Multiple sequence alignment - TraesCS7B01G407800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G407800 chr7B 100.000 4042 0 0 1 4042 677116605 677112564 0.000000e+00 7465.0
1 TraesCS7B01G407800 chr7B 86.757 808 98 6 990 1797 666685407 666684609 0.000000e+00 891.0
2 TraesCS7B01G407800 chr7B 79.571 1165 160 47 1919 3045 666684551 666683427 0.000000e+00 761.0
3 TraesCS7B01G407800 chr7B 84.864 773 73 20 2582 3326 677157709 677156953 0.000000e+00 739.0
4 TraesCS7B01G407800 chr7B 84.777 381 50 4 3635 4014 677155048 677154675 3.810000e-100 375.0
5 TraesCS7B01G407800 chr7B 94.406 143 8 0 2411 2553 677158052 677157910 1.890000e-53 220.0
6 TraesCS7B01G407800 chr7B 89.362 47 3 2 2551 2597 639262811 639262767 1.570000e-04 58.4
7 TraesCS7B01G407800 chr7D 94.335 1571 67 9 548 2100 598253584 598252018 0.000000e+00 2388.0
8 TraesCS7B01G407800 chr7D 87.120 1250 104 31 2114 3325 598252033 598250803 0.000000e+00 1363.0
9 TraesCS7B01G407800 chr7D 88.724 807 90 1 990 1795 591806089 591805283 0.000000e+00 985.0
10 TraesCS7B01G407800 chr7D 82.017 1190 117 49 1935 3067 591805201 591804052 0.000000e+00 922.0
11 TraesCS7B01G407800 chr7D 87.469 806 90 7 990 1794 594986779 594987574 0.000000e+00 918.0
12 TraesCS7B01G407800 chr7D 86.514 697 75 10 897 1587 598258213 598257530 0.000000e+00 749.0
13 TraesCS7B01G407800 chr7D 80.518 965 128 40 2118 3045 594987832 594988773 0.000000e+00 686.0
14 TraesCS7B01G407800 chr7D 83.598 189 18 6 707 886 591806752 591806568 8.990000e-37 165.0
15 TraesCS7B01G407800 chr7D 88.462 104 10 1 692 793 598258313 598258210 1.530000e-24 124.0
16 TraesCS7B01G407800 chr7A 92.730 1293 81 3 546 1825 690531789 690533081 0.000000e+00 1855.0
17 TraesCS7B01G407800 chr7A 90.779 1052 70 14 2114 3151 690533265 690534303 0.000000e+00 1380.0
18 TraesCS7B01G407800 chr7A 88.969 834 89 3 964 1795 682892330 682891498 0.000000e+00 1027.0
19 TraesCS7B01G407800 chr7A 82.224 1142 148 30 1946 3059 682891438 682890324 0.000000e+00 933.0
20 TraesCS7B01G407800 chr7A 87.081 805 95 5 990 1794 687953114 687953909 0.000000e+00 902.0
21 TraesCS7B01G407800 chr7A 88.489 695 47 14 3350 4041 690534784 690535448 0.000000e+00 809.0
22 TraesCS7B01G407800 chr7A 86.425 744 70 15 845 1587 690574831 690574118 0.000000e+00 785.0
23 TraesCS7B01G407800 chr7A 79.397 1160 163 48 1919 3045 687953974 687955090 0.000000e+00 749.0
24 TraesCS7B01G407800 chr7A 90.909 209 16 2 1890 2097 690533071 690533277 1.110000e-70 278.0
25 TraesCS7B01G407800 chr7A 85.455 220 21 8 3150 3360 690534488 690534705 6.800000e-53 219.0
26 TraesCS7B01G407800 chr7A 89.423 104 9 1 692 793 690574951 690574848 3.280000e-26 130.0
27 TraesCS7B01G407800 chr5D 87.081 836 95 6 971 1798 476674087 476673257 0.000000e+00 933.0
28 TraesCS7B01G407800 chr5D 81.818 220 35 4 24 240 328428976 328428759 3.210000e-41 180.0
29 TraesCS7B01G407800 chr5D 82.075 212 37 1 10 220 447309971 447309760 3.210000e-41 180.0
30 TraesCS7B01G407800 chr5D 79.752 242 40 9 3 240 238986802 238986566 2.500000e-37 167.0
31 TraesCS7B01G407800 chr5B 86.883 831 94 8 971 1798 584096548 584095730 0.000000e+00 917.0
32 TraesCS7B01G407800 chrUn 92.563 632 35 2 546 1165 87057090 87056459 0.000000e+00 896.0
33 TraesCS7B01G407800 chrUn 86.747 83 11 0 3646 3728 67440172 67440090 4.300000e-15 93.5
34 TraesCS7B01G407800 chrUn 87.500 48 6 0 2533 2580 405825515 405825468 5.640000e-04 56.5
35 TraesCS7B01G407800 chrUn 87.500 48 6 0 2533 2580 473080471 473080424 5.640000e-04 56.5
36 TraesCS7B01G407800 chr3D 82.917 240 37 4 3 240 165764979 165765216 3.160000e-51 213.0
37 TraesCS7B01G407800 chr1D 82.716 243 35 6 3 240 329618043 329618283 4.090000e-50 209.0
38 TraesCS7B01G407800 chr1D 82.160 213 31 7 28 238 135466192 135466399 4.150000e-40 176.0
39 TraesCS7B01G407800 chr1D 85.057 87 13 0 3642 3728 285562114 285562200 5.560000e-14 89.8
