Multiple sequence alignment - TraesCS7B01G409400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G409400 chr7B 100.000 3471 0 0 1 3471 678665112 678661642 0.000000e+00 6410.0
1 TraesCS7B01G409400 chr7B 79.661 1475 231 46 1080 2532 678736597 678735170 0.000000e+00 998.0
2 TraesCS7B01G409400 chr7B 79.184 1470 243 42 1082 2532 678850949 678852374 0.000000e+00 961.0
3 TraesCS7B01G409400 chr7B 83.149 451 65 10 1081 1523 678648028 678647581 5.400000e-108 401.0
4 TraesCS7B01G409400 chr7B 74.510 357 77 11 2562 2908 173991619 173991971 3.610000e-30 143.0
5 TraesCS7B01G409400 chr7D 91.284 1262 57 21 458 1667 599269841 599268581 0.000000e+00 1672.0
6 TraesCS7B01G409400 chr7D 96.512 946 31 1 1644 2589 599255189 599254246 0.000000e+00 1563.0
7 TraesCS7B01G409400 chr7D 81.350 1378 231 22 1081 2444 599193444 599192079 0.000000e+00 1098.0
8 TraesCS7B01G409400 chr7D 80.438 1462 219 41 1080 2522 599398953 599397540 0.000000e+00 1053.0
9 TraesCS7B01G409400 chr7D 96.000 575 21 2 2584 3157 599248923 599248350 0.000000e+00 933.0
10 TraesCS7B01G409400 chr7D 97.444 313 8 0 3159 3471 599248055 599247743 5.100000e-148 534.0
11 TraesCS7B01G409400 chr7D 83.333 84 12 2 647 729 445357609 445357691 3.710000e-10 76.8
12 TraesCS7B01G409400 chr7D 91.111 45 3 1 423 466 551312879 551312923 3.740000e-05 60.2
13 TraesCS7B01G409400 chr7D 91.111 45 1 1 426 467 630834631 630834587 1.350000e-04 58.4
14 TraesCS7B01G409400 chr7A 94.186 860 44 3 458 1315 691474683 691473828 0.000000e+00 1306.0
15 TraesCS7B01G409400 chr7A 97.275 734 19 1 2060 2793 691472873 691472141 0.000000e+00 1243.0
16 TraesCS7B01G409400 chr7A 80.391 1382 237 28 1081 2444 691448268 691446903 0.000000e+00 1020.0
17 TraesCS7B01G409400 chr7A 79.932 1465 231 40 1080 2525 691522598 691521178 0.000000e+00 1018.0
18 TraesCS7B01G409400 chr7A 96.774 558 11 2 1359 1910 691473833 691473277 0.000000e+00 924.0
19 TraesCS7B01G409400 chr7A 78.658 1326 221 40 1068 2373 691675754 691677037 0.000000e+00 824.0
20 TraesCS7B01G409400 chr7A 91.824 318 6 5 3159 3470 691470284 691469981 3.200000e-115 425.0
21 TraesCS7B01G409400 chr7A 94.894 235 9 3 2924 3157 691470793 691470561 7.080000e-97 364.0
22 TraesCS7B01G409400 chr7A 90.741 270 17 3 197 458 78940300 78940031 1.530000e-93 353.0
23 TraesCS7B01G409400 chr7A 89.630 270 20 2 197 458 76350878 76350609 1.540000e-88 337.0
24 TraesCS7B01G409400 chr7A 79.341 455 68 9 22 459 729052980 729052535 2.620000e-76 296.0
25 TraesCS7B01G409400 chr7A 92.093 215 7 3 2777 2981 691471017 691470803 9.420000e-76 294.0
26 TraesCS7B01G409400 chr7A 90.909 66 6 0 659 724 722830471 722830406 4.770000e-14 89.8
27 TraesCS7B01G409400 chr7A 86.111 72 6 4 660 729 616456244 616456175 1.340000e-09 75.0
28 TraesCS7B01G409400 chr4B 77.710 1310 225 27 1147 2444 12840325 12841579 0.000000e+00 739.0
29 TraesCS7B01G409400 chr4B 94.816 463 17 4 1 458 663081247 663081707 0.000000e+00 715.0
30 TraesCS7B01G409400 chr3B 92.697 356 24 2 101 455 757240883 757240529 2.390000e-141 512.0
31 TraesCS7B01G409400 chr3B 88.158 76 8 1 657 731 36381476 36381401 4.770000e-14 89.8
32 TraesCS7B01G409400 chr3B 86.301 73 9 1 648 719 768397820 768397892 1.030000e-10 78.7
33 TraesCS7B01G409400 chr5B 77.309 379 60 17 1103 1468 684166477 684166112 2.110000e-47 200.0
34 TraesCS7B01G409400 chr5B 75.238 420 84 15 1083 1492 684171954 684171545 7.650000e-42 182.0
35 TraesCS7B01G409400 chr4A 76.823 384 70 13 2544 2923 576582719 576582351 7.600000e-47 198.0
36 TraesCS7B01G409400 chr4A 75.766 359 70 14 2562 2909 642673512 642673160 7.710000e-37 165.0
37 TraesCS7B01G409400 chr4A 89.394 66 7 0 659 724 650435548 650435483 2.220000e-12 84.2
38 TraesCS7B01G409400 chr3D 75.373 402 67 13 2545 2941 605071280 605070906 7.710000e-37 165.0
39 TraesCS7B01G409400 chr1A 75.691 362 66 18 2562 2909 548306813 548307166 9.970000e-36 161.0
40 TraesCS7B01G409400 chr4D 74.444 360 72 18 2562 2909 366973101 366973452 1.680000e-28 137.0
41 TraesCS7B01G409400 chr6B 85.714 98 7 4 745 836 703297269 703297365 2.850000e-16 97.1
42 TraesCS7B01G409400 chr5A 85.915 71 8 2 660 729 55869337 55869268 1.340000e-09 75.0
43 TraesCS7B01G409400 chr6D 100.000 34 0 0 426 459 19548350 19548383 2.890000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G409400 chr7B 678661642 678665112 3470 True 6410.000000 6410 100.000000 1 3471 1 chr7B.!!$R2 3470
1 TraesCS7B01G409400 chr7B 678735170 678736597 1427 True 998.000000 998 79.661000 1080 2532 1 chr7B.!!$R3 1452
2 TraesCS7B01G409400 chr7B 678850949 678852374 1425 False 961.000000 961 79.184000 1082 2532 1 chr7B.!!$F2 1450
3 TraesCS7B01G409400 chr7D 599268581 599269841 1260 True 1672.000000 1672 91.284000 458 1667 1 chr7D.!!$R3 1209
4 TraesCS7B01G409400 chr7D 599254246 599255189 943 True 1563.000000 1563 96.512000 1644 2589 1 chr7D.!!$R2 945
5 TraesCS7B01G409400 chr7D 599192079 599193444 1365 True 1098.000000 1098 81.350000 1081 2444 1 chr7D.!!$R1 1363
6 TraesCS7B01G409400 chr7D 599397540 599398953 1413 True 1053.000000 1053 80.438000 1080 2522 1 chr7D.!!$R4 1442
7 TraesCS7B01G409400 chr7D 599247743 599248923 1180 True 733.500000 933 96.722000 2584 3471 2 chr7D.!!$R6 887
8 TraesCS7B01G409400 chr7A 691446903 691448268 1365 True 1020.000000 1020 80.391000 1081 2444 1 chr7A.!!$R4 1363
9 TraesCS7B01G409400 chr7A 691521178 691522598 1420 True 1018.000000 1018 79.932000 1080 2525 1 chr7A.!!$R5 1445
10 TraesCS7B01G409400 chr7A 691675754 691677037 1283 False 824.000000 824 78.658000 1068 2373 1 chr7A.!!$F1 1305
11 TraesCS7B01G409400 chr7A 691469981 691474683 4702 True 759.333333 1306 94.507667 458 3470 6 chr7A.!!$R8 3012
12 TraesCS7B01G409400 chr4B 12840325 12841579 1254 False 739.000000 739 77.710000 1147 2444 1 chr4B.!!$F1 1297

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 456 0.391130 GCAGCACGGGTTGATGACTA 60.391 55.000 5.38 0.0 45.06 2.59 F
696 697 1.285280 AATTCGGTCCCACCAGATGA 58.715 50.000 0.00 0.0 38.47 2.92 F
1271 1330 1.891919 GGCTTCGTGCACCTGAACA 60.892 57.895 12.15 0.0 45.15 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1271 1330 2.980233 GGCGTGCTCAACTGGCTT 60.980 61.111 0.00 0.0 0.00 4.35 R
2178 2507 4.321966 TCACCGTCGGCCAATGCA 62.322 61.111 12.28 0.0 40.13 3.96 R
2919 4397 0.040067 CTTCAGTGCGGTCTTTTGGC 60.040 55.000 0.00 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.552859 TGCTCATTTTTCGATTGTACTTCA 57.447 33.333 0.00 0.00 0.00 3.02
