Multiple sequence alignment - TraesCS7B01G408600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G408600 chr7B 100.000 3902 0 0 1 3902 677884530 677880629 0.000000e+00 7206.0
1 TraesCS7B01G408600 chr7B 97.453 2159 52 3 1745 3902 677962480 677964636 0.000000e+00 3679.0
2 TraesCS7B01G408600 chr7B 94.234 1110 42 4 662 1749 677961030 677962139 0.000000e+00 1676.0
3 TraesCS7B01G408600 chr7B 96.595 793 21 4 1918 2710 677850724 677849938 0.000000e+00 1310.0
4 TraesCS7B01G408600 chr7B 77.525 2198 379 73 1747 3900 690031587 690033713 0.000000e+00 1216.0
5 TraesCS7B01G408600 chr7B 76.845 2155 377 70 1748 3844 690200747 690202837 0.000000e+00 1103.0
6 TraesCS7B01G408600 chr7B 88.116 690 77 5 2702 3391 678508436 678509120 0.000000e+00 815.0
7 TraesCS7B01G408600 chr7B 95.668 277 9 1 1 277 127887316 127887589 3.580000e-120 442.0
8 TraesCS7B01G408600 chr7B 93.478 276 15 1 1 276 691855396 691855668 1.310000e-109 407.0
9 TraesCS7B01G408600 chr7B 92.982 171 11 1 487 657 677960897 677961066 8.370000e-62 248.0
10 TraesCS7B01G408600 chr7B 94.915 118 5 1 3785 3901 677977277 677977394 2.390000e-42 183.0
11 TraesCS7B01G408600 chr7B 97.500 40 1 0 621 660 677883869 677883830 7.000000e-08 69.4
12 TraesCS7B01G408600 chr7B 97.500 40 1 0 662 701 677883910 677883871 7.000000e-08 69.4
13 TraesCS7B01G408600 chr7A 90.417 2160 179 12 1745 3902 691467307 691465174 0.000000e+00 2817.0
14 TraesCS7B01G408600 chr7A 86.685 1119 91 26 662 1745 691468856 691467761 0.000000e+00 1188.0
15 TraesCS7B01G408600 chr7A 81.387 822 112 22 936 1731 699019021 699019827 1.980000e-177 632.0
16 TraesCS7B01G408600 chr7A 78.538 1053 144 39 723 1718 697877989 697879016 5.540000e-173 617.0
17 TraesCS7B01G408600 chr7A 81.477 799 106 23 936 1707 698762287 698763070 5.540000e-173 617.0
18 TraesCS7B01G408600 chr7A 78.273 1054 147 39 723 1718 697975547 697976576 1.550000e-168 603.0
19 TraesCS7B01G408600 chr7A 78.158 1053 149 38 723 1718 697823342 697824370 2.600000e-166 595.0
20 TraesCS7B01G408600 chr7A 83.040 625 76 16 936 1543 698849016 698849627 1.230000e-149 540.0
21 TraesCS7B01G408600 chr7A 90.955 199 16 1 297 495 197153531 197153335 2.310000e-67 267.0
22 TraesCS7B01G408600 chr7A 89.302 215 18 4 282 496 706053785 706053994 8.310000e-67 265.0
23 TraesCS7B01G408600 chr7A 91.129 124 11 0 537 660 691468940 691468817 6.710000e-38 169.0
24 TraesCS7B01G408600 chr7A 89.583 48 3 2 537 584 716502660 716502705 4.210000e-05 60.2
25 TraesCS7B01G408600 chr7D 89.769 2160 188 14 1745 3902 599245042 599242914 0.000000e+00 2734.0
26 TraesCS7B01G408600 chr7D 77.440 2172 372 74 1755 3873 606302894 606305000 0.000000e+00 1188.0
27 TraesCS7B01G408600 chr7D 94.872 429 21 1 3474 3902 598514399 598514826 0.000000e+00 669.0
28 TraesCS7B01G408600 chr7D 77.994 1077 135 49 721 1736 605947105 605948140 2.020000e-162 582.0
29 TraesCS7B01G408600 chr7D 92.806 278 15 4 1 275 529350376 529350101 7.860000e-107 398.0
30 TraesCS7B01G408600 chr7D 94.495 109 6 0 552 660 599246656 599246548 6.710000e-38 169.0
31 TraesCS7B01G408600 chr4B 89.625 2159 210 10 1745 3902 12754961 12757106 0.000000e+00 2734.0
32 TraesCS7B01G408600 chr4B 90.531 1035 94 4 1820 2853 12748167 12749198 0.000000e+00 1365.0
33 TraesCS7B01G408600 chrUn 81.598 826 109 25 936 1731 33118458 33119270 0.000000e+00 643.0
34 TraesCS7B01G408600 chrUn 76.799 1237 224 43 2692 3900 92706443 92705242 1.530000e-178 636.0
35 TraesCS7B01G408600 chr3A 80.700 829 113 27 936 1731 704695733 704694919 5.580000e-168 601.0
36 TraesCS7B01G408600 chr3A 80.700 829 112 27 936 1731 704781610 704780797 5.580000e-168 601.0
37 TraesCS7B01G408600 chr3A 80.385 831 112 28 936 1731 704841554 704840740 5.620000e-163 584.0
38 TraesCS7B01G408600 chr3A 80.312 833 111 29 936 1732 704571254 704572069 7.270000e-162 580.0
39 TraesCS7B01G408600 chr3A 91.589 214 12 5 282 495 7378794 7378587 1.370000e-74 291.0
40 TraesCS7B01G408600 chr1B 94.946 277 12 2 1 277 49562412 49562686 2.150000e-117 433.0
41 TraesCS7B01G408600 chr2B 93.502 277 15 1 1 277 51092191 51091918 3.630000e-110 409.0
42 TraesCS7B01G408600 chr2B 92.933 283 17 2 1 282 793046761 793046481 3.630000e-110 409.0
43 TraesCS7B01G408600 chr5B 92.754 276 17 1 1 276 43851883 43851611 2.830000e-106 396.0
44 TraesCS7B01G408600 chr5B 90.594 202 16 3 297 495 65726372 65726573 8.310000e-67 265.0
45 TraesCS7B01G408600 chr5D 92.058 277 16 6 1 277 438518317 438518047 6.120000e-103 385.0
46 TraesCS7B01G408600 chr5D 95.349 43 2 0 681 723 511131750 511131792 7.000000e-08 69.4
47 TraesCS7B01G408600 chr3D 91.756 279 20 3 1 277 565998945 565998668 6.120000e-103 385.0
48 TraesCS7B01G408600 chr2D 94.470 217 12 0 277 493 550642730 550642946 6.250000e-88 335.0
49 TraesCS7B01G408600 chr6A 91.133 203 18 0 296 498 33409938 33410140 3.840000e-70 276.0
50 TraesCS7B01G408600 chr2A 91.500 200 16 1 296 495 735575929 735576127 1.380000e-69 274.0
51 TraesCS7B01G408600 chr2A 88.942 208 19 4 289 495 536189635 536189431 1.800000e-63 254.0
52 TraesCS7B01G408600 chr4A 91.667 192 15 1 304 495 587254413 587254223 8.310000e-67 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G408600 chr7B 677880629 677884530 3901 True 2448.266667 7206 98.333333 1 3902 3 chr7B.!!$R2 3901
1 TraesCS7B01G408600 chr7B 677960897 677964636 3739 False 1867.666667 3679 94.889667 487 3902 3 chr7B.!!$F7 3415
2 TraesCS7B01G408600 chr7B 677849938 677850724 786 True 1310.000000 1310 96.595000 1918 2710 1 chr7B.!!$R1 792
3 TraesCS7B01G408600 chr7B 690031587 690033713 2126 False 1216.000000 1216 77.525000 1747 3900 1 chr7B.!!$F4 2153
4 TraesCS7B01G408600 chr7B 690200747 690202837 2090 False 1103.000000 1103 76.845000 1748 3844 1 chr7B.!!$F5 2096
5 TraesCS7B01G408600 chr7B 678508436 678509120 684 False 815.000000 815 88.116000 2702 3391 1 chr7B.!!$F3 689
6 TraesCS7B01G408600 chr7A 691465174 691468940 3766 True 1391.333333 2817 89.410333 537 3902 3 chr7A.!!$R2 3365
7 TraesCS7B01G408600 chr7A 699019021 699019827 806 False 632.000000 632 81.387000 936 1731 1 chr7A.!!$F6 795
8 TraesCS7B01G408600 chr7A 697877989 697879016 1027 False 617.000000 617 78.538000 723 1718 1 chr7A.!!$F2 995
9 TraesCS7B01G408600 chr7A 698762287 698763070 783 False 617.000000 617 81.477000 936 1707 1 chr7A.!!$F4 771
10 TraesCS7B01G408600 chr7A 697975547 697976576 1029 False 603.000000 603 78.273000 723 1718 1 chr7A.!!$F3 995
11 TraesCS7B01G408600 chr7A 697823342 697824370 1028 False 595.000000 595 78.158000 723 1718 1 chr7A.!!$F1 995
12 TraesCS7B01G408600 chr7A 698849016 698849627 611 False 540.000000 540 83.040000 936 1543 1 chr7A.!!$F5 607
13 TraesCS7B01G408600 chr7D 599242914 599246656 3742 True 1451.500000 2734 92.132000 552 3902 2 chr7D.!!$R2 3350
14 TraesCS7B01G408600 chr7D 606302894 606305000 2106 False 1188.000000 1188 77.440000 1755 3873 1 chr7D.!!$F3 2118