40 TraesCS7B01G407800 chr1D 92.857 42 2 1 2549 2590 458431801 458431841 4.360000e-05 60.2
41 TraesCS7B01G407800 chr6A 80.579 242 44 3 1 240 473174918 473174678 2.480000e-42 183.0
42 TraesCS7B01G407800 chr6A 81.651 109 19 1 3620 3728 235075148 235075255 5.560000e-14 89.8
43 TraesCS7B01G407800 chr4A 79.668 241 44 5 3 240 142469658 142469420 6.950000e-38 169.0
44 TraesCS7B01G407800 chr4A 95.000 40 2 0 2541 2580 286750428 286750467 3.370000e-06 63.9
45 TraesCS7B01G407800 chr2B 80.090 221 40 4 3 220 400629836 400630055 1.160000e-35 161.0
46 TraesCS7B01G407800 chr2B 87.805 82 10 0 3647 3728 787156139 787156058 3.330000e-16 97.1
47 TraesCS7B01G407800 chr2B 82.828 99 15 2 3630 3728 692144339 692144243 2.000000e-13 87.9
48 TraesCS7B01G407800 chr1B 87.805 82 10 0 3647 3728 488219148 488219229 3.330000e-16 97.1
49 TraesCS7B01G407800 chr2D 84.211 95 13 2 3626 3718 15187747 15187841 1.550000e-14 91.6
50 TraesCS7B01G407800 chr2D 86.111 72 10 0 3106 3177 180174864 180174935 1.200000e-10 78.7
51 TraesCS7B01G407800 chr1A 92.857 42 2 1 2549 2590 550887690 550887730 4.360000e-05 60.2
52 TraesCS7B01G407800 chr4B 88.000 50 4 2 2542 2590 446518450 446518498 1.570000e-04 58.4
53 TraesCS7B01G407800 chr6D 87.755 49 4 2 2552 2599 419889454 419889407 5.640000e-04 56.5
54 TraesCS7B01G407800 chr6D 100.000 28 0 0 3456 3483 464846639 464846612 7.000000e-03 52.8
55 TraesCS7B01G407800 chr3B 100.000 29 0 0 2552 2580 738689645 738689617 2.000000e-03 54.7
56 TraesCS7B01G407800 chr3A 100.000 28 0 0 3454 3481 380910259 380910286 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G407800 chr7B 677112564 677116605 4041 True 7465.000000 7465 100.000000 1 4042 1 chr7B.!!$R2 4041
1 TraesCS7B01G407800 chr7B 666683427 666685407 1980 True 826.000000 891 83.164000 990 3045 2 chr7B.!!$R3 2055
2 TraesCS7B01G407800 chr7B 677154675 677158052 3377 True 444.666667 739 88.015667 2411 4014 3 chr7B.!!$R4 1603
3 TraesCS7B01G407800 chr7D 598250803 598258313 7510 True 1156.000000 2388 89.107750 548 3325 4 chr7D.!!$R2 2777
4 TraesCS7B01G407800 chr7D 594986779 594988773 1994 False 802.000000 918 83.993500 990 3045 2 chr7D.!!$F1 2055
5 TraesCS7B01G407800 chr7D 591804052 591806752 2700 True 690.666667 985 84.779667 707 3067 3 chr7D.!!$R1 2360
6 TraesCS7B01G407800 chr7A 682890324 682892330 2006 True 980.000000 1027 85.596500 964 3059 2 chr7A.!!$R1 2095
7 TraesCS7B01G407800 chr7A 690531789 690535448 3659 False 908.200000 1855 89.672400 546 4041 5 chr7A.!!$F2 3495
8 TraesCS7B01G407800 chr7A 687953114 687955090 1976 False 825.500000 902 83.239000 990 3045 2 chr7A.!!$F1 2055
9 TraesCS7B01G407800 chr7A 690574118 690574951 833 True 457.500000 785 87.924000 692 1587 2 chr7A.!!$R2 895
10 TraesCS7B01G407800 chr5D 476673257 476674087 830 True 933.000000 933 87.081000 971 1798 1 chr5D.!!$R4 827
11 TraesCS7B01G407800 chr5B 584095730 584096548 818 True 917.000000 917 86.883000 971 1798 1 chr5B.!!$R1 827
12 TraesCS7B01G407800 chrUn 87056459 87057090 631 True 896.000000 896 92.563000 546 1165 1 chrUn.!!$R2 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.031917 TCGGGGCCATAGGTTCACTA 60.032 55.0 4.39 0.0 35.80 2.74 F
311 312 0.033366 AAATGCGTTGGCCCTTGAAC 59.967 50.0 0.00 0.0 38.85 3.18 F
346 347 0.040067 GGAGCGTGGTGAAGCAAAAG 60.040 55.0 0.00 0.0 35.48 2.27 F
476 477 0.179032 TTGGTCATGCACTCGTGGTT 60.179 50.0 0.00 0.0 0.00 3.67 F
499 500 0.250234 AGTGAGGCTAGCAATGCGAA 59.750 50.0 18.24 0.0 0.00 4.70 F
1876 6490 0.623723 CGGATCTTCCCCCTTTTCCA 59.376 55.0 0.00 0.0 31.13 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 6471 0.623723 TGGAAAAGGGGGAAGATCCG 59.376 55.000 0.00 0.0 37.43 4.18 R
1965 6583 1.684983 AGCAGCACAAGCAGTTCAAAT 59.315 42.857 0.00 0.0 45.49 2.32 R
2340 6999 1.773653 TGGCCATGCATATGACCACTA 59.226 47.619 0.00 0.0 41.26 2.74 R
2527 7197 2.971330 TGGCAATGTGGGAATTTCACTT 59.029 40.909 12.13 5.4 36.21 3.16 R