24 25 6.964908 TGCTCATTTTTCGATTGTACTTCAA 58.035 32.000 0.00 0.00 40.53 2.69
26 27 8.081633 TGCTCATTTTTCGATTGTACTTCAATT 58.918 29.630 0.00 0.00 45.49 2.32
27 28 8.578769 GCTCATTTTTCGATTGTACTTCAATTC 58.421 33.333 0.00 0.00 45.49 2.17
28 29 9.831737 CTCATTTTTCGATTGTACTTCAATTCT 57.168 29.630 0.00 0.00 45.49 2.40
31 32 7.851822 TTTTCGATTGTACTTCAATTCTTGC 57.148 32.000 0.00 0.00 45.49 4.01
32 33 5.545658 TCGATTGTACTTCAATTCTTGCC 57.454 39.130 0.00 0.00 45.49 4.52
33 34 5.245531 TCGATTGTACTTCAATTCTTGCCT 58.754 37.500 0.00 0.00 45.49 4.75
34 35 5.122239 TCGATTGTACTTCAATTCTTGCCTG 59.878 40.000 0.00 0.00 45.49 4.85
35 36 4.503741 TTGTACTTCAATTCTTGCCTGC 57.496 40.909 0.00 0.00 0.00 4.85
36 37 3.754965 TGTACTTCAATTCTTGCCTGCT 58.245 40.909 0.00 0.00 0.00 4.24
37 38 3.753272 TGTACTTCAATTCTTGCCTGCTC 59.247 43.478 0.00 0.00 0.00 4.26
38 39 1.808945 ACTTCAATTCTTGCCTGCTCG 59.191 47.619 0.00 0.00 0.00 5.03
39 40 0.523072 TTCAATTCTTGCCTGCTCGC 59.477 50.000 0.00 0.00 0.00 5.03
40 41 0.606130 TCAATTCTTGCCTGCTCGCA 60.606 50.000 0.00 0.00 36.85 5.10
41 42 0.454600 CAATTCTTGCCTGCTCGCAT 59.545 50.000 0.00 0.00 38.87 4.73
42 43 1.135199 CAATTCTTGCCTGCTCGCATT 60.135 47.619 0.00 0.00 38.87 3.56
43 44 0.454600 ATTCTTGCCTGCTCGCATTG 59.545 50.000 0.00 0.00 38.87 2.82
44 45 0.606130 TTCTTGCCTGCTCGCATTGA 60.606 50.000 0.00 0.00 38.87 2.57
45 46 0.393402 TCTTGCCTGCTCGCATTGAT 60.393 50.000 0.00 0.00 38.87 2.57
46 47 1.134431 TCTTGCCTGCTCGCATTGATA 60.134 47.619 0.00 0.00 38.87 2.15
47 48 1.672363 CTTGCCTGCTCGCATTGATAA 59.328 47.619 0.00 0.00 38.87 1.75
48 49 1.748950 TGCCTGCTCGCATTGATAAA 58.251 45.000 0.00 0.00 32.62 1.40
49 50 2.090760 TGCCTGCTCGCATTGATAAAA 58.909 42.857 0.00 0.00 32.62 1.52
50 51 2.491298 TGCCTGCTCGCATTGATAAAAA 59.509 40.909 0.00 0.00 32.62 1.94
51 52 3.130869 TGCCTGCTCGCATTGATAAAAAT 59.869 39.130 0.00 0.00 32.62 1.82
52 53 3.488310 GCCTGCTCGCATTGATAAAAATG 59.512 43.478 0.00 0.00 39.98 2.32
68 69 9.651913 TGATAAAAATGCTTAAAACTCCAATCC 57.348 29.630 0.00 0.00 0.00 3.01
69 70 9.651913 GATAAAAATGCTTAAAACTCCAATCCA 57.348 29.630 0.00 0.00 0.00 3.41
71 72 7.910441 AAAATGCTTAAAACTCCAATCCATG 57.090 32.000 0.00 0.00 0.00 3.66
72 73 6.610075 AATGCTTAAAACTCCAATCCATGT 57.390 33.333 0.00 0.00 0.00 3.21
73 74 5.389859 TGCTTAAAACTCCAATCCATGTG 57.610 39.130 0.00 0.00 0.00 3.21
74 75 5.076182 TGCTTAAAACTCCAATCCATGTGA 58.924 37.500 0.00 0.00 0.00 3.58
75 76 5.538053 TGCTTAAAACTCCAATCCATGTGAA 59.462 36.000 0.00 0.00 0.00 3.18
76 77 6.211184 TGCTTAAAACTCCAATCCATGTGAAT 59.789 34.615 0.00 0.00 0.00 2.57
77 78 6.532657 GCTTAAAACTCCAATCCATGTGAATG 59.467 38.462 0.00 0.00 0.00 2.67
78 79 7.537596 TTAAAACTCCAATCCATGTGAATGT 57.462 32.000 0.00 0.00 0.00 2.71
79 80 8.642935 TTAAAACTCCAATCCATGTGAATGTA 57.357 30.769 0.00 0.00 0.00 2.29
80 81 7.722949 AAAACTCCAATCCATGTGAATGTAT 57.277 32.000 0.00 0.00 0.00 2.29
81 82 7.722949 AAACTCCAATCCATGTGAATGTATT 57.277 32.000 0.00 0.00 0.00 1.89
82 83 8.821686 AAACTCCAATCCATGTGAATGTATTA 57.178 30.769 0.00 0.00 0.00 0.98
83 84 9.425248 AAACTCCAATCCATGTGAATGTATTAT 57.575 29.630 0.00 0.00 0.00 1.28
84 85 8.400184 ACTCCAATCCATGTGAATGTATTATG 57.600 34.615 0.00 0.00 0.00 1.90
85 86 7.040201 ACTCCAATCCATGTGAATGTATTATGC 60.040 37.037 0.00 0.00 0.00 3.14
86 87 6.776603 TCCAATCCATGTGAATGTATTATGCA 59.223 34.615 0.00 0.00 0.00 3.96
87 88 7.452189 TCCAATCCATGTGAATGTATTATGCAT 59.548 33.333 3.79 3.79 0.00 3.96
88 89 7.544217 CCAATCCATGTGAATGTATTATGCATG 59.456 37.037 10.16 0.00 33.98 4.06
89 90 6.016213 TCCATGTGAATGTATTATGCATGC 57.984 37.500 11.82 11.82 33.16 4.06
90 91 5.535406 TCCATGTGAATGTATTATGCATGCA 59.465 36.000 25.04 25.04 33.16 3.96
91 92 6.209788 TCCATGTGAATGTATTATGCATGCAT 59.790 34.615 33.92 33.92 39.74 3.96
92 93 6.310224 CCATGTGAATGTATTATGCATGCATG 59.690 38.462 37.43 22.70 38.17 4.06
93 94 5.774630 TGTGAATGTATTATGCATGCATGG 58.225 37.500 37.43 10.03 38.17 3.66
94 95 5.165676 GTGAATGTATTATGCATGCATGGG 58.834 41.667 37.43 4.09 38.17 4.00
95 96 4.833938 TGAATGTATTATGCATGCATGGGT 59.166 37.500 37.43 25.37 38.17 4.51
96 97 5.304871 TGAATGTATTATGCATGCATGGGTT 59.695 36.000 37.43 23.27 38.17 4.11
97 98 6.492772 TGAATGTATTATGCATGCATGGGTTA 59.507 34.615 37.43 22.72 38.17 2.85
98 99 5.703978 TGTATTATGCATGCATGGGTTAC 57.296 39.130 37.43 28.84 37.82 2.50
99 100 4.522405 TGTATTATGCATGCATGGGTTACC 59.478 41.667 37.43 20.28 37.82 2.85
100 101 3.311167 TTATGCATGCATGGGTTACCT 57.689 42.857 37.43 15.82 37.82 3.08
101 102 2.163810 ATGCATGCATGGGTTACCTT 57.836 45.000 31.74 4.69 37.76 3.50
102 103 1.935799 TGCATGCATGGGTTACCTTT 58.064 45.000 27.34 0.00 37.76 3.11
103 104 1.549620 TGCATGCATGGGTTACCTTTG 59.450 47.619 27.34 0.00 37.76 2.77
104 105 1.550072 GCATGCATGGGTTACCTTTGT 59.450 47.619 27.34 0.00 37.76 2.83
105 106 2.757868 GCATGCATGGGTTACCTTTGTA 59.242 45.455 27.34 0.00 37.76 2.41
106 107 3.181487 GCATGCATGGGTTACCTTTGTAG 60.181 47.826 27.34 0.00 37.76 2.74
107 108 2.442413 TGCATGGGTTACCTTTGTAGC 58.558 47.619 0.00 0.00 37.76 3.58
108 109 2.041081 TGCATGGGTTACCTTTGTAGCT 59.959 45.455 0.00 0.00 37.76 3.32
109 110 3.264706 TGCATGGGTTACCTTTGTAGCTA 59.735 43.478 0.00 0.00 37.76 3.32
110 111 3.877508 GCATGGGTTACCTTTGTAGCTAG 59.122 47.826 0.00 0.00 37.76 3.42
111 112 4.383770 GCATGGGTTACCTTTGTAGCTAGA 60.384 45.833 0.00 0.00 37.76 2.43
112 113 5.741011 CATGGGTTACCTTTGTAGCTAGAA 58.259 41.667 0.00 0.00 37.76 2.10
113 114 5.156608 TGGGTTACCTTTGTAGCTAGAAC 57.843 43.478 2.20 0.00 37.76 3.01
114 115 4.842380 TGGGTTACCTTTGTAGCTAGAACT 59.158 41.667 2.20 0.00 37.76 3.01
115 116 5.308759 TGGGTTACCTTTGTAGCTAGAACTT 59.691 40.000 2.20 0.00 37.76 2.66
116 117 6.183361 TGGGTTACCTTTGTAGCTAGAACTTT 60.183 38.462 2.20 0.00 37.76 2.66
117 118 6.370994 GGGTTACCTTTGTAGCTAGAACTTTC 59.629 42.308 2.20 0.00 0.00 2.62
118 119 7.160049 GGTTACCTTTGTAGCTAGAACTTTCT 58.840 38.462 2.20 0.00 41.24 2.52
119 120 7.331440 GGTTACCTTTGTAGCTAGAACTTTCTC 59.669 40.741 2.20 0.00 38.70 2.87
120 121 6.420913 ACCTTTGTAGCTAGAACTTTCTCA 57.579 37.500 2.20 0.00 38.70 3.27
121 122 7.010339 ACCTTTGTAGCTAGAACTTTCTCAT 57.990 36.000 2.20 0.00 38.70 2.90
122 123 6.876257 ACCTTTGTAGCTAGAACTTTCTCATG 59.124 38.462 2.20 0.00 38.70 3.07
123 124 6.314896 CCTTTGTAGCTAGAACTTTCTCATGG 59.685 42.308 2.20 0.00 38.70 3.66