15 TraesCS7B01G408600 chr7D 605947105 605948140 1035 False 582.000000 582 77.994000 721 1736 1 chr7D.!!$F2 1015
16 TraesCS7B01G408600 chr4B 12754961 12757106 2145 False 2734.000000 2734 89.625000 1745 3902 1 chr4B.!!$F2 2157
17 TraesCS7B01G408600 chr4B 12748167 12749198 1031 False 1365.000000 1365 90.531000 1820 2853 1 chr4B.!!$F1 1033
18 TraesCS7B01G408600 chrUn 33118458 33119270 812 False 643.000000 643 81.598000 936 1731 1 chrUn.!!$F1 795
19 TraesCS7B01G408600 chrUn 92705242 92706443 1201 True 636.000000 636 76.799000 2692 3900 1 chrUn.!!$R1 1208
20 TraesCS7B01G408600 chr3A 704694919 704695733 814 True 601.000000 601 80.700000 936 1731 1 chr3A.!!$R2 795
21 TraesCS7B01G408600 chr3A 704780797 704781610 813 True 601.000000 601 80.700000 936 1731 1 chr3A.!!$R3 795
22 TraesCS7B01G408600 chr3A 704840740 704841554 814 True 584.000000 584 80.385000 936 1731 1 chr3A.!!$R4 795
23 TraesCS7B01G408600 chr3A 704571254 704572069 815 False 580.000000 580 80.312000 936 1732 1 chr3A.!!$F1 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 245 0.031414 ACGGCTAGATAAGGGGGTGT 60.031 55.0 0.00 0.00 0.00 4.16 F
475 476 0.108089 GGTTCTCCGCCCTCTCTTTC 60.108 60.0 0.00 0.00 0.00 2.62 F
596 597 0.322546 AAGAGAAACCATGGGCCGAC 60.323 55.0 18.09 4.57 0.00 4.79 F
1273 1341 0.548031 ACGGTGATGGATGCCAAGAT 59.452 50.0 0.00 0.00 36.95 2.40 F
1393 1461 1.470996 GGCCTCGAGATGGATCTGCT 61.471 60.0 15.71 0.00 37.25 4.24 F
1687 1805 1.806461 GCTCGATCGGATGGCCACTA 61.806 60.0 8.16 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1301 1369 0.112606 TGACCAGGTCGAACTCCTCT 59.887 55.000 15.24 0.0 34.95 3.69 R
1687 1805 1.918800 ACCTCCGCTTTGCTACCCT 60.919 57.895 0.00 0.0 0.00 4.34 R
2476 3176 7.331026 TGTTCCAACTAGGTAAATCAGATCAG 58.669 38.462 0.00 0.0 39.02 2.90 R
2817 3548 3.370103 GGTTTATCCCCTTCATCACGACA 60.370 47.826 0.00 0.0 0.00 4.35 R
2899 3630 5.510430 TCTTCTCCTACTCTCAACATGCTA 58.490 41.667 0.00 0.0 0.00 3.49 R
3301 4032 6.448006 ACCTGTAGATGACTCGCAATATTAC 58.552 40.000 0.00 0.0 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 139 7.421530 TTCTAGTAAGAATGTTCTGTTGTGC 57.578 36.000 0.00 0.00 36.80 4.57
139 140 6.759272 TCTAGTAAGAATGTTCTGTTGTGCT 58.241 36.000 0.00 0.00 37.65 4.40
140 141 5.679734 AGTAAGAATGTTCTGTTGTGCTG 57.320 39.130 0.00 0.00 37.65 4.41
141 142 5.368145 AGTAAGAATGTTCTGTTGTGCTGA 58.632 37.500 0.00 0.00 37.65 4.26
142 143 5.822519 AGTAAGAATGTTCTGTTGTGCTGAA 59.177 36.000 0.00 0.00 37.65 3.02
143 144 5.581126 AAGAATGTTCTGTTGTGCTGAAA 57.419 34.783 0.00 0.00 37.65 2.69
144 145 5.581126 AGAATGTTCTGTTGTGCTGAAAA 57.419 34.783 0.00 0.00 36.91 2.29
145 146 5.964758 AGAATGTTCTGTTGTGCTGAAAAA 58.035 33.333 0.00 0.00 36.91 1.94
146 147 6.038356 AGAATGTTCTGTTGTGCTGAAAAAG 58.962 36.000 0.00 0.00 36.91 2.27
147 148 4.782019 TGTTCTGTTGTGCTGAAAAAGT 57.218 36.364 0.00 0.00 36.91 2.66
148 149 5.888691 TGTTCTGTTGTGCTGAAAAAGTA 57.111 34.783 0.00 0.00 36.91 2.24
149 150 6.449635 TGTTCTGTTGTGCTGAAAAAGTAT 57.550 33.333 0.00 0.00 36.91 2.12
150 151 6.264832 TGTTCTGTTGTGCTGAAAAAGTATG 58.735 36.000 0.00 0.00 36.91 2.39
151 152 6.094742 TGTTCTGTTGTGCTGAAAAAGTATGA 59.905 34.615 0.00 0.00 36.91 2.15
152 153 6.691754 TCTGTTGTGCTGAAAAAGTATGAA 57.308 33.333 0.00 0.00 0.00 2.57
153 154 6.728200 TCTGTTGTGCTGAAAAAGTATGAAG 58.272 36.000 0.00 0.00 0.00 3.02
154 155 6.318648 TCTGTTGTGCTGAAAAAGTATGAAGT 59.681 34.615 0.00 0.00 0.00 3.01
155 156 6.862209 TGTTGTGCTGAAAAAGTATGAAGTT 58.138 32.000 0.00 0.00 0.00 2.66
156 157 6.972328 TGTTGTGCTGAAAAAGTATGAAGTTC 59.028 34.615 0.00 0.00 0.00 3.01
157 158 6.691754 TGTGCTGAAAAAGTATGAAGTTCA 57.308 33.333 8.27 8.27 0.00 3.18
158 159 7.275888 TGTGCTGAAAAAGTATGAAGTTCAT 57.724 32.000 21.57 21.57 40.72 2.57
159 160 8.389779 TGTGCTGAAAAAGTATGAAGTTCATA 57.610 30.769 19.51 19.51 38.26 2.15
160 161 9.013229 TGTGCTGAAAAAGTATGAAGTTCATAT 57.987 29.630 24.67 11.35 40.97 1.78
161 162 9.282247 GTGCTGAAAAAGTATGAAGTTCATATG 57.718 33.333 24.67 11.09 40.97 1.78
162 163 9.013229 TGCTGAAAAAGTATGAAGTTCATATGT 57.987 29.630 24.67 14.55 40.97 2.29
163 164 9.846248 GCTGAAAAAGTATGAAGTTCATATGTT 57.154 29.630 24.67 18.59 40.97 2.71
196 197 7.611213 TGAGAGAAACGAAAAAGAGAAAAGT 57.389 32.000 0.00 0.00 0.00 2.66
197 198 8.712285 TGAGAGAAACGAAAAAGAGAAAAGTA 57.288 30.769 0.00 0.00 0.00 2.24
198 199 8.601476 TGAGAGAAACGAAAAAGAGAAAAGTAC 58.399 33.333 0.00 0.00 0.00 2.73
199 200 8.719560 AGAGAAACGAAAAAGAGAAAAGTACT 57.280 30.769 0.00 0.00 0.00 2.73
200 201 9.163899 AGAGAAACGAAAAAGAGAAAAGTACTT 57.836 29.630 1.12 1.12 0.00 2.24
201 202 9.211556 GAGAAACGAAAAAGAGAAAAGTACTTG 57.788 33.333 9.34 0.00 0.00 3.16
202 203 7.696872 AGAAACGAAAAAGAGAAAAGTACTTGC 59.303 33.333 9.34 4.76 0.00 4.01
203 204 6.431198 ACGAAAAAGAGAAAAGTACTTGCA 57.569 33.333 9.34 0.00 0.00 4.08
204 205 6.255950 ACGAAAAAGAGAAAAGTACTTGCAC 58.744 36.000 9.34 3.67 0.00 4.57
205 206 5.392585 CGAAAAAGAGAAAAGTACTTGCACG 59.607 40.000 9.34 0.00 0.00 5.34
206 207 6.431198 AAAAAGAGAAAAGTACTTGCACGA 57.569 33.333 9.34 0.00 0.00 4.35
207 208 6.431198 AAAAGAGAAAAGTACTTGCACGAA 57.569 33.333 9.34 0.00 0.00 3.85
208 209 6.619801 AAAGAGAAAAGTACTTGCACGAAT 57.380 33.333 9.34 0.00 0.00 3.34
209 210 5.847670 AGAGAAAAGTACTTGCACGAATC 57.152 39.130 9.34 1.57 0.00 2.52
210 211 4.386049 AGAGAAAAGTACTTGCACGAATCG 59.614 41.667 9.34 0.00 0.00 3.34
211 212 2.875080 AAAGTACTTGCACGAATCGC 57.125 45.000 9.34 0.00 0.00 4.58
213 214 0.109458 AGTACTTGCACGAATCGCGA 60.109 50.000 13.09 13.09 44.57 5.87
214 215 0.921347 GTACTTGCACGAATCGCGAT 59.079 50.000 17.62 17.62 44.57 4.58
215 216 0.920664 TACTTGCACGAATCGCGATG 59.079 50.000 24.47 13.82 44.57 3.84
216 217 1.649348 CTTGCACGAATCGCGATGC 60.649 57.895 24.47 23.10 44.57 3.91
217 218 2.295394 CTTGCACGAATCGCGATGCA 62.295 55.000 26.30 26.30 46.89 3.96
218 219 2.053638 GCACGAATCGCGATGCAG 60.054 61.111 26.24 19.87 44.57 4.41
219 220 2.516589 GCACGAATCGCGATGCAGA 61.517 57.895 26.24 0.00 44.57 4.26
220 221 1.998285 CACGAATCGCGATGCAGAA 59.002 52.632 26.24 0.00 44.57 3.02
221 222 0.578683 CACGAATCGCGATGCAGAAT 59.421 50.000 26.24 8.22 44.57 2.40
222 223 1.004610 CACGAATCGCGATGCAGAATT 60.005 47.619 26.24 8.28 44.57 2.17
223 224 1.004610 ACGAATCGCGATGCAGAATTG 60.005 47.619 26.24 13.96 44.57 2.32
224 225 1.258720 CGAATCGCGATGCAGAATTGA 59.741 47.619 26.24 0.00 44.57 2.57
225 226 2.285776 CGAATCGCGATGCAGAATTGAA 60.286 45.455 26.24 0.00 44.57 2.69
226 227 2.744787 ATCGCGATGCAGAATTGAAC 57.255 45.000 23.04 0.00 0.00 3.18
227 228 0.369931 TCGCGATGCAGAATTGAACG 59.630 50.000 3.71 0.00 0.00 3.95
228 229 0.587242 CGCGATGCAGAATTGAACGG 60.587 55.000 0.00 0.00 0.00 4.44
229 230 0.863119 GCGATGCAGAATTGAACGGC 60.863 55.000 0.00 0.00 0.00 5.68