2555 7225 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.0 0.00 4.30 R
3878 10637 0.036875 TCGTCTCTCTCAGCCACTCA 59.963 55.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.525409 GACAGATGGATAAAATGAAAGAAATGG 57.475 33.333 0.00 0.00 0.00 3.16
33 34 9.039165 ACAGATGGATAAAATGAAAGAAATGGT 57.961 29.630 0.00 0.00 0.00 3.55
74 75 6.707440 TTTCATGAGGTTTTCAGTAAAGCA 57.293 33.333 0.00 0.00 44.69 3.91
75 76 6.707440 TTCATGAGGTTTTCAGTAAAGCAA 57.293 33.333 0.00 0.00 44.69 3.91
77 78 6.738114 TCATGAGGTTTTCAGTAAAGCAAAG 58.262 36.000 4.74 0.00 44.69 2.77
79 80 7.500892 TCATGAGGTTTTCAGTAAAGCAAAGTA 59.499 33.333 4.74 0.00 44.69 2.24
80 81 7.259290 TGAGGTTTTCAGTAAAGCAAAGTAG 57.741 36.000 4.74 0.00 44.69 2.57
82 83 7.012044 TGAGGTTTTCAGTAAAGCAAAGTAGAC 59.988 37.037 4.74 0.00 44.69 2.59
83 84 6.826741 AGGTTTTCAGTAAAGCAAAGTAGACA 59.173 34.615 4.74 0.00 44.69 3.41
85 86 7.201705 GGTTTTCAGTAAAGCAAAGTAGACAGT 60.202 37.037 0.00 0.00 42.43 3.55
86 87 7.478520 TTTCAGTAAAGCAAAGTAGACAGTC 57.521 36.000 0.00 0.00 0.00 3.51
87 88 5.220381 TCAGTAAAGCAAAGTAGACAGTCG 58.780 41.667 0.00 0.00 0.00 4.18
89 90 2.457366 AAGCAAAGTAGACAGTCGGG 57.543 50.000 0.00 0.00 0.00 5.14
90 91 0.608640 AGCAAAGTAGACAGTCGGGG 59.391 55.000 0.00 0.00 0.00 5.73
91 92 1.019805 GCAAAGTAGACAGTCGGGGC 61.020 60.000 0.00 0.00 0.00 5.80
92 93 0.391263 CAAAGTAGACAGTCGGGGCC 60.391 60.000 0.00 0.00 0.00 5.80
93 94 0.834687 AAAGTAGACAGTCGGGGCCA 60.835 55.000 4.39 0.00 0.00 5.36
94 95 0.617820 AAGTAGACAGTCGGGGCCAT 60.618 55.000 4.39 0.00 0.00 4.40
95 96 0.260816 AGTAGACAGTCGGGGCCATA 59.739 55.000 4.39 0.00 0.00 2.74
96 97 0.674534 GTAGACAGTCGGGGCCATAG 59.325 60.000 4.39 0.00 0.00 2.23
97 98 0.469331 TAGACAGTCGGGGCCATAGG 60.469 60.000 4.39 0.00 0.00 2.57
98 99 2.040606 ACAGTCGGGGCCATAGGT 59.959 61.111 4.39 0.00 0.00 3.08
100 101 1.146263 CAGTCGGGGCCATAGGTTC 59.854 63.158 4.39 0.00 0.00 3.62
102 103 1.153229 GTCGGGGCCATAGGTTCAC 60.153 63.158 4.39 0.00 0.00 3.18
104 105 0.031917 TCGGGGCCATAGGTTCACTA 60.032 55.000 4.39 0.00 35.80 2.74
105 106 0.393077 CGGGGCCATAGGTTCACTAG 59.607 60.000 4.39 0.00 34.56 2.57
107 108 1.141053 GGGGCCATAGGTTCACTAGTG 59.859 57.143 17.17 17.17 34.56 2.74
111 112 2.158755 GCCATAGGTTCACTAGTGGCAT 60.159 50.000 22.48 15.15 45.56 4.40
113 114 4.263068 GCCATAGGTTCACTAGTGGCATAT 60.263 45.833 22.48 17.94 45.56 1.78
114 115 5.482908 CCATAGGTTCACTAGTGGCATATC 58.517 45.833 22.48 6.69 34.56 1.63
115 116 5.247110 CCATAGGTTCACTAGTGGCATATCT 59.753 44.000 22.48 12.99 34.56 1.98
116 117 6.239714 CCATAGGTTCACTAGTGGCATATCTT 60.240 42.308 22.48 2.20 34.56 2.40
117 118 5.283457 AGGTTCACTAGTGGCATATCTTC 57.717 43.478 22.48 3.36 0.00 2.87
118 119 4.716784 AGGTTCACTAGTGGCATATCTTCA 59.283 41.667 22.48 0.00 0.00 3.02
119 120 5.189736 AGGTTCACTAGTGGCATATCTTCAA 59.810 40.000 22.48 2.78 0.00 2.69
120 121 5.525378 GGTTCACTAGTGGCATATCTTCAAG 59.475 44.000 22.48 0.00 0.00 3.02
121 122 4.697514 TCACTAGTGGCATATCTTCAAGC 58.302 43.478 22.48 0.00 0.00 4.01
123 124 5.061853 CACTAGTGGCATATCTTCAAGCAT 58.938 41.667 15.49 0.00 0.00 3.79
126 127 7.227314 CACTAGTGGCATATCTTCAAGCATAAA 59.773 37.037 15.49 0.00 0.00 1.40
127 128 7.775093 ACTAGTGGCATATCTTCAAGCATAAAA 59.225 33.333 0.00 0.00 0.00 1.52
128 129 7.035840 AGTGGCATATCTTCAAGCATAAAAG 57.964 36.000 0.00 0.00 0.00 2.27
130 131 7.123247 AGTGGCATATCTTCAAGCATAAAAGTT 59.877 33.333 0.00 0.00 0.00 2.66
132 133 8.965819 TGGCATATCTTCAAGCATAAAAGTTTA 58.034 29.630 0.00 0.00 0.00 2.01
138 139 7.648142 TCTTCAAGCATAAAAGTTTAGTGTGG 58.352 34.615 0.00 0.00 0.00 4.17
140 141 8.453238 TTCAAGCATAAAAGTTTAGTGTGGTA 57.547 30.769 0.00 0.00 0.00 3.25
141 142 8.453238 TCAAGCATAAAAGTTTAGTGTGGTAA 57.547 30.769 0.00 0.00 0.00 2.85
143 144 8.964150 CAAGCATAAAAGTTTAGTGTGGTAAAC 58.036 33.333 0.00 0.00 41.39 2.01
144 145 8.228035 AGCATAAAAGTTTAGTGTGGTAAACA 57.772 30.769 8.72 0.00 42.86 2.83