124 125 6.605471 TTGTAGCTAGAACTTTCTCATGGA 57.395 37.500 0.00 0.00 38.70 3.41
125 126 6.605471 TGTAGCTAGAACTTTCTCATGGAA 57.395 37.500 0.00 0.00 38.70 3.53
126 127 6.398918 TGTAGCTAGAACTTTCTCATGGAAC 58.601 40.000 0.00 0.00 38.70 3.62
127 128 4.837972 AGCTAGAACTTTCTCATGGAACC 58.162 43.478 0.00 0.00 38.70 3.62
128 129 3.619038 GCTAGAACTTTCTCATGGAACCG 59.381 47.826 0.00 0.00 38.70 4.44
129 130 4.620803 GCTAGAACTTTCTCATGGAACCGA 60.621 45.833 0.00 0.00 38.70 4.69
130 131 4.559862 AGAACTTTCTCATGGAACCGAT 57.440 40.909 0.00 0.00 33.13 4.18
131 132 5.677319 AGAACTTTCTCATGGAACCGATA 57.323 39.130 0.00 0.00 33.13 2.92
132 133 6.049955 AGAACTTTCTCATGGAACCGATAA 57.950 37.500 0.00 0.00 33.13 1.75
133 134 6.109359 AGAACTTTCTCATGGAACCGATAAG 58.891 40.000 0.00 0.00 33.13 1.73
134 135 5.677319 ACTTTCTCATGGAACCGATAAGA 57.323 39.130 0.00 0.00 33.13 2.10
135 136 6.049955 ACTTTCTCATGGAACCGATAAGAA 57.950 37.500 0.00 0.00 33.13 2.52
136 137 6.109359 ACTTTCTCATGGAACCGATAAGAAG 58.891 40.000 0.00 0.00 33.13 2.85
137 138 5.932619 TTCTCATGGAACCGATAAGAAGA 57.067 39.130 0.00 0.00 0.00 2.87
138 139 5.521906 TCTCATGGAACCGATAAGAAGAG 57.478 43.478 0.00 0.00 0.00 2.85
139 140 5.201243 TCTCATGGAACCGATAAGAAGAGA 58.799 41.667 0.00 0.00 0.00 3.10
140 141 5.835819 TCTCATGGAACCGATAAGAAGAGAT 59.164 40.000 0.00 0.00 0.00 2.75
141 142 7.004691 TCTCATGGAACCGATAAGAAGAGATA 58.995 38.462 0.00 0.00 0.00 1.98
142 143 6.982852 TCATGGAACCGATAAGAAGAGATAC 58.017 40.000 0.00 0.00 0.00 2.24
143 144 5.434352 TGGAACCGATAAGAAGAGATACG 57.566 43.478 0.00 0.00 0.00 3.06
144 145 5.128205 TGGAACCGATAAGAAGAGATACGA 58.872 41.667 0.00 0.00 0.00 3.43
145 146 5.238868 TGGAACCGATAAGAAGAGATACGAG 59.761 44.000 0.00 0.00 0.00 4.18
146 147 5.335035 GGAACCGATAAGAAGAGATACGAGG 60.335 48.000 0.00 0.00 0.00 4.63
147 148 4.716794 ACCGATAAGAAGAGATACGAGGT 58.283 43.478 0.00 0.00 0.00 3.85
148 149 5.131784 ACCGATAAGAAGAGATACGAGGTT 58.868 41.667 0.00 0.00 0.00 3.50
149 150 5.008811 ACCGATAAGAAGAGATACGAGGTTG 59.991 44.000 0.00 0.00 0.00 3.77
150 151 4.912766 CGATAAGAAGAGATACGAGGTTGC 59.087 45.833 0.00 0.00 0.00 4.17
151 152 5.278071 CGATAAGAAGAGATACGAGGTTGCT 60.278 44.000 0.00 0.00 0.00 3.91
152 153 4.810191 AAGAAGAGATACGAGGTTGCTT 57.190 40.909 0.00 0.00 0.00 3.91
153 154 5.916661 AAGAAGAGATACGAGGTTGCTTA 57.083 39.130 0.00 0.00 0.00 3.09
154 155 5.916661 AGAAGAGATACGAGGTTGCTTAA 57.083 39.130 0.00 0.00 0.00 1.85
155 156 5.652518 AGAAGAGATACGAGGTTGCTTAAC 58.347 41.667 0.00 0.00 0.00 2.01
156 157 5.185249 AGAAGAGATACGAGGTTGCTTAACA 59.815 40.000 0.00 0.00 0.00 2.41
157 158 4.745649 AGAGATACGAGGTTGCTTAACAC 58.254 43.478 0.00 0.00 0.00 3.32
158 159 3.508762 AGATACGAGGTTGCTTAACACG 58.491 45.455 0.00 0.00 0.00 4.49
159 160 3.192001 AGATACGAGGTTGCTTAACACGA 59.808 43.478 12.82 2.29 0.00 4.35
160 161 2.450609 ACGAGGTTGCTTAACACGAT 57.549 45.000 12.82 0.00 0.00 3.73
161 162 2.334838 ACGAGGTTGCTTAACACGATC 58.665 47.619 12.82 0.00 0.00 3.69
162 163 2.029290 ACGAGGTTGCTTAACACGATCT 60.029 45.455 12.82 0.00 0.00 2.75
163 164 3.192001 ACGAGGTTGCTTAACACGATCTA 59.808 43.478 12.82 0.00 0.00 1.98
164 165 4.142227 ACGAGGTTGCTTAACACGATCTAT 60.142 41.667 12.82 0.00 0.00 1.98
165 166 4.441415 CGAGGTTGCTTAACACGATCTATC 59.559 45.833 0.00 0.00 0.00 2.08
166 167 5.339008 AGGTTGCTTAACACGATCTATCA 57.661 39.130 0.00 0.00 0.00 2.15
167 168 5.918608 AGGTTGCTTAACACGATCTATCAT 58.081 37.500 0.00 0.00 0.00 2.45
168 169 6.349300 AGGTTGCTTAACACGATCTATCATT 58.651 36.000 0.00 0.00 0.00 2.57
169 170 6.823689 AGGTTGCTTAACACGATCTATCATTT 59.176 34.615 0.00 0.00 0.00 2.32
170 171 7.985184 AGGTTGCTTAACACGATCTATCATTTA 59.015 33.333 0.00 0.00 0.00 1.40
171 172 8.276325 GGTTGCTTAACACGATCTATCATTTAG 58.724 37.037 0.00 0.00 0.00 1.85
172 173 9.031360 GTTGCTTAACACGATCTATCATTTAGA 57.969 33.333 0.00 0.00 0.00 2.10
173 174 9.594478 TTGCTTAACACGATCTATCATTTAGAA 57.406 29.630 0.00 0.00 0.00 2.10
174 175 9.249457 TGCTTAACACGATCTATCATTTAGAAG 57.751 33.333 0.00 0.00 0.00 2.85
175 176 9.250624 GCTTAACACGATCTATCATTTAGAAGT 57.749 33.333 0.00 0.00 0.00 3.01
178 179 7.470289 ACACGATCTATCATTTAGAAGTTGC 57.530 36.000 0.00 0.00 0.00 4.17
179 180 7.268586 ACACGATCTATCATTTAGAAGTTGCT 58.731 34.615 0.00 0.00 0.00 3.91
180 181 7.766278 ACACGATCTATCATTTAGAAGTTGCTT 59.234 33.333 0.00 0.00 0.00 3.91
181 182 8.607459 CACGATCTATCATTTAGAAGTTGCTTT 58.393 33.333 0.00 0.00 0.00 3.51
182 183 9.817809 ACGATCTATCATTTAGAAGTTGCTTTA 57.182 29.630 0.00 0.00 0.00 1.85
185 186 9.844257 ATCTATCATTTAGAAGTTGCTTTAGCT 57.156 29.630 3.10 0.00 42.66 3.32
189 190 8.792830 TCATTTAGAAGTTGCTTTAGCTATGT 57.207 30.769 3.10 0.00 42.66 2.29
190 191 8.668353 TCATTTAGAAGTTGCTTTAGCTATGTG 58.332 33.333 3.10 0.00 42.66 3.21
191 192 7.979444 TTTAGAAGTTGCTTTAGCTATGTGT 57.021 32.000 3.10 0.00 42.66 3.72
192 193 7.979444 TTAGAAGTTGCTTTAGCTATGTGTT 57.021 32.000 3.10 0.00 42.66 3.32
193 194 9.496873 TTTAGAAGTTGCTTTAGCTATGTGTTA 57.503 29.630 3.10 0.00 42.66 2.41
194 195 7.979444 AGAAGTTGCTTTAGCTATGTGTTAA 57.021 32.000 3.10 0.00 42.66 2.01
195 196 8.391075 AGAAGTTGCTTTAGCTATGTGTTAAA 57.609 30.769 3.10 0.00 42.66 1.52
196 197 8.846211 AGAAGTTGCTTTAGCTATGTGTTAAAA 58.154 29.630 3.10 0.00 42.66 1.52
197 198 9.458374 GAAGTTGCTTTAGCTATGTGTTAAAAA 57.542 29.630 3.10 0.00 42.66 1.94
229 230 9.836864 TTTCTAGATTACATATCACAAGCATGT 57.163 29.630 0.00 0.00 41.61 3.21
230 231 9.481340 TTCTAGATTACATATCACAAGCATGTC 57.519 33.333 0.00 0.00 37.82 3.06
231 232 8.641541 TCTAGATTACATATCACAAGCATGTCA 58.358 33.333 0.00 0.00 37.82 3.58
232 233 9.264719 CTAGATTACATATCACAAGCATGTCAA 57.735 33.333 0.00 0.00 37.82 3.18
233 234 8.687292 AGATTACATATCACAAGCATGTCAAT 57.313 30.769 0.00 0.00 37.82 2.57
234 235 9.783081 AGATTACATATCACAAGCATGTCAATA 57.217 29.630 0.00 0.00 37.82 1.90
236 237 8.962884 TTACATATCACAAGCATGTCAATAGT 57.037 30.769 0.00 0.00 37.82 2.12
238 239 8.962884 ACATATCACAAGCATGTCAATAGTAA 57.037 30.769 0.00 0.00 37.82 2.24
239 240 9.565090 ACATATCACAAGCATGTCAATAGTAAT 57.435 29.630 0.00 0.00 37.82 1.89
241 242 9.783081 ATATCACAAGCATGTCAATAGTAATCA 57.217 29.630 0.00 0.00 37.82 2.57
242 243 7.920160 TCACAAGCATGTCAATAGTAATCAA 57.080 32.000 0.00 0.00 37.82 2.57
243 244 7.751732 TCACAAGCATGTCAATAGTAATCAAC 58.248 34.615 0.00 0.00 37.82 3.18
244 245 6.968904 CACAAGCATGTCAATAGTAATCAACC 59.031 38.462 0.00 0.00 37.82 3.77