230 231 0.729116 CGATGCAGAATTGAACGGCT 59.271 50.000 0.00 0.00 0.00 5.52
231 232 1.933181 CGATGCAGAATTGAACGGCTA 59.067 47.619 0.00 0.00 0.00 3.93
232 233 2.033407 CGATGCAGAATTGAACGGCTAG 60.033 50.000 0.00 0.00 0.00 3.42
233 234 2.760634 TGCAGAATTGAACGGCTAGA 57.239 45.000 0.00 0.00 0.00 2.43
234 235 3.266510 TGCAGAATTGAACGGCTAGAT 57.733 42.857 0.00 0.00 0.00 1.98
235 236 4.400529 TGCAGAATTGAACGGCTAGATA 57.599 40.909 0.00 0.00 0.00 1.98
236 237 4.765273 TGCAGAATTGAACGGCTAGATAA 58.235 39.130 0.00 0.00 0.00 1.75
237 238 4.811024 TGCAGAATTGAACGGCTAGATAAG 59.189 41.667 0.00 0.00 0.00 1.73
238 239 4.212214 GCAGAATTGAACGGCTAGATAAGG 59.788 45.833 0.00 0.00 0.00 2.69
239 240 4.752101 CAGAATTGAACGGCTAGATAAGGG 59.248 45.833 0.00 0.00 0.00 3.95
240 241 3.771577 ATTGAACGGCTAGATAAGGGG 57.228 47.619 0.00 0.00 0.00 4.79
241 242 1.420430 TGAACGGCTAGATAAGGGGG 58.580 55.000 0.00 0.00 0.00 5.40
242 243 1.343681 TGAACGGCTAGATAAGGGGGT 60.344 52.381 0.00 0.00 0.00 4.95
243 244 1.070289 GAACGGCTAGATAAGGGGGTG 59.930 57.143 0.00 0.00 0.00 4.61
244 245 0.031414 ACGGCTAGATAAGGGGGTGT 60.031 55.000 0.00 0.00 0.00 4.16
245 246 0.680061 CGGCTAGATAAGGGGGTGTC 59.320 60.000 0.00 0.00 0.00 3.67
246 247 1.057471 GGCTAGATAAGGGGGTGTCC 58.943 60.000 0.00 0.00 0.00 4.02
247 248 1.694693 GGCTAGATAAGGGGGTGTCCA 60.695 57.143 0.00 0.00 37.22 4.02
248 249 2.339769 GCTAGATAAGGGGGTGTCCAT 58.660 52.381 0.00 0.00 37.22 3.41
249 250 2.039084 GCTAGATAAGGGGGTGTCCATG 59.961 54.545 0.00 0.00 37.22 3.66
250 251 2.587060 AGATAAGGGGGTGTCCATGA 57.413 50.000 0.00 0.00 37.22 3.07
251 252 2.412591 AGATAAGGGGGTGTCCATGAG 58.587 52.381 0.00 0.00 37.22 2.90
252 253 0.846693 ATAAGGGGGTGTCCATGAGC 59.153 55.000 0.00 0.00 37.22 4.26
253 254 1.279025 TAAGGGGGTGTCCATGAGCC 61.279 60.000 0.00 0.00 37.22 4.70
254 255 3.017581 GGGGGTGTCCATGAGCCT 61.018 66.667 0.00 0.00 37.22 4.58
255 256 1.692749 GGGGGTGTCCATGAGCCTA 60.693 63.158 0.00 0.00 37.22 3.93
256 257 1.279025 GGGGGTGTCCATGAGCCTAA 61.279 60.000 0.00 0.00 37.22 2.69
257 258 0.181350 GGGGTGTCCATGAGCCTAAG 59.819 60.000 0.00 0.00 35.00 2.18
258 259 0.464554 GGGTGTCCATGAGCCTAAGC 60.465 60.000 0.00 0.00 40.32 3.09
274 275 6.993786 GCCTAAGCTCCATAGGATATTTTC 57.006 41.667 13.24 0.00 42.16 2.29
275 276 5.883115 GCCTAAGCTCCATAGGATATTTTCC 59.117 44.000 13.24 0.00 42.16 3.13
276 277 7.347698 GCCTAAGCTCCATAGGATATTTTCCG 61.348 46.154 13.24 0.00 42.16 4.30
277 278 9.416332 GCCTAAGCTCCATAGGATATTTTCCGA 62.416 44.444 13.24 0.00 42.16 4.55
286 287 4.197107 GGATATTTTCCGAGCGAAACTG 57.803 45.455 0.00 0.00 40.23 3.16
287 288 3.546218 GGATATTTTCCGAGCGAAACTGC 60.546 47.826 0.00 0.00 40.23 4.40
288 289 5.740809 GGATATTTTCCGAGCGAAACTGCT 61.741 45.833 0.00 0.00 40.23 4.24
289 290 7.691730 GGATATTTTCCGAGCGAAACTGCTG 62.692 48.000 0.00 0.00 40.23 4.41
294 295 3.034030 AGCGAAACTGCTGGTTGC 58.966 55.556 0.00 3.29 45.28 4.17
295 296 2.050077 GCGAAACTGCTGGTTGCC 60.050 61.111 0.00 0.00 42.00 4.52
296 297 2.844451 GCGAAACTGCTGGTTGCCA 61.844 57.895 0.00 0.00 42.00 4.92
333 334 2.843669 GGCGAACGATGTTAACCCA 58.156 52.632 2.48 0.00 0.00 4.51
334 335 1.158434 GGCGAACGATGTTAACCCAA 58.842 50.000 2.48 0.00 0.00 4.12
335 336 1.741145 GGCGAACGATGTTAACCCAAT 59.259 47.619 2.48 0.00 0.00 3.16
336 337 2.477189 GGCGAACGATGTTAACCCAATG 60.477 50.000 2.48 0.00 0.00 2.82
337 338 2.477189 GCGAACGATGTTAACCCAATGG 60.477 50.000 2.48 0.00 37.80 3.16
338 339 2.477189 CGAACGATGTTAACCCAATGGC 60.477 50.000 2.48 0.00 33.59 4.40
339 340 2.208132 ACGATGTTAACCCAATGGCA 57.792 45.000 2.48 0.00 33.59 4.92
340 341 2.520069 ACGATGTTAACCCAATGGCAA 58.480 42.857 2.48 0.00 33.59 4.52
341 342 3.096092 ACGATGTTAACCCAATGGCAAT 58.904 40.909 2.48 0.00 33.59 3.56
342 343 3.119173 ACGATGTTAACCCAATGGCAATG 60.119 43.478 2.48 0.00 33.59 2.82
343 344 3.737663 CGATGTTAACCCAATGGCAATGG 60.738 47.826 14.87 14.87 37.71 3.16
344 345 2.614259 TGTTAACCCAATGGCAATGGT 58.386 42.857 19.80 10.20 36.14 3.55
345 346 2.975489 TGTTAACCCAATGGCAATGGTT 59.025 40.909 19.80 19.11 43.28 3.67
346 347 3.244353 TGTTAACCCAATGGCAATGGTTG 60.244 43.478 19.80 8.42 41.08 3.77
347 348 0.691904 AACCCAATGGCAATGGTTGG 59.308 50.000 19.80 14.75 39.54 3.77
348 349 0.473501 ACCCAATGGCAATGGTTGGT 60.474 50.000 19.80 8.35 40.57 3.67
349 350 1.203237 ACCCAATGGCAATGGTTGGTA 60.203 47.619 19.80 0.00 40.57 3.25
350 351 1.905215 CCCAATGGCAATGGTTGGTAA 59.095 47.619 19.80 0.00 40.57 2.85
351 352 2.304180 CCCAATGGCAATGGTTGGTAAA 59.696 45.455 19.80 0.00 40.57 2.01
352 353 3.054508 CCCAATGGCAATGGTTGGTAAAT 60.055 43.478 19.80 0.00 40.57 1.40
353 354 4.163078 CCCAATGGCAATGGTTGGTAAATA 59.837 41.667 19.80 0.00 40.57 1.40
354 355 5.338708 CCCAATGGCAATGGTTGGTAAATAA 60.339 40.000 19.80 0.00 40.57 1.40
355 356 6.355747 CCAATGGCAATGGTTGGTAAATAAT 58.644 36.000 13.62 0.00 38.03 1.28
356 357 6.827762 CCAATGGCAATGGTTGGTAAATAATT 59.172 34.615 13.62 0.00 38.03 1.40
357 358 7.989741 CCAATGGCAATGGTTGGTAAATAATTA 59.010 33.333 13.62 0.00 38.03 1.40
358 359 9.388506 CAATGGCAATGGTTGGTAAATAATTAA 57.611 29.630 0.00 0.00 0.00 1.40
359 360 9.612066 AATGGCAATGGTTGGTAAATAATTAAG 57.388 29.630 0.00 0.00 0.00 1.85
360 361 8.140112 TGGCAATGGTTGGTAAATAATTAAGT 57.860 30.769 0.00 0.00 0.00 2.24
361 362 9.256228 TGGCAATGGTTGGTAAATAATTAAGTA 57.744 29.630 0.00 0.00 0.00 2.24
367 368 9.256228 TGGTTGGTAAATAATTAAGTAATGGCA 57.744 29.630 0.00 0.00 0.00 4.92
375 376 5.612725 AATTAAGTAATGGCATTGGTGGG 57.387 39.130 22.57 0.00 0.00 4.61
376 377 2.621556 AAGTAATGGCATTGGTGGGT 57.378 45.000 22.57 0.00 0.00 4.51
377 378 3.748645 AAGTAATGGCATTGGTGGGTA 57.251 42.857 22.57 0.00 0.00 3.69
378 379 3.748645 AGTAATGGCATTGGTGGGTAA 57.251 42.857 22.57 0.00 0.00 2.85
379 380 4.264373 AGTAATGGCATTGGTGGGTAAT 57.736 40.909 22.57 0.00 0.00 1.89
380 381 4.619679 AGTAATGGCATTGGTGGGTAATT 58.380 39.130 22.57 0.00 0.00 1.40
381 382 5.772004 AGTAATGGCATTGGTGGGTAATTA 58.228 37.500 22.57 0.00 0.00 1.40
382 383 6.198639 AGTAATGGCATTGGTGGGTAATTAA 58.801 36.000 22.57 0.00 0.00 1.40
383 384 6.670027 AGTAATGGCATTGGTGGGTAATTAAA 59.330 34.615 22.57 0.00 0.00 1.52
384 385 6.380079 AATGGCATTGGTGGGTAATTAAAA 57.620 33.333 12.82 0.00 0.00 1.52
385 386 5.153950 TGGCATTGGTGGGTAATTAAAAC 57.846 39.130 0.00 0.00 0.00 2.43
386 387 4.177783 GGCATTGGTGGGTAATTAAAACG 58.822 43.478 0.00 0.00 0.00 3.60
387 388 4.322123 GGCATTGGTGGGTAATTAAAACGT 60.322 41.667 0.00 0.00 0.00 3.99
388 389 5.105837 GGCATTGGTGGGTAATTAAAACGTA 60.106 40.000 0.00 0.00 0.00 3.57
389 390 6.388278 GCATTGGTGGGTAATTAAAACGTAA 58.612 36.000 0.00 0.00 0.00 3.18
390 391 6.867293 GCATTGGTGGGTAATTAAAACGTAAA 59.133 34.615 0.00 0.00 0.00 2.01
391 392 7.384387 GCATTGGTGGGTAATTAAAACGTAAAA 59.616 33.333 0.00 0.00 0.00 1.52
392 393 9.425577 CATTGGTGGGTAATTAAAACGTAAAAT 57.574 29.630 0.00 0.00 0.00 1.82
393 394 8.813643 TTGGTGGGTAATTAAAACGTAAAATG 57.186 30.769 0.00 0.00 0.00 2.32
394 395 6.867293 TGGTGGGTAATTAAAACGTAAAATGC 59.133 34.615 0.00 0.00 0.00 3.56
395 396 6.033725 GGTGGGTAATTAAAACGTAAAATGCG 59.966 38.462 0.00 0.00 0.00 4.73
396 397 6.581919 GTGGGTAATTAAAACGTAAAATGCGT 59.418 34.615 0.00 0.00 45.07 5.24
406 407 5.789710 ACGTAAAATGCGTTTAGTATGCT 57.210 34.783 3.90 0.00 39.79 3.79
407 408 5.556470 ACGTAAAATGCGTTTAGTATGCTG 58.444 37.500 3.90 0.00 39.79 4.41
408 409 5.349270 ACGTAAAATGCGTTTAGTATGCTGA 59.651 36.000 3.90 0.00 39.79 4.26
409 410 6.128499 ACGTAAAATGCGTTTAGTATGCTGAA 60.128 34.615 3.90 0.00 39.79 3.02
410 411 6.408039 CGTAAAATGCGTTTAGTATGCTGAAG 59.592 38.462 3.90 0.00 39.61 3.02
411 412 4.882671 AATGCGTTTAGTATGCTGAAGG 57.117 40.909 4.08 4.08 39.61 3.46
412 413 2.627945 TGCGTTTAGTATGCTGAAGGG 58.372 47.619 9.42 0.00 39.61 3.95
413 414 2.235155 TGCGTTTAGTATGCTGAAGGGA 59.765 45.455 9.42 4.52 39.61 4.20
414 415 3.118408 TGCGTTTAGTATGCTGAAGGGAT 60.118 43.478 9.42 0.00 39.61 3.85
415 416 3.248602 GCGTTTAGTATGCTGAAGGGATG 59.751 47.826 9.42 0.00 35.80 3.51
416 417 4.442706 CGTTTAGTATGCTGAAGGGATGT 58.557 43.478 0.00 0.00 0.00 3.06
417 418 5.597806 CGTTTAGTATGCTGAAGGGATGTA 58.402 41.667 0.00 0.00 0.00 2.29
418 419 5.692204 CGTTTAGTATGCTGAAGGGATGTAG 59.308 44.000 0.00 0.00 0.00 2.74
419 420 6.461092 CGTTTAGTATGCTGAAGGGATGTAGA 60.461 42.308 0.00 0.00 0.00 2.59
420 421 4.946478 AGTATGCTGAAGGGATGTAGAC 57.054 45.455 0.00 0.00 0.00 2.59
421 422 3.643792 AGTATGCTGAAGGGATGTAGACC 59.356 47.826 0.00 0.00 0.00 3.85
422 423 1.951209 TGCTGAAGGGATGTAGACCA 58.049 50.000 0.00 0.00 0.00 4.02
423 424 2.481441 TGCTGAAGGGATGTAGACCAT 58.519 47.619 0.00 0.00 36.13 3.55
439 440 8.722480 TGTAGACCATCAGATTGTAGATTTTG 57.278 34.615 0.00 0.00 0.00 2.44
440 441 8.539544 TGTAGACCATCAGATTGTAGATTTTGA 58.460 33.333 0.00 0.00 0.00 2.69
441 442 9.553064 GTAGACCATCAGATTGTAGATTTTGAT 57.447 33.333 0.00 0.00 0.00 2.57
442 443 8.447924 AGACCATCAGATTGTAGATTTTGATG 57.552 34.615 7.79 7.79 40.78 3.07
448 449 9.736414 ATCAGATTGTAGATTTTGATGGATAGG 57.264 33.333 0.00 0.00 0.00 2.57
449 450 8.937835 TCAGATTGTAGATTTTGATGGATAGGA 58.062 33.333 0.00 0.00 0.00 2.94
450 451 9.736414 CAGATTGTAGATTTTGATGGATAGGAT 57.264 33.333 0.00 0.00 0.00 3.24
451 452 9.736414 AGATTGTAGATTTTGATGGATAGGATG 57.264 33.333 0.00 0.00 0.00 3.51
452 453 9.730705 GATTGTAGATTTTGATGGATAGGATGA 57.269 33.333 0.00 0.00 0.00 2.92
454 455 9.730705 TTGTAGATTTTGATGGATAGGATGATC 57.269 33.333 0.00 0.00 0.00 2.92
455 456 9.109246 TGTAGATTTTGATGGATAGGATGATCT 57.891 33.333 0.00 0.00 0.00 2.75
456 457 9.381033 GTAGATTTTGATGGATAGGATGATCTG 57.619 37.037 0.00 0.00 0.00 2.90
457 458 7.403671 AGATTTTGATGGATAGGATGATCTGG 58.596 38.462 0.00 0.00 0.00 3.86
458 459 6.520021 TTTTGATGGATAGGATGATCTGGT 57.480 37.500 0.00 0.00 0.00 4.00
459 460 6.520021 TTTGATGGATAGGATGATCTGGTT 57.480 37.500 0.00 0.00 0.00 3.67
460 461 5.752036 TGATGGATAGGATGATCTGGTTC 57.248 43.478 0.00 0.00 0.00 3.62
461 462 5.409712 TGATGGATAGGATGATCTGGTTCT 58.590 41.667 0.00 0.00 0.00 3.01
462 463 5.483231 TGATGGATAGGATGATCTGGTTCTC 59.517 44.000 0.00 0.00 0.00 2.87
463 464 4.163427 TGGATAGGATGATCTGGTTCTCC 58.837 47.826 0.00 0.00 0.00 3.71
464 465 3.194542 GGATAGGATGATCTGGTTCTCCG 59.805 52.174 0.00 0.00 36.30 4.63
465 466 0.755686 AGGATGATCTGGTTCTCCGC 59.244 55.000 0.00 0.00 36.30 5.54
466 467 0.250081 GGATGATCTGGTTCTCCGCC 60.250 60.000 0.00 0.00 36.30 6.13
467 468 0.250081 GATGATCTGGTTCTCCGCCC 60.250 60.000 0.00 0.00 36.30 6.13
468 469 0.692419 ATGATCTGGTTCTCCGCCCT 60.692 55.000 0.00 0.00 36.30 5.19
469 470 1.330655 TGATCTGGTTCTCCGCCCTC 61.331 60.000 0.00 0.00 36.30 4.30
470 471 1.002274 ATCTGGTTCTCCGCCCTCT 59.998 57.895 0.00 0.00 36.30 3.69
471 472 1.045911 ATCTGGTTCTCCGCCCTCTC 61.046 60.000 0.00 0.00 36.30 3.20
472 473 1.684049 CTGGTTCTCCGCCCTCTCT 60.684 63.158 0.00 0.00 36.30 3.10
473 474 1.229209 TGGTTCTCCGCCCTCTCTT 60.229 57.895 0.00 0.00 36.30 2.85
474 475 0.836400 TGGTTCTCCGCCCTCTCTTT 60.836 55.000 0.00 0.00 36.30 2.52
475 476 0.108089 GGTTCTCCGCCCTCTCTTTC 60.108 60.000 0.00 0.00 0.00 2.62
476 477 0.899019 GTTCTCCGCCCTCTCTTTCT 59.101 55.000 0.00 0.00 0.00 2.52
477 478 1.276705 GTTCTCCGCCCTCTCTTTCTT 59.723 52.381 0.00 0.00 0.00 2.52
478 479 1.645710 TCTCCGCCCTCTCTTTCTTT 58.354 50.000 0.00 0.00 0.00 2.52
479 480 1.978580 TCTCCGCCCTCTCTTTCTTTT 59.021 47.619 0.00 0.00 0.00 2.27
480 481 3.170717 TCTCCGCCCTCTCTTTCTTTTA 58.829 45.455 0.00 0.00 0.00 1.52
481 482 3.775316 TCTCCGCCCTCTCTTTCTTTTAT 59.225 43.478 0.00 0.00 0.00 1.40
482 483 4.960469 TCTCCGCCCTCTCTTTCTTTTATA 59.040 41.667 0.00 0.00 0.00 0.98
483 484 5.069251 TCTCCGCCCTCTCTTTCTTTTATAG 59.931 44.000 0.00 0.00 0.00 1.31
484 485 4.715297 TCCGCCCTCTCTTTCTTTTATAGT 59.285 41.667 0.00 0.00 0.00 2.12
485 486 4.811557 CCGCCCTCTCTTTCTTTTATAGTG 59.188 45.833 0.00 0.00 0.00 2.74
486 487 4.811557 CGCCCTCTCTTTCTTTTATAGTGG 59.188 45.833 0.00 0.00 0.00 4.00
487 488 5.627040 CGCCCTCTCTTTCTTTTATAGTGGT 60.627 44.000 0.00 0.00 0.00 4.16
488 489 6.406624 CGCCCTCTCTTTCTTTTATAGTGGTA 60.407 42.308 0.00 0.00 0.00 3.25
489 490 6.987404 GCCCTCTCTTTCTTTTATAGTGGTAG 59.013 42.308 0.00 0.00 0.00 3.18
490 491 7.364851 GCCCTCTCTTTCTTTTATAGTGGTAGT 60.365 40.741 0.00 0.00 0.00 2.73
491 492 9.198475 CCCTCTCTTTCTTTTATAGTGGTAGTA 57.802 37.037 0.00 0.00 0.00 1.82
542 543 5.691754 GCTCGAAAATTTGGTGAGAAAACAT 59.308 36.000 15.10 0.00 0.00 2.71
550 551 5.850557 TTGGTGAGAAAACATCAACACAT 57.149 34.783 0.00 0.00 43.83 3.21
574 575 2.147150 GTGGTTTTGCTCTCCTCTCAC 58.853 52.381 0.00 0.00 0.00 3.51
582 583 1.680555 GCTCTCCTCTCACGGAAGAGA 60.681 57.143 15.60 10.24 44.67 3.10
596 597 0.322546 AAGAGAAACCATGGGCCGAC 60.323 55.000 18.09 4.57 0.00 4.79
655 656 7.921786 ACAAATGCAGTAGCTACAGAAATTA 57.078 32.000 25.28 5.24 42.74 1.40
656 657 8.511604 ACAAATGCAGTAGCTACAGAAATTAT 57.488 30.769 25.28 0.00 42.74 1.28
657 658 9.613428 ACAAATGCAGTAGCTACAGAAATTATA 57.387 29.630 25.28 2.27 42.74 0.98
660 661 9.482627 AATGCAGTAGCTACAGAAATTATAGAC 57.517 33.333 25.28 2.01 42.74 2.59
661 662 8.007405 TGCAGTAGCTACAGAAATTATAGACA 57.993 34.615 25.28 4.50 42.74 3.41
662 663 7.921214 TGCAGTAGCTACAGAAATTATAGACAC 59.079 37.037 25.28 1.34 42.74 3.67
663 664 7.921214 GCAGTAGCTACAGAAATTATAGACACA 59.079 37.037 25.28 0.00 37.91 3.72
664 665 9.973450 CAGTAGCTACAGAAATTATAGACACAT 57.027 33.333 25.28 0.00 0.00 3.21
666 667 9.119329 GTAGCTACAGAAATTATAGACACATCG 57.881 37.037 19.15 0.00 0.00 3.84
667 668 6.642950 AGCTACAGAAATTATAGACACATCGC 59.357 38.462 0.00 0.00 0.00 4.58
668 669 6.128795 GCTACAGAAATTATAGACACATCGCC 60.129 42.308 0.00 0.00 0.00 5.54
669 670 5.670485 ACAGAAATTATAGACACATCGCCA 58.330 37.500 0.00 0.00 0.00 5.69
670 671 6.112734 ACAGAAATTATAGACACATCGCCAA 58.887 36.000 0.00 0.00 0.00 4.52
671 672 6.597672 ACAGAAATTATAGACACATCGCCAAA 59.402 34.615 0.00 0.00 0.00 3.28
672 673 7.120579 ACAGAAATTATAGACACATCGCCAAAA 59.879 33.333 0.00 0.00 0.00 2.44
673 674 7.429340 CAGAAATTATAGACACATCGCCAAAAC 59.571 37.037 0.00 0.00 0.00 2.43
674 675 6.751514 AATTATAGACACATCGCCAAAACA 57.248 33.333 0.00 0.00 0.00 2.83
675 676 6.751514 ATTATAGACACATCGCCAAAACAA 57.248 33.333 0.00 0.00 0.00 2.83
676 677 6.561737 TTATAGACACATCGCCAAAACAAA 57.438 33.333 0.00 0.00 0.00 2.83
677 678 5.643379 ATAGACACATCGCCAAAACAAAT 57.357 34.783 0.00 0.00 0.00 2.32
678 679 3.641648 AGACACATCGCCAAAACAAATG 58.358 40.909 0.00 0.00 0.00 2.32
679 680 2.134346 ACACATCGCCAAAACAAATGC 58.866 42.857 0.00 0.00 0.00 3.56
680 681 2.133553 CACATCGCCAAAACAAATGCA 58.866 42.857 0.00 0.00 0.00 3.96
681 682 2.156117 CACATCGCCAAAACAAATGCAG 59.844 45.455 0.00 0.00 0.00 4.41
682 683 2.224018 ACATCGCCAAAACAAATGCAGT 60.224 40.909 0.00 0.00 0.00 4.40
683 684 3.005261 ACATCGCCAAAACAAATGCAGTA 59.995 39.130 0.00 0.00 0.00 2.74
684 685 3.281341 TCGCCAAAACAAATGCAGTAG 57.719 42.857 0.00 0.00 0.00 2.57
685 686 1.720852 CGCCAAAACAAATGCAGTAGC 59.279 47.619 0.00 0.00 42.57 3.58
686 687 2.607771 CGCCAAAACAAATGCAGTAGCT 60.608 45.455 0.00 0.00 42.74 3.32
687 688 3.365868 CGCCAAAACAAATGCAGTAGCTA 60.366 43.478 0.00 0.00 42.74 3.32
688 689 3.920412 GCCAAAACAAATGCAGTAGCTAC 59.080 43.478 16.43 16.43 42.74 3.58
689 690 4.558496 GCCAAAACAAATGCAGTAGCTACA 60.558 41.667 25.28 5.81 42.74 2.74
690 691 5.156355 CCAAAACAAATGCAGTAGCTACAG 58.844 41.667 25.28 18.58 42.74 2.74
691 692 5.048782 CCAAAACAAATGCAGTAGCTACAGA 60.049 40.000 25.28 9.10 42.74 3.41
692 693 6.437928 CAAAACAAATGCAGTAGCTACAGAA 58.562 36.000 25.28 13.18 42.74 3.02
693 694 6.633500 AAACAAATGCAGTAGCTACAGAAA 57.367 33.333 25.28 10.16 42.74 2.52
694 695 6.824305 AACAAATGCAGTAGCTACAGAAAT 57.176 33.333 25.28 11.90 42.74 2.17
695 696 6.824305 ACAAATGCAGTAGCTACAGAAATT 57.176 33.333 25.28 16.48 42.74 1.82
803 816 1.002888 CATCTCACCACTGCAGTCCTT 59.997 52.381 18.64 0.22 0.00 3.36
956 1012 7.714813 CCCCATTGTTTCTTAATCAGTGTTTTT 59.285 33.333 0.00 0.00 0.00 1.94
1210 1277 3.031013 TCAGAATCGGAGCCTTGTGATA 58.969 45.455 0.00 0.00 0.00 2.15
1273 1341 0.548031 ACGGTGATGGATGCCAAGAT 59.452 50.000 0.00 0.00 36.95 2.40
1301 1369 1.500474 AGATGCTCAGATCGGGGAAA 58.500 50.000 0.00 0.00 0.00 3.13
1393 1461 1.470996 GGCCTCGAGATGGATCTGCT 61.471 60.000 15.71 0.00 37.25 4.24
1423 1500 6.243148 TCAGTATACACTCACTACTCAACCA 58.757 40.000 5.50 0.00 30.46 3.67
1687 1805 1.806461 GCTCGATCGGATGGCCACTA 61.806 60.000 8.16 0.00 0.00 2.74
1760 2438 7.027778 CAGGATCCATCATGCATACAATATG 57.972 40.000 15.82 0.00 31.52 1.78
2476 3176 4.022416 TGGTTCACCAATAGTTTGATGTGC 60.022 41.667 0.00 0.00 44.35 4.57
2541 3242 9.471084 GTTTAGGCATTGTGTTACAGTTATTTT 57.529 29.630 0.00 0.00 0.00 1.82
2687 3410 5.390461 CGACACATTTGGAAAATAGCGAAGA 60.390 40.000 0.00 0.00 0.00 2.87
2729 3453 4.788100 CACTCGGACAAAAATTTATGCTCG 59.212 41.667 0.00 0.00 0.00 5.03
2808 3539 1.945394 GCAGTGCTATCAGTGGATTGG 59.055 52.381 8.18 0.00 42.51 3.16
2899 3630 4.082787 CCAACGAGCTCAAAAACATATGGT 60.083 41.667 15.40 0.00 0.00 3.55
3301 4032 4.920640 ATGTGGATTACCTCACTAGACG 57.079 45.455 0.00 0.00 41.50 4.18
3620 4367 1.137697 TCCCATGAGCATGCATCTCT 58.862 50.000 21.98 11.28 37.49 3.10
3761 4515 9.550406 CAAAGGAATTTTATGCATAACCATGAT 57.450 29.630 18.70 5.81 33.67 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 7.171508 CAGCACAACAGAACATTCTTACTAGAA 59.828 37.037 0.00 0.00 44.16 2.10
115 116 6.646653 CAGCACAACAGAACATTCTTACTAGA 59.353 38.462 0.00 0.00 34.74 2.43
116 117 6.646653 TCAGCACAACAGAACATTCTTACTAG 59.353 38.462 0.00 0.00 34.74 2.57
117 118 6.521162 TCAGCACAACAGAACATTCTTACTA 58.479 36.000 0.00 0.00 34.74 1.82
118 119 5.368145 TCAGCACAACAGAACATTCTTACT 58.632 37.500 0.00 0.00 34.74 2.24
119 120 5.673337 TCAGCACAACAGAACATTCTTAC 57.327 39.130 0.00 0.00 34.74 2.34
120 121 6.691754 TTTCAGCACAACAGAACATTCTTA 57.308 33.333 0.00 0.00 34.74 2.10
121 122 5.581126 TTTCAGCACAACAGAACATTCTT 57.419 34.783 0.00 0.00 34.74 2.52
122 123 5.581126 TTTTCAGCACAACAGAACATTCT 57.419 34.783 0.00 0.00 38.25 2.40
123 124 5.807011 ACTTTTTCAGCACAACAGAACATTC 59.193 36.000 0.00 0.00 0.00 2.67
124 125 5.723295 ACTTTTTCAGCACAACAGAACATT 58.277 33.333 0.00 0.00 0.00 2.71
125 126 5.329035 ACTTTTTCAGCACAACAGAACAT 57.671 34.783 0.00 0.00 0.00 2.71
126 127 4.782019 ACTTTTTCAGCACAACAGAACA 57.218 36.364 0.00 0.00 0.00 3.18
127 128 6.494842 TCATACTTTTTCAGCACAACAGAAC 58.505 36.000 0.00 0.00 0.00 3.01
128 129 6.691754 TCATACTTTTTCAGCACAACAGAA 57.308 33.333 0.00 0.00 0.00 3.02
129 130 6.318648 ACTTCATACTTTTTCAGCACAACAGA 59.681 34.615 0.00 0.00 0.00 3.41
130 131 6.498304 ACTTCATACTTTTTCAGCACAACAG 58.502 36.000 0.00 0.00 0.00 3.16
131 132 6.449635 ACTTCATACTTTTTCAGCACAACA 57.550 33.333 0.00 0.00 0.00 3.33
132 133 6.972328 TGAACTTCATACTTTTTCAGCACAAC 59.028 34.615 0.00 0.00 0.00 3.32
133 134 7.094508 TGAACTTCATACTTTTTCAGCACAA 57.905 32.000 0.00 0.00 0.00 3.33
134 135 6.691754 TGAACTTCATACTTTTTCAGCACA 57.308 33.333 0.00 0.00 0.00 4.57
135 136 9.282247 CATATGAACTTCATACTTTTTCAGCAC 57.718 33.333 12.76 0.00 41.62 4.40
136 137 9.013229 ACATATGAACTTCATACTTTTTCAGCA 57.987 29.630 10.38 0.00 41.62 4.41
137 138 9.846248 AACATATGAACTTCATACTTTTTCAGC 57.154 29.630 10.38 0.00 41.62 4.26
170 171 9.326413 ACTTTTCTCTTTTTCGTTTCTCTCATA 57.674 29.630 0.00 0.00 0.00 2.15
171 172 8.214721 ACTTTTCTCTTTTTCGTTTCTCTCAT 57.785 30.769 0.00 0.00 0.00 2.90
172 173 7.611213 ACTTTTCTCTTTTTCGTTTCTCTCA 57.389 32.000 0.00 0.00 0.00 3.27
173 174 8.819015 AGTACTTTTCTCTTTTTCGTTTCTCTC 58.181 33.333 0.00 0.00 0.00 3.20
174 175 8.719560 AGTACTTTTCTCTTTTTCGTTTCTCT 57.280 30.769 0.00 0.00 0.00 3.10
175 176 9.211556 CAAGTACTTTTCTCTTTTTCGTTTCTC 57.788 33.333 5.07 0.00 0.00 2.87
176 177 7.696872 GCAAGTACTTTTCTCTTTTTCGTTTCT 59.303 33.333 5.07 0.00 0.00 2.52
177 178 7.483691 TGCAAGTACTTTTCTCTTTTTCGTTTC 59.516 33.333 5.07 0.00 0.00 2.78
178 179 7.272731 GTGCAAGTACTTTTCTCTTTTTCGTTT 59.727 33.333 5.07 0.00 0.00 3.60
179 180 6.745907 GTGCAAGTACTTTTCTCTTTTTCGTT 59.254 34.615 5.07 0.00 0.00 3.85
180 181 6.255950 GTGCAAGTACTTTTCTCTTTTTCGT 58.744 36.000 5.07 0.00 0.00 3.85
181 182 5.392585 CGTGCAAGTACTTTTCTCTTTTTCG 59.607 40.000 5.07 0.00 0.00 3.46
182 183 6.483687 TCGTGCAAGTACTTTTCTCTTTTTC 58.516 36.000 5.07 0.00 0.00 2.29
183 184 6.431198 TCGTGCAAGTACTTTTCTCTTTTT 57.569 33.333 5.07 0.00 0.00 1.94
184 185 6.431198 TTCGTGCAAGTACTTTTCTCTTTT 57.569 33.333 5.07 0.00 0.00 2.27
185 186 6.564125 CGATTCGTGCAAGTACTTTTCTCTTT 60.564 38.462 5.07 0.00 0.00 2.52
186 187 5.107453 CGATTCGTGCAAGTACTTTTCTCTT 60.107 40.000 5.07 0.00 0.00 2.85
187 188 4.386049 CGATTCGTGCAAGTACTTTTCTCT 59.614 41.667 5.07 0.00 0.00 3.10
188 189 4.629065 CGATTCGTGCAAGTACTTTTCTC 58.371 43.478 5.07 1.46 0.00 2.87
189 190 3.120649 GCGATTCGTGCAAGTACTTTTCT 60.121 43.478 5.07 0.00 0.00 2.52
190 191 3.153735 GCGATTCGTGCAAGTACTTTTC 58.846 45.455 5.07 1.49 0.00 2.29
191 192 2.411031 CGCGATTCGTGCAAGTACTTTT 60.411 45.455 5.07 0.00 0.00 2.27
192 193 1.126113 CGCGATTCGTGCAAGTACTTT 59.874 47.619 5.07 0.00 0.00 2.66
193 194 0.713883 CGCGATTCGTGCAAGTACTT 59.286 50.000 0.00 1.12 0.00 2.24
194 195 0.109458 TCGCGATTCGTGCAAGTACT 60.109 50.000 14.55 0.00 37.28 2.73
195 196 0.921347 ATCGCGATTCGTGCAAGTAC 59.079 50.000 17.62 0.00 37.28 2.73
196 197 0.920664 CATCGCGATTCGTGCAAGTA 59.079 50.000 21.14 0.00 37.28 2.24
197 198 1.709760 CATCGCGATTCGTGCAAGT 59.290 52.632 21.14 0.00 37.28 3.16
198 199 1.649348 GCATCGCGATTCGTGCAAG 60.649 57.895 23.50 10.41 41.45 4.01
199 200 2.295394 CTGCATCGCGATTCGTGCAA 62.295 55.000 28.66 16.45 46.25 4.08
200 201 2.801624 CTGCATCGCGATTCGTGCA 61.802 57.895 27.60 27.60 45.53 4.57
201 202 2.024226 TTCTGCATCGCGATTCGTGC 62.024 55.000 21.14 21.71 41.84 5.34
202 203 0.578683 ATTCTGCATCGCGATTCGTG 59.421 50.000 21.14 11.32 39.67 4.35
203 204 1.004610 CAATTCTGCATCGCGATTCGT 60.005 47.619 21.14 0.00 39.67 3.85
204 205 1.258720 TCAATTCTGCATCGCGATTCG 59.741 47.619 21.14 10.71 40.15 3.34
205 206 3.031812 GTTCAATTCTGCATCGCGATTC 58.968 45.455 21.14 16.27 0.00 2.52
206 207 2.537529 CGTTCAATTCTGCATCGCGATT 60.538 45.455 21.14 0.00 0.00 3.34
207 208 1.004610 CGTTCAATTCTGCATCGCGAT 60.005 47.619 17.62 17.62 0.00 4.58
208 209 0.369931 CGTTCAATTCTGCATCGCGA 59.630 50.000 13.09 13.09 0.00 5.87
209 210 0.587242 CCGTTCAATTCTGCATCGCG 60.587 55.000 0.00 0.00 0.00 5.87
210 211 0.863119 GCCGTTCAATTCTGCATCGC 60.863 55.000 0.00 0.00 0.00 4.58
211 212 0.729116 AGCCGTTCAATTCTGCATCG 59.271 50.000 0.00 0.00 0.00 3.84
212 213 3.198068 TCTAGCCGTTCAATTCTGCATC 58.802 45.455 0.00 0.00 0.00 3.91
213 214 3.266510 TCTAGCCGTTCAATTCTGCAT 57.733 42.857 0.00 0.00 0.00 3.96
214 215 2.760634 TCTAGCCGTTCAATTCTGCA 57.239 45.000 0.00 0.00 0.00 4.41
215 216 4.212214 CCTTATCTAGCCGTTCAATTCTGC 59.788 45.833 0.00 0.00 0.00 4.26
216 217 4.752101 CCCTTATCTAGCCGTTCAATTCTG 59.248 45.833 0.00 0.00 0.00 3.02
217 218 4.202367 CCCCTTATCTAGCCGTTCAATTCT 60.202 45.833 0.00 0.00 0.00 2.40
218 219 4.065789 CCCCTTATCTAGCCGTTCAATTC 58.934 47.826 0.00 0.00 0.00 2.17
219 220 3.181443 CCCCCTTATCTAGCCGTTCAATT 60.181 47.826 0.00 0.00 0.00 2.32
220 221 2.372172 CCCCCTTATCTAGCCGTTCAAT 59.628 50.000 0.00 0.00 0.00 2.57
221 222 1.766496 CCCCCTTATCTAGCCGTTCAA 59.234 52.381 0.00 0.00 0.00 2.69
222 223 1.343681 ACCCCCTTATCTAGCCGTTCA 60.344 52.381 0.00 0.00 0.00 3.18
223 224 1.070289 CACCCCCTTATCTAGCCGTTC 59.930 57.143 0.00 0.00 0.00 3.95
224 225 1.129058 CACCCCCTTATCTAGCCGTT 58.871 55.000 0.00 0.00 0.00 4.44
225 226 0.031414 ACACCCCCTTATCTAGCCGT 60.031 55.000 0.00 0.00 0.00 5.68
226 227 0.680061 GACACCCCCTTATCTAGCCG 59.320 60.000 0.00 0.00 0.00 5.52
227 228 1.057471 GGACACCCCCTTATCTAGCC 58.943 60.000 0.00 0.00 0.00 3.93
228 229 1.802553 TGGACACCCCCTTATCTAGC 58.197 55.000 0.00 0.00 0.00 3.42
229 230 3.580458 CTCATGGACACCCCCTTATCTAG 59.420 52.174 0.00 0.00 0.00 2.43
230 231 3.587498 CTCATGGACACCCCCTTATCTA 58.413 50.000 0.00 0.00 0.00 1.98
231 232 2.412591 CTCATGGACACCCCCTTATCT 58.587 52.381 0.00 0.00 0.00 1.98
232 233 1.202818 GCTCATGGACACCCCCTTATC 60.203 57.143 0.00 0.00 0.00 1.75
233 234 0.846693 GCTCATGGACACCCCCTTAT 59.153 55.000 0.00 0.00 0.00 1.73
234 235 1.279025 GGCTCATGGACACCCCCTTA 61.279 60.000 0.00 0.00 0.00 2.69
235 236 2.616458 GGCTCATGGACACCCCCTT 61.616 63.158 0.00 0.00 0.00 3.95
236 237 2.194951 TAGGCTCATGGACACCCCCT 62.195 60.000 0.00 0.00 0.00 4.79
237 238 1.279025 TTAGGCTCATGGACACCCCC 61.279 60.000 0.00 0.00 0.00 5.40
238 239 0.181350 CTTAGGCTCATGGACACCCC 59.819 60.000 0.00 0.00 0.00 4.95
239 240 0.464554 GCTTAGGCTCATGGACACCC 60.465 60.000 0.00 0.00 35.22 4.61
240 241 3.086733 GCTTAGGCTCATGGACACC 57.913 57.895 0.00 0.00 35.22 4.16
251 252 5.883115 GGAAAATATCCTATGGAGCTTAGGC 59.117 44.000 5.22 0.00 45.56 3.93
252 253 6.070767 TCGGAAAATATCCTATGGAGCTTAGG 60.071 42.308 3.84 3.84 46.98 2.69
253 254 6.936279 TCGGAAAATATCCTATGGAGCTTAG 58.064 40.000 0.00 0.00 46.98 2.18
254 255 6.574465 GCTCGGAAAATATCCTATGGAGCTTA 60.574 42.308 12.14 0.00 46.33 3.09
255 256 5.799213 CTCGGAAAATATCCTATGGAGCTT 58.201 41.667 0.00 0.00 46.98 3.74
256 257 4.323104 GCTCGGAAAATATCCTATGGAGCT 60.323 45.833 12.14 0.00 46.33 4.09
257 258 3.935828 GCTCGGAAAATATCCTATGGAGC 59.064 47.826 6.42 6.42 46.98 4.70
258 259 4.082190 TCGCTCGGAAAATATCCTATGGAG 60.082 45.833 0.00 0.00 46.98 3.86
259 260 3.830178 TCGCTCGGAAAATATCCTATGGA 59.170 43.478 0.00 0.00 46.98 3.41
260 261 4.188247 TCGCTCGGAAAATATCCTATGG 57.812 45.455 0.00 0.00 46.98 2.74
261 262 5.696724 AGTTTCGCTCGGAAAATATCCTATG 59.303 40.000 0.00 0.00 45.74 2.23
262 263 5.696724 CAGTTTCGCTCGGAAAATATCCTAT 59.303 40.000 0.00 0.00 45.74 2.57
263 264 5.047847 CAGTTTCGCTCGGAAAATATCCTA 58.952 41.667 0.00 0.00 45.74 2.94
264 265 3.871594 CAGTTTCGCTCGGAAAATATCCT 59.128 43.478 0.00 0.00 45.74 3.24
265 266 3.546218 GCAGTTTCGCTCGGAAAATATCC 60.546 47.826 0.00 0.00 45.74 2.59
266 267 3.309954 AGCAGTTTCGCTCGGAAAATATC 59.690 43.478 0.00 0.00 45.74 1.63
267 268 3.063997 CAGCAGTTTCGCTCGGAAAATAT 59.936 43.478 0.00 0.00 45.74 1.28
268 269 2.415168 CAGCAGTTTCGCTCGGAAAATA 59.585 45.455 0.00 0.00 45.74 1.40
269 270 1.197721 CAGCAGTTTCGCTCGGAAAAT 59.802 47.619 0.00 0.00 45.74 1.82
270 271 0.586319 CAGCAGTTTCGCTCGGAAAA 59.414 50.000 0.00 0.00 45.74 2.29
271 272 1.227999 CCAGCAGTTTCGCTCGGAAA 61.228 55.000 0.00 0.00 41.38 3.13
272 273 1.667830 CCAGCAGTTTCGCTCGGAA 60.668 57.895 0.00 0.00 41.38 4.30
273 274 2.048222 CCAGCAGTTTCGCTCGGA 60.048 61.111 0.00 0.00 41.38 4.55
274 275 1.961277 AACCAGCAGTTTCGCTCGG 60.961 57.895 0.00 0.00 41.38 4.63
275 276 1.205064 CAACCAGCAGTTTCGCTCG 59.795 57.895 0.00 0.00 41.38 5.03
276 277 1.081840 GCAACCAGCAGTTTCGCTC 60.082 57.895 0.00 0.00 41.38 5.03
277 278 3.034030 GCAACCAGCAGTTTCGCT 58.966 55.556 0.00 0.00 45.21 4.93
278 279 2.737932 CTGGCAACCAGCAGTTTCGC 62.738 60.000 0.00 0.00 45.13 4.70
279 280 1.283793 CTGGCAACCAGCAGTTTCG 59.716 57.895 0.00 0.00 45.13 3.46
306 307 4.688419 TCGTTCGCCGACCACGTC 62.688 66.667 10.67 0.00 41.60 4.34
314 315 1.015085 TGGGTTAACATCGTTCGCCG 61.015 55.000 8.10 0.00 38.13 6.46
315 316 1.158434 TTGGGTTAACATCGTTCGCC 58.842 50.000 8.10 0.00 0.00 5.54
316 317 2.477189 CCATTGGGTTAACATCGTTCGC 60.477 50.000 8.10 0.00 0.00 4.70
317 318 2.477189 GCCATTGGGTTAACATCGTTCG 60.477 50.000 8.10 0.00 36.17 3.95
318 319 2.490115 TGCCATTGGGTTAACATCGTTC 59.510 45.455 8.10 0.00 36.17 3.95
319 320 2.520069 TGCCATTGGGTTAACATCGTT 58.480 42.857 8.10 0.00 36.17 3.85
320 321 2.208132 TGCCATTGGGTTAACATCGT 57.792 45.000 8.10 0.00 36.17 3.73
321 322 3.446799 CATTGCCATTGGGTTAACATCG 58.553 45.455 8.10 0.00 36.17 3.84
322 323 3.197549 ACCATTGCCATTGGGTTAACATC 59.802 43.478 8.10 0.00 38.64 3.06
323 324 3.180507 ACCATTGCCATTGGGTTAACAT 58.819 40.909 8.10 0.00 38.64 2.71
324 325 2.614259 ACCATTGCCATTGGGTTAACA 58.386 42.857 8.10 0.00 38.64 2.41
325 326 3.333804 CAACCATTGCCATTGGGTTAAC 58.666 45.455 10.20 0.00 41.49 2.01
326 327 2.304180 CCAACCATTGCCATTGGGTTAA 59.696 45.455 10.20 0.00 41.49 2.01
327 328 1.905215 CCAACCATTGCCATTGGGTTA 59.095 47.619 10.20 0.00 41.49 2.85
328 329 0.691904 CCAACCATTGCCATTGGGTT 59.308 50.000 10.20 0.49 44.11 4.11
329 330 0.473501 ACCAACCATTGCCATTGGGT 60.474 50.000 10.20 0.16 46.03 4.51
330 331 1.566211 TACCAACCATTGCCATTGGG 58.434 50.000 10.20 0.00 46.03 4.12
331 332 3.692257 TTTACCAACCATTGCCATTGG 57.308 42.857 4.10 4.10 46.95 3.16
332 333 7.862512 AATTATTTACCAACCATTGCCATTG 57.137 32.000 0.00 0.00 0.00 2.82
333 334 9.612066 CTTAATTATTTACCAACCATTGCCATT 57.388 29.630 0.00 0.00 0.00 3.16
334 335 8.767436 ACTTAATTATTTACCAACCATTGCCAT 58.233 29.630 0.00 0.00 0.00 4.40
335 336 8.140112 ACTTAATTATTTACCAACCATTGCCA 57.860 30.769 0.00 0.00 0.00 4.92
341 342 9.256228 TGCCATTACTTAATTATTTACCAACCA 57.744 29.630 0.00 0.00 0.00 3.67
349 350 8.210265 CCCACCAATGCCATTACTTAATTATTT 58.790 33.333 0.00 0.00 0.00 1.40
350 351 7.346960 ACCCACCAATGCCATTACTTAATTATT 59.653 33.333 0.00 0.00 0.00 1.40
351 352 6.843861 ACCCACCAATGCCATTACTTAATTAT 59.156 34.615 0.00 0.00 0.00 1.28
352 353 6.198639 ACCCACCAATGCCATTACTTAATTA 58.801 36.000 0.00 0.00 0.00 1.40
353 354 5.029474 ACCCACCAATGCCATTACTTAATT 58.971 37.500 0.00 0.00 0.00 1.40
354 355 4.619679 ACCCACCAATGCCATTACTTAAT 58.380 39.130 0.00 0.00 0.00 1.40
355 356 4.054359 ACCCACCAATGCCATTACTTAA 57.946 40.909 0.00 0.00 0.00 1.85
356 357 3.748645 ACCCACCAATGCCATTACTTA 57.251 42.857 0.00 0.00 0.00 2.24
357 358 2.621556 ACCCACCAATGCCATTACTT 57.378 45.000 0.00 0.00 0.00 2.24
358 359 3.748645 TTACCCACCAATGCCATTACT 57.251 42.857 0.00 0.00 0.00 2.24
359 360 6.472686 TTAATTACCCACCAATGCCATTAC 57.527 37.500 0.00 0.00 0.00 1.89
360 361 7.331791 GTTTTAATTACCCACCAATGCCATTA 58.668 34.615 0.00 0.00 0.00 1.90
361 362 6.176896 GTTTTAATTACCCACCAATGCCATT 58.823 36.000 0.00 0.00 0.00 3.16
362 363 5.625656 CGTTTTAATTACCCACCAATGCCAT 60.626 40.000 0.00 0.00 0.00 4.40
363 364 4.322049 CGTTTTAATTACCCACCAATGCCA 60.322 41.667 0.00 0.00 0.00 4.92
364 365 4.177783 CGTTTTAATTACCCACCAATGCC 58.822 43.478 0.00 0.00 0.00 4.40
365 366 4.811908 ACGTTTTAATTACCCACCAATGC 58.188 39.130 0.00 0.00 0.00 3.56
366 367 8.813643 TTTTACGTTTTAATTACCCACCAATG 57.186 30.769 0.00 0.00 0.00 2.82
367 368 9.425577 CATTTTACGTTTTAATTACCCACCAAT 57.574 29.630 0.00 0.00 0.00 3.16
368 369 7.384387 GCATTTTACGTTTTAATTACCCACCAA 59.616 33.333 0.00 0.00 0.00 3.67
369 370 6.867293 GCATTTTACGTTTTAATTACCCACCA 59.133 34.615 0.00 0.00 0.00 4.17
370 371 6.033725 CGCATTTTACGTTTTAATTACCCACC 59.966 38.462 0.00 0.00 0.00 4.61
371 372 6.581919 ACGCATTTTACGTTTTAATTACCCAC 59.418 34.615 0.00 0.00 41.93 4.61
372 373 6.675987 ACGCATTTTACGTTTTAATTACCCA 58.324 32.000 0.00 0.00 41.93 4.51
385 386 5.791589 TCAGCATACTAAACGCATTTTACG 58.208 37.500 0.00 0.00 0.00 3.18
386 387 6.687105 CCTTCAGCATACTAAACGCATTTTAC 59.313 38.462 0.00 0.00 0.00 2.01
387 388 6.183360 CCCTTCAGCATACTAAACGCATTTTA 60.183 38.462 0.00 0.00 0.00 1.52
388 389 5.393027 CCCTTCAGCATACTAAACGCATTTT 60.393 40.000 0.00 0.00 0.00 1.82
389 390 4.096382 CCCTTCAGCATACTAAACGCATTT 59.904 41.667 0.00 0.00 0.00 2.32
390 391 3.627577 CCCTTCAGCATACTAAACGCATT 59.372 43.478 0.00 0.00 0.00 3.56
391 392 3.118408 TCCCTTCAGCATACTAAACGCAT 60.118 43.478 0.00 0.00 0.00 4.73
392 393 2.235155 TCCCTTCAGCATACTAAACGCA 59.765 45.455 0.00 0.00 0.00 5.24
393 394 2.901249 TCCCTTCAGCATACTAAACGC 58.099 47.619 0.00 0.00 0.00 4.84
394 395 4.442706 ACATCCCTTCAGCATACTAAACG 58.557 43.478 0.00 0.00 0.00 3.60
395 396 6.702282 GTCTACATCCCTTCAGCATACTAAAC 59.298 42.308 0.00 0.00 0.00 2.01
396 397 6.183360 GGTCTACATCCCTTCAGCATACTAAA 60.183 42.308 0.00 0.00 0.00 1.85
397 398 5.304614 GGTCTACATCCCTTCAGCATACTAA 59.695 44.000 0.00 0.00 0.00 2.24
398 399 4.833380 GGTCTACATCCCTTCAGCATACTA 59.167 45.833 0.00 0.00 0.00 1.82
399 400 3.643792 GGTCTACATCCCTTCAGCATACT 59.356 47.826 0.00 0.00 0.00 2.12
400 401 3.388024 TGGTCTACATCCCTTCAGCATAC 59.612 47.826 0.00 0.00 0.00 2.39
401 402 3.653164 TGGTCTACATCCCTTCAGCATA 58.347 45.455 0.00 0.00 0.00 3.14
402 403 2.481441 TGGTCTACATCCCTTCAGCAT 58.519 47.619 0.00 0.00 0.00 3.79
403 404 1.951209 TGGTCTACATCCCTTCAGCA 58.049 50.000 0.00 0.00 0.00 4.41
413 414 9.334947 CAAAATCTACAATCTGATGGTCTACAT 57.665 33.333 0.00 0.00 44.18 2.29
414 415 8.539544 TCAAAATCTACAATCTGATGGTCTACA 58.460 33.333 0.00 0.00 0.00 2.74
415 416 8.948631 TCAAAATCTACAATCTGATGGTCTAC 57.051 34.615 0.00 0.00 0.00 2.59
416 417 9.551734 CATCAAAATCTACAATCTGATGGTCTA 57.448 33.333 0.00 0.00 37.55 2.59
417 418 8.447924 CATCAAAATCTACAATCTGATGGTCT 57.552 34.615 0.00 0.00 37.55 3.85
422 423 9.736414 CCTATCCATCAAAATCTACAATCTGAT 57.264 33.333 0.00 0.00 0.00 2.90
423 424 8.937835 TCCTATCCATCAAAATCTACAATCTGA 58.062 33.333 0.00 0.00 0.00 3.27
424 425 9.736414 ATCCTATCCATCAAAATCTACAATCTG 57.264 33.333 0.00 0.00 0.00 2.90
425 426 9.736414 CATCCTATCCATCAAAATCTACAATCT 57.264 33.333 0.00 0.00 0.00 2.40
426 427 9.730705 TCATCCTATCCATCAAAATCTACAATC 57.269 33.333 0.00 0.00 0.00 2.67
428 429 9.730705 GATCATCCTATCCATCAAAATCTACAA 57.269 33.333 0.00 0.00 0.00 2.41
429 430 9.109246 AGATCATCCTATCCATCAAAATCTACA 57.891 33.333 0.00 0.00 0.00 2.74
430 431 9.381033 CAGATCATCCTATCCATCAAAATCTAC 57.619 37.037 0.00 0.00 0.00 2.59
431 432 8.546322 CCAGATCATCCTATCCATCAAAATCTA 58.454 37.037 0.00 0.00 0.00 1.98
432 433 7.018349 ACCAGATCATCCTATCCATCAAAATCT 59.982 37.037 0.00 0.00 0.00 2.40
433 434 7.173722 ACCAGATCATCCTATCCATCAAAATC 58.826 38.462 0.00 0.00 0.00 2.17
434 435 7.100068 ACCAGATCATCCTATCCATCAAAAT 57.900 36.000 0.00 0.00 0.00 1.82
435 436 6.520021 ACCAGATCATCCTATCCATCAAAA 57.480 37.500 0.00 0.00 0.00 2.44
436 437 6.331042 AGAACCAGATCATCCTATCCATCAAA 59.669 38.462 0.00 0.00 0.00 2.69
437 438 5.848369 AGAACCAGATCATCCTATCCATCAA 59.152 40.000 0.00 0.00 0.00 2.57
438 439 5.409712 AGAACCAGATCATCCTATCCATCA 58.590 41.667 0.00 0.00 0.00 3.07
439 440 5.104982 GGAGAACCAGATCATCCTATCCATC 60.105 48.000 0.00 0.00 35.97 3.51
440 441 4.782156 GGAGAACCAGATCATCCTATCCAT 59.218 45.833 0.00 0.00 35.97 3.41
441 442 4.163427 GGAGAACCAGATCATCCTATCCA 58.837 47.826 0.00 0.00 35.97 3.41
442 443 3.194542 CGGAGAACCAGATCATCCTATCC 59.805 52.174 0.00 0.00 35.59 2.59
443 444 3.367910 GCGGAGAACCAGATCATCCTATC 60.368 52.174 0.00 0.00 35.59 2.08
444 445 2.564947 GCGGAGAACCAGATCATCCTAT 59.435 50.000 0.00 0.00 35.59 2.57
445 446 1.964223 GCGGAGAACCAGATCATCCTA 59.036 52.381 0.00 0.00 35.59 2.94
446 447 0.755686 GCGGAGAACCAGATCATCCT 59.244 55.000 0.00 0.00 35.59 3.24
447 448 0.250081 GGCGGAGAACCAGATCATCC 60.250 60.000 0.00 0.00 35.59 3.51
448 449 0.250081 GGGCGGAGAACCAGATCATC 60.250 60.000 0.00 0.00 35.59 2.92
449 450 0.692419 AGGGCGGAGAACCAGATCAT 60.692 55.000 0.00 0.00 35.59 2.45
450 451 1.306141 AGGGCGGAGAACCAGATCA 60.306 57.895 0.00 0.00 35.59 2.92
451 452 1.045911 AGAGGGCGGAGAACCAGATC 61.046 60.000 0.00 0.00 35.59 2.75
452 453 1.002274 AGAGGGCGGAGAACCAGAT 59.998 57.895 0.00 0.00 35.59 2.90
453 454 1.682684 GAGAGGGCGGAGAACCAGA 60.683 63.158 0.00 0.00 35.59 3.86
454 455 1.261238 AAGAGAGGGCGGAGAACCAG 61.261 60.000 0.00 0.00 35.59 4.00
455 456 0.836400 AAAGAGAGGGCGGAGAACCA 60.836 55.000 0.00 0.00 35.59 3.67
456 457 0.108089 GAAAGAGAGGGCGGAGAACC 60.108 60.000 0.00 0.00 0.00 3.62
457 458 0.899019 AGAAAGAGAGGGCGGAGAAC 59.101 55.000 0.00 0.00 0.00 3.01
458 459 1.645710 AAGAAAGAGAGGGCGGAGAA 58.354 50.000 0.00 0.00 0.00 2.87
459 460 1.645710 AAAGAAAGAGAGGGCGGAGA 58.354 50.000 0.00 0.00 0.00 3.71
460 461 2.481289 AAAAGAAAGAGAGGGCGGAG 57.519 50.000 0.00 0.00 0.00 4.63
461 462 4.715297 ACTATAAAAGAAAGAGAGGGCGGA 59.285 41.667 0.00 0.00 0.00 5.54
462 463 4.811557 CACTATAAAAGAAAGAGAGGGCGG 59.188 45.833 0.00 0.00 0.00 6.13
463 464 4.811557 CCACTATAAAAGAAAGAGAGGGCG 59.188 45.833 0.00 0.00 0.00 6.13
464 465 5.746284 ACCACTATAAAAGAAAGAGAGGGC 58.254 41.667 0.00 0.00 0.00 5.19
465 466 8.080363 ACTACCACTATAAAAGAAAGAGAGGG 57.920 38.462 0.00 0.00 0.00 4.30
479 480 9.862149 TGTGAATCTGAATCTACTACCACTATA 57.138 33.333 0.00 0.00 0.00 1.31
480 481 8.768501 TGTGAATCTGAATCTACTACCACTAT 57.231 34.615 0.00 0.00 0.00 2.12
481 482 8.633561 CATGTGAATCTGAATCTACTACCACTA 58.366 37.037 0.00 0.00 0.00 2.74
482 483 7.343057 TCATGTGAATCTGAATCTACTACCACT 59.657 37.037 0.00 0.00 0.00 4.00
483 484 7.492524 TCATGTGAATCTGAATCTACTACCAC 58.507 38.462 0.00 0.00 0.00 4.16
484 485 7.660030 TCATGTGAATCTGAATCTACTACCA 57.340 36.000 0.00 0.00 0.00 3.25
515 516 2.223144 TCTCACCAAATTTTCGAGCACG 59.777 45.455 0.00 0.00 41.26 5.34
550 551 1.072505 GGAGAGCAAAACCACGGGA 59.927 57.895 0.00 0.00 0.00 5.14
574 575 1.032114 GGCCCATGGTTTCTCTTCCG 61.032 60.000 11.73 0.00 0.00 4.30
596 597 0.661187 GTTTGTGTCTGCATGTGCCG 60.661 55.000 2.07 0.00 41.18 5.69
655 656 5.401550 CATTTGTTTTGGCGATGTGTCTAT 58.598 37.500 0.00 0.00 0.00 1.98
656 657 4.793071 CATTTGTTTTGGCGATGTGTCTA 58.207 39.130 0.00 0.00 0.00 2.59
657 658 3.641648 CATTTGTTTTGGCGATGTGTCT 58.358 40.909 0.00 0.00 0.00 3.41
658 659 2.155539 GCATTTGTTTTGGCGATGTGTC 59.844 45.455 0.00 0.00 0.00 3.67
659 660 2.134346 GCATTTGTTTTGGCGATGTGT 58.866 42.857 0.00 0.00 0.00 3.72
660 661 2.133553 TGCATTTGTTTTGGCGATGTG 58.866 42.857 0.00 0.00 0.00 3.21
661 662 2.224018 ACTGCATTTGTTTTGGCGATGT 60.224 40.909 0.00 0.00 0.00 3.06
662 663 2.406130 ACTGCATTTGTTTTGGCGATG 58.594 42.857 0.00 0.00 0.00 3.84
663 664 2.818130 ACTGCATTTGTTTTGGCGAT 57.182 40.000 0.00 0.00 0.00 4.58
664 665 2.606795 GCTACTGCATTTGTTTTGGCGA 60.607 45.455 0.00 0.00 39.41 5.54
665 666 1.720852 GCTACTGCATTTGTTTTGGCG 59.279 47.619 0.00 0.00 39.41 5.69
666 667 3.030668 AGCTACTGCATTTGTTTTGGC 57.969 42.857 0.00 0.00 42.74 4.52
667 668 5.048782 TCTGTAGCTACTGCATTTGTTTTGG 60.049 40.000 23.84 0.00 42.74 3.28
668 669 6.000891 TCTGTAGCTACTGCATTTGTTTTG 57.999 37.500 23.84 0.44 42.74 2.44
669 670 6.633500 TTCTGTAGCTACTGCATTTGTTTT 57.367 33.333 23.84 0.00 42.74 2.43
670 671 6.633500 TTTCTGTAGCTACTGCATTTGTTT 57.367 33.333 23.84 0.00 42.74 2.83
671 672 6.824305 ATTTCTGTAGCTACTGCATTTGTT 57.176 33.333 23.84 3.64 42.74 2.83
672 673 6.824305 AATTTCTGTAGCTACTGCATTTGT 57.176 33.333 23.84 5.76 42.74 2.83
673 674 7.859377 CCATAATTTCTGTAGCTACTGCATTTG 59.141 37.037 23.84 19.16 42.74 2.32
674 675 7.775093 TCCATAATTTCTGTAGCTACTGCATTT 59.225 33.333 23.84 17.13 42.74 2.32
675 676 7.282585 TCCATAATTTCTGTAGCTACTGCATT 58.717 34.615 23.84 22.16 42.74 3.56
676 677 6.830912 TCCATAATTTCTGTAGCTACTGCAT 58.169 36.000 23.84 15.07 42.74 3.96
677 678 6.127054 ACTCCATAATTTCTGTAGCTACTGCA 60.127 38.462 23.84 11.93 42.74 4.41
678 679 6.284459 ACTCCATAATTTCTGTAGCTACTGC 58.716 40.000 23.84 0.00 40.05 4.40
679 680 9.469807 CTTACTCCATAATTTCTGTAGCTACTG 57.530 37.037 23.84 22.49 0.00 2.74
680 681 9.422681 TCTTACTCCATAATTTCTGTAGCTACT 57.577 33.333 23.84 5.90 0.00 2.57
683 684 9.606631 CTTTCTTACTCCATAATTTCTGTAGCT 57.393 33.333 0.00 0.00 0.00 3.32
684 685 9.384764 ACTTTCTTACTCCATAATTTCTGTAGC 57.615 33.333 0.00 0.00 0.00 3.58
692 693 9.232473 GGTCAAAGACTTTCTTACTCCATAATT 57.768 33.333 0.00 0.00 35.27 1.40
693 694 8.606830 AGGTCAAAGACTTTCTTACTCCATAAT 58.393 33.333 0.00 0.00 35.27 1.28
694 695 7.974504 AGGTCAAAGACTTTCTTACTCCATAA 58.025 34.615 0.00 0.00 35.27 1.90
695 696 7.455008 AGAGGTCAAAGACTTTCTTACTCCATA 59.545 37.037 0.00 0.00 35.27 2.74
803 816 4.161189 AGAATGCGAATTTCAGAGGAGAGA 59.839 41.667 0.00 0.00 0.00 3.10
956 1012 4.431809 CTGACAAAGCAAACACCATCAAA 58.568 39.130 0.00 0.00 0.00 2.69
1028 1084 1.146930 GCCGCATCCTCCATCTTCA 59.853 57.895 0.00 0.00 0.00 3.02
1031 1087 3.933722 CCGCCGCATCCTCCATCT 61.934 66.667 0.00 0.00 0.00 2.90
1143 1199 2.025155 GGATCAAGAGACTCACGGCTA 58.975 52.381 5.02 0.00 0.00 3.93
1210 1277 6.820656 AGCATTATTCACAGAGAGACGAAAAT 59.179 34.615 0.00 0.00 0.00 1.82
1273 1341 1.449070 CTGAGCATCTTCAGCGCCA 60.449 57.895 2.29 0.00 38.28 5.69
1301 1369 0.112606 TGACCAGGTCGAACTCCTCT 59.887 55.000 15.24 0.00 34.95 3.69
1340 1408 1.970917 GCTTGAAGCCGTCCATGTCG 61.971 60.000 5.74 0.00 34.48 4.35
1393 1461 6.346896 AGTAGTGAGTGTATACTGATGACGA 58.653 40.000 4.17 0.00 37.25 4.20
1423 1500 8.739972 ACATGCGAAAATAAAATTAGGACTTCT 58.260 29.630 0.00 0.00 0.00 2.85
1443 1520 6.861055 ACTCCTTAAAAACAATTGTACATGCG 59.139 34.615 12.39 0.00 0.00 4.73
1581 1674 9.891828 CTCAAAGTTAAAAATAGTGTGTGCATA 57.108 29.630 0.00 0.00 0.00 3.14
1687 1805 1.918800 ACCTCCGCTTTGCTACCCT 60.919 57.895 0.00 0.00 0.00 4.34
1760 2438 9.299465 ACTCTTACTAAGCTAGATTACCCATAC 57.701 37.037 0.00 0.00 0.00 2.39
2476 3176 7.331026 TGTTCCAACTAGGTAAATCAGATCAG 58.669 38.462 0.00 0.00 39.02 2.90
2687 3410 6.313905 CCGAGTGCTTATAGACAGAAAAATGT 59.686 38.462 0.00 0.00 35.68 2.71
2729 3453 8.011106 TCAAACGTTCAACGAAATCTATTAACC 58.989 33.333 18.84 0.00 46.05 2.85
2817 3548 3.370103 GGTTTATCCCCTTCATCACGACA 60.370 47.826 0.00 0.00 0.00 4.35
2899 3630 5.510430 TCTTCTCCTACTCTCAACATGCTA 58.490 41.667 0.00 0.00 0.00 3.49
3301 4032 6.448006 ACCTGTAGATGACTCGCAATATTAC 58.552 40.000 0.00 0.00 0.00 1.89
3411 4145 9.703892 TGATTGTTATGTTCCCACAAAATAAAG 57.296 29.630 0.00 0.00 36.16 1.85
3761 4515 2.646930 GACACATGCCATCTTCCATGA 58.353 47.619 7.53 0.00 40.92 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.