158 159 7.726738 AGTGTGGTAAACAAATTATACTTGGGT 59.273 33.333 0.19 0.00 41.57 4.51
159 160 9.012161 GTGTGGTAAACAAATTATACTTGGGTA 57.988 33.333 0.19 0.00 41.57 3.69
160 161 9.233649 TGTGGTAAACAAATTATACTTGGGTAG 57.766 33.333 0.19 0.00 35.24 3.18
162 163 7.066043 TGGTAAACAAATTATACTTGGGTAGCG 59.934 37.037 0.19 0.00 0.00 4.26
164 165 7.875327 AAACAAATTATACTTGGGTAGCGAT 57.125 32.000 0.00 0.00 0.00 4.58
166 167 8.967664 AACAAATTATACTTGGGTAGCGATTA 57.032 30.769 0.00 0.00 0.00 1.75
167 168 8.967664 ACAAATTATACTTGGGTAGCGATTAA 57.032 30.769 0.00 0.00 0.00 1.40
168 169 9.398538 ACAAATTATACTTGGGTAGCGATTAAA 57.601 29.630 0.00 0.00 0.00 1.52
172 173 8.967664 TTATACTTGGGTAGCGATTAAATTGT 57.032 30.769 0.00 0.00 0.00 2.71
175 176 7.875327 ACTTGGGTAGCGATTAAATTGTAAT 57.125 32.000 0.00 0.00 0.00 1.89
176 177 8.967664 ACTTGGGTAGCGATTAAATTGTAATA 57.032 30.769 0.00 0.00 0.00 0.98
177 178 9.569122 ACTTGGGTAGCGATTAAATTGTAATAT 57.431 29.630 0.00 0.00 0.00 1.28
227 228 9.809096 CATGGTATAATCTCATATAGTCACCAC 57.191 37.037 0.00 0.00 0.00 4.16
228 229 8.051901 TGGTATAATCTCATATAGTCACCACG 57.948 38.462 0.00 0.00 0.00 4.94
229 230 7.668469 TGGTATAATCTCATATAGTCACCACGT 59.332 37.037 0.00 0.00 0.00 4.49
230 231 8.182881 GGTATAATCTCATATAGTCACCACGTC 58.817 40.741 0.00 0.00 0.00 4.34
232 233 2.876550 TCTCATATAGTCACCACGTCCG 59.123 50.000 0.00 0.00 0.00 4.79
233 234 2.617308 CTCATATAGTCACCACGTCCGT 59.383 50.000 0.00 0.00 0.00 4.69
234 235 2.356695 TCATATAGTCACCACGTCCGTG 59.643 50.000 12.66 12.66 45.02 4.94
244 245 1.359117 ACGTCCGTGATATGGCTCG 59.641 57.895 0.00 0.00 0.00 5.03
245 246 1.359117 CGTCCGTGATATGGCTCGT 59.641 57.895 0.00 0.00 0.00 4.18
246 247 0.248907 CGTCCGTGATATGGCTCGTT 60.249 55.000 0.00 0.00 0.00 3.85
247 248 1.209128 GTCCGTGATATGGCTCGTTG 58.791 55.000 0.00 0.00 0.00 4.10
250 251 1.498865 CGTGATATGGCTCGTTGGGC 61.499 60.000 0.00 0.00 0.00 5.36
258 259 4.988598 CTCGTTGGGCCGTGCTGT 62.989 66.667 0.00 0.00 0.00 4.40
259 260 4.555709 TCGTTGGGCCGTGCTGTT 62.556 61.111 0.00 0.00 0.00 3.16
261 262 2.027460 GTTGGGCCGTGCTGTTTG 59.973 61.111 0.00 0.00 0.00 2.93
262 263 2.441164 TTGGGCCGTGCTGTTTGT 60.441 55.556 0.00 0.00 0.00 2.83
264 265 1.608717 TTGGGCCGTGCTGTTTGTTT 61.609 50.000 0.00 0.00 0.00 2.83
265 266 1.591327 GGGCCGTGCTGTTTGTTTG 60.591 57.895 0.00 0.00 0.00 2.93
266 267 2.237066 GGCCGTGCTGTTTGTTTGC 61.237 57.895 0.00 0.00 0.00 3.68
268 269 1.226547 CCGTGCTGTTTGTTTGCGT 60.227 52.632 0.00 0.00 0.00 5.24
270 271 0.522286 CGTGCTGTTTGTTTGCGTGA 60.522 50.000 0.00 0.00 0.00 4.35
271 272 1.623359 GTGCTGTTTGTTTGCGTGAA 58.377 45.000 0.00 0.00 0.00 3.18
272 273 2.192624 GTGCTGTTTGTTTGCGTGAAT 58.807 42.857 0.00 0.00 0.00 2.57
273 274 2.034675 GTGCTGTTTGTTTGCGTGAATG 60.035 45.455 0.00 0.00 0.00 2.67
274 275 2.159324 TGCTGTTTGTTTGCGTGAATGA 60.159 40.909 0.00 0.00 0.00 2.57
275 276 2.857152 GCTGTTTGTTTGCGTGAATGAA 59.143 40.909 0.00 0.00 0.00 2.57
276 277 3.305629 GCTGTTTGTTTGCGTGAATGAAA 59.694 39.130 0.00 0.00 0.00 2.69
278 279 5.196809 TGTTTGTTTGCGTGAATGAAAAC 57.803 34.783 0.00 0.00 37.80 2.43
279 280 4.926238 TGTTTGTTTGCGTGAATGAAAACT 59.074 33.333 7.47 0.00 38.08 2.66
280 281 5.061560 TGTTTGTTTGCGTGAATGAAAACTC 59.938 36.000 7.47 0.86 38.08 3.01
282 283 3.181505 TGTTTGCGTGAATGAAAACTCGT 60.182 39.130 7.47 0.00 38.08 4.18
283 284 2.661504 TGCGTGAATGAAAACTCGTG 57.338 45.000 0.00 0.00 0.00 4.35
284 285 2.205911 TGCGTGAATGAAAACTCGTGA 58.794 42.857 0.00 0.00 0.00 4.35
285 286 2.220824 TGCGTGAATGAAAACTCGTGAG 59.779 45.455 0.00 0.00 0.00 3.51
286 287 2.221055 GCGTGAATGAAAACTCGTGAGT 59.779 45.455 0.00 0.00 44.94 3.41
288 289 3.362986 CGTGAATGAAAACTCGTGAGTGG 60.363 47.826 2.78 0.00 41.58 4.00
289 290 3.807622 GTGAATGAAAACTCGTGAGTGGA 59.192 43.478 2.78 0.00 41.58 4.02
290 291 3.807622 TGAATGAAAACTCGTGAGTGGAC 59.192 43.478 2.78 0.00 41.58 4.02