245 246 6.095440 ACAAGCATGTCAATAGTAATCAACCC 59.905 38.462 0.00 0.00 33.41 4.11
246 247 6.006275 AGCATGTCAATAGTAATCAACCCT 57.994 37.500 0.00 0.00 0.00 4.34
247 248 6.058183 AGCATGTCAATAGTAATCAACCCTC 58.942 40.000 0.00 0.00 0.00 4.30
248 249 6.058183 GCATGTCAATAGTAATCAACCCTCT 58.942 40.000 0.00 0.00 0.00 3.69
249 250 6.543831 GCATGTCAATAGTAATCAACCCTCTT 59.456 38.462 0.00 0.00 0.00 2.85
250 251 7.715249 GCATGTCAATAGTAATCAACCCTCTTA 59.285 37.037 0.00 0.00 0.00 2.10
251 252 9.784531 CATGTCAATAGTAATCAACCCTCTTAT 57.215 33.333 0.00 0.00 0.00 1.73
253 254 9.213777 TGTCAATAGTAATCAACCCTCTTATCT 57.786 33.333 0.00 0.00 0.00 1.98
259 260 8.625467 AGTAATCAACCCTCTTATCTAAACCT 57.375 34.615 0.00 0.00 0.00 3.50
260 261 9.725206 AGTAATCAACCCTCTTATCTAAACCTA 57.275 33.333 0.00 0.00 0.00 3.08
263 264 8.625467 ATCAACCCTCTTATCTAAACCTAACT 57.375 34.615 0.00 0.00 0.00 2.24
264 265 8.445361 TCAACCCTCTTATCTAAACCTAACTT 57.555 34.615 0.00 0.00 0.00 2.66
265 266 9.551339 TCAACCCTCTTATCTAAACCTAACTTA 57.449 33.333 0.00 0.00 0.00 2.24
268 269 9.779951 ACCCTCTTATCTAAACCTAACTTAAGA 57.220 33.333 10.09 0.00 0.00 2.10
280 281 8.754230 AACCTAACTTAAGAACATCTTACGAC 57.246 34.615 10.09 0.00 38.56 4.34
281 282 7.025963 ACCTAACTTAAGAACATCTTACGACG 58.974 38.462 10.09 0.00 38.56 5.12
282 283 7.094634 ACCTAACTTAAGAACATCTTACGACGA 60.095 37.037 10.09 0.00 38.56 4.20
283 284 7.914346 CCTAACTTAAGAACATCTTACGACGAT 59.086 37.037 10.09 0.00 38.56 3.73
284 285 7.737525 AACTTAAGAACATCTTACGACGATC 57.262 36.000 10.09 0.00 38.56 3.69
285 286 5.964168 ACTTAAGAACATCTTACGACGATCG 59.036 40.000 14.88 14.88 38.56 3.69
286 287 4.611310 AAGAACATCTTACGACGATCGA 57.389 40.909 24.34 0.00 43.97 3.59
287 288 4.198473 AGAACATCTTACGACGATCGAG 57.802 45.455 24.34 17.22 43.74 4.04
288 289 3.869832 AGAACATCTTACGACGATCGAGA 59.130 43.478 24.34 14.05 43.74 4.04
289 290 3.863396 ACATCTTACGACGATCGAGAG 57.137 47.619 24.34 14.29 43.74 3.20
290 291 3.455327 ACATCTTACGACGATCGAGAGA 58.545 45.455 24.34 15.85 43.74 3.10
291 292 9.002592 AAGAACATCTTACGACGATCGAGAGAA 62.003 40.741 24.34 12.90 43.97 2.87
306 307 6.769134 TCGAGAGAAAACTATACATGGTGA 57.231 37.500 0.00 0.00 37.03 4.02
307 308 7.348080 TCGAGAGAAAACTATACATGGTGAT 57.652 36.000 0.00 0.00 37.03 3.06
308 309 7.203218 TCGAGAGAAAACTATACATGGTGATG 58.797 38.462 0.00 0.00 37.03 3.07
309 310 6.074088 CGAGAGAAAACTATACATGGTGATGC 60.074 42.308 0.00 0.00 32.14 3.91
310 311 6.653020 AGAGAAAACTATACATGGTGATGCA 58.347 36.000 0.00 0.00 32.14 3.96
311 312 6.540189 AGAGAAAACTATACATGGTGATGCAC 59.460 38.462 0.00 0.00 32.14 4.57
312 313 6.179756 AGAAAACTATACATGGTGATGCACA 58.820 36.000 0.00 0.00 35.86 4.57
313 314 6.658816 AGAAAACTATACATGGTGATGCACAA 59.341 34.615 0.00 0.00 35.86 3.33
314 315 7.340232 AGAAAACTATACATGGTGATGCACAAT 59.660 33.333 0.00 0.00 35.86 2.71
315 316 7.408756 AAACTATACATGGTGATGCACAATT 57.591 32.000 0.00 0.00 35.86 2.32
316 317 8.518430 AAACTATACATGGTGATGCACAATTA 57.482 30.769 0.00 0.00 35.86 1.40
317 318 8.696043 AACTATACATGGTGATGCACAATTAT 57.304 30.769 0.00 0.00 35.86 1.28
318 319 8.327941 ACTATACATGGTGATGCACAATTATC 57.672 34.615 0.00 0.00 35.86 1.75
319 320 8.159447 ACTATACATGGTGATGCACAATTATCT 58.841 33.333 0.00 0.00 35.86 1.98
320 321 7.828508 ATACATGGTGATGCACAATTATCTT 57.171 32.000 0.00 0.00 35.86 2.40
321 322 6.534475 ACATGGTGATGCACAATTATCTTT 57.466 33.333 0.00 0.00 35.86 2.52
322 323 6.567050 ACATGGTGATGCACAATTATCTTTC 58.433 36.000 0.00 0.00 35.86 2.62
323 324 5.581126 TGGTGATGCACAATTATCTTTCC 57.419 39.130 0.00 0.00 35.86 3.13
324 325 5.015515 TGGTGATGCACAATTATCTTTCCA 58.984 37.500 0.00 0.00 35.86 3.53
325 326 5.479724 TGGTGATGCACAATTATCTTTCCAA 59.520 36.000 0.00 0.00 35.86 3.53
326 327 6.014755 TGGTGATGCACAATTATCTTTCCAAA 60.015 34.615 0.00 0.00 35.86 3.28
327 328 6.311200 GGTGATGCACAATTATCTTTCCAAAC 59.689 38.462 0.00 0.00 35.86 2.93
328 329 6.867816 GTGATGCACAATTATCTTTCCAAACA 59.132 34.615 0.00 0.00 34.08 2.83
329 330 7.384660 GTGATGCACAATTATCTTTCCAAACAA 59.615 33.333 0.00 0.00 34.08 2.83
330 331 7.930325 TGATGCACAATTATCTTTCCAAACAAA 59.070 29.630 0.00 0.00 0.00 2.83
331 332 8.851541 ATGCACAATTATCTTTCCAAACAAAT 57.148 26.923 0.00 0.00 0.00 2.32
332 333 8.309163 TGCACAATTATCTTTCCAAACAAATC 57.691 30.769 0.00 0.00 0.00 2.17
333 334 7.930325 TGCACAATTATCTTTCCAAACAAATCA 59.070 29.630 0.00 0.00 0.00 2.57
334 335 8.938906 GCACAATTATCTTTCCAAACAAATCAT 58.061 29.630 0.00 0.00 0.00 2.45
341 342 7.903995 TCTTTCCAAACAAATCATATTTGCC 57.096 32.000 11.32 0.00 32.98 4.52
342 343 6.589523 TCTTTCCAAACAAATCATATTTGCCG 59.410 34.615 11.32 2.13 32.98 5.69
343 344 5.651387 TCCAAACAAATCATATTTGCCGA 57.349 34.783 11.32 1.40 32.98 5.54
344 345 5.406649 TCCAAACAAATCATATTTGCCGAC 58.593 37.500 11.32 0.00 32.98 4.79
345 346 5.047731 TCCAAACAAATCATATTTGCCGACA 60.048 36.000 11.32 0.00 32.98 4.35
346 347 5.811613 CCAAACAAATCATATTTGCCGACAT 59.188 36.000 11.32 0.00 32.98 3.06
347 348 6.313411 CCAAACAAATCATATTTGCCGACATT 59.687 34.615 11.32 0.00 32.98 2.71
348 349 7.393327 CAAACAAATCATATTTGCCGACATTC 58.607 34.615 11.32 0.00 32.93 2.67
349 350 6.206395 ACAAATCATATTTGCCGACATTCA 57.794 33.333 11.32 0.00 32.93 2.57
350 351 6.629128 ACAAATCATATTTGCCGACATTCAA 58.371 32.000 11.32 0.00 32.93 2.69
351 352 7.095910 ACAAATCATATTTGCCGACATTCAAA 58.904 30.769 11.32 0.00 36.72 2.69
352 353 7.765360 ACAAATCATATTTGCCGACATTCAAAT 59.235 29.630 11.32 5.66 43.11 2.32
353 354 9.247126 CAAATCATATTTGCCGACATTCAAATA 57.753 29.630 9.07 9.07 44.36 1.40
354 355 9.814899 AAATCATATTTGCCGACATTCAAATAA 57.185 25.926 10.27 0.00 43.83 1.40
355 356 9.985730 AATCATATTTGCCGACATTCAAATAAT 57.014 25.926 10.27 0.91 43.83 1.28
361 362 9.912634 ATTTGCCGACATTCAAATAATAATAGG 57.087 29.630 0.00 0.00 40.07 2.57
362 363 8.684386 TTGCCGACATTCAAATAATAATAGGA 57.316 30.769 0.00 0.00 0.00 2.94
363 364 8.862325 TGCCGACATTCAAATAATAATAGGAT 57.138 30.769 0.00 0.00 0.00 3.24
364 365 9.295825 TGCCGACATTCAAATAATAATAGGATT 57.704 29.630 0.00 0.00 0.00 3.01
365 366 9.774742 GCCGACATTCAAATAATAATAGGATTC 57.225 33.333 0.00 0.00 0.00 2.52
382 383 9.699410 AATAGGATTCATTGACAAAAGGTATCA 57.301 29.630 0.00 0.00 0.00 2.15
383 384 9.872684 ATAGGATTCATTGACAAAAGGTATCAT 57.127 29.630 0.00 0.00 0.00 2.45
385 386 9.872684 AGGATTCATTGACAAAAGGTATCATAT 57.127 29.630 0.00 0.00 0.00 1.78
390 391 8.623903 TCATTGACAAAAGGTATCATATCAAGC 58.376 33.333 0.00 0.00 0.00 4.01
391 392 6.942532 TGACAAAAGGTATCATATCAAGCC 57.057 37.500 0.00 0.00 0.00 4.35
392 393 6.662755 TGACAAAAGGTATCATATCAAGCCT 58.337 36.000 0.00 0.00 0.00 4.58
393 394 7.801104 TGACAAAAGGTATCATATCAAGCCTA 58.199 34.615 0.00 0.00 0.00 3.93
394 395 7.715249 TGACAAAAGGTATCATATCAAGCCTAC 59.285 37.037 0.00 0.00 0.00 3.18
395 396 7.573710 ACAAAAGGTATCATATCAAGCCTACA 58.426 34.615 0.00 0.00 0.00 2.74
396 397 8.052748 ACAAAAGGTATCATATCAAGCCTACAA 58.947 33.333 0.00 0.00 0.00 2.41
397 398 9.071276 CAAAAGGTATCATATCAAGCCTACAAT 57.929 33.333 0.00 0.00 0.00 2.71
434 435 9.762933 TTTCTTTCAATATTTAATAGCCCATGC 57.237 29.630 0.00 0.00 37.95 4.06
435 436 8.476064 TCTTTCAATATTTAATAGCCCATGCA 57.524 30.769 0.00 0.00 41.13 3.96
436 437 8.579006 TCTTTCAATATTTAATAGCCCATGCAG 58.421 33.333 0.00 0.00 41.13 4.41
437 438 6.271488 TCAATATTTAATAGCCCATGCAGC 57.729 37.500 0.00 0.00 41.13 5.25
438 439 5.774184 TCAATATTTAATAGCCCATGCAGCA 59.226 36.000 0.00 0.00 41.13 4.41
439 440 5.909621 ATATTTAATAGCCCATGCAGCAG 57.090 39.130 0.00 0.00 41.13 4.24
440 441 1.321474 TTAATAGCCCATGCAGCAGC 58.679 50.000 0.00 0.00 41.13 5.25
450 451 3.058160 GCAGCAGCACGGGTTGAT 61.058 61.111 5.38 0.00 41.58 2.57
451 452 2.872557 CAGCAGCACGGGTTGATG 59.127 61.111 5.11 5.11 45.03 3.07
452 453 1.672030 CAGCAGCACGGGTTGATGA 60.672 57.895 15.12 0.00 45.06 2.92
453 454 1.672356 AGCAGCACGGGTTGATGAC 60.672 57.895 5.38 0.00 45.06 3.06
454 455 1.672356 GCAGCACGGGTTGATGACT 60.672 57.895 5.38 0.00 45.06 3.41
455 456 0.391130 GCAGCACGGGTTGATGACTA 60.391 55.000 5.38 0.00 45.06 2.59
456 457 1.645034 CAGCACGGGTTGATGACTAG 58.355 55.000 0.00 0.00 45.06 2.57
520 521 2.698797 CCTCGTATACATGGAGGGTTGT 59.301 50.000 14.40 0.00 42.91 3.32
535 536 4.256110 AGGGTTGTAAGGTATACGCAAAC 58.744 43.478 0.00 2.79 0.00 2.93
541 542 2.883122 AGGTATACGCAAACCCCAAA 57.117 45.000 0.00 0.00 36.34 3.28
570 571 7.201635 GGGATTTTGGATTCACAATAAATGCAC 60.202 37.037 0.00 0.00 34.69 4.57
574 575 6.198650 TGGATTCACAATAAATGCACTCAG 57.801 37.500 0.00 0.00 30.68 3.35
653 654 3.568443 ACGGAATTACAACCAAGGGTTT 58.432 40.909 0.00 0.00 44.33 3.27
657 658 5.279256 CGGAATTACAACCAAGGGTTTCATT 60.279 40.000 0.00 0.00 44.33 2.57
679 680 8.208224 TCATTGGTTGATCTACACCGTAATAAT 58.792 33.333 9.51 0.00 0.00 1.28
696 697 1.285280 AATTCGGTCCCACCAGATGA 58.715 50.000 0.00 0.00 38.47 2.92
703 704 2.420687 GGTCCCACCAGATGAACATCTC 60.421 54.545 13.47 2.51 45.78 2.75
762 763 9.862371 CATATCTAAAGCATAATAACTCGGTCT 57.138 33.333 0.00 0.00 0.00 3.85
1160 1218 2.477845 CTACCGTCGTCGTCGCTT 59.522 61.111 6.36 0.00 36.96 4.68
1271 1330 1.891919 GGCTTCGTGCACCTGAACA 60.892 57.895 12.15 0.00 45.15 3.18
1492 1555 4.444838 TCGCCGTCATTCCACCCG 62.445 66.667 0.00 0.00 0.00 5.28
1805 1877 2.741145 TCTCCTACTGCCTCTTCTTCC 58.259 52.381 0.00 0.00 0.00 3.46
2178 2507 2.746277 GACCCGCGCCATCTTGTT 60.746 61.111 0.00 0.00 0.00 2.83
2182 2511 2.486504 CGCGCCATCTTGTTGCAT 59.513 55.556 0.00 0.00 0.00 3.96
2677 3006 7.690228 TGTGCAGAATTTCATAACGTTATACC 58.310 34.615 19.95 6.58 0.00 2.73
2919 4397 1.523258 CCTCCCTGATGCTTGAGCG 60.523 63.158 0.00 0.00 45.83 5.03
3130 4678 2.952310 GAGGAATGGGTCTTACCAATGC 59.048 50.000 0.00 0.00 45.13 3.56
3157 4705 4.823989 GGATTTCAATATGACACTCCTGGG 59.176 45.833 0.00 0.00 0.00 4.45
3314 5169 1.758936 CATCTGAGCTGCCATTTCCA 58.241 50.000 0.00 0.00 0.00 3.53
3399 5254 2.614481 GCCCAAGACCAATACGAAGTCA 60.614 50.000 0.00 0.00 43.93 3.41
3422 5283 2.419739 GGGAGAGGAGAGGACGCAC 61.420 68.421 0.00 0.00 0.00 5.34
3423 5284 2.766400 GGAGAGGAGAGGACGCACG 61.766 68.421 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.552859 TGAAGTACAATCGAAAAATGAGCA 57.447 33.333 0.00 0.00 0.00 4.26
1 2 8.452989 AATTGAAGTACAATCGAAAAATGAGC 57.547 30.769 0.00 0.00 46.90 4.26
2 3 9.831737 AGAATTGAAGTACAATCGAAAAATGAG 57.168 29.630 0.00 0.00 46.90 2.90
23 24 4.402851 TGCGAGCAGGCAAGAATT 57.597 50.000 0.00 0.00 40.59 2.17
30 31 2.849880 TTTTATCAATGCGAGCAGGC 57.150 45.000 3.58 0.00 0.00 4.85
42 43 9.651913 GGATTGGAGTTTTAAGCATTTTTATCA 57.348 29.630 0.00 0.00 0.00 2.15
43 44 9.651913 TGGATTGGAGTTTTAAGCATTTTTATC 57.348 29.630 0.00 0.00 0.00 1.75
45 46 9.434420 CATGGATTGGAGTTTTAAGCATTTTTA 57.566 29.630 0.00 0.00 0.00 1.52
46 47 7.938490 ACATGGATTGGAGTTTTAAGCATTTTT 59.062 29.630 0.00 0.00 0.00 1.94
47 48 7.388500 CACATGGATTGGAGTTTTAAGCATTTT 59.612 33.333 0.00 0.00 0.00 1.82
48 49 6.875195 CACATGGATTGGAGTTTTAAGCATTT 59.125 34.615 0.00 0.00 0.00 2.32
49 50 6.211184 TCACATGGATTGGAGTTTTAAGCATT 59.789 34.615 0.00 0.00 0.00 3.56
50 51 5.716228 TCACATGGATTGGAGTTTTAAGCAT 59.284 36.000 0.00 0.00 0.00 3.79
51 52 5.076182 TCACATGGATTGGAGTTTTAAGCA 58.924 37.500 0.00 0.00 0.00 3.91
52 53 5.643379 TCACATGGATTGGAGTTTTAAGC 57.357 39.130 0.00 0.00 0.00 3.09
53 54 7.605449 ACATTCACATGGATTGGAGTTTTAAG 58.395 34.615 0.00 0.00 34.27 1.85
54 55 7.537596 ACATTCACATGGATTGGAGTTTTAA 57.462 32.000 0.00 0.00 34.27 1.52
55 56 8.821686 ATACATTCACATGGATTGGAGTTTTA 57.178 30.769 0.00 0.00 28.02 1.52
56 57 7.722949 ATACATTCACATGGATTGGAGTTTT 57.277 32.000 0.00 0.00 28.02 2.43
57 58 7.722949 AATACATTCACATGGATTGGAGTTT 57.277 32.000 0.00 0.00 41.77 2.66
58 59 8.853126 CATAATACATTCACATGGATTGGAGTT 58.147 33.333 0.00 0.00 43.03 3.01
59 60 7.040201 GCATAATACATTCACATGGATTGGAGT 60.040 37.037 0.00 0.00 43.03 3.85
60 61 7.040271 TGCATAATACATTCACATGGATTGGAG 60.040 37.037 0.00 0.00 43.03 3.86
61 62 6.776603 TGCATAATACATTCACATGGATTGGA 59.223 34.615 0.00 0.00 43.03 3.53
62 63 6.983984 TGCATAATACATTCACATGGATTGG 58.016 36.000 0.00 0.00 43.03 3.16
63 64 7.062956 GCATGCATAATACATTCACATGGATTG 59.937 37.037 14.21 1.55 43.03 2.67
64 65 7.094631 GCATGCATAATACATTCACATGGATT 58.905 34.615 14.21 0.00 44.91 3.01
65 66 6.209788 TGCATGCATAATACATTCACATGGAT 59.790 34.615 18.46 0.00 35.13 3.41
66 67 5.535406 TGCATGCATAATACATTCACATGGA 59.465 36.000 18.46 0.00 35.21 3.41
67 68 5.774630 TGCATGCATAATACATTCACATGG 58.225 37.500 18.46 0.00 35.21 3.66
68 69 6.310224 CCATGCATGCATAATACATTCACATG 59.690 38.462 31.73 15.91 37.17 3.21
69 70 6.394809 CCATGCATGCATAATACATTCACAT 58.605 36.000 31.73 3.67 34.91 3.21
70 71 5.279056 CCCATGCATGCATAATACATTCACA 60.279 40.000 31.73 0.00 34.91 3.58
71 72 5.165676 CCCATGCATGCATAATACATTCAC 58.834 41.667 31.73 0.00 34.91 3.18
72 73 4.833938 ACCCATGCATGCATAATACATTCA 59.166 37.500 31.73 0.00 34.91 2.57
73 74 5.395682 ACCCATGCATGCATAATACATTC 57.604 39.130 31.73 0.00 34.91 2.67
