Multiple sequence alignment - TraesCS7B01G407900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G407900 chr7B 100.000 2568 0 0 1 2568 677303015 677305582 0.000000e+00 4743.0
1 TraesCS7B01G407900 chr7B 89.229 1634 144 16 947 2568 677188748 677190361 0.000000e+00 2013.0
2 TraesCS7B01G407900 chr7B 88.824 510 35 11 457 948 677187969 677188474 7.860000e-170 606.0
3 TraesCS7B01G407900 chr7B 85.859 495 33 12 552 1032 677220906 677221377 2.300000e-135 492.0
4 TraesCS7B01G407900 chr7B 80.560 571 81 16 935 1475 677356572 677357142 1.840000e-111 412.0
5 TraesCS7B01G407900 chr7B 79.762 336 48 10 864 1193 677217725 677217404 2.570000e-55 226.0
6 TraesCS7B01G407900 chr7B 85.567 97 13 1 457 552 230215131 230215035 1.630000e-17 100.0
7 TraesCS7B01G407900 chr7B 92.982 57 3 1 1 56 586227143 586227199 5.890000e-12 82.4
8 TraesCS7B01G407900 chr7A 88.846 1291 85 21 552 1806 690675771 690677038 0.000000e+00 1531.0
9 TraesCS7B01G407900 chr7A 86.374 866 96 15 1708 2568 690786365 690787213 0.000000e+00 926.0
10 TraesCS7B01G407900 chr7A 90.379 686 52 5 828 1513 690776548 690777219 0.000000e+00 889.0
11 TraesCS7B01G407900 chr7A 88.792 571 47 6 1798 2366 690703596 690704151 0.000000e+00 684.0
12 TraesCS7B01G407900 chr7A 87.955 357 37 4 458 811 690775950 690776303 1.420000e-112 416.0
13 TraesCS7B01G407900 chr7A 82.118 425 56 12 864 1283 690839383 690839792 1.890000e-91 346.0
14 TraesCS7B01G407900 chr7A 82.778 360 57 3 929 1283 690721990 690722349 1.480000e-82 316.0
15 TraesCS7B01G407900 chr7A 84.452 283 43 1 982 1264 690861061 690861342 7.000000e-71 278.0
16 TraesCS7B01G407900 chr7A 87.137 241 23 5 1 233 408692965 408692725 1.510000e-67 267.0
17 TraesCS7B01G407900 chr7A 88.542 192 20 1 1510 1701 690777623 690777812 5.530000e-57 231.0
18 TraesCS7B01G407900 chr7A 86.022 186 26 0 1281 1466 690861393 690861578 1.560000e-47 200.0
19 TraesCS7B01G407900 chr7A 86.239 109 12 1 235 340 640667889 640667781 5.810000e-22 115.0
20 TraesCS7B01G407900 chr7A 86.111 108 11 4 236 340 727827191 727827085 2.090000e-21 113.0
21 TraesCS7B01G407900 chr7D 90.413 1137 91 7 1259 2393 598295631 598296751 0.000000e+00 1480.0
22 TraesCS7B01G407900 chr7D 93.750 336 18 2 843 1178 598295303 598295635 3.810000e-138 501.0
23 TraesCS7B01G407900 chr7D 84.507 426 53 8 864 1283 598335457 598335875 2.380000e-110 409.0
24 TraesCS7B01G407900 chr7D 91.667 240 19 1 552 791 598294726 598294964 5.300000e-87 331.0
25 TraesCS7B01G407900 chr7D 86.364 242 24 4 1 233 368813063 368812822 3.280000e-64 255.0
26 TraesCS7B01G407900 chr7D 92.222 180 12 2 2391 2568 598302314 598302493 1.180000e-63 254.0
27 TraesCS7B01G407900 chr7D 85.567 97 12 2 457 552 15202268 15202173 1.630000e-17 100.0
28 TraesCS7B01G407900 chr5D 85.593 236 23 4 10 237 505424707 505424475 1.190000e-58 237.0
29 TraesCS7B01G407900 chr5D 81.743 241 35 7 1 233 318814812 318815051 2.610000e-45 193.0
30 TraesCS7B01G407900 chr5A 84.490 245 26 6 1 237 632909196 632908956 5.530000e-57 231.0
31 TraesCS7B01G407900 chr5A 84.322 236 29 6 21 248 488260089 488259854 9.250000e-55 224.0
32 TraesCS7B01G407900 chr5A 88.889 81 7 2 475 553 537362395 537362315 5.850000e-17 99.0
33 TraesCS7B01G407900 chr2B 84.647 241 28 5 1 233 488002417 488002178 5.530000e-57 231.0
34 TraesCS7B01G407900 chr2B 82.213 253 31 9 9 247 397010337 397010589 3.350000e-49 206.0
35 TraesCS7B01G407900 chr2B 86.735 98 10 3 457 553 639961768 639961863 3.490000e-19 106.0
36 TraesCS7B01G407900 chr4D 86.765 204 19 5 38 233 108046860 108047063 1.200000e-53 220.0
37 TraesCS7B01G407900 chr4D 80.913 241 36 5 1 232 12649027 12648788 5.640000e-42 182.0
38 TraesCS7B01G407900 chr2D 85.268 224 22 5 21 233 43276412 43276635 1.200000e-53 220.0
39 TraesCS7B01G407900 chr2D 87.037 108 11 2 236 340 315858988 315859095 4.490000e-23 119.0
40 TraesCS7B01G407900 chr3D 83.913 230 30 5 8 232 96210412 96210185 2.000000e-51 213.0
41 TraesCS7B01G407900 chr6D 83.761 234 25 7 4 226 62935524 62935293 2.590000e-50 209.0
42 TraesCS7B01G407900 chr1D 82.403 233 29 5 15 239 315545978 315545750 2.610000e-45 193.0
43 TraesCS7B01G407900 chr3A 87.611 113 10 4 236 345 732703607 732703496 7.460000e-26 128.0
44 TraesCS7B01G407900 chr3B 77.056 231 44 5 1 223 817467871 817467642 9.650000e-25 124.0
45 TraesCS7B01G407900 chr3B 86.111 108 12 3 236 340 118604543 118604436 2.090000e-21 113.0
46 TraesCS7B01G407900 chr2A 87.755 98 10 1 235 330 1305558 1305461 2.090000e-21 113.0
47 TraesCS7B01G407900 chr6B 87.629 97 9 3 458 553 509260664 509260570 2.700000e-20 110.0
48 TraesCS7B01G407900 chr4A 85.455 110 11 4 236 340 544404439 544404548 2.700000e-20 110.0
49 TraesCS7B01G407900 chr1B 84.685 111 14 2 233 340 127241260 127241150 9.720000e-20 108.0
50 TraesCS7B01G407900 chr1B 84.404 109 14 2 235 340 634014463 634014571 1.260000e-18 104.0
51 TraesCS7B01G407900 chr1B 85.714 98 11 3 457 553 669905339 669905434 1.630000e-17 100.0
52 TraesCS7B01G407900 chr5B 87.368 95 9 3 457 549 517900023 517900116 3.490000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G407900 chr7B 677303015 677305582 2567 False 4743.000000 4743 100.000000 1 2568 1 chr7B.!!$F3 2567
1 TraesCS7B01G407900 chr7B 677187969 677190361 2392 False 1309.500000 2013 89.026500 457 2568 2 chr7B.!!$F5 2111
2 TraesCS7B01G407900 chr7B 677356572 677357142 570 False 412.000000 412 80.560000 935 1475 1 chr7B.!!$F4 540
3 TraesCS7B01G407900 chr7A 690675771 690677038 1267 False 1531.000000 1531 88.846000 552 1806 1 chr7A.!!$F1 1254
4 TraesCS7B01G407900 chr7A 690786365 690787213 848 False 926.000000 926 86.374000 1708 2568 1 chr7A.!!$F4 860
5 TraesCS7B01G407900 chr7A 690703596 690704151 555 False 684.000000 684 88.792000 1798 2366 1 chr7A.!!$F2 568
6 TraesCS7B01G407900 chr7A 690775950 690777812 1862 False 512.000000 889 88.958667 458 1701 3 chr7A.!!$F6 1243
7 TraesCS7B01G407900 chr7A 690861061 690861578 517 False 239.000000 278 85.237000 982 1466 2 chr7A.!!$F7 484
8 TraesCS7B01G407900 chr7D 598294726 598296751 2025 False 770.666667 1480 91.943333 552 2393 3 chr7D.!!$F3 1841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.109412 GTATTCGGCCCGGACTATCG 60.109 60.0 0.73 0.00 0.0 2.92 F
165 166 0.250858 TATTCGGCCCGGACTATCGA 60.251 55.0 0.73 1.37 0.0 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 2623 0.654683 GATCAGGAATCACTGCACGC 59.345 55.000 0.0 0.0 38.36 5.34 R
1754 2823 2.055042 CCCGCTGCCTAGAGAGTGT 61.055 63.158 0.0 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.903764 GATGCATCAGTACAGCTCTAAAG 57.096 43.478 21.92 0.00 0.00 1.85
23 24 5.595885 GATGCATCAGTACAGCTCTAAAGA 58.404 41.667 21.92 0.00 0.00 2.52
24 25 5.604758 TGCATCAGTACAGCTCTAAAGAT 57.395 39.130 0.00 0.00 0.00 2.40
25 26 5.354767 TGCATCAGTACAGCTCTAAAGATG 58.645 41.667 9.48 9.48 44.61 2.90
26 27 4.749099 GCATCAGTACAGCTCTAAAGATGG 59.251 45.833 13.65 0.00 43.33 3.51
27 28 5.452496 GCATCAGTACAGCTCTAAAGATGGA 60.452 44.000 13.65 0.00 43.33 3.41
28 29 6.740960 GCATCAGTACAGCTCTAAAGATGGAT 60.741 42.308 13.65 0.00 43.33 3.41
29 30 6.398234 TCAGTACAGCTCTAAAGATGGATC 57.602 41.667 0.00 0.00 43.33 3.36
30 31 5.009110 TCAGTACAGCTCTAAAGATGGATCG 59.991 44.000 0.00 0.00 43.33 3.69
31 32 3.742433 ACAGCTCTAAAGATGGATCGG 57.258 47.619 0.00 0.00 43.33 4.18
32 33 3.034635 ACAGCTCTAAAGATGGATCGGT 58.965 45.455 0.00 0.00 43.33 4.69
33 34 3.181471 ACAGCTCTAAAGATGGATCGGTG 60.181 47.826 0.00 0.00 43.33 4.94
34 35 2.366916 AGCTCTAAAGATGGATCGGTGG 59.633 50.000 0.00 0.00 0.00 4.61
35 36 2.365617 GCTCTAAAGATGGATCGGTGGA 59.634 50.000 0.00 0.00 0.00 4.02
36 37 3.181465 GCTCTAAAGATGGATCGGTGGAA 60.181 47.826 0.00 0.00 0.00 3.53
37 38 4.626042 CTCTAAAGATGGATCGGTGGAAG 58.374 47.826 0.00 0.00 0.00 3.46
38 39 4.286707 TCTAAAGATGGATCGGTGGAAGA 58.713 43.478 0.00 0.00 0.00 2.87
39 40 2.990066 AAGATGGATCGGTGGAAGAC 57.010 50.000 0.00 0.00 0.00 3.01
40 41 0.747255 AGATGGATCGGTGGAAGACG 59.253 55.000 0.00 0.00 0.00 4.18
41 42 0.249489 GATGGATCGGTGGAAGACGG 60.249 60.000 0.00 0.00 0.00 4.79
42 43 0.976073 ATGGATCGGTGGAAGACGGT 60.976 55.000 0.00 0.00 0.00 4.83
43 44 1.153628 GGATCGGTGGAAGACGGTG 60.154 63.158 0.00 0.00 0.00 4.94
44 45 1.153628 GATCGGTGGAAGACGGTGG 60.154 63.158 0.00 0.00 0.00 4.61
45 46 3.310860 ATCGGTGGAAGACGGTGGC 62.311 63.158 0.00 0.00 0.00 5.01
48 49 4.309950 GTGGAAGACGGTGGCGGT 62.310 66.667 0.00 0.00 0.00 5.68
49 50 4.308458 TGGAAGACGGTGGCGGTG 62.308 66.667 0.00 0.00 0.00 4.94
61 62 3.386237 GCGGTGGCCTCTGAGAGT 61.386 66.667 17.90 0.00 0.00 3.24
62 63 2.575993 CGGTGGCCTCTGAGAGTG 59.424 66.667 7.96 1.26 0.00 3.51
63 64 2.267324 GGTGGCCTCTGAGAGTGC 59.733 66.667 8.88 11.05 0.00 4.40
64 65 2.289532 GGTGGCCTCTGAGAGTGCT 61.290 63.158 18.03 0.00 0.00 4.40
65 66 1.217779 GTGGCCTCTGAGAGTGCTC 59.782 63.158 18.03 11.27 41.67 4.26
66 67 1.986757 TGGCCTCTGAGAGTGCTCC 60.987 63.158 18.03 10.26 40.55 4.70
67 68 1.685421 GGCCTCTGAGAGTGCTCCT 60.685 63.158 18.03 0.00 40.55 3.69
68 69 1.516892 GCCTCTGAGAGTGCTCCTG 59.483 63.158 8.88 0.00 40.55 3.86
69 70 0.969917 GCCTCTGAGAGTGCTCCTGA 60.970 60.000 8.88 0.00 40.55 3.86
70 71 0.817013 CCTCTGAGAGTGCTCCTGAC 59.183 60.000 8.88 0.00 40.55 3.51
71 72 0.451383 CTCTGAGAGTGCTCCTGACG 59.549 60.000 0.16 0.00 40.55 4.35
72 73 0.962855 TCTGAGAGTGCTCCTGACGG 60.963 60.000 0.00 0.00 40.55 4.79
73 74 2.183046 GAGAGTGCTCCTGACGGC 59.817 66.667 0.00 0.00 35.01 5.68
74 75 3.363844 GAGAGTGCTCCTGACGGCC 62.364 68.421 0.00 0.00 35.01 6.13
75 76 4.459089 GAGTGCTCCTGACGGCCC 62.459 72.222 0.00 0.00 0.00 5.80
79 80 4.344865 GCTCCTGACGGCCCCAAA 62.345 66.667 0.00 0.00 0.00 3.28
80 81 2.359975 CTCCTGACGGCCCCAAAC 60.360 66.667 0.00 0.00 0.00 2.93
81 82 3.920093 CTCCTGACGGCCCCAAACC 62.920 68.421 0.00 0.00 0.00 3.27
89 90 4.081185 GCCCCAAACCCGGCAATG 62.081 66.667 0.00 0.00 45.01 2.82
90 91 2.603171 CCCCAAACCCGGCAATGT 60.603 61.111 0.00 0.00 0.00 2.71
91 92 2.656055 CCCAAACCCGGCAATGTG 59.344 61.111 0.00 0.00 0.00 3.21
92 93 2.656055 CCAAACCCGGCAATGTGG 59.344 61.111 0.00 0.00 0.00 4.17
93 94 2.048316 CAAACCCGGCAATGTGGC 60.048 61.111 0.00 0.00 39.85 5.01
94 95 2.203625 AAACCCGGCAATGTGGCT 60.204 55.556 0.00 0.00 41.25 4.75
95 96 1.836604 AAACCCGGCAATGTGGCTT 60.837 52.632 0.00 0.00 41.25 4.35
96 97 2.098426 AAACCCGGCAATGTGGCTTG 62.098 55.000 0.00 0.00 41.25 4.01
97 98 3.762247 CCCGGCAATGTGGCTTGG 61.762 66.667 0.00 0.00 41.25 3.61
98 99 2.990967 CCGGCAATGTGGCTTGGT 60.991 61.111 0.00 0.00 41.25 3.67
99 100 2.573083 CCGGCAATGTGGCTTGGTT 61.573 57.895 0.00 0.00 41.25 3.67
100 101 1.373246 CGGCAATGTGGCTTGGTTG 60.373 57.895 0.09 0.00 41.25 3.77
101 102 1.004679 GGCAATGTGGCTTGGTTGG 60.005 57.895 0.00 0.00 40.14 3.77
102 103 1.004679 GCAATGTGGCTTGGTTGGG 60.005 57.895 0.00 0.00 0.00 4.12
103 104 1.672898 CAATGTGGCTTGGTTGGGG 59.327 57.895 0.00 0.00 0.00 4.96
104 105 2.216331 AATGTGGCTTGGTTGGGGC 61.216 57.895 0.00 0.00 0.00 5.80
105 106 4.932105 TGTGGCTTGGTTGGGGCC 62.932 66.667 0.00 0.00 45.45 5.80
106 107 4.621087 GTGGCTTGGTTGGGGCCT 62.621 66.667 0.84 0.00 45.45 5.19
107 108 4.299796 TGGCTTGGTTGGGGCCTC 62.300 66.667 0.84 0.00 45.45 4.70
110 111 4.740822 CTTGGTTGGGGCCTCCGG 62.741 72.222 0.00 0.00 38.76 5.14
113 114 4.295199 GGTTGGGGCCTCCGGTTT 62.295 66.667 0.00 0.00 38.76 3.27
114 115 2.203582 GTTGGGGCCTCCGGTTTT 60.204 61.111 0.00 0.00 38.76 2.43
115 116 1.835267 GTTGGGGCCTCCGGTTTTT 60.835 57.895 0.00 0.00 38.76 1.94
136 137 7.921786 TTTTTATGTTAGATCTGGTGTGAGG 57.078 36.000 5.18 0.00 0.00 3.86
137 138 6.620877 TTTATGTTAGATCTGGTGTGAGGT 57.379 37.500 5.18 0.00 0.00 3.85
138 139 4.744795 ATGTTAGATCTGGTGTGAGGTC 57.255 45.455 5.18 0.00 0.00 3.85
139 140 3.779444 TGTTAGATCTGGTGTGAGGTCT 58.221 45.455 5.18 0.00 37.24 3.85
140 141 3.511540 TGTTAGATCTGGTGTGAGGTCTG 59.488 47.826 5.18 0.00 34.17 3.51
141 142 2.317371 AGATCTGGTGTGAGGTCTGT 57.683 50.000 0.00 0.00 31.84 3.41
142 143 2.614259 AGATCTGGTGTGAGGTCTGTT 58.386 47.619 0.00 0.00 31.84 3.16
143 144 2.975489 AGATCTGGTGTGAGGTCTGTTT 59.025 45.455 0.00 0.00 31.84 2.83
144 145 2.620251 TCTGGTGTGAGGTCTGTTTG 57.380 50.000 0.00 0.00 0.00 2.93
145 146 1.140852 TCTGGTGTGAGGTCTGTTTGG 59.859 52.381 0.00 0.00 0.00 3.28
146 147 0.916086 TGGTGTGAGGTCTGTTTGGT 59.084 50.000 0.00 0.00 0.00 3.67
147 148 2.104111 CTGGTGTGAGGTCTGTTTGGTA 59.896 50.000 0.00 0.00 0.00 3.25
148 149 2.708861 TGGTGTGAGGTCTGTTTGGTAT 59.291 45.455 0.00 0.00 0.00 2.73
149 150 3.137544 TGGTGTGAGGTCTGTTTGGTATT 59.862 43.478 0.00 0.00 0.00 1.89
150 151 3.751698 GGTGTGAGGTCTGTTTGGTATTC 59.248 47.826 0.00 0.00 0.00 1.75
151 152 3.432252 GTGTGAGGTCTGTTTGGTATTCG 59.568 47.826 0.00 0.00 0.00 3.34
152 153 3.000727 GTGAGGTCTGTTTGGTATTCGG 58.999 50.000 0.00 0.00 0.00 4.30
153 154 2.007608 GAGGTCTGTTTGGTATTCGGC 58.992 52.381 0.00 0.00 0.00 5.54
154 155 1.092348 GGTCTGTTTGGTATTCGGCC 58.908 55.000 0.00 0.00 0.00 6.13
155 156 1.092348 GTCTGTTTGGTATTCGGCCC 58.908 55.000 0.00 0.00 0.00 5.80
156 157 0.391927 TCTGTTTGGTATTCGGCCCG 60.392 55.000 0.00 0.00 0.00 6.13
157 158 1.373590 CTGTTTGGTATTCGGCCCGG 61.374 60.000 1.90 0.00 0.00 5.73
158 159 1.078285 GTTTGGTATTCGGCCCGGA 60.078 57.895 0.73 0.00 0.00 5.14
159 160 1.078285 TTTGGTATTCGGCCCGGAC 60.078 57.895 0.73 0.00 0.00 4.79
160 161 1.555477 TTTGGTATTCGGCCCGGACT 61.555 55.000 0.73 0.00 0.00 3.85
161 162 0.687098 TTGGTATTCGGCCCGGACTA 60.687 55.000 0.73 0.00 0.00 2.59
162 163 0.470456 TGGTATTCGGCCCGGACTAT 60.470 55.000 0.73 0.00 0.00 2.12
163 164 0.245813 GGTATTCGGCCCGGACTATC 59.754 60.000 0.73 0.00 0.00 2.08
164 165 0.109412 GTATTCGGCCCGGACTATCG 60.109 60.000 0.73 0.00 0.00 2.92
165 166 0.250858 TATTCGGCCCGGACTATCGA 60.251 55.000 0.73 1.37 0.00 3.59
166 167 1.803366 ATTCGGCCCGGACTATCGAC 61.803 60.000 0.73 0.00 0.00 4.20
167 168 3.214123 CGGCCCGGACTATCGACA 61.214 66.667 0.73 0.00 0.00 4.35
168 169 2.416260 GGCCCGGACTATCGACAC 59.584 66.667 0.73 0.00 0.00 3.67
169 170 2.416260 GCCCGGACTATCGACACC 59.584 66.667 0.73 0.00 0.00 4.16
170 171 3.126528 CCCGGACTATCGACACCC 58.873 66.667 0.73 0.00 0.00 4.61
171 172 2.496291 CCCGGACTATCGACACCCC 61.496 68.421 0.73 0.00 0.00 4.95
172 173 1.455217 CCGGACTATCGACACCCCT 60.455 63.158 0.00 0.00 0.00 4.79
173 174 1.041447 CCGGACTATCGACACCCCTT 61.041 60.000 0.00 0.00 0.00 3.95
174 175 0.384669 CGGACTATCGACACCCCTTC 59.615 60.000 0.00 0.00 0.00 3.46
175 176 1.481871 GGACTATCGACACCCCTTCA 58.518 55.000 0.00 0.00 0.00 3.02
176 177 2.040178 GGACTATCGACACCCCTTCAT 58.960 52.381 0.00 0.00 0.00 2.57
177 178 2.036089 GGACTATCGACACCCCTTCATC 59.964 54.545 0.00 0.00 0.00 2.92
178 179 2.693591 GACTATCGACACCCCTTCATCA 59.306 50.000 0.00 0.00 0.00 3.07
179 180 3.104512 ACTATCGACACCCCTTCATCAA 58.895 45.455 0.00 0.00 0.00 2.57
180 181 2.698855 ATCGACACCCCTTCATCAAG 57.301 50.000 0.00 0.00 0.00 3.02
181 182 1.348064 TCGACACCCCTTCATCAAGT 58.652 50.000 0.00 0.00 0.00 3.16
182 183 1.001974 TCGACACCCCTTCATCAAGTG 59.998 52.381 0.00 0.00 34.61 3.16
183 184 1.826385 GACACCCCTTCATCAAGTGG 58.174 55.000 0.00 0.00 33.46 4.00
184 185 1.351017 GACACCCCTTCATCAAGTGGA 59.649 52.381 0.00 0.00 31.72 4.02
185 186 1.995542 ACACCCCTTCATCAAGTGGAT 59.004 47.619 0.00 0.00 31.72 3.41
186 187 3.189606 ACACCCCTTCATCAAGTGGATA 58.810 45.455 0.00 0.00 31.72 2.59
187 188 3.200825 ACACCCCTTCATCAAGTGGATAG 59.799 47.826 0.00 0.00 31.72 2.08
188 189 2.780010 ACCCCTTCATCAAGTGGATAGG 59.220 50.000 0.00 0.00 31.72 2.57
189 190 3.048600 CCCCTTCATCAAGTGGATAGGA 58.951 50.000 0.00 0.00 33.95 2.94
190 191 3.072184 CCCCTTCATCAAGTGGATAGGAG 59.928 52.174 0.00 0.00 33.95 3.69
191 192 3.713764 CCCTTCATCAAGTGGATAGGAGT 59.286 47.826 0.00 0.00 33.95 3.85
192 193 4.901849 CCCTTCATCAAGTGGATAGGAGTA 59.098 45.833 0.00 0.00 33.95 2.59
193 194 5.011533 CCCTTCATCAAGTGGATAGGAGTAG 59.988 48.000 0.00 0.00 33.95 2.57
194 195 5.510520 CCTTCATCAAGTGGATAGGAGTAGC 60.511 48.000 0.00 0.00 33.95 3.58
195 196 3.570125 TCATCAAGTGGATAGGAGTAGCG 59.430 47.826 0.00 0.00 33.95 4.26
196 197 3.292492 TCAAGTGGATAGGAGTAGCGA 57.708 47.619 0.00 0.00 0.00 4.93
197 198 2.950309 TCAAGTGGATAGGAGTAGCGAC 59.050 50.000 0.00 0.00 0.00 5.19
198 199 2.688446 CAAGTGGATAGGAGTAGCGACA 59.312 50.000 0.00 0.00 0.00 4.35
199 200 2.577700 AGTGGATAGGAGTAGCGACAG 58.422 52.381 0.00 0.00 0.00 3.51
200 201 2.172930 AGTGGATAGGAGTAGCGACAGA 59.827 50.000 0.00 0.00 0.00 3.41
201 202 3.150767 GTGGATAGGAGTAGCGACAGAT 58.849 50.000 0.00 0.00 0.00 2.90
202 203 3.057876 GTGGATAGGAGTAGCGACAGATG 60.058 52.174 0.00 0.00 0.00 2.90
203 204 3.150767 GGATAGGAGTAGCGACAGATGT 58.849 50.000 0.00 0.00 0.00 3.06
204 205 3.570550 GGATAGGAGTAGCGACAGATGTT 59.429 47.826 0.00 0.00 0.00 2.71
205 206 2.949451 AGGAGTAGCGACAGATGTTG 57.051 50.000 0.00 0.00 0.00 3.33
214 215 2.598589 CGACAGATGTTGCCAAAATGG 58.401 47.619 0.00 0.00 41.55 3.16
215 216 2.030007 CGACAGATGTTGCCAAAATGGT 60.030 45.455 0.00 0.00 40.46 3.55
216 217 3.319755 GACAGATGTTGCCAAAATGGTG 58.680 45.455 0.00 0.00 40.46 4.17
217 218 2.037511 ACAGATGTTGCCAAAATGGTGG 59.962 45.455 0.00 0.00 40.46 4.61
225 226 2.730550 CCAAAATGGTGGCTTCAGAC 57.269 50.000 0.00 0.00 31.35 3.51
226 227 1.068333 CCAAAATGGTGGCTTCAGACG 60.068 52.381 0.00 0.00 31.35 4.18
227 228 1.608590 CAAAATGGTGGCTTCAGACGT 59.391 47.619 0.00 0.00 0.00 4.34
228 229 2.811431 CAAAATGGTGGCTTCAGACGTA 59.189 45.455 0.00 0.00 0.00 3.57
229 230 2.094762 AATGGTGGCTTCAGACGTAC 57.905 50.000 0.00 0.00 0.00 3.67
230 231 1.267121 ATGGTGGCTTCAGACGTACT 58.733 50.000 0.00 0.00 0.00 2.73
231 232 0.317160 TGGTGGCTTCAGACGTACTG 59.683 55.000 8.24 8.24 46.97 2.74
243 244 4.075963 AGACGTACTGAGATACTCCCTC 57.924 50.000 0.00 0.00 0.00 4.30
244 245 3.140623 GACGTACTGAGATACTCCCTCC 58.859 54.545 0.00 0.00 0.00 4.30
245 246 2.144730 CGTACTGAGATACTCCCTCCG 58.855 57.143 0.00 0.00 0.00 4.63
246 247 2.485124 CGTACTGAGATACTCCCTCCGT 60.485 54.545 0.00 0.00 33.67 4.69
247 248 2.830651 ACTGAGATACTCCCTCCGTT 57.169 50.000 0.00 0.00 0.00 4.44
248 249 3.103080 ACTGAGATACTCCCTCCGTTT 57.897 47.619 0.00 0.00 0.00 3.60
249 250 3.442076 ACTGAGATACTCCCTCCGTTTT 58.558 45.455 0.00 0.00 0.00 2.43
250 251 3.838903 ACTGAGATACTCCCTCCGTTTTT 59.161 43.478 0.00 0.00 0.00 1.94
251 252 4.184629 CTGAGATACTCCCTCCGTTTTTG 58.815 47.826 0.00 0.00 0.00 2.44
252 253 3.581332 TGAGATACTCCCTCCGTTTTTGT 59.419 43.478 0.00 0.00 0.00 2.83
253 254 4.041198 TGAGATACTCCCTCCGTTTTTGTT 59.959 41.667 0.00 0.00 0.00 2.83
254 255 4.981812 AGATACTCCCTCCGTTTTTGTTT 58.018 39.130 0.00 0.00 0.00 2.83
255 256 6.117975 AGATACTCCCTCCGTTTTTGTTTA 57.882 37.500 0.00 0.00 0.00 2.01
256 257 5.936372 AGATACTCCCTCCGTTTTTGTTTAC 59.064 40.000 0.00 0.00 0.00 2.01
257 258 4.160642 ACTCCCTCCGTTTTTGTTTACT 57.839 40.909 0.00 0.00 0.00 2.24
258 259 4.132336 ACTCCCTCCGTTTTTGTTTACTC 58.868 43.478 0.00 0.00 0.00 2.59
259 260 4.141551 ACTCCCTCCGTTTTTGTTTACTCT 60.142 41.667 0.00 0.00 0.00 3.24
260 261 5.070847 ACTCCCTCCGTTTTTGTTTACTCTA 59.929 40.000 0.00 0.00 0.00 2.43
261 262 5.299949 TCCCTCCGTTTTTGTTTACTCTAC 58.700 41.667 0.00 0.00 0.00 2.59
262 263 4.151157 CCCTCCGTTTTTGTTTACTCTACG 59.849 45.833 0.00 0.00 0.00 3.51
263 264 4.746611 CCTCCGTTTTTGTTTACTCTACGT 59.253 41.667 0.00 0.00 0.00 3.57
264 265 5.920273 CCTCCGTTTTTGTTTACTCTACGTA 59.080 40.000 0.00 0.00 0.00 3.57
265 266 6.129088 CCTCCGTTTTTGTTTACTCTACGTAC 60.129 42.308 0.00 0.00 0.00 3.67
266 267 6.503524 TCCGTTTTTGTTTACTCTACGTACT 58.496 36.000 0.00 0.00 0.00 2.73
267 268 7.644490 TCCGTTTTTGTTTACTCTACGTACTA 58.356 34.615 0.00 0.00 0.00 1.82
268 269 7.803189 TCCGTTTTTGTTTACTCTACGTACTAG 59.197 37.037 0.00 0.00 0.00 2.57
269 270 7.803189 CCGTTTTTGTTTACTCTACGTACTAGA 59.197 37.037 0.00 0.00 0.00 2.43
281 282 8.477984 CTCTACGTACTAGAGTTGACTAAAGT 57.522 38.462 15.64 4.06 42.68 2.66
282 283 8.472683 TCTACGTACTAGAGTTGACTAAAGTC 57.527 38.462 0.00 3.08 44.97 3.01
410 411 9.816354 ATAAATGTTGTCAAACTTTACAAAGCT 57.184 25.926 1.60 0.00 39.63 3.74
411 412 8.546597 AAATGTTGTCAAACTTTACAAAGCTT 57.453 26.923 0.00 0.00 39.63 3.74
412 413 6.942886 TGTTGTCAAACTTTACAAAGCTTG 57.057 33.333 0.00 10.28 41.23 4.01
413 414 6.682746 TGTTGTCAAACTTTACAAAGCTTGA 58.317 32.000 13.75 13.75 44.35 3.02
417 418 6.524101 TCAAACTTTACAAAGCTTGACCTT 57.476 33.333 13.75 0.00 42.74 3.50
418 419 6.930731 TCAAACTTTACAAAGCTTGACCTTT 58.069 32.000 13.75 0.00 42.74 3.11
427 428 4.837896 AAGCTTGACCTTTGACTAAAGC 57.162 40.909 0.00 0.00 41.55 3.51
428 429 4.092116 AGCTTGACCTTTGACTAAAGCT 57.908 40.909 2.03 2.03 44.03 3.74
429 430 5.228945 AGCTTGACCTTTGACTAAAGCTA 57.771 39.130 5.95 0.00 46.23 3.32
430 431 5.621193 AGCTTGACCTTTGACTAAAGCTAA 58.379 37.500 5.95 0.00 46.23 3.09
431 432 6.241645 AGCTTGACCTTTGACTAAAGCTAAT 58.758 36.000 5.95 0.00 46.23 1.73
432 433 7.394816 AGCTTGACCTTTGACTAAAGCTAATA 58.605 34.615 5.95 0.00 46.23 0.98
433 434 7.334671 AGCTTGACCTTTGACTAAAGCTAATAC 59.665 37.037 5.95 0.00 46.23 1.89
434 435 7.119262 GCTTGACCTTTGACTAAAGCTAATACA 59.881 37.037 0.00 0.00 41.55 2.29
435 436 7.900782 TGACCTTTGACTAAAGCTAATACAC 57.099 36.000 0.00 0.00 41.55 2.90
436 437 7.446769 TGACCTTTGACTAAAGCTAATACACA 58.553 34.615 0.00 0.00 41.55 3.72
437 438 7.934665 TGACCTTTGACTAAAGCTAATACACAA 59.065 33.333 0.00 0.00 41.55 3.33
438 439 8.685838 ACCTTTGACTAAAGCTAATACACAAA 57.314 30.769 0.00 0.00 41.55 2.83
439 440 8.565416 ACCTTTGACTAAAGCTAATACACAAAC 58.435 33.333 0.00 0.00 41.55 2.93
440 441 8.784043 CCTTTGACTAAAGCTAATACACAAACT 58.216 33.333 0.00 0.00 41.55 2.66
473 474 7.686434 AGAAGGTAGTATTACTTTGAAAGGCA 58.314 34.615 10.02 0.00 30.14 4.75
477 478 9.309224 AGGTAGTATTACTTTGAAAGGCATTTT 57.691 29.630 10.02 0.00 0.00 1.82
509 510 5.772825 AATAAAATGGCTACATGCATCGT 57.227 34.783 0.00 1.32 45.15 3.73
524 525 0.529337 ATCGTCCAGATGCAGAAGCG 60.529 55.000 0.00 0.00 46.23 4.68
529 530 2.688666 AGATGCAGAAGCGGGGGA 60.689 61.111 0.00 0.00 46.23 4.81
530 531 2.272146 GATGCAGAAGCGGGGGAA 59.728 61.111 0.00 0.00 46.23 3.97
544 548 2.971901 GGGGAAGTTCCTCCTTTTCA 57.028 50.000 21.25 0.00 36.57 2.69
549 553 5.453339 GGGGAAGTTCCTCCTTTTCAAAAAG 60.453 44.000 21.25 8.02 39.77 2.27
561 566 5.241728 CCTTTTCAAAAAGAATCTCGGGTCT 59.758 40.000 15.15 0.00 46.39 3.85
618 631 5.295045 CGACAAGACATCATCATCATGGAAA 59.705 40.000 0.00 0.00 0.00 3.13
656 674 1.986575 GCAGGGAAGAATGTGCTCGC 61.987 60.000 0.00 0.00 32.97 5.03
677 695 2.481104 CCGGTCGCAATTAAATGCCATT 60.481 45.455 9.88 0.00 43.47 3.16
691 709 2.857592 GCCATTAGCATGTGGTTCTG 57.142 50.000 2.37 0.00 42.97 3.02
779 797 6.963242 CCAACATCAACAGTAAAGATCATTCG 59.037 38.462 0.00 0.00 0.00 3.34
801 827 5.010415 TCGTGCATGAGTGAGAGATTATGAT 59.990 40.000 3.97 0.00 0.00 2.45
841 1179 4.741321 ATGGCACCATGTTGAATTAAGG 57.259 40.909 0.16 0.00 35.03 2.69
948 1287 8.971073 ACATCATATCATCCATCGACATTACTA 58.029 33.333 0.00 0.00 0.00 1.82
972 1586 3.324846 TCACAGCAAGTACATCCTGTCTT 59.675 43.478 8.71 0.00 36.47 3.01
1006 1622 4.942761 AGAACAGAAACAACCATGCAAT 57.057 36.364 0.00 0.00 0.00 3.56
1041 1657 0.538057 CCAAGTCCTTCAAGCAGGCA 60.538 55.000 0.00 0.00 33.35 4.75
1098 1714 0.812412 CACACCCGAACACGTCCTTT 60.812 55.000 0.00 0.00 0.00 3.11
1106 1725 3.726517 CACGTCCTTTGGCGGCAG 61.727 66.667 12.87 0.69 0.00 4.85
1151 1770 2.571216 CCGTCAAGTCCTCCGTGGT 61.571 63.158 0.00 0.00 37.07 4.16
1176 1795 2.835701 CTATGGCGACTGCACACGGT 62.836 60.000 9.30 0.00 45.35 4.83
1238 1857 0.898320 AGAGCGTGCAAGGTACAGAT 59.102 50.000 3.82 0.00 0.00 2.90
1556 2622 1.407979 ACTAATAGGTCGCTCAACGGG 59.592 52.381 0.00 0.00 43.89 5.28
1557 2623 0.748450 TAATAGGTCGCTCAACGGGG 59.252 55.000 0.00 0.00 43.89 5.73
1574 2640 1.375908 GGCGTGCAGTGATTCCTGA 60.376 57.895 0.00 0.00 34.23 3.86
1579 2645 3.005554 CGTGCAGTGATTCCTGATCTTT 58.994 45.455 0.00 0.00 35.69 2.52
1584 2650 4.937620 GCAGTGATTCCTGATCTTTGTGTA 59.062 41.667 0.00 0.00 35.69 2.90
1620 2689 9.971922 AAAAAGAGGCATTATTTAGTATGATGC 57.028 29.630 6.09 6.09 41.67 3.91
1665 2734 5.451798 GCAAAAAGAAAGACATGGTCTCCAA 60.452 40.000 0.00 0.00 42.59 3.53
1733 2802 3.073062 TCTCTTGTTCTTTTGGGAGGAGG 59.927 47.826 0.00 0.00 0.00 4.30
1777 2846 3.075005 TCTAGGCAGCGGGACACC 61.075 66.667 0.00 0.00 0.00 4.16
1832 2901 3.479269 GCCGTCAACTCGCTTCGG 61.479 66.667 0.00 0.00 43.37 4.30
1881 2950 2.841881 ACGAGCCTTTGTATCCCCTTTA 59.158 45.455 0.00 0.00 0.00 1.85
1932 3001 1.429930 TAACTCCACCAAGCAGACCA 58.570 50.000 0.00 0.00 0.00 4.02
1965 3035 6.054941 TCTTCTCTGCATTTGACTTGTTGTA 58.945 36.000 0.00 0.00 0.00 2.41
1967 3037 7.877612 TCTTCTCTGCATTTGACTTGTTGTATA 59.122 33.333 0.00 0.00 0.00 1.47
1996 3068 5.070685 GGTGCTTTATCTATAAAGTGGGGG 58.929 45.833 18.85 0.51 46.78 5.40
2127 3201 9.805204 ATATCCCTCACCATATTTAGGTATTCT 57.195 33.333 0.00 0.00 37.23 2.40
2226 3300 6.681729 AGATAAGACAGTCTTACCAACCAA 57.318 37.500 22.86 3.11 41.27 3.67
2235 3309 7.509546 ACAGTCTTACCAACCAATATAGATGG 58.490 38.462 5.93 5.93 43.84 3.51
2314 3388 5.768980 TCATCCTTAGATCCCAATCATCC 57.231 43.478 0.00 0.00 34.07 3.51
2320 3394 5.307976 CCTTAGATCCCAATCATCCTGTGTA 59.692 44.000 0.00 0.00 34.07 2.90
2352 3426 2.551071 GCTCCCATCTACCATGGTTAGC 60.551 54.545 25.38 15.75 38.35 3.09
2384 3458 5.715753 AGATAACGAGGAGTGGACTAAAAGT 59.284 40.000 0.00 0.00 0.00 2.66
2386 3460 2.963782 ACGAGGAGTGGACTAAAAGTGT 59.036 45.455 0.00 0.00 0.00 3.55
2424 3498 0.459237 CTCAAGTGAGCTAGCCACCG 60.459 60.000 24.12 18.29 35.13 4.94
2426 3500 0.737715 CAAGTGAGCTAGCCACCGTC 60.738 60.000 24.12 11.99 35.23 4.79
2479 3553 6.808829 TCGGTACTACTCTTTTGAAGTCAAA 58.191 36.000 2.32 2.32 43.36 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.595885 TCTTTAGAGCTGTACTGATGCATC 58.404 41.667 20.14 20.14 0.00 3.91
1 2 5.604758 TCTTTAGAGCTGTACTGATGCAT 57.395 39.130 0.00 0.00 0.00 3.96
3 4 4.749099 CCATCTTTAGAGCTGTACTGATGC 59.251 45.833 18.85 0.00 31.60 3.91
4 5 6.154203 TCCATCTTTAGAGCTGTACTGATG 57.846 41.667 17.97 17.97 0.00 3.07
5 6 6.294453 CGATCCATCTTTAGAGCTGTACTGAT 60.294 42.308 3.61 0.00 0.00 2.90
7 8 5.218885 CGATCCATCTTTAGAGCTGTACTG 58.781 45.833 0.00 0.00 0.00 2.74
8 9 4.279671 CCGATCCATCTTTAGAGCTGTACT 59.720 45.833 0.00 0.00 0.00 2.73
9 10 4.038162 ACCGATCCATCTTTAGAGCTGTAC 59.962 45.833 0.00 0.00 0.00 2.90
10 11 4.038042 CACCGATCCATCTTTAGAGCTGTA 59.962 45.833 0.00 0.00 0.00 2.74
11 12 3.034635 ACCGATCCATCTTTAGAGCTGT 58.965 45.455 0.00 0.00 0.00 4.40
12 13 3.388308 CACCGATCCATCTTTAGAGCTG 58.612 50.000 0.00 0.00 0.00 4.24
13 14 2.366916 CCACCGATCCATCTTTAGAGCT 59.633 50.000 0.00 0.00 0.00 4.09
14 15 2.365617 TCCACCGATCCATCTTTAGAGC 59.634 50.000 0.00 0.00 0.00 4.09
15 16 4.342378 TCTTCCACCGATCCATCTTTAGAG 59.658 45.833 0.00 0.00 0.00 2.43
16 17 4.099573 GTCTTCCACCGATCCATCTTTAGA 59.900 45.833 0.00 0.00 0.00 2.10
17 18 4.372656 GTCTTCCACCGATCCATCTTTAG 58.627 47.826 0.00 0.00 0.00 1.85
18 19 3.181479 CGTCTTCCACCGATCCATCTTTA 60.181 47.826 0.00 0.00 0.00 1.85
19 20 2.418746 CGTCTTCCACCGATCCATCTTT 60.419 50.000 0.00 0.00 0.00 2.52
20 21 1.137086 CGTCTTCCACCGATCCATCTT 59.863 52.381 0.00 0.00 0.00 2.40
21 22 0.747255 CGTCTTCCACCGATCCATCT 59.253 55.000 0.00 0.00 0.00 2.90
22 23 0.249489 CCGTCTTCCACCGATCCATC 60.249 60.000 0.00 0.00 0.00 3.51
23 24 0.976073 ACCGTCTTCCACCGATCCAT 60.976 55.000 0.00 0.00 0.00 3.41
24 25 1.608336 ACCGTCTTCCACCGATCCA 60.608 57.895 0.00 0.00 0.00 3.41
25 26 1.153628 CACCGTCTTCCACCGATCC 60.154 63.158 0.00 0.00 0.00 3.36
26 27 1.153628 CCACCGTCTTCCACCGATC 60.154 63.158 0.00 0.00 0.00 3.69
27 28 2.978824 CCACCGTCTTCCACCGAT 59.021 61.111 0.00 0.00 0.00 4.18
28 29 3.998672 GCCACCGTCTTCCACCGA 61.999 66.667 0.00 0.00 0.00 4.69
31 32 4.309950 ACCGCCACCGTCTTCCAC 62.310 66.667 0.00 0.00 0.00 4.02
32 33 4.308458 CACCGCCACCGTCTTCCA 62.308 66.667 0.00 0.00 0.00 3.53
44 45 3.386237 ACTCTCAGAGGCCACCGC 61.386 66.667 5.01 0.00 33.35 5.68
45 46 2.575993 CACTCTCAGAGGCCACCG 59.424 66.667 5.01 0.00 33.35 4.94
46 47 2.237534 GAGCACTCTCAGAGGCCACC 62.238 65.000 5.01 0.00 39.16 4.61
47 48 1.217779 GAGCACTCTCAGAGGCCAC 59.782 63.158 5.01 0.00 39.16 5.01
48 49 1.986757 GGAGCACTCTCAGAGGCCA 60.987 63.158 5.01 0.00 41.13 5.36
49 50 1.685421 AGGAGCACTCTCAGAGGCC 60.685 63.158 6.64 0.00 41.13 5.19
50 51 0.969917 TCAGGAGCACTCTCAGAGGC 60.970 60.000 6.64 6.83 41.13 4.70
51 52 0.817013 GTCAGGAGCACTCTCAGAGG 59.183 60.000 6.64 0.00 41.13 3.69
52 53 0.451383 CGTCAGGAGCACTCTCAGAG 59.549 60.000 0.00 0.00 41.13 3.35
53 54 0.962855 CCGTCAGGAGCACTCTCAGA 60.963 60.000 0.00 0.00 41.13 3.27
54 55 1.510383 CCGTCAGGAGCACTCTCAG 59.490 63.158 0.00 0.00 41.13 3.35
55 56 2.640302 GCCGTCAGGAGCACTCTCA 61.640 63.158 0.00 0.00 41.13 3.27
56 57 2.183046 GCCGTCAGGAGCACTCTC 59.817 66.667 0.00 0.00 41.02 3.20
57 58 3.386237 GGCCGTCAGGAGCACTCT 61.386 66.667 0.00 0.00 41.02 3.24
58 59 4.459089 GGGCCGTCAGGAGCACTC 62.459 72.222 0.00 0.00 41.02 3.51
62 63 4.344865 TTTGGGGCCGTCAGGAGC 62.345 66.667 0.00 0.00 41.02 4.70
63 64 2.359975 GTTTGGGGCCGTCAGGAG 60.360 66.667 0.00 0.00 41.02 3.69
64 65 3.961414 GGTTTGGGGCCGTCAGGA 61.961 66.667 0.00 0.00 41.02 3.86
73 74 2.603171 ACATTGCCGGGTTTGGGG 60.603 61.111 2.18 0.00 0.00 4.96
74 75 2.656055 CACATTGCCGGGTTTGGG 59.344 61.111 2.18 0.00 0.00 4.12
75 76 2.656055 CCACATTGCCGGGTTTGG 59.344 61.111 2.18 0.00 0.00 3.28
76 77 2.048316 GCCACATTGCCGGGTTTG 60.048 61.111 2.18 0.00 0.00 2.93
77 78 1.836604 AAGCCACATTGCCGGGTTT 60.837 52.632 2.18 0.00 39.97 3.27
78 79 2.203625 AAGCCACATTGCCGGGTT 60.204 55.556 2.18 4.73 38.16 4.11
79 80 2.990967 CAAGCCACATTGCCGGGT 60.991 61.111 2.18 0.00 33.45 5.28
80 81 3.762247 CCAAGCCACATTGCCGGG 61.762 66.667 2.18 0.00 0.00 5.73
81 82 2.573083 AACCAAGCCACATTGCCGG 61.573 57.895 0.00 0.00 0.00 6.13
82 83 1.373246 CAACCAAGCCACATTGCCG 60.373 57.895 0.00 0.00 0.00 5.69
83 84 1.004679 CCAACCAAGCCACATTGCC 60.005 57.895 0.00 0.00 0.00 4.52
84 85 1.004679 CCCAACCAAGCCACATTGC 60.005 57.895 0.00 0.00 0.00 3.56
85 86 1.672898 CCCCAACCAAGCCACATTG 59.327 57.895 0.00 0.00 0.00 2.82
86 87 2.216331 GCCCCAACCAAGCCACATT 61.216 57.895 0.00 0.00 0.00 2.71
87 88 2.604382 GCCCCAACCAAGCCACAT 60.604 61.111 0.00 0.00 0.00 3.21
88 89 4.932105 GGCCCCAACCAAGCCACA 62.932 66.667 0.00 0.00 46.34 4.17
93 94 4.740822 CCGGAGGCCCCAACCAAG 62.741 72.222 0.00 0.00 46.14 3.61
112 113 7.458397 ACCTCACACCAGATCTAACATAAAAA 58.542 34.615 0.00 0.00 0.00 1.94
113 114 7.016153 ACCTCACACCAGATCTAACATAAAA 57.984 36.000 0.00 0.00 0.00 1.52
114 115 6.440647 AGACCTCACACCAGATCTAACATAAA 59.559 38.462 0.00 0.00 0.00 1.40
115 116 5.958380 AGACCTCACACCAGATCTAACATAA 59.042 40.000 0.00 0.00 0.00 1.90
116 117 5.360999 CAGACCTCACACCAGATCTAACATA 59.639 44.000 0.00 0.00 0.00 2.29
117 118 4.161189 CAGACCTCACACCAGATCTAACAT 59.839 45.833 0.00 0.00 0.00 2.71
118 119 3.511540 CAGACCTCACACCAGATCTAACA 59.488 47.826 0.00 0.00 0.00 2.41
119 120 3.511934 ACAGACCTCACACCAGATCTAAC 59.488 47.826 0.00 0.00 0.00 2.34
120 121 3.779444 ACAGACCTCACACCAGATCTAA 58.221 45.455 0.00 0.00 0.00 2.10
121 122 3.458044 ACAGACCTCACACCAGATCTA 57.542 47.619 0.00 0.00 0.00 1.98
122 123 2.317371 ACAGACCTCACACCAGATCT 57.683 50.000 0.00 0.00 0.00 2.75
123 124 3.070018 CAAACAGACCTCACACCAGATC 58.930 50.000 0.00 0.00 0.00 2.75
124 125 2.224621 CCAAACAGACCTCACACCAGAT 60.225 50.000 0.00 0.00 0.00 2.90
125 126 1.140852 CCAAACAGACCTCACACCAGA 59.859 52.381 0.00 0.00 0.00 3.86
126 127 1.134098 ACCAAACAGACCTCACACCAG 60.134 52.381 0.00 0.00 0.00 4.00
127 128 0.916086 ACCAAACAGACCTCACACCA 59.084 50.000 0.00 0.00 0.00 4.17
128 129 2.922740 TACCAAACAGACCTCACACC 57.077 50.000 0.00 0.00 0.00 4.16
129 130 3.432252 CGAATACCAAACAGACCTCACAC 59.568 47.826 0.00 0.00 0.00 3.82
130 131 3.556213 CCGAATACCAAACAGACCTCACA 60.556 47.826 0.00 0.00 0.00 3.58
131 132 3.000727 CCGAATACCAAACAGACCTCAC 58.999 50.000 0.00 0.00 0.00 3.51
132 133 2.614481 GCCGAATACCAAACAGACCTCA 60.614 50.000 0.00 0.00 0.00 3.86
133 134 2.007608 GCCGAATACCAAACAGACCTC 58.992 52.381 0.00 0.00 0.00 3.85
134 135 1.339727 GGCCGAATACCAAACAGACCT 60.340 52.381 0.00 0.00 0.00 3.85
135 136 1.092348 GGCCGAATACCAAACAGACC 58.908 55.000 0.00 0.00 0.00 3.85
136 137 1.092348 GGGCCGAATACCAAACAGAC 58.908 55.000 0.00 0.00 0.00 3.51
137 138 0.391927 CGGGCCGAATACCAAACAGA 60.392 55.000 24.41 0.00 0.00 3.41
138 139 1.373590 CCGGGCCGAATACCAAACAG 61.374 60.000 30.79 0.96 0.00 3.16
139 140 1.377463 CCGGGCCGAATACCAAACA 60.377 57.895 30.79 0.00 0.00 2.83
140 141 1.078285 TCCGGGCCGAATACCAAAC 60.078 57.895 30.79 0.00 0.00 2.93
141 142 1.078285 GTCCGGGCCGAATACCAAA 60.078 57.895 30.79 0.00 0.00 3.28
142 143 0.687098 TAGTCCGGGCCGAATACCAA 60.687 55.000 30.79 10.60 0.00 3.67
143 144 0.470456 ATAGTCCGGGCCGAATACCA 60.470 55.000 30.79 12.00 0.00 3.25
144 145 0.245813 GATAGTCCGGGCCGAATACC 59.754 60.000 30.79 9.81 0.00 2.73
145 146 0.109412 CGATAGTCCGGGCCGAATAC 60.109 60.000 30.79 21.53 0.00 1.89
146 147 0.250858 TCGATAGTCCGGGCCGAATA 60.251 55.000 30.79 17.08 37.40 1.75
147 148 1.529948 TCGATAGTCCGGGCCGAAT 60.530 57.895 30.79 15.33 37.40 3.34
148 149 2.124193 TCGATAGTCCGGGCCGAA 60.124 61.111 30.79 2.63 37.40 4.30
149 150 2.903855 GTCGATAGTCCGGGCCGA 60.904 66.667 30.79 11.12 37.40 5.54
150 151 3.214123 TGTCGATAGTCCGGGCCG 61.214 66.667 21.46 21.46 37.40 6.13
151 152 2.416260 GTGTCGATAGTCCGGGCC 59.584 66.667 0.08 0.00 37.40 5.80
152 153 2.416260 GGTGTCGATAGTCCGGGC 59.584 66.667 0.00 0.00 37.40 6.13
153 154 2.496291 GGGGTGTCGATAGTCCGGG 61.496 68.421 0.00 0.00 37.40 5.73
154 155 1.041447 AAGGGGTGTCGATAGTCCGG 61.041 60.000 0.00 0.00 37.40 5.14
155 156 0.384669 GAAGGGGTGTCGATAGTCCG 59.615 60.000 0.00 0.00 37.40 4.79
156 157 1.481871 TGAAGGGGTGTCGATAGTCC 58.518 55.000 0.00 0.00 37.40 3.85
157 158 2.693591 TGATGAAGGGGTGTCGATAGTC 59.306 50.000 0.00 0.00 37.40 2.59
158 159 2.747177 TGATGAAGGGGTGTCGATAGT 58.253 47.619 0.00 0.00 37.40 2.12
159 160 3.133003 ACTTGATGAAGGGGTGTCGATAG 59.867 47.826 0.00 0.00 32.95 2.08
160 161 3.104512 ACTTGATGAAGGGGTGTCGATA 58.895 45.455 0.00 0.00 32.95 2.92
161 162 1.909302 ACTTGATGAAGGGGTGTCGAT 59.091 47.619 0.00 0.00 32.95 3.59
162 163 1.001974 CACTTGATGAAGGGGTGTCGA 59.998 52.381 0.00 0.00 32.95 4.20
163 164 1.442769 CACTTGATGAAGGGGTGTCG 58.557 55.000 0.00 0.00 32.95 4.35
164 165 1.826385 CCACTTGATGAAGGGGTGTC 58.174 55.000 4.81 0.00 46.61 3.67
169 170 3.713764 ACTCCTATCCACTTGATGAAGGG 59.286 47.826 0.00 0.00 34.76 3.95
170 171 5.510520 GCTACTCCTATCCACTTGATGAAGG 60.511 48.000 0.00 0.00 34.76 3.46
171 172 5.537188 GCTACTCCTATCCACTTGATGAAG 58.463 45.833 0.00 0.00 34.76 3.02
172 173 4.038042 CGCTACTCCTATCCACTTGATGAA 59.962 45.833 0.00 0.00 34.76 2.57
173 174 3.570125 CGCTACTCCTATCCACTTGATGA 59.430 47.826 0.00 0.00 34.76 2.92
174 175 3.570125 TCGCTACTCCTATCCACTTGATG 59.430 47.826 0.00 0.00 34.76 3.07
175 176 3.570550 GTCGCTACTCCTATCCACTTGAT 59.429 47.826 0.00 0.00 37.49 2.57
176 177 2.950309 GTCGCTACTCCTATCCACTTGA 59.050 50.000 0.00 0.00 0.00 3.02
177 178 2.688446 TGTCGCTACTCCTATCCACTTG 59.312 50.000 0.00 0.00 0.00 3.16
178 179 2.952978 CTGTCGCTACTCCTATCCACTT 59.047 50.000 0.00 0.00 0.00 3.16
179 180 2.172930 TCTGTCGCTACTCCTATCCACT 59.827 50.000 0.00 0.00 0.00 4.00
180 181 2.573369 TCTGTCGCTACTCCTATCCAC 58.427 52.381 0.00 0.00 0.00 4.02
181 182 3.149981 CATCTGTCGCTACTCCTATCCA 58.850 50.000 0.00 0.00 0.00 3.41
182 183 3.150767 ACATCTGTCGCTACTCCTATCC 58.849 50.000 0.00 0.00 0.00 2.59
183 184 4.541779 CAACATCTGTCGCTACTCCTATC 58.458 47.826 0.00 0.00 0.00 2.08
184 185 3.243569 GCAACATCTGTCGCTACTCCTAT 60.244 47.826 0.00 0.00 0.00 2.57
185 186 2.099263 GCAACATCTGTCGCTACTCCTA 59.901 50.000 0.00 0.00 0.00 2.94
186 187 1.134965 GCAACATCTGTCGCTACTCCT 60.135 52.381 0.00 0.00 0.00 3.69
187 188 1.281899 GCAACATCTGTCGCTACTCC 58.718 55.000 0.00 0.00 0.00 3.85
188 189 1.281899 GGCAACATCTGTCGCTACTC 58.718 55.000 0.00 0.00 0.00 2.59
189 190 0.608130 TGGCAACATCTGTCGCTACT 59.392 50.000 0.00 0.00 46.17 2.57
190 191 3.137484 TGGCAACATCTGTCGCTAC 57.863 52.632 0.00 0.00 46.17 3.58
206 207 1.068333 CGTCTGAAGCCACCATTTTGG 60.068 52.381 0.00 0.00 45.02 3.28
207 208 1.608590 ACGTCTGAAGCCACCATTTTG 59.391 47.619 0.00 0.00 0.00 2.44
208 209 1.981256 ACGTCTGAAGCCACCATTTT 58.019 45.000 0.00 0.00 0.00 1.82
209 210 2.038557 AGTACGTCTGAAGCCACCATTT 59.961 45.455 0.00 0.00 0.00 2.32
210 211 1.623811 AGTACGTCTGAAGCCACCATT 59.376 47.619 0.00 0.00 0.00 3.16
211 212 1.066858 CAGTACGTCTGAAGCCACCAT 60.067 52.381 8.72 0.00 46.27 3.55
212 213 0.317160 CAGTACGTCTGAAGCCACCA 59.683 55.000 8.72 0.00 46.27 4.17
213 214 3.123674 CAGTACGTCTGAAGCCACC 57.876 57.895 8.72 0.00 46.27 4.61
221 222 3.810941 GAGGGAGTATCTCAGTACGTCTG 59.189 52.174 0.00 0.00 38.91 3.51
222 223 3.181452 GGAGGGAGTATCTCAGTACGTCT 60.181 52.174 0.00 0.00 38.91 4.18
223 224 3.140623 GGAGGGAGTATCTCAGTACGTC 58.859 54.545 0.00 0.00 38.91 4.34
224 225 2.485124 CGGAGGGAGTATCTCAGTACGT 60.485 54.545 0.00 0.00 38.91 3.57
225 226 2.144730 CGGAGGGAGTATCTCAGTACG 58.855 57.143 0.00 0.00 38.91 3.67
226 227 3.211718 ACGGAGGGAGTATCTCAGTAC 57.788 52.381 0.00 0.00 38.91 2.73
227 228 3.947612 AACGGAGGGAGTATCTCAGTA 57.052 47.619 0.00 0.00 38.91 2.74
228 229 2.830651 AACGGAGGGAGTATCTCAGT 57.169 50.000 0.00 0.00 38.91 3.41
229 230 4.184629 CAAAAACGGAGGGAGTATCTCAG 58.815 47.826 0.00 0.00 38.91 3.35
230 231 3.581332 ACAAAAACGGAGGGAGTATCTCA 59.419 43.478 0.00 0.00 38.91 3.27
231 232 4.203654 ACAAAAACGGAGGGAGTATCTC 57.796 45.455 0.00 0.00 33.92 2.75
232 233 4.635699 AACAAAAACGGAGGGAGTATCT 57.364 40.909 0.00 0.00 33.73 1.98
233 234 5.936372 AGTAAACAAAAACGGAGGGAGTATC 59.064 40.000 0.00 0.00 0.00 2.24
234 235 5.872963 AGTAAACAAAAACGGAGGGAGTAT 58.127 37.500 0.00 0.00 0.00 2.12
235 236 5.070847 AGAGTAAACAAAAACGGAGGGAGTA 59.929 40.000 0.00 0.00 0.00 2.59
236 237 4.132336 GAGTAAACAAAAACGGAGGGAGT 58.868 43.478 0.00 0.00 0.00 3.85
237 238 4.386711 AGAGTAAACAAAAACGGAGGGAG 58.613 43.478 0.00 0.00 0.00 4.30
238 239 4.426736 AGAGTAAACAAAAACGGAGGGA 57.573 40.909 0.00 0.00 0.00 4.20
239 240 4.151157 CGTAGAGTAAACAAAAACGGAGGG 59.849 45.833 0.00 0.00 0.00 4.30
240 241 4.746611 ACGTAGAGTAAACAAAAACGGAGG 59.253 41.667 0.00 0.00 33.44 4.30
241 242 5.895216 ACGTAGAGTAAACAAAAACGGAG 57.105 39.130 0.00 0.00 33.44 4.63
242 243 6.503524 AGTACGTAGAGTAAACAAAAACGGA 58.496 36.000 0.00 0.00 37.02 4.69
243 244 6.753897 AGTACGTAGAGTAAACAAAAACGG 57.246 37.500 0.00 0.00 37.02 4.44
244 245 8.713765 TCTAGTACGTAGAGTAAACAAAAACG 57.286 34.615 0.00 0.00 37.02 3.60
257 258 8.472683 GACTTTAGTCAACTCTAGTACGTAGA 57.527 38.462 0.00 0.00 44.18 2.59
384 385 9.816354 AGCTTTGTAAAGTTTGACAACATTTAT 57.184 25.926 0.00 0.00 38.28 1.40
385 386 9.646427 AAGCTTTGTAAAGTTTGACAACATTTA 57.354 25.926 5.78 0.00 37.92 1.40
386 387 8.546597 AAGCTTTGTAAAGTTTGACAACATTT 57.453 26.923 5.78 0.00 37.92 2.32
396 397 6.811665 GTCAAAGGTCAAGCTTTGTAAAGTTT 59.188 34.615 25.49 3.78 39.56 2.66
397 398 6.152831 AGTCAAAGGTCAAGCTTTGTAAAGTT 59.847 34.615 25.49 10.09 40.35 2.66
398 399 5.652452 AGTCAAAGGTCAAGCTTTGTAAAGT 59.348 36.000 25.49 12.73 40.35 2.66
399 400 6.136541 AGTCAAAGGTCAAGCTTTGTAAAG 57.863 37.500 25.49 8.09 40.35 1.85
400 401 7.633193 TTAGTCAAAGGTCAAGCTTTGTAAA 57.367 32.000 25.49 17.80 40.35 2.01
401 402 7.633193 TTTAGTCAAAGGTCAAGCTTTGTAA 57.367 32.000 25.49 17.88 40.35 2.41
402 403 6.238648 GCTTTAGTCAAAGGTCAAGCTTTGTA 60.239 38.462 25.49 14.26 41.33 2.41
403 404 5.450550 GCTTTAGTCAAAGGTCAAGCTTTGT 60.451 40.000 25.49 15.03 41.33 2.83
404 405 4.978580 GCTTTAGTCAAAGGTCAAGCTTTG 59.021 41.667 22.47 22.47 41.33 2.77
405 406 4.889995 AGCTTTAGTCAAAGGTCAAGCTTT 59.110 37.500 0.00 1.48 46.88 3.51
406 407 4.464947 AGCTTTAGTCAAAGGTCAAGCTT 58.535 39.130 0.00 0.00 46.88 3.74
407 408 4.092116 AGCTTTAGTCAAAGGTCAAGCT 57.908 40.909 0.00 0.00 46.88 3.74
408 409 5.941948 TTAGCTTTAGTCAAAGGTCAAGC 57.058 39.130 5.20 0.00 46.88 4.01
409 410 8.443937 GTGTATTAGCTTTAGTCAAAGGTCAAG 58.556 37.037 5.20 0.00 46.88 3.02
410 411 7.934665 TGTGTATTAGCTTTAGTCAAAGGTCAA 59.065 33.333 5.20 1.16 46.88 3.18
411 412 7.446769 TGTGTATTAGCTTTAGTCAAAGGTCA 58.553 34.615 5.20 0.00 46.88 4.02
412 413 7.900782 TGTGTATTAGCTTTAGTCAAAGGTC 57.099 36.000 5.20 0.00 46.88 3.85
414 415 8.784043 AGTTTGTGTATTAGCTTTAGTCAAAGG 58.216 33.333 0.00 0.00 41.33 3.11
431 432 9.895138 ACTACCTTCTTTTCTTTAGTTTGTGTA 57.105 29.630 0.00 0.00 0.00 2.90
432 433 8.803397 ACTACCTTCTTTTCTTTAGTTTGTGT 57.197 30.769 0.00 0.00 0.00 3.72
446 447 9.011095 GCCTTTCAAAGTAATACTACCTTCTTT 57.989 33.333 0.00 0.00 0.00 2.52
447 448 8.161425 TGCCTTTCAAAGTAATACTACCTTCTT 58.839 33.333 0.00 0.00 0.00 2.52
448 449 7.686434 TGCCTTTCAAAGTAATACTACCTTCT 58.314 34.615 0.00 0.00 0.00 2.85
449 450 7.916914 TGCCTTTCAAAGTAATACTACCTTC 57.083 36.000 0.00 0.00 0.00 3.46
450 451 8.879427 AATGCCTTTCAAAGTAATACTACCTT 57.121 30.769 0.00 0.00 0.00 3.50
451 452 8.879427 AAATGCCTTTCAAAGTAATACTACCT 57.121 30.769 0.00 0.00 0.00 3.08
452 453 9.923143 AAAAATGCCTTTCAAAGTAATACTACC 57.077 29.630 0.00 0.00 0.00 3.18
496 497 1.797046 CATCTGGACGATGCATGTAGC 59.203 52.381 2.46 0.00 42.75 3.58
509 510 2.586245 CCCGCTTCTGCATCTGGA 59.414 61.111 0.00 0.00 39.64 3.86
521 522 3.009714 GGAGGAACTTCCCCCGCT 61.010 66.667 4.01 0.00 41.55 5.52
522 523 2.138453 AAAGGAGGAACTTCCCCCGC 62.138 60.000 4.01 0.00 41.55 6.13
524 525 1.427753 TGAAAAGGAGGAACTTCCCCC 59.572 52.381 4.01 1.89 41.55 5.40
529 530 8.311395 AGATTCTTTTTGAAAAGGAGGAACTT 57.689 30.769 14.33 0.00 44.22 2.66
530 531 7.255277 CGAGATTCTTTTTGAAAAGGAGGAACT 60.255 37.037 14.33 6.31 44.22 3.01
544 548 6.296803 ACAAGTAAGACCCGAGATTCTTTTT 58.703 36.000 0.00 0.00 33.96 1.94
549 553 3.734293 CGGACAAGTAAGACCCGAGATTC 60.734 52.174 0.00 0.00 42.49 2.52
618 631 3.517602 TGCTGTCGACGTGCTATTATTT 58.482 40.909 25.97 0.00 0.00 1.40
624 637 2.566529 CCTGCTGTCGACGTGCTA 59.433 61.111 25.97 15.50 0.00 3.49
656 674 0.453793 TGGCATTTAATTGCGACCGG 59.546 50.000 14.36 0.00 43.71 5.28
677 695 5.616270 TCAAAAGTACAGAACCACATGCTA 58.384 37.500 0.00 0.00 0.00 3.49
691 709 3.364068 GGCGACTTGAAGCTCAAAAGTAC 60.364 47.826 8.22 5.01 35.73 2.73
771 789 3.451526 TCTCACTCATGCACGAATGATC 58.548 45.455 0.00 0.00 36.03 2.92
779 797 6.704937 TGAATCATAATCTCTCACTCATGCAC 59.295 38.462 0.00 0.00 0.00 4.57
801 827 4.620982 CCATATAGCATGTGTCGTCTGAA 58.379 43.478 0.00 0.00 0.00 3.02
841 1179 5.443185 TGTGGTGTCACTAAGTAGTACAC 57.557 43.478 2.52 15.49 43.94 2.90
1006 1622 1.347707 CTTGGTGCTGGTTCTAGGACA 59.652 52.381 2.92 0.00 40.36 4.02
1041 1657 3.111484 GAGGAGGAGGTTCTTGAGGAAT 58.889 50.000 0.00 0.00 36.24 3.01
1106 1725 1.435515 CTCTCGTGGAGGCTAGTGC 59.564 63.158 0.00 0.00 38.35 4.40
1170 1789 3.991051 CTCGCTCCACCACCGTGT 61.991 66.667 0.00 0.00 38.41 4.49
1176 1795 3.785859 GGCCATCTCGCTCCACCA 61.786 66.667 0.00 0.00 0.00 4.17
1238 1857 2.678580 TCACGATCCTCCGGCACA 60.679 61.111 0.00 0.00 0.00 4.57
1556 2622 0.745845 ATCAGGAATCACTGCACGCC 60.746 55.000 0.00 0.00 38.36 5.68
1557 2623 0.654683 GATCAGGAATCACTGCACGC 59.345 55.000 0.00 0.00 38.36 5.34
1574 2640 7.556275 TCTTTTTCTCCAAGTGTACACAAAGAT 59.444 33.333 27.06 3.71 0.00 2.40
1579 2645 5.123227 CCTCTTTTTCTCCAAGTGTACACA 58.877 41.667 27.06 6.18 0.00 3.72
1584 2650 3.297134 TGCCTCTTTTTCTCCAAGTGT 57.703 42.857 0.00 0.00 0.00 3.55
1665 2734 4.041815 CCACTCCCTGATCATCAATCATCT 59.958 45.833 0.00 0.00 43.44 2.90
1754 2823 2.055042 CCCGCTGCCTAGAGAGTGT 61.055 63.158 0.00 0.00 0.00 3.55
1777 2846 3.288290 ACTCCGCCTAGCCGATCG 61.288 66.667 8.51 8.51 0.00 3.69
1893 2962 7.164230 AGTTATTTCATGCAACCCGAAATAA 57.836 32.000 20.91 20.91 43.83 1.40
1894 2963 6.183360 GGAGTTATTTCATGCAACCCGAAATA 60.183 38.462 14.78 14.78 39.44 1.40
1895 2964 5.394115 GGAGTTATTTCATGCAACCCGAAAT 60.394 40.000 16.18 16.18 41.14 2.17
1932 3001 9.240734 AGTCAAATGCAGAGAAGAAGATAAAAT 57.759 29.630 0.00 0.00 0.00 1.82
1983 3054 7.660030 AACATGATTTTCCCCCACTTTATAG 57.340 36.000 0.00 0.00 0.00 1.31
2084 3156 7.127012 AGGGATATCATTGCTAGAGATCATG 57.873 40.000 4.83 0.00 35.88 3.07
2140 3214 9.990360 TGTGATGTACAATGAGTTAACTCTTAA 57.010 29.630 30.47 15.33 38.92 1.85
2197 3271 9.708092 GTTGGTAAGACTGTCTTATCTTAAGTT 57.292 33.333 30.48 8.89 40.01 2.66
2235 3309 8.472413 TGGGTGATAGTGTGTATAACTTAAGAC 58.528 37.037 10.09 0.00 0.00 3.01
2244 3318 6.208007 CGATAAGGTGGGTGATAGTGTGTATA 59.792 42.308 0.00 0.00 0.00 1.47
2245 3319 5.010719 CGATAAGGTGGGTGATAGTGTGTAT 59.989 44.000 0.00 0.00 0.00 2.29
2314 3388 9.950496 AGATGGGAGCTTTTTATATATACACAG 57.050 33.333 0.00 0.00 0.00 3.66
2320 3394 9.911788 CATGGTAGATGGGAGCTTTTTATATAT 57.088 33.333 0.00 0.00 0.00 0.86
2329 3403 1.898863 ACCATGGTAGATGGGAGCTT 58.101 50.000 18.10 0.00 43.32 3.74
2352 3426 4.115516 CACTCCTCGTTATCTGGTCATTG 58.884 47.826 0.00 0.00 0.00 2.82
2424 3498 4.205587 TCTTCCAGGATTACTACCTCGAC 58.794 47.826 0.00 0.00 35.35 4.20
2426 3500 5.593679 TTTCTTCCAGGATTACTACCTCG 57.406 43.478 0.00 0.00 35.35 4.63
2521 3597 4.455533 GCCTCCCAAATCCAAAACATTTTC 59.544 41.667 0.00 0.00 0.00 2.29
2527 3603 3.701205 AATGCCTCCCAAATCCAAAAC 57.299 42.857 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.