291 292 1.847818 TGAAAACTCGTGAGTGGACG 58.152 50.000 2.78 0.00 41.58 4.79
292 293 1.406180 TGAAAACTCGTGAGTGGACGA 59.594 47.619 2.78 0.00 45.84 4.20
307 308 2.961768 CGAAATGCGTTGGCCCTT 59.038 55.556 0.00 0.00 38.85 3.95
309 310 1.861542 CGAAATGCGTTGGCCCTTGA 61.862 55.000 0.00 0.00 38.85 3.02
310 311 0.316841 GAAATGCGTTGGCCCTTGAA 59.683 50.000 0.00 0.00 38.85 2.69
311 312 0.033366 AAATGCGTTGGCCCTTGAAC 59.967 50.000 0.00 0.00 38.85 3.18
312 313 0.827507 AATGCGTTGGCCCTTGAACT 60.828 50.000 0.00 0.00 38.85 3.01
315 316 1.007387 CGTTGGCCCTTGAACTTGC 60.007 57.895 0.00 0.00 0.00 4.01
318 319 4.118584 GGCCCTTGAACTTGCCAT 57.881 55.556 0.00 0.00 43.46 4.40
319 320 2.365410 GGCCCTTGAACTTGCCATT 58.635 52.632 0.00 0.00 43.46 3.16
320 321 1.555967 GGCCCTTGAACTTGCCATTA 58.444 50.000 0.00 0.00 43.46 1.90
321 322 1.899142 GGCCCTTGAACTTGCCATTAA 59.101 47.619 0.00 0.00 43.46 1.40
322 323 2.301583 GGCCCTTGAACTTGCCATTAAA 59.698 45.455 0.00 0.00 43.46 1.52
323 324 3.055167 GGCCCTTGAACTTGCCATTAAAT 60.055 43.478 0.00 0.00 43.46 1.40
324 325 4.565444 GGCCCTTGAACTTGCCATTAAATT 60.565 41.667 0.00 0.00 43.46 1.82
325 326 5.337975 GGCCCTTGAACTTGCCATTAAATTA 60.338 40.000 0.00 0.00 43.46 1.40
326 327 6.348498 GCCCTTGAACTTGCCATTAAATTAT 58.652 36.000 0.00 0.00 0.00 1.28
327 328 6.258507 GCCCTTGAACTTGCCATTAAATTATG 59.741 38.462 0.00 0.00 0.00 1.90
328 329 6.762661 CCCTTGAACTTGCCATTAAATTATGG 59.237 38.462 3.21 3.21 46.46 2.74
329 330 7.364585 CCCTTGAACTTGCCATTAAATTATGGA 60.365 37.037 10.87 0.00 46.63 3.41
330 331 7.707893 CCTTGAACTTGCCATTAAATTATGGAG 59.292 37.037 10.87 3.61 46.63 3.86
331 332 6.572519 TGAACTTGCCATTAAATTATGGAGC 58.427 36.000 10.87 0.00 46.63 4.70
333 334 4.644685 ACTTGCCATTAAATTATGGAGCGT 59.355 37.500 10.87 1.96 46.63 5.07
337 338 4.792704 GCCATTAAATTATGGAGCGTGGTG 60.793 45.833 10.87 0.00 46.63 4.17
338 339 4.578516 CCATTAAATTATGGAGCGTGGTGA 59.421 41.667 1.46 0.00 46.63 4.02
339 340 5.067153 CCATTAAATTATGGAGCGTGGTGAA 59.933 40.000 1.46 0.00 46.63 3.18
340 341 5.811399 TTAAATTATGGAGCGTGGTGAAG 57.189 39.130 0.00 0.00 0.00 3.02
341 342 1.668419 ATTATGGAGCGTGGTGAAGC 58.332 50.000 0.00 0.00 0.00 3.86
342 343 0.323302 TTATGGAGCGTGGTGAAGCA 59.677 50.000 0.00 0.00 35.48 3.91
343 344 0.323302 TATGGAGCGTGGTGAAGCAA 59.677 50.000 0.00 0.00 35.48 3.91
344 345 0.537143 ATGGAGCGTGGTGAAGCAAA 60.537 50.000 0.00 0.00 35.48 3.68
345 346 0.749818 TGGAGCGTGGTGAAGCAAAA 60.750 50.000 0.00 0.00 35.48 2.44
346 347 0.040067 GGAGCGTGGTGAAGCAAAAG 60.040 55.000 0.00 0.00 35.48 2.27
348 349 1.537202 GAGCGTGGTGAAGCAAAAGAT 59.463 47.619 0.00 0.00 35.48 2.40
349 350 2.742053 GAGCGTGGTGAAGCAAAAGATA 59.258 45.455 0.00 0.00 35.48 1.98
350 351 3.347216 AGCGTGGTGAAGCAAAAGATAT 58.653 40.909 0.00 0.00 35.48 1.63
351 352 4.513442 AGCGTGGTGAAGCAAAAGATATA 58.487 39.130 0.00 0.00 35.48 0.86
353 354 6.288294 AGCGTGGTGAAGCAAAAGATATATA 58.712 36.000 0.00 0.00 35.48 0.86
355 356 7.445402 AGCGTGGTGAAGCAAAAGATATATATT 59.555 33.333 0.00 0.00 35.48 1.28
356 357 8.076178 GCGTGGTGAAGCAAAAGATATATATTT 58.924 33.333 0.00 0.00 0.00 1.40
357 358 9.950680 CGTGGTGAAGCAAAAGATATATATTTT 57.049 29.630 11.41 11.41 32.00 1.82
382 383 3.798758 GCATAGGGCCTCGGATCT 58.201 61.111 10.74 0.00 36.11 2.75
383 384 2.062070 GCATAGGGCCTCGGATCTT 58.938 57.895 10.74 0.00 36.11 2.40
384 385 0.398318 GCATAGGGCCTCGGATCTTT 59.602 55.000 10.74 0.00 36.11 2.52
387 388 2.710096 TAGGGCCTCGGATCTTTTTG 57.290 50.000 10.74 0.00 0.00 2.44
388 389 0.681243 AGGGCCTCGGATCTTTTTGC 60.681 55.000 0.00 0.00 0.00 3.68
390 391 1.429423 GCCTCGGATCTTTTTGCCG 59.571 57.895 0.00 0.00 46.08 5.69
391 392 1.993369 GCCTCGGATCTTTTTGCCGG 61.993 60.000 0.00 0.00 44.87 6.13
393 394 1.002624 TCGGATCTTTTTGCCGGCT 60.003 52.632 29.70 4.49 44.87 5.52
395 396 1.429423 GGATCTTTTTGCCGGCTCG 59.571 57.895 29.70 11.13 0.00 5.03
426 427 5.641709 GCCTAAAAGCGAAGAAAATTAGCT 58.358 37.500 0.00 0.00 40.20 3.32
427 428 5.739630 GCCTAAAAGCGAAGAAAATTAGCTC 59.260 40.000 0.00 0.00 37.15 4.09
428 429 6.258899 CCTAAAAGCGAAGAAAATTAGCTCC 58.741 40.000 0.00 0.00 37.15 4.70
429 430 5.966742 AAAAGCGAAGAAAATTAGCTCCT 57.033 34.783 0.00 0.00 37.15 3.69
430 431 5.966742 AAAGCGAAGAAAATTAGCTCCTT 57.033 34.783 0.00 0.00 37.15 3.36
431 432 4.954092 AGCGAAGAAAATTAGCTCCTTG 57.046 40.909 0.00 0.00 31.94 3.61
433 434 3.732169 GCGAAGAAAATTAGCTCCTTGGC 60.732 47.826 0.00 0.00 33.05 4.52
434 435 3.691609 CGAAGAAAATTAGCTCCTTGGCT 59.308 43.478 0.00 0.00 45.29 4.75
435 436 4.156739 CGAAGAAAATTAGCTCCTTGGCTT 59.843 41.667 0.00 0.00 42.97 4.35
436 437 5.645624 GAAGAAAATTAGCTCCTTGGCTTC 58.354 41.667 0.00 0.00 42.97 3.86
438 439 3.746792 AAATTAGCTCCTTGGCTTCCT 57.253 42.857 0.00 0.00 42.97 3.36
440 441 0.620556 TTAGCTCCTTGGCTTCCTGG 59.379 55.000 0.00 0.00 42.97 4.45
442 443 0.547712 AGCTCCTTGGCTTCCTGGTA 60.548 55.000 0.00 0.00 39.86 3.25
443 444 0.548510 GCTCCTTGGCTTCCTGGTAT 59.451 55.000 0.00 0.00 0.00 2.73
444 445 1.748591 GCTCCTTGGCTTCCTGGTATG 60.749 57.143 0.00 0.00 0.00 2.39
447 448 1.004745 CCTTGGCTTCCTGGTATGTGT 59.995 52.381 0.00 0.00 0.00 3.72
448 449 2.086869 CTTGGCTTCCTGGTATGTGTG 58.913 52.381 0.00 0.00 0.00 3.82
449 450 1.357137 TGGCTTCCTGGTATGTGTGA 58.643 50.000 0.00 0.00 0.00 3.58
451 452 1.555075 GGCTTCCTGGTATGTGTGAGA 59.445 52.381 0.00 0.00 0.00 3.27
452 453 2.171448 GGCTTCCTGGTATGTGTGAGAT 59.829 50.000 0.00 0.00 0.00 2.75
453 454 3.370953 GGCTTCCTGGTATGTGTGAGATT 60.371 47.826 0.00 0.00 0.00 2.40
456 457 5.491070 CTTCCTGGTATGTGTGAGATTTGA 58.509 41.667 0.00 0.00 0.00 2.69
457 458 5.698741 TCCTGGTATGTGTGAGATTTGAT 57.301 39.130 0.00 0.00 0.00 2.57
458 459 6.065976 TCCTGGTATGTGTGAGATTTGATT 57.934 37.500 0.00 0.00 0.00 2.57
459 460 5.882000 TCCTGGTATGTGTGAGATTTGATTG 59.118 40.000 0.00 0.00 0.00 2.67
461 462 5.569355 TGGTATGTGTGAGATTTGATTGGT 58.431 37.500 0.00 0.00 0.00 3.67
462 463 5.647658 TGGTATGTGTGAGATTTGATTGGTC 59.352 40.000 0.00 0.00 0.00 4.02
463 464 5.647658 GGTATGTGTGAGATTTGATTGGTCA 59.352 40.000 0.00 0.00 0.00 4.02
464 465 6.319658 GGTATGTGTGAGATTTGATTGGTCAT 59.680 38.462 0.00 0.00 33.56 3.06
465 466 5.632244 TGTGTGAGATTTGATTGGTCATG 57.368 39.130 0.00 0.00 33.56 3.07
466 467 4.082625 TGTGTGAGATTTGATTGGTCATGC 60.083 41.667 0.00 0.00 33.56 4.06
467 468 4.080687 TGTGAGATTTGATTGGTCATGCA 58.919 39.130 0.00 0.00 33.56 3.96
468 469 4.082625 TGTGAGATTTGATTGGTCATGCAC 60.083 41.667 0.00 0.00 33.56 4.57
469 470 4.157289 GTGAGATTTGATTGGTCATGCACT 59.843 41.667 0.00 0.00 33.56 4.40
471 472 3.376234 AGATTTGATTGGTCATGCACTCG 59.624 43.478 0.00 0.00 33.56 4.18
472 473 2.183478 TTGATTGGTCATGCACTCGT 57.817 45.000 0.00 0.00 33.56 4.18
474 475 0.729116 GATTGGTCATGCACTCGTGG 59.271 55.000 0.00 0.00 0.00 4.94
476 477 0.179032 TTGGTCATGCACTCGTGGTT 60.179 50.000 0.00 0.00 0.00 3.67
477 478 0.884259 TGGTCATGCACTCGTGGTTG 60.884 55.000 0.00 0.00 0.00 3.77
478 479 0.602638 GGTCATGCACTCGTGGTTGA 60.603 55.000 0.00 0.00 0.00 3.18
479 480 1.442769 GTCATGCACTCGTGGTTGAT 58.557 50.000 0.00 0.00 0.00 2.57
482 483 2.233676 TCATGCACTCGTGGTTGATAGT 59.766 45.455 0.00 0.00 0.00 2.12
483 484 2.078849 TGCACTCGTGGTTGATAGTG 57.921 50.000 0.00 0.00 41.78 2.74
488 489 1.478510 CTCGTGGTTGATAGTGAGGCT 59.521 52.381 0.00 0.00 0.00 4.58
489 490 2.688446 CTCGTGGTTGATAGTGAGGCTA 59.312 50.000 0.00 0.00 0.00 3.93
490 491 2.688446 TCGTGGTTGATAGTGAGGCTAG 59.312 50.000 0.00 0.00 32.45 3.42
492 493 2.168521 GTGGTTGATAGTGAGGCTAGCA 59.831 50.000 18.24 0.00 43.50 3.49
498 499 1.111277 TAGTGAGGCTAGCAATGCGA 58.889 50.000 18.24 0.00 0.00 5.10
499 500 0.250234 AGTGAGGCTAGCAATGCGAA 59.750 50.000 18.24 0.00 0.00 4.70
500 501 1.134280 AGTGAGGCTAGCAATGCGAAT 60.134 47.619 18.24 0.00 0.00 3.34
501 502 1.672881 GTGAGGCTAGCAATGCGAATT 59.327 47.619 18.24 0.00 0.00 2.17
502 503 1.672363 TGAGGCTAGCAATGCGAATTG 59.328 47.619 18.24 12.11 34.79 2.32
509 510 3.038946 CAATGCGAATTGCCTGGTG 57.961 52.632 2.42 0.00 45.60 4.17
511 512 2.546645 AATGCGAATTGCCTGGTGCG 62.547 55.000 0.00 0.00 45.60 5.34
512 513 3.430862 GCGAATTGCCTGGTGCGA 61.431 61.111 0.00 0.00 45.60 5.10
513 514 2.480555 CGAATTGCCTGGTGCGAC 59.519 61.111 0.00 0.00 45.60 5.19
514 515 2.324330 CGAATTGCCTGGTGCGACA 61.324 57.895 0.00 0.00 45.60 4.35
516 517 1.514678 GAATTGCCTGGTGCGACACA 61.515 55.000 11.20 0.00 45.60 3.72
526 527 1.080366 TGCGACACACGTGATACCC 60.080 57.895 25.01 7.88 44.60 3.69
527 528 1.214589 GCGACACACGTGATACCCT 59.785 57.895 25.01 0.00 44.60 4.34
530 531 0.806868 GACACACGTGATACCCTCGA 59.193 55.000 25.01 0.00 35.87 4.04
531 532 1.404391 GACACACGTGATACCCTCGAT 59.596 52.381 25.01 0.00 35.87 3.59
533 534 1.676529 CACACGTGATACCCTCGATCT 59.323 52.381 25.01 0.00 35.87 2.75
534 535 1.676529 ACACGTGATACCCTCGATCTG 59.323 52.381 25.01 0.00 35.87 2.90
535 536 1.001268 CACGTGATACCCTCGATCTGG 60.001 57.143 10.90 0.00 35.87 3.86
536 537 1.319541 CGTGATACCCTCGATCTGGT 58.680 55.000 6.65 6.65 38.69 4.00
537 538 1.681793 CGTGATACCCTCGATCTGGTT 59.318 52.381 6.72 0.00 36.04 3.67
538 539 2.882761 CGTGATACCCTCGATCTGGTTA 59.117 50.000 6.72 0.00 36.04 2.85
540 541 4.142790 GTGATACCCTCGATCTGGTTAGA 58.857 47.826 6.72 0.00 36.04 2.10
541 542 4.216687 GTGATACCCTCGATCTGGTTAGAG 59.783 50.000 6.72 0.00 36.14 2.43
542 543 1.404843 ACCCTCGATCTGGTTAGAGC 58.595 55.000 0.00 0.00 36.14 4.09
543 544 1.342076 ACCCTCGATCTGGTTAGAGCA 60.342 52.381 0.00 0.00 39.28 4.26
544 545 1.757118 CCCTCGATCTGGTTAGAGCAA 59.243 52.381 0.00 0.00 39.28 3.91
545 546 2.223923 CCCTCGATCTGGTTAGAGCAAG 60.224 54.545 0.00 0.00 39.28 4.01
546 547 2.690497 CCTCGATCTGGTTAGAGCAAGA 59.310 50.000 0.00 0.00 39.28 3.02
547 548 3.131223 CCTCGATCTGGTTAGAGCAAGAA 59.869 47.826 0.00 0.00 39.28 2.52
548 549 4.202202 CCTCGATCTGGTTAGAGCAAGAAT 60.202 45.833 0.00 0.00 39.28 2.40
549 550 5.010112 CCTCGATCTGGTTAGAGCAAGAATA 59.990 44.000 0.00 0.00 39.28 1.75
550 551 6.461648 CCTCGATCTGGTTAGAGCAAGAATAA 60.462 42.308 0.00 0.00 39.28 1.40
552 553 5.463724 CGATCTGGTTAGAGCAAGAATAACC 59.536 44.000 6.44 6.44 45.71 2.85
554 555 4.534500 TCTGGTTAGAGCAAGAATAACCCA 59.466 41.667 10.07 0.00 45.17 4.51
555 556 5.013704 TCTGGTTAGAGCAAGAATAACCCAA 59.986 40.000 10.07 0.00 45.17 4.12
556 557 5.636123 TGGTTAGAGCAAGAATAACCCAAA 58.364 37.500 10.07 0.00 45.17 3.28
557 558 6.071984 TGGTTAGAGCAAGAATAACCCAAAA 58.928 36.000 10.07 0.00 45.17 2.44
579 4762 8.334632 CAAAAAGCAACCGACAATATTTCTTTT 58.665 29.630 0.00 0.00 34.08 2.27
595 4778 1.002468 CTTTTGACGGCTCACCACTTG 60.002 52.381 0.00 0.00 34.57 3.16
631 4814 2.800250 ACTCTCCCAGCAAGAAAATGG 58.200 47.619 0.00 0.00 0.00 3.16
638 4821 3.378427 CCCAGCAAGAAAATGGTACTAGC 59.622 47.826 0.00 0.00 31.85 3.42
663 4846 3.131709 AGCACATGTGTAGCAGACTTT 57.868 42.857 26.01 0.00 0.00 2.66
887 5099 2.645802 TGTTGTTTGGGTTTACTCGCT 58.354 42.857 0.00 0.00 0.00 4.93
1215 5824 4.147449 TCGCTCGCCACATCCCTG 62.147 66.667 0.00 0.00 0.00 4.45
1344 5953 4.155733 CGGGCGATGGTGGTGCTA 62.156 66.667 0.00 0.00 0.00 3.49
1590 6199 4.435436 CTCGTGTGCTGGGCGCTA 62.435 66.667 7.64 0.00 40.03 4.26
1728 6337 0.991920 GGACTGGGTTCTCCATGGAA 59.008 55.000 17.00 4.18 46.01 3.53
1748 6357 2.046507 CTTCAAGGAGCTGCGCCT 60.047 61.111 19.75 19.75 34.48 5.52
1830 6439 2.108168 AGCTTCTCCACGTATTGGCTA 58.892 47.619 0.00 0.00 46.47 3.93
1831 6440 2.700897 AGCTTCTCCACGTATTGGCTAT 59.299 45.455 0.00 0.00 46.47 2.97
1837 6446 3.925379 TCCACGTATTGGCTATATGCAG 58.075 45.455 7.88 2.27 46.47 4.41
1840 6449 1.061131 CGTATTGGCTATATGCAGCGC 59.939 52.381 0.00 0.00 45.15 5.92
1867 6481 2.110006 GAGGCAGCGGATCTTCCC 59.890 66.667 0.00 0.00 31.13 3.97
1876 6490 0.623723 CGGATCTTCCCCCTTTTCCA 59.376 55.000 0.00 0.00 31.13 3.53
1902 6516 5.491982 AGAAAAAGATTCTCCACGTATGCT 58.508 37.500 0.00 0.00 0.00 3.79
1965 6583 1.327303 GCAGTTTGGAATGGTGGTCA 58.673 50.000 0.00 0.00 0.00 4.02
2085 6715 7.859598 TGCAATACACAATTCACCAATTTTTC 58.140 30.769 0.00 0.00 28.97 2.29
2131 6761 6.420903 GGGAATTTCTTTTCTAAGTTGTGCAC 59.579 38.462 10.75 10.75 32.98 4.57
2220 6850 2.287977 AAGGTGCCCTTAAACTCACC 57.712 50.000 4.81 10.18 42.74 4.02
2223 6853 2.525368 GGTGCCCTTAAACTCACCAAT 58.475 47.619 12.28 0.00 46.09 3.16
2225 6856 3.442625 GGTGCCCTTAAACTCACCAATAC 59.557 47.826 12.28 0.00 46.09 1.89
2229 6860 4.521256 GCCCTTAAACTCACCAATACACAA 59.479 41.667 0.00 0.00 0.00 3.33
2230 6861 5.185056 GCCCTTAAACTCACCAATACACAAT 59.815 40.000 0.00 0.00 0.00 2.71
2232 6863 7.312899 CCCTTAAACTCACCAATACACAATTC 58.687 38.462 0.00 0.00 0.00 2.17
2246 6890 9.580916 CAATACACAATTCACGTATATGCTAAC 57.419 33.333 0.00 0.00 0.00 2.34
2257 6901 5.360144 ACGTATATGCTAACTGGTGTCTCTT 59.640 40.000 0.00 0.00 0.00 2.85
2340 6999 2.669133 TAGCGAGGCTGGCAACCAT 61.669 57.895 23.60 4.85 40.10 3.55
2458 7117 2.029244 GGAAGTCGTGACATACATTGCG 59.971 50.000 2.44 0.00 0.00 4.85
2527 7197 6.212589 TCCACACATCTCTTTCAGGTAACATA 59.787 38.462 0.00 0.00 41.41 2.29
2553 7223 1.459450 ATTCCCACATTGCCACGTAC 58.541 50.000 0.00 0.00 0.00 3.67
2555 7225 0.036765 TCCCACATTGCCACGTACTC 60.037 55.000 0.00 0.00 0.00 2.59
2556 7226 1.024579 CCCACATTGCCACGTACTCC 61.025 60.000 0.00 0.00 0.00 3.85
2559 7229 0.249398 ACATTGCCACGTACTCCCTC 59.751 55.000 0.00 0.00 0.00 4.30
2561 7231 1.956629 ATTGCCACGTACTCCCTCCG 61.957 60.000 0.00 0.00 0.00 4.63
2562 7232 3.066814 GCCACGTACTCCCTCCGT 61.067 66.667 0.00 0.00 34.71 4.69
2565 7235 2.044551 ACGTACTCCCTCCGTCCC 60.045 66.667 0.00 0.00 0.00 4.46
2566 7236 2.044650 CGTACTCCCTCCGTCCCA 60.045 66.667 0.00 0.00 0.00 4.37
2567 7237 1.455217 CGTACTCCCTCCGTCCCAT 60.455 63.158 0.00 0.00 0.00 4.00
2570 7240 2.606378 GTACTCCCTCCGTCCCATAAT 58.394 52.381 0.00 0.00 0.00 1.28
2574 7244 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2575 7245 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2576 7246 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2577 7247 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2578 7248 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2579 7249 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2631 7477 2.810274 CACAGGTGTGCTATATGGATGC 59.190 50.000 0.00 0.00 39.39 3.91
2716 7562 1.002576 CTGTGTTGCTTGCATTCGTCA 60.003 47.619 0.00 0.00 0.00 4.35
2809 7682 7.839907 AGAGCATGCCTGAAATAACAAAATTA 58.160 30.769 15.66 0.00 0.00 1.40
2917 7798 3.636153 AACTGGGAGAATGAGGTAAGC 57.364 47.619 0.00 0.00 0.00 3.09
2960 7854 7.441017 CACCATAAAATTTTCCTTTGGACAGA 58.559 34.615 20.29 0.00 0.00 3.41
2981 7893 7.339482 ACAGAAATACTTGACCCCTCTTTATC 58.661 38.462 0.00 0.00 0.00 1.75
3031 7943 6.591935 ACATGGTGTTAGAAACTTCTCTTCA 58.408 36.000 0.00 0.00 38.70 3.02
3067 7979 0.738412 TTTCGGCGGATCGGAAACTC 60.738 55.000 7.21 0.00 38.54 3.01
3096 8010 8.190326 AGTATTGTTATATGTGTAGCTAGGCA 57.810 34.615 0.00 0.00 0.00 4.75
3193 8300 4.568072 AACATCCTACCATGTGCTACAA 57.432 40.909 0.00 0.00 37.07 2.41
3334 8479 8.936864 ACTCTTGGAAATTTACAAGTTCTATCG 58.063 33.333 32.53 19.01 46.80 2.92
3342 8487 3.512033 ACAAGTTCTATCGAGCTCCAC 57.488 47.619 8.47 0.00 29.74 4.02
3345 8490 4.645136 ACAAGTTCTATCGAGCTCCACATA 59.355 41.667 8.47 1.52 29.74 2.29
3369 8514 6.810888 AAAAATCGACACATTGTTCACAAG 57.189 33.333 0.00 0.00 39.47 3.16
3381 8614 5.940192 TTGTTCACAAGCGATAGTTCAAT 57.060 34.783 0.00 0.00 39.35 2.57
3458 8691 9.665719 TGCATATTCAAGATACAAGAAACTACA 57.334 29.630 0.00 0.00 0.00 2.74
3684 10418 6.138263 TCAAAATGAAGCATTGAGGGGATAT 58.862 36.000 0.00 0.00 34.04 1.63
3689 10423 5.063204 TGAAGCATTGAGGGGATATAAACG 58.937 41.667 0.00 0.00 0.00 3.60
3690 10424 3.412386 AGCATTGAGGGGATATAAACGC 58.588 45.455 0.00 0.00 0.00 4.84
3695 10452 4.698201 TGAGGGGATATAAACGCAATