGGGG 58.371 52.381 14.81 7.16 37.67 4.79
401 402 7.882179 ACTTGTATTAGGTTGGTCAAATTGAC 58.118 34.615 17.16 17.16 46.23 3.18
402 403 7.721842 TGACTTGTATTAGGTTGGTCAAATTGA 59.278 33.333 0.00 0.00 30.81 2.57
403 404 7.881142 TGACTTGTATTAGGTTGGTCAAATTG 58.119 34.615 0.00 0.00 30.81 2.32
404 405 8.650143 ATGACTTGTATTAGGTTGGTCAAATT 57.350 30.769 0.00 0.00 36.16 1.82
405 406 9.920946 ATATGACTTGTATTAGGTTGGTCAAAT 57.079 29.630 0.00 0.00 36.16 2.32
446 447 9.520515 AATAGAACATCTGAAGTTTATGTTGGT 57.479 29.630 13.65 6.63 42.35 3.67
454 455 9.971922 CTTTGGAAAATAGAACATCTGAAGTTT 57.028 29.630 0.00 0.00 0.00 2.66
455 456 9.354673 TCTTTGGAAAATAGAACATCTGAAGTT 57.645 29.630 0.00 0.00 0.00 2.66
456 457 8.924511 TCTTTGGAAAATAGAACATCTGAAGT 57.075 30.769 0.00 0.00 0.00 3.01
503 504 9.605951 AGGTTGCCAATTTTATCATCCTAATAT 57.394 29.630 0.00 0.00 29.56 1.28
505 506 7.919385 AGGTTGCCAATTTTATCATCCTAAT 57.081 32.000 0.00 0.00 29.56 1.73
506 507 7.505585 CCTAGGTTGCCAATTTTATCATCCTAA 59.494 37.037 0.00 0.00 33.19 2.69
507 508 7.004086 CCTAGGTTGCCAATTTTATCATCCTA 58.996 38.462 0.00 0.00 32.62 2.94
508 509 5.835280 CCTAGGTTGCCAATTTTATCATCCT 59.165 40.000 0.00 0.00 34.23 3.24
509 510 5.598417 ACCTAGGTTGCCAATTTTATCATCC 59.402 40.000 9.21 0.00 0.00 3.51
510 511 6.715347 ACCTAGGTTGCCAATTTTATCATC 57.285 37.500 9.21 0.00 0.00 2.92
511 512 9.297037 GTATACCTAGGTTGCCAATTTTATCAT 57.703 33.333 22.11 4.48 0.00 2.45
512 513 7.442969 CGTATACCTAGGTTGCCAATTTTATCA 59.557 37.037 22.11 0.00 0.00 2.15
513 514 7.572539 GCGTATACCTAGGTTGCCAATTTTATC 60.573 40.741 22.11 0.00 0.00 1.75
514 515 6.206048 GCGTATACCTAGGTTGCCAATTTTAT 59.794 38.462 22.11 5.71 0.00 1.40
515 516 5.528320 GCGTATACCTAGGTTGCCAATTTTA 59.472 40.000 22.11 0.00 0.00 1.52
516 517 4.337274 GCGTATACCTAGGTTGCCAATTTT 59.663 41.667 22.11 0.00 0.00 1.82
517 518 3.881089 GCGTATACCTAGGTTGCCAATTT 59.119 43.478 22.11 0.00 0.00 1.82
518 519 3.118186 TGCGTATACCTAGGTTGCCAATT 60.118 43.478 22.11 0.00 0.00 2.32
519 520 2.436542 TGCGTATACCTAGGTTGCCAAT 59.563 45.455 22.11 9.64 0.00 3.16
520 521 1.832366 TGCGTATACCTAGGTTGCCAA 59.168 47.619 22.11 0.75 0.00 4.52
521 522 1.487300 TGCGTATACCTAGGTTGCCA 58.513 50.000 22.11 1.21 0.00 4.92
522 523 2.833631 ATGCGTATACCTAGGTTGCC 57.166 50.000 22.11 7.02 0.00 4.52
523 524 3.508793 TCCTATGCGTATACCTAGGTTGC 59.491 47.826 22.11 18.70 33.81 4.17
524 525 4.765856 AGTCCTATGCGTATACCTAGGTTG 59.234 45.833 22.11 9.15 33.81 3.77
525 526 4.995536 AGTCCTATGCGTATACCTAGGTT 58.004 43.478 22.11 10.62 33.81 3.50
526 527 4.654389 AGTCCTATGCGTATACCTAGGT 57.346 45.455 20.57 20.57 33.81 3.08
527 528 4.765856 ACAAGTCCTATGCGTATACCTAGG 59.234 45.833 7.41 7.41 33.46 3.02
528 529 5.961396 ACAAGTCCTATGCGTATACCTAG 57.039 43.478 0.00 0.00 0.00 3.02
529 530 7.503566 AGTTTACAAGTCCTATGCGTATACCTA 59.496 37.037 0.00 0.00 0.00 3.08
530 531 6.323225 AGTTTACAAGTCCTATGCGTATACCT 59.677 38.462 0.00 0.00 0.00 3.08
531 532 6.420008 CAGTTTACAAGTCCTATGCGTATACC 59.580 42.308 0.00 0.00 0.00 2.73
532 533 7.198390 TCAGTTTACAAGTCCTATGCGTATAC 58.802 38.462 0.00 0.00 0.00 1.47
533 534 7.283807 TCTCAGTTTACAAGTCCTATGCGTATA 59.716 37.037 0.00 0.00 0.00 1.47
534 535 6.096423 TCTCAGTTTACAAGTCCTATGCGTAT 59.904 38.462 0.00 0.00 0.00 3.06
535 536 5.416639 TCTCAGTTTACAAGTCCTATGCGTA 59.583 40.000 0.00 0.00 0.00 4.42
536 537 4.219944 TCTCAGTTTACAAGTCCTATGCGT 59.780 41.667 0.00 0.00 0.00 5.24
537 538 4.563184 GTCTCAGTTTACAAGTCCTATGCG 59.437 45.833 0.00 0.00 0.00 4.73
538 539 4.563184 CGTCTCAGTTTACAAGTCCTATGC 59.437 45.833 0.00 0.00 0.00 3.14
539 540 5.103000 CCGTCTCAGTTTACAAGTCCTATG 58.897 45.833 0.00 0.00 0.00 2.23
540 541 5.014858 TCCGTCTCAGTTTACAAGTCCTAT 58.985 41.667 0.00 0.00 0.00 2.57
541 542 4.401022 TCCGTCTCAGTTTACAAGTCCTA 58.599 43.478 0.00 0.00 0.00 2.94
542 543 3.228453 TCCGTCTCAGTTTACAAGTCCT 58.772 45.455 0.00 0.00 0.00 3.85
543 544 3.576648 CTCCGTCTCAGTTTACAAGTCC 58.423 50.000 0.00 0.00 0.00 3.85
544 545 3.576648 CCTCCGTCTCAGTTTACAAGTC 58.423 50.000 0.00 0.00 0.00 3.01
545 546 2.299297 CCCTCCGTCTCAGTTTACAAGT 59.701 50.000 0.00 0.00 0.00 3.16
546 547 2.561419 TCCCTCCGTCTCAGTTTACAAG 59.439 50.000 0.00 0.00 0.00 3.16
547 548 2.561419 CTCCCTCCGTCTCAGTTTACAA 59.439 50.000 0.00 0.00 0.00 2.41
548 549 2.168496 CTCCCTCCGTCTCAGTTTACA 58.832 52.381 0.00 0.00 0.00 2.41
549 550 2.169330 ACTCCCTCCGTCTCAGTTTAC 58.831 52.381 0.00 0.00 0.00 2.01
550 551 2.599408 ACTCCCTCCGTCTCAGTTTA 57.401 50.000 0.00 0.00 0.00 2.01
551 552 2.599408 TACTCCCTCCGTCTCAGTTT 57.401 50.000 0.00 0.00 0.00 2.66
552 553 2.830651 ATACTCCCTCCGTCTCAGTT 57.169 50.000 0.00 0.00 0.00 3.16
553 554 2.830651 AATACTCCCTCCGTCTCAGT 57.169 50.000 0.00 0.00 0.00 3.41
554 555 3.430929 CCAAAATACTCCCTCCGTCTCAG 60.431 52.174 0.00 0.00 0.00 3.35
555 556 2.500098 CCAAAATACTCCCTCCGTCTCA 59.500 50.000 0.00 0.00 0.00 3.27
556 557 2.764572 TCCAAAATACTCCCTCCGTCTC 59.235 50.000 0.00 0.00 0.00 3.36
557 558 2.829023 TCCAAAATACTCCCTCCGTCT 58.171 47.619 0.00 0.00 0.00 4.18
558 559 3.840124 ATCCAAAATACTCCCTCCGTC 57.160 47.619 0.00 0.00 0.00 4.79
559 560 3.521937 TGAATCCAAAATACTCCCTCCGT 59.478 43.478 0.00 0.00 0.00 4.69
560 561 4.150897 TGAATCCAAAATACTCCCTCCG 57.849 45.455 0.00 0.00 0.00 4.63
561 562 9.807921 TTAATATGAATCCAAAATACTCCCTCC 57.192 33.333 0.00 0.00 0.00 4.30
570 571 9.902684 TGGTTGCATTTAATATGAATCCAAAAT 57.097 25.926 0.00 0.00 0.00 1.82
644 648 5.979517 GGTTTGGCTGCATTTACTATGAATC 59.020 40.000 0.50 0.00 0.00 2.52
739 743 5.570844 GCACTTCCATGTAGAGAAGGGTTTA 60.571 44.000 11.73 0.00 43.95 2.01
909 1549 2.434336 TGCGTATCCCTTGCATACTTCT 59.566 45.455 0.00 0.00 32.86 2.85
1894 2861 0.599060 GAGCTATGCTCGGGGTAGAC 59.401 60.000 3.73 0.00 45.85 2.59
2162 3395 2.343758 GCGAGAAGTGGGAGTGCA 59.656 61.111 0.00 0.00 0.00 4.57
2234 3473 2.293122 TGCTCATGCACTACAAACAACC 59.707 45.455 0.00 0.00 45.31 3.77
2250 3489 1.159285 CGAGGCAAATGTCTTGCTCA 58.841 50.000 9.15 0.00 44.36 4.26
2366 3605 1.377202 TCATTGCAGTTCTCGGGGC 60.377 57.895 0.00 0.00 0.00 5.80
2481 3747 6.804677 TGTTTGTTTGTGCACTCTCATTATT 58.195 32.000 19.41 0.00 0.00 1.40
2557 3823 5.324697 CGGAGCTAGCTGTTTAAAATGAAC 58.675 41.667 24.99 1.97 0.00 3.18
2558 3824 5.545658 CGGAGCTAGCTGTTTAAAATGAA 57.454 39.130 24.99 0.00 0.00 2.57
2590 3856 2.595009 GATTGGCTCACGGGGTCTCC 62.595 65.000 0.00 0.00 0.00 3.71
2598 3864 3.723172 CCATCCGATTGGCTCACG 58.277 61.111 0.00 0.00 34.14 4.35
2621 3887 1.035932 AGCCGGTACACTCTATGCGT 61.036 55.000 1.90 0.00 0.00 5.24
2632 3898 5.116882 AGATAAATGAGTTTCAGCCGGTAC 58.883 41.667 1.90 0.00 0.00 3.34
2639 3905 8.383619 CGGAGTAACAAGATAAATGAGTTTCAG 58.616 37.037 0.00 0.00 0.00 3.02
2640 3906 8.092068 TCGGAGTAACAAGATAAATGAGTTTCA 58.908 33.333 0.00 0.00 0.00 2.69
2641 3907 8.475331 TCGGAGTAACAAGATAAATGAGTTTC 57.525 34.615 0.00 0.00 0.00 2.78
2643 3909 8.041323 ACATCGGAGTAACAAGATAAATGAGTT 58.959 33.333 0.00 0.00 0.00 3.01
2644 3910 7.556844 ACATCGGAGTAACAAGATAAATGAGT 58.443 34.615 0.00 0.00 0.00 3.41
2804 4080 9.352784 TGTCACTGAAATAACTGAAAACTTTTG 57.647 29.630 0.00 0.00 0.00 2.44
2816 4092 9.944663 TGTGTTTTCTAATGTCACTGAAATAAC 57.055 29.630 0.00 0.00 0.00 1.89
2996 4377 9.683069 ATTTCTTTTGCTTCTATATATTTGCGG 57.317 29.630 0.00 0.00 0.00 5.69
3111 4517 5.977725 GTGTATGTGTGTATCTATGAGCGTT 59.022 40.000 0.00 0.00 0.00 4.84
3126 4532 7.992608 TGCATTCATAAGGATAAGTGTATGTGT 59.007 33.333 0.00 0.00 0.00 3.72
3139 4545 2.689471 GGTGTGCATGCATTCATAAGGA 59.311 45.455 25.64 0.00 0.00 3.36
3153 4559 1.195442 TCGGAATGGTAGGGTGTGCA 61.195 55.000 0.00 0.00 0.00 4.57
3166 4572 3.071023 TGTCTCTCAAAGGTGTTCGGAAT 59.929 43.478 0.00 0.00 0.00 3.01
3173 4579 1.346068 GGCTCTGTCTCTCAAAGGTGT 59.654 52.381 0.00 0.00 0.00 4.16
3179 4585 0.598562 GTGTCGGCTCTGTCTCTCAA 59.401 55.000 0.00 0.00 0.00 3.02
3252 4658 3.921677 TGTTCGTTCAGTGGGAATAGAC 58.078 45.455 0.00 0.00 37.93 2.59
3264 4670 1.872388 TTTCCAGCGATGTTCGTTCA 58.128 45.000 0.00 0.00 42.81 3.18
3269 4675 9.997482 TTTAATTTAGTATTTCCAGCGATGTTC 57.003 29.630 0.00 0.00 0.00 3.18
3288 4694 7.148086 TGGCTCGCATGTTTCTAGATTTAATTT 60.148 33.333 0.00 0.00 0.00 1.82
3298 4704 1.001974 ACTGTGGCTCGCATGTTTCTA 59.998 47.619 0.00 0.00 0.00 2.10
3304 4710 3.807538 GGCACTGTGGCTCGCATG 61.808 66.667 25.10 0.00 40.14 4.06
3313 4719 7.920682 GGGATTAATTTAGTATTTGGCACTGTG 59.079 37.037 2.76 2.76 0.00 3.66
3314 4720 7.839200 AGGGATTAATTTAGTATTTGGCACTGT 59.161 33.333 0.00 0.00 0.00 3.55
3324 4730 6.706270 CAGCACACGAGGGATTAATTTAGTAT 59.294 38.462 0.00 0.00 0.00 2.12
3325 4731 6.046593 CAGCACACGAGGGATTAATTTAGTA 58.953 40.000 0.00 0.00 0.00 1.82
3326 4732 4.876107 CAGCACACGAGGGATTAATTTAGT 59.124 41.667 0.00 0.00 0.00 2.24
3327 4733 4.273480 CCAGCACACGAGGGATTAATTTAG 59.727 45.833 0.00 0.00 0.00 1.85
3328 4734 4.196193 CCAGCACACGAGGGATTAATTTA 58.804 43.478 0.00 0.00 0.00 1.40
3329 4735 3.016736 CCAGCACACGAGGGATTAATTT 58.983 45.455 0.00 0.00 0.00 1.82
3331 4737 1.559682 ACCAGCACACGAGGGATTAAT 59.440 47.619 0.00 0.00 0.00 1.40
3334 4740 0.321653 GAACCAGCACACGAGGGATT 60.322 55.000 0.00 0.00 0.00 3.01
3336 4742 2.741092 GAACCAGCACACGAGGGA 59.259 61.111 0.00 0.00 0.00 4.20
3339 4745 3.642755 GTGGAACCAGCACACGAG 58.357 61.111 0.00 0.00 0.00 4.18
3365 4771 4.262079 CCGAACCTAGCTTAGATGGTTAGG 60.262 50.000 12.98 12.98 44.46 2.69
3392 4801 1.440145 GGCACGGAAGAAGCATAGGC 61.440 60.000 0.00 0.00 41.61 3.93
3393 4802 0.107703 TGGCACGGAAGAAGCATAGG 60.108 55.000 0.00 0.00 37.39 2.57
3394 4803 1.293924 CTGGCACGGAAGAAGCATAG 58.706 55.000 0.00 0.00 36.31 2.23
3395 4804 0.744414 GCTGGCACGGAAGAAGCATA 60.744 55.000 0.00 0.00 36.31 3.14
3396 4805 2.042831 GCTGGCACGGAAGAAGCAT 61.043 57.895 0.00 0.00 36.31 3.79
3397 4806 2.669569 GCTGGCACGGAAGAAGCA 60.670 61.111 0.00 0.00 36.31 3.91
3398 4807 3.793144 CGCTGGCACGGAAGAAGC 61.793 66.667 2.23 0.00 36.31 3.86
3399 4808 3.793144 GCGCTGGCACGGAAGAAG 61.793 66.667 0.00 0.00 39.62 2.85
3406 4815 4.980903 GTTGTTGGCGCTGGCACG 62.981 66.667 7.64 5.33 42.47 5.34
3407 4816 3.423162 TTGTTGTTGGCGCTGGCAC 62.423 57.895 7.64 0.00 42.47 5.01
3408 4817 3.136345 CTTGTTGTTGGCGCTGGCA 62.136 57.895 7.64 0.13 42.47 4.92
3409 4818 2.355009 CTTGTTGTTGGCGCTGGC 60.355 61.111 7.64 0.00 38.90 4.85
3410 4819 2.355009 GCTTGTTGTTGGCGCTGG 60.355 61.111 7.64 0.00 0.00 4.85
3411 4820 1.007038 ATGCTTGTTGTTGGCGCTG 60.007 52.632 7.64 0.00 0.00 5.18
3412 4821 1.007038 CATGCTTGTTGTTGGCGCT 60.007 52.632 7.64 0.00 0.00 5.92
3413 4822 2.660612 GCATGCTTGTTGTTGGCGC 61.661 57.895 11.37 0.00 0.00 6.53
3414 4823 1.300003 TGCATGCTTGTTGTTGGCG 60.300 52.632 20.33 0.00 0.00 5.69
3415 4824 0.530211 TGTGCATGCTTGTTGTTGGC 60.530 50.000 20.33 0.00 0.00 4.52
3416 4825 1.210870 GTGTGCATGCTTGTTGTTGG 58.789 50.000 20.33 0.00 0.00 3.77
3417 4826 1.855978 CTGTGTGCATGCTTGTTGTTG 59.144 47.619 20.33 0.00 0.00 3.33
3418 4827 1.202440 CCTGTGTGCATGCTTGTTGTT 60.202 47.619 20.33 0.00 0.00 2.83
3419 4828 0.386476 CCTGTGTGCATGCTTGTTGT 59.614 50.000 20.33 0.00 0.00 3.32
3420 4829 0.669619 TCCTGTGTGCATGCTTGTTG 59.330 50.000 20.33 6.43 0.00 3.33
3421 4830 0.956633 CTCCTGTGTGCATGCTTGTT 59.043 50.000 20.33 0.00 0.00 2.83
3422 4831 1.521450 GCTCCTGTGTGCATGCTTGT 61.521 55.000 20.33 0.00 0.00 3.16
3423 4832 1.211969 GCTCCTGTGTGCATGCTTG 59.788 57.895 20.33 4.29 0.00 4.01
3424 4833 2.330372 CGCTCCTGTGTGCATGCTT 61.330 57.895 20.33 0.00 0.00 3.91
3425 4834 2.745100 CGCTCCTGTGTGCATGCT 60.745 61.111 20.33 0.00 0.00 3.79
3426 4835 4.471726 GCGCTCCTGTGTGCATGC 62.472 66.667 11.82 11.82 42.40 4.06
3427 4836 2.745100 AGCGCTCCTGTGTGCATG 60.745 61.111 2.64 0.00 44.96 4.06
3428 4837 2.745100 CAGCGCTCCTGTGTGCAT 60.745 61.111 7.13 0.00 44.96 3.96
3436 4845 3.710722 CTCCCCAACAGCGCTCCT 61.711 66.667 7.13 0.00 0.00 3.69
3437 4846 4.785453 CCTCCCCAACAGCGCTCC 62.785 72.222 7.13 0.00 0.00 4.70
3438 4847 2.748058 TTTCCTCCCCAACAGCGCTC 62.748 60.000 7.13 0.00 0.00 5.03
3439 4848 2.351924 TTTTCCTCCCCAACAGCGCT 62.352 55.000 2.64 2.64 0.00 5.92
3440 4849 1.460273 TTTTTCCTCCCCAACAGCGC 61.460 55.000 0.00 0.00 0.00 5.92
3441 4850 1.202348 GATTTTTCCTCCCCAACAGCG 59.798 52.381 0.00 0.00 0.00 5.18
3442 4851 1.202348 CGATTTTTCCTCCCCAACAGC 59.798 52.381 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.