74 75 5.811796 AACCCATGCATGCATAATACATT 57.188 34.783 31.73 16.93 34.91 2.71
75 76 5.185635 GGTAACCCATGCATGCATAATACAT 59.814 40.000 31.73 17.79 34.91 2.29
76 77 4.522405 GGTAACCCATGCATGCATAATACA 59.478 41.667 31.73 14.94 34.91 2.29
77 78 4.766891 AGGTAACCCATGCATGCATAATAC 59.233 41.667 31.73 26.19 33.55 1.89
78 79 4.996793 AGGTAACCCATGCATGCATAATA 58.003 39.130 31.73 18.46 33.55 0.98
79 80 3.848303 AGGTAACCCATGCATGCATAAT 58.152 40.909 31.73 19.40 33.55 1.28
80 81 3.311167 AGGTAACCCATGCATGCATAA 57.689 42.857 31.73 12.86 33.55 1.90
81 82 3.311167 AAGGTAACCCATGCATGCATA 57.689 42.857 31.73 14.35 33.55 3.14
82 83 2.163810 AAGGTAACCCATGCATGCAT 57.836 45.000 27.46 27.46 34.90 3.96
83 84 1.549620 CAAAGGTAACCCATGCATGCA 59.450 47.619 25.04 25.04 37.17 3.96
84 85 1.550072 ACAAAGGTAACCCATGCATGC 59.450 47.619 21.69 11.82 37.17 4.06
85 86 3.181487 GCTACAAAGGTAACCCATGCATG 60.181 47.826 20.19 20.19 37.17 4.06
86 87 3.023832 GCTACAAAGGTAACCCATGCAT 58.976 45.455 0.00 0.00 37.17 3.96
87 88 2.041081 AGCTACAAAGGTAACCCATGCA 59.959 45.455 0.00 0.00 37.17 3.96
88 89 2.723273 AGCTACAAAGGTAACCCATGC 58.277 47.619 0.00 0.00 37.17 4.06
89 90 5.353394 TCTAGCTACAAAGGTAACCCATG 57.647 43.478 0.00 0.00 35.36 3.66
90 91 5.487845 AGTTCTAGCTACAAAGGTAACCCAT 59.512 40.000 0.00 0.00 35.36 4.00
91 92 4.842380 AGTTCTAGCTACAAAGGTAACCCA 59.158 41.667 0.00 0.00 35.36 4.51
92 93 5.417754 AGTTCTAGCTACAAAGGTAACCC 57.582 43.478 0.00 0.00 35.36 4.11
93 94 7.160049 AGAAAGTTCTAGCTACAAAGGTAACC 58.840 38.462 0.00 0.00 35.36 2.85
94 95 7.871463 TGAGAAAGTTCTAGCTACAAAGGTAAC 59.129 37.037 0.00 0.00 37.73 2.50
95 96 7.959175 TGAGAAAGTTCTAGCTACAAAGGTAA 58.041 34.615 0.00 0.00 37.73 2.85
96 97 7.534723 TGAGAAAGTTCTAGCTACAAAGGTA 57.465 36.000 0.00 0.00 37.73 3.08
97 98 6.420913 TGAGAAAGTTCTAGCTACAAAGGT 57.579 37.500 0.00 0.00 37.73 3.50
98 99 6.314896 CCATGAGAAAGTTCTAGCTACAAAGG 59.685 42.308 0.00 0.00 37.73 3.11
99 100 7.099764 TCCATGAGAAAGTTCTAGCTACAAAG 58.900 38.462 0.00 0.00 37.73 2.77
100 101 7.004555 TCCATGAGAAAGTTCTAGCTACAAA 57.995 36.000 0.00 0.00 37.73 2.83
101 102 6.605471 TCCATGAGAAAGTTCTAGCTACAA 57.395 37.500 0.00 0.00 37.73 2.41
102 103 6.398918 GTTCCATGAGAAAGTTCTAGCTACA 58.601 40.000 0.00 0.00 37.73 2.74
103 104 5.813157 GGTTCCATGAGAAAGTTCTAGCTAC 59.187 44.000 0.00 0.00 37.73 3.58
104 105 5.394224 CGGTTCCATGAGAAAGTTCTAGCTA 60.394 44.000 0.00 0.00 37.73 3.32
105 106 4.621747 CGGTTCCATGAGAAAGTTCTAGCT 60.622 45.833 0.00 0.00 37.73 3.32
106 107 3.619038 CGGTTCCATGAGAAAGTTCTAGC 59.381 47.826 0.00 0.00 37.73 3.42
107 108 5.073311 TCGGTTCCATGAGAAAGTTCTAG 57.927 43.478 0.00 0.00 37.73 2.43
108 109 5.677319 ATCGGTTCCATGAGAAAGTTCTA 57.323 39.130 0.00 0.00 37.73 2.10
109 110 4.559862 ATCGGTTCCATGAGAAAGTTCT 57.440 40.909 0.00 0.00 41.00 3.01
110 111 6.106673 TCTTATCGGTTCCATGAGAAAGTTC 58.893 40.000 0.00 0.00 35.85 3.01
111 112 6.049955 TCTTATCGGTTCCATGAGAAAGTT 57.950 37.500 0.00 0.00 35.85 2.66
112 113 5.677319 TCTTATCGGTTCCATGAGAAAGT 57.323 39.130 0.00 0.00 35.85 2.66
113 114 6.341316 TCTTCTTATCGGTTCCATGAGAAAG 58.659 40.000 0.00 0.00 35.85 2.62
114 115 6.154534 TCTCTTCTTATCGGTTCCATGAGAAA 59.845 38.462 0.00 0.00 35.85 2.52
115 116 5.656859 TCTCTTCTTATCGGTTCCATGAGAA 59.343 40.000 0.00 0.00 0.00 2.87
116 117 5.201243 TCTCTTCTTATCGGTTCCATGAGA 58.799 41.667 0.00 0.00 0.00 3.27
117 118 5.521906 TCTCTTCTTATCGGTTCCATGAG 57.478 43.478 0.00 0.00 0.00 2.90
118 119 6.294010 CGTATCTCTTCTTATCGGTTCCATGA 60.294 42.308 0.00 0.00 0.00 3.07
119 120 5.859114 CGTATCTCTTCTTATCGGTTCCATG 59.141 44.000 0.00 0.00 0.00 3.66
120 121 5.768662 TCGTATCTCTTCTTATCGGTTCCAT 59.231 40.000 0.00 0.00 0.00 3.41
121 122 5.128205 TCGTATCTCTTCTTATCGGTTCCA 58.872 41.667 0.00 0.00 0.00 3.53
122 123 5.335035 CCTCGTATCTCTTCTTATCGGTTCC 60.335 48.000 0.00 0.00 0.00 3.62
123 124 5.239087 ACCTCGTATCTCTTCTTATCGGTTC 59.761 44.000 0.00 0.00 0.00 3.62
124 125 5.131784 ACCTCGTATCTCTTCTTATCGGTT 58.868 41.667 0.00 0.00 0.00 4.44
125 126 4.716794 ACCTCGTATCTCTTCTTATCGGT 58.283 43.478 0.00 0.00 0.00 4.69
126 127 5.453648 CAACCTCGTATCTCTTCTTATCGG 58.546 45.833 0.00 0.00 0.00 4.18
127 128 4.912766 GCAACCTCGTATCTCTTCTTATCG 59.087 45.833 0.00 0.00 0.00 2.92
128 129 6.079424 AGCAACCTCGTATCTCTTCTTATC 57.921 41.667 0.00 0.00 0.00 1.75
129 130 6.472686 AAGCAACCTCGTATCTCTTCTTAT 57.527 37.500 0.00 0.00 0.00 1.73
130 131 5.916661 AAGCAACCTCGTATCTCTTCTTA 57.083 39.130 0.00 0.00 0.00 2.10
131 132 4.810191 AAGCAACCTCGTATCTCTTCTT 57.190 40.909 0.00 0.00 0.00 2.52
132 133 5.185249 TGTTAAGCAACCTCGTATCTCTTCT 59.815 40.000 0.00 0.00 33.41 2.85
133 134 5.288952 GTGTTAAGCAACCTCGTATCTCTTC 59.711 44.000 0.00 0.00 33.41 2.87
134 135 5.169295 GTGTTAAGCAACCTCGTATCTCTT 58.831 41.667 0.00 0.00 33.41 2.85
135 136 4.674623 CGTGTTAAGCAACCTCGTATCTCT 60.675 45.833 0.00 0.00 33.41 3.10
136 137 3.546670 CGTGTTAAGCAACCTCGTATCTC 59.453 47.826 0.00 0.00 33.41 2.75
137 138 3.192001 TCGTGTTAAGCAACCTCGTATCT 59.808 43.478 0.00 0.00 34.70 1.98
138 139 3.504863 TCGTGTTAAGCAACCTCGTATC 58.495 45.455 0.00 0.00 34.70 2.24
139 140 3.581024 TCGTGTTAAGCAACCTCGTAT 57.419 42.857 0.00 0.00 34.70 3.06
140 141 3.192001 AGATCGTGTTAAGCAACCTCGTA 59.808 43.478 0.00 0.00 34.70 3.43
141 142 2.029290 AGATCGTGTTAAGCAACCTCGT 60.029 45.455 0.00 0.00 34.70 4.18
142 143 2.607187 AGATCGTGTTAAGCAACCTCG 58.393 47.619 0.00 0.00 33.41 4.63
143 144 5.348986 TGATAGATCGTGTTAAGCAACCTC 58.651 41.667 0.00 0.00 33.41 3.85
144 145 5.339008 TGATAGATCGTGTTAAGCAACCT 57.661 39.130 0.00 0.00 33.41 3.50
145 146 6.604735 AATGATAGATCGTGTTAAGCAACC 57.395 37.500 0.00 0.00 33.41 3.77
146 147 9.031360 TCTAAATGATAGATCGTGTTAAGCAAC 57.969 33.333 0.00 0.00 35.06 4.17
147 148 9.594478 TTCTAAATGATAGATCGTGTTAAGCAA 57.406 29.630 0.00 0.00 0.00 3.91
148 149 9.249457 CTTCTAAATGATAGATCGTGTTAAGCA 57.751 33.333 0.00 0.00 0.00 3.91
149 150 9.250624 ACTTCTAAATGATAGATCGTGTTAAGC 57.749 33.333 0.00 0.00 0.00 3.09
152 153 9.031360 GCAACTTCTAAATGATAGATCGTGTTA 57.969 33.333 0.00 0.00 0.00 2.41
153 154 7.766278 AGCAACTTCTAAATGATAGATCGTGTT 59.234 33.333 0.00 0.00 0.00 3.32
154 155 7.268586 AGCAACTTCTAAATGATAGATCGTGT 58.731 34.615 0.00 0.00 0.00 4.49
155 156 7.706281 AGCAACTTCTAAATGATAGATCGTG 57.294 36.000 0.00 0.00 0.00 4.35
156 157 8.723942 AAAGCAACTTCTAAATGATAGATCGT 57.276 30.769 0.00 0.00 0.00 3.73
159 160 9.844257 AGCTAAAGCAACTTCTAAATGATAGAT 57.156 29.630 4.54 0.00 45.16 1.98
163 164 9.401058 ACATAGCTAAAGCAACTTCTAAATGAT 57.599 29.630 4.54 0.00 45.16 2.45
164 165 8.668353 CACATAGCTAAAGCAACTTCTAAATGA 58.332 33.333 4.54 0.00 45.16 2.57
165 166 8.454106 ACACATAGCTAAAGCAACTTCTAAATG 58.546 33.333 4.54 0.00 45.16 2.32
166 167 8.567285 ACACATAGCTAAAGCAACTTCTAAAT 57.433 30.769 4.54 0.00 45.16 1.40
167 168 7.979444 ACACATAGCTAAAGCAACTTCTAAA 57.021 32.000 4.54 0.00 45.16 1.85
168 169 7.979444 AACACATAGCTAAAGCAACTTCTAA 57.021 32.000 4.54 0.00 45.16 2.10
169 170 9.496873 TTTAACACATAGCTAAAGCAACTTCTA 57.503 29.630 4.54 0.00 45.16 2.10
170 171 7.979444 TTAACACATAGCTAAAGCAACTTCT 57.021 32.000 4.54 0.00 45.16 2.85
171 172 9.458374 TTTTTAACACATAGCTAAAGCAACTTC 57.542 29.630 4.54 0.00 45.16 3.01
203 204 9.836864 ACATGCTTGTGATATGTAATCTAGAAA 57.163 29.630 4.14 0.00 33.57 2.52
204 205 9.481340 GACATGCTTGTGATATGTAATCTAGAA 57.519 33.333 10.37 0.00 35.79 2.10
205 206 8.641541 TGACATGCTTGTGATATGTAATCTAGA 58.358 33.333 10.37 0.00 35.79 2.43
206 207 8.822652 TGACATGCTTGTGATATGTAATCTAG 57.177 34.615 10.37 0.00 35.79 2.43
207 208 9.783081 ATTGACATGCTTGTGATATGTAATCTA 57.217 29.630 10.37 0.00 35.79 1.98
208 209 8.687292 ATTGACATGCTTGTGATATGTAATCT 57.313 30.769 10.37 0.00 35.79 2.40
210 211 9.565090 ACTATTGACATGCTTGTGATATGTAAT 57.435 29.630 10.37 0.00 35.79 1.89
211 212 8.962884 ACTATTGACATGCTTGTGATATGTAA 57.037 30.769 10.37 0.00 35.79 2.41
213 214 8.962884 TTACTATTGACATGCTTGTGATATGT 57.037 30.769 10.37 6.30 35.79 2.29
215 216 9.783081 TGATTACTATTGACATGCTTGTGATAT 57.217 29.630 10.37 3.50 35.79 1.63
216 217 9.612066 TTGATTACTATTGACATGCTTGTGATA 57.388 29.630 10.37 7.43 35.79 2.15
217 218 8.400947 GTTGATTACTATTGACATGCTTGTGAT 58.599 33.333 10.37 6.69 35.79 3.06
218 219 7.148255 GGTTGATTACTATTGACATGCTTGTGA 60.148 37.037 10.37 0.00 35.79 3.58
219 220 6.968904 GGTTGATTACTATTGACATGCTTGTG 59.031 38.462 10.37 0.00 35.79 3.33
220 221 6.095440 GGGTTGATTACTATTGACATGCTTGT 59.905 38.462 4.68 4.68 39.32 3.16
221 222 6.319658 AGGGTTGATTACTATTGACATGCTTG 59.680 38.462 0.00 0.00 0.00 4.01
222 223 6.426587 AGGGTTGATTACTATTGACATGCTT 58.573 36.000 0.00 0.00 0.00 3.91
223 224 6.006275 AGGGTTGATTACTATTGACATGCT 57.994 37.500 0.00 0.00 0.00 3.79
224 225 6.058183 AGAGGGTTGATTACTATTGACATGC 58.942 40.000 0.00 0.00 0.00 4.06
225 226 9.784531 ATAAGAGGGTTGATTACTATTGACATG 57.215 33.333 0.00 0.00 0.00 3.21
227 228 9.213777 AGATAAGAGGGTTGATTACTATTGACA 57.786 33.333 0.00 0.00 0.00 3.58
233 234 9.725206 AGGTTTAGATAAGAGGGTTGATTACTA 57.275 33.333 0.00 0.00 0.00 1.82
234 235 8.625467 AGGTTTAGATAAGAGGGTTGATTACT 57.375 34.615 0.00 0.00 0.00 2.24
237 238 9.059023 AGTTAGGTTTAGATAAGAGGGTTGATT 57.941 33.333 0.00 0.00 0.00 2.57
238 239 8.625467 AGTTAGGTTTAGATAAGAGGGTTGAT 57.375 34.615 0.00 0.00 0.00 2.57
239 240 8.445361 AAGTTAGGTTTAGATAAGAGGGTTGA 57.555 34.615 0.00 0.00 0.00 3.18
242 243 9.779951 TCTTAAGTTAGGTTTAGATAAGAGGGT 57.220 33.333 1.63 0.00 0.00 4.34
273 274 4.649977 AGTTTTCTCTCGATCGTCGTAAG 58.350 43.478 15.94 4.63 41.35 2.34
274 275 4.675190 AGTTTTCTCTCGATCGTCGTAA 57.325 40.909 15.94 3.47 41.35 3.18
275 276 5.980698 ATAGTTTTCTCTCGATCGTCGTA 57.019 39.130 15.94 0.00 41.35 3.43
276 277 4.879104 ATAGTTTTCTCTCGATCGTCGT 57.121 40.909 15.94 0.00 41.35 4.34
277 278 5.735324 TGTATAGTTTTCTCTCGATCGTCG 58.265 41.667 15.94 7.88 42.10 5.12
278 279 6.579292 CCATGTATAGTTTTCTCTCGATCGTC 59.421 42.308 15.94 0.00 0.00 4.20
279 280 6.039493 ACCATGTATAGTTTTCTCTCGATCGT 59.961 38.462 15.94 0.00 0.00 3.73
280 281 6.360947 CACCATGTATAGTTTTCTCTCGATCG 59.639 42.308 9.36 9.36 0.00 3.69
281 282 7.426410 TCACCATGTATAGTTTTCTCTCGATC 58.574 38.462 0.00 0.00 0.00 3.69
282 283 7.348080 TCACCATGTATAGTTTTCTCTCGAT 57.652 36.000 0.00 0.00 0.00 3.59
283 284 6.769134 TCACCATGTATAGTTTTCTCTCGA 57.231 37.500 0.00 0.00 0.00 4.04
284 285 6.074088 GCATCACCATGTATAGTTTTCTCTCG 60.074 42.308 0.00 0.00 31.86 4.04
285 286 6.763135 TGCATCACCATGTATAGTTTTCTCTC 59.237 38.462 0.00 0.00 31.86 3.20
286 287 6.540189 GTGCATCACCATGTATAGTTTTCTCT 59.460 38.462 0.00 0.00 31.86 3.10
287 288 6.316140 TGTGCATCACCATGTATAGTTTTCTC 59.684 38.462 0.00 0.00 32.73 2.87
288 289 6.179756 TGTGCATCACCATGTATAGTTTTCT 58.820 36.000 0.00 0.00 32.73 2.52
289 290 6.435430 TGTGCATCACCATGTATAGTTTTC 57.565 37.500 0.00 0.00 32.73 2.29
290 291 6.832520 TTGTGCATCACCATGTATAGTTTT 57.167 33.333 0.00 0.00 32.73 2.43
291 292 7.408756 AATTGTGCATCACCATGTATAGTTT 57.591 32.000 0.00 0.00 32.73 2.66
292 293 8.696043 ATAATTGTGCATCACCATGTATAGTT 57.304 30.769 0.00 0.00 32.73 2.24
293 294 8.159447 AGATAATTGTGCATCACCATGTATAGT 58.841 33.333 0.00 0.00 32.73 2.12
294 295 8.557592 AGATAATTGTGCATCACCATGTATAG 57.442 34.615 0.00 0.00 32.73 1.31
295 296 8.922931 AAGATAATTGTGCATCACCATGTATA 57.077 30.769 0.00 0.00 32.73 1.47
296 297 7.828508 AAGATAATTGTGCATCACCATGTAT 57.171 32.000 0.00 0.00 32.73 2.29
297 298 7.201812 GGAAAGATAATTGTGCATCACCATGTA 60.202 37.037 0.00 0.00 32.73 2.29
298 299 6.406177 GGAAAGATAATTGTGCATCACCATGT 60.406 38.462 0.00 0.00 32.73 3.21
299 300 5.981315 GGAAAGATAATTGTGCATCACCATG 59.019 40.000 0.00 0.00 32.73 3.66
300 301 5.657745 TGGAAAGATAATTGTGCATCACCAT 59.342 36.000 0.00 0.00 32.73 3.55
301 302 5.015515 TGGAAAGATAATTGTGCATCACCA 58.984 37.500 0.00 0.00 32.73 4.17
302 303 5.581126 TGGAAAGATAATTGTGCATCACC 57.419 39.130 0.00 0.00 32.73 4.02
303 304 6.867816 TGTTTGGAAAGATAATTGTGCATCAC 59.132 34.615 0.00 0.00 34.56 3.06
304 305 6.990798 TGTTTGGAAAGATAATTGTGCATCA 58.009 32.000 0.00 0.00 0.00 3.07
305 306 7.887996 TTGTTTGGAAAGATAATTGTGCATC 57.112 32.000 0.00 0.00 0.00 3.91
306 307 8.851541 ATTTGTTTGGAAAGATAATTGTGCAT 57.148 26.923 0.00 0.00 0.00 3.96
307 308 7.930325 TGATTTGTTTGGAAAGATAATTGTGCA 59.070 29.630 0.00 0.00 0.00 4.57
308 309 8.309163 TGATTTGTTTGGAAAGATAATTGTGC 57.691 30.769 0.00 0.00 0.00 4.57
315 316 9.598517 GGCAAATATGATTTGTTTGGAAAGATA 57.401 29.630 12.25 0.00 34.34 1.98
316 317 7.278424 CGGCAAATATGATTTGTTTGGAAAGAT 59.722 33.333 12.25 0.00 34.34 2.40
317 318 6.589523 CGGCAAATATGATTTGTTTGGAAAGA 59.410 34.615 12.25 0.00 34.34 2.52
318 319 6.589523 TCGGCAAATATGATTTGTTTGGAAAG 59.410 34.615 12.25 0.00 34.34 2.62
319 320 6.367422 GTCGGCAAATATGATTTGTTTGGAAA 59.633 34.615 12.25 0.00 34.34 3.13
320 321 5.866633 GTCGGCAAATATGATTTGTTTGGAA 59.133 36.000 12.25 0.00 34.34 3.53
321 322 5.047731 TGTCGGCAAATATGATTTGTTTGGA 60.048 36.000 12.25 4.06 34.34 3.53
322 323 5.167121 TGTCGGCAAATATGATTTGTTTGG 58.833 37.500 12.25 2.24 34.34 3.28
323 324 6.890663 ATGTCGGCAAATATGATTTGTTTG 57.109 33.333 12.25 0.00 36.26 2.93
324 325 7.095910 TGAATGTCGGCAAATATGATTTGTTT 58.904 30.769 12.25 0.00 0.00 2.83
325 326 6.629128 TGAATGTCGGCAAATATGATTTGTT 58.371 32.000 12.25 0.03 0.00 2.83
326 327 6.206395 TGAATGTCGGCAAATATGATTTGT 57.794 33.333 12.25 0.00 0.00 2.83
327 328 7.522901 TTTGAATGTCGGCAAATATGATTTG 57.477 32.000 0.00 7.43 0.00 2.32
328 329 9.814899 TTATTTGAATGTCGGCAAATATGATTT 57.185 25.926 0.00 0.00 42.90 2.17
329 330 9.985730 ATTATTTGAATGTCGGCAAATATGATT 57.014 25.926 0.00 0.00 42.90 2.57
335 336 9.912634 CCTATTATTATTTGAATGTCGGCAAAT 57.087 29.630 0.00 0.00 44.36 2.32
336 337 9.126151 TCCTATTATTATTTGAATGTCGGCAAA 57.874 29.630 0.00 0.00 38.25 3.68
337 338 8.684386 TCCTATTATTATTTGAATGTCGGCAA 57.316 30.769 0.00 0.00 0.00 4.52
338 339 8.862325 ATCCTATTATTATTTGAATGTCGGCA 57.138 30.769 0.00 0.00 0.00 5.69
339 340 9.774742 GAATCCTATTATTATTTGAATGTCGGC 57.225 33.333 0.00 0.00 0.00 5.54
356 357 9.699410 TGATACCTTTTGTCAATGAATCCTATT 57.301 29.630 0.00 0.00 0.00 1.73
357 358 9.872684 ATGATACCTTTTGTCAATGAATCCTAT 57.127 29.630 0.00 0.00 0.00 2.57
359 360 9.872684 ATATGATACCTTTTGTCAATGAATCCT 57.127 29.630 0.00 0.00 0.00 3.24
364 365 8.623903 GCTTGATATGATACCTTTTGTCAATGA 58.376 33.333 0.00 0.00 0.00 2.57
365 366 7.864379 GGCTTGATATGATACCTTTTGTCAATG 59.136 37.037 0.00 0.00 0.00 2.82
366 367 7.781693 AGGCTTGATATGATACCTTTTGTCAAT 59.218 33.333 0.00 0.00 0.00 2.57
367 368 7.118723 AGGCTTGATATGATACCTTTTGTCAA 58.881 34.615 0.00 0.00 0.00 3.18
368 369 6.662755 AGGCTTGATATGATACCTTTTGTCA 58.337 36.000 0.00 0.00 0.00 3.58
369 370 7.715249 TGTAGGCTTGATATGATACCTTTTGTC 59.285 37.037 0.00 0.00 0.00 3.18
370 371 7.573710 TGTAGGCTTGATATGATACCTTTTGT 58.426 34.615 0.00 0.00 0.00 2.83
371 372 8.450578 TTGTAGGCTTGATATGATACCTTTTG 57.549 34.615 0.00 0.00 0.00 2.44
408 409 9.762933 GCATGGGCTATTAAATATTGAAAGAAA 57.237 29.630 0.00 0.00 36.96 2.52
409 410 8.922237 TGCATGGGCTATTAAATATTGAAAGAA 58.078 29.630 0.00 0.00 41.91 2.52
410 411 8.476064 TGCATGGGCTATTAAATATTGAAAGA 57.524 30.769 0.00 0.00 41.91 2.52
411 412 7.330208 GCTGCATGGGCTATTAAATATTGAAAG 59.670 37.037 0.00 0.00 41.91 2.62
412 413 7.153985 GCTGCATGGGCTATTAAATATTGAAA 58.846 34.615 0.00 0.00 41.91 2.69
413 414 6.267242 TGCTGCATGGGCTATTAAATATTGAA 59.733 34.615 0.00 0.00 41.91 2.69
414 415 5.774184 TGCTGCATGGGCTATTAAATATTGA 59.226 36.000 0.00 0.00 41.91 2.57
415 416 6.028146 TGCTGCATGGGCTATTAAATATTG 57.972 37.500 0.00 0.00 41.91 1.90
416 417 5.337009 GCTGCTGCATGGGCTATTAAATATT 60.337 40.000 11.11 0.00 41.91 1.28
417 418 4.159135 GCTGCTGCATGGGCTATTAAATAT 59.841 41.667 11.11 0.00 41.91 1.28
418 419 3.507233 GCTGCTGCATGGGCTATTAAATA 59.493 43.478 11.11 0.00 41.91 1.40
419 420 2.298163 GCTGCTGCATGGGCTATTAAAT 59.702 45.455 11.11 0.00 41.91 1.40
420 421 1.682854 GCTGCTGCATGGGCTATTAAA 59.317 47.619 11.11 0.00 41.91 1.52
421 422 1.321474 GCTGCTGCATGGGCTATTAA 58.679 50.000 11.11 0.00 41.91 1.40
422 423 0.183252 TGCTGCTGCATGGGCTATTA 59.817 50.000 14.93 0.00 45.31 0.98
423 424 1.076559 TGCTGCTGCATGGGCTATT 60.077 52.632 14.93 0.00 45.31 1.73
424 425 2.599032 TGCTGCTGCATGGGCTAT 59.401 55.556 14.93 0.00 45.31 2.97
433 434 3.058160 ATCAACCCGTGCTGCTGC 61.058 61.111 8.89 8.89 40.20 5.25
434 435 1.672030 TCATCAACCCGTGCTGCTG 60.672 57.895 0.00 0.00 0.00 4.41
435 436 1.672356 GTCATCAACCCGTGCTGCT 60.672 57.895 0.00 0.00 0.00 4.24
436 437 0.391130 TAGTCATCAACCCGTGCTGC 60.391 55.000 0.00 0.00 0.00 5.25
437 438 1.066858 ACTAGTCATCAACCCGTGCTG 60.067 52.381 0.00 0.00 0.00 4.41
438 439 1.066858 CACTAGTCATCAACCCGTGCT 60.067 52.381 0.00 0.00 0.00 4.40
439 440 1.337823 ACACTAGTCATCAACCCGTGC 60.338 52.381 0.00 0.00 33.91 5.34
440 441 2.607187 GACACTAGTCATCAACCCGTG 58.393 52.381 0.00 0.00 44.34 4.94
451 452 7.963532 TCCAATATCCCTTATTGACACTAGTC 58.036 38.462 0.00 0.00 46.88 2.59
452 453 7.931015 TCCAATATCCCTTATTGACACTAGT 57.069 36.000 6.86 0.00 46.88 2.57
453 454 9.442047 GAATCCAATATCCCTTATTGACACTAG 57.558 37.037 6.86 0.00 46.88 2.57
454 455 8.944138 TGAATCCAATATCCCTTATTGACACTA 58.056 33.333 6.86 0.00 46.88 2.74
455 456 7.815383 TGAATCCAATATCCCTTATTGACACT 58.185 34.615 6.86 0.00 46.88 3.55
456 457 8.641498 ATGAATCCAATATCCCTTATTGACAC 57.359 34.615 6.86 0.00 46.88 3.67
485 486 0.749454 ACGAGGGATTGGCTGCATTC 60.749 55.000 0.50 0.00 0.00 2.67
488 489 1.070134 GTATACGAGGGATTGGCTGCA 59.930 52.381 0.50 0.00 0.00 4.41
520 521 3.996921 TTGGGGTTTGCGTATACCTTA 57.003 42.857 12.40 0.39 34.75 2.69
570 571 3.636679 TCCATGTAGAGAAGGGTCTGAG 58.363 50.000 0.00 0.00 32.80 3.35
574 575 3.181461 CCACATCCATGTAGAGAAGGGTC 60.181 52.174 0.00 0.00 39.39 4.46
635 636 5.931724 CCAATGAAACCCTTGGTTGTAATTC 59.068 40.000 0.00 0.00 46.20 2.17
653 654 3.973206 ACGGTGTAGATCAACCAATGA 57.027 42.857 11.45 0.00 43.67 2.57
657 658 6.698329 CGAATTATTACGGTGTAGATCAACCA 59.302 38.462 11.45 0.00 0.00 3.67
679 680 0.323629 GTTCATCTGGTGGGACCGAA 59.676 55.000 0.00 0.00 42.58 4.30
738 739 9.074576 TGAGACCGAGTTATTATGCTTTAGATA 57.925 33.333 0.00 0.00 0.00 1.98
746 747 4.051922 CTGGTGAGACCGAGTTATTATGC 58.948 47.826 0.00 0.00 42.58 3.14
762 763 5.571784 AATACGAGACGTTAATCTGGTGA 57.428 39.130 1.53 0.00 41.54 4.02
932 983 5.692115 TCTATGTACAGAAGGATTTGGCA 57.308 39.130 0.33 0.00 0.00 4.92
1160 1218 1.452110 CCTGATGTGGCATCGTCAAA 58.548 50.000 11.34 0.00 33.72 2.69
1271 1330 2.980233 GGCGTGCTCAACTGGCTT 60.980 61.111 0.00 0.00 0.00 4.35
2178 2507 4.321966 TCACCGTCGGCCAATGCA 62.322 61.111 12.28 0.00 40.13 3.96
2677 3006 4.481930 TTTTTGTACTCCATGCGTGAAG 57.518 40.909 7.72 0.00 0.00 3.02
2887 4365 1.025041 GGGAGGCCGCTATTTTGAAG 58.975 55.000 6.40 0.00 0.00 3.02
2919 4397 0.040067 CTTCAGTGCGGTCTTTTGGC 60.040 55.000 0.00 0.00 0.00 4.52
3130 4678 4.823989 GGAGTGTCATATTGAAATCCCCAG 59.176 45.833 0.00 0.00 0.00 4.45
3157 4705 4.489679 AAAACGAAGGAATCAAGTCTGC 57.510 40.909 0.00 0.00 0.00 4.26
3399 5254 0.041982 GTCCTCTCCTCTCCCCAAGT 59.958 60.000 0.00 0.00 0.00 3.16
3422 5283 1.407258 GTGATGGGAAGAGAGAGACCG 59.593 57.143 0.00 0.00 0.00 4.79
3423 5284 1.760029 GGTGATGGGAAGAGAGAGACC 59.240 57.143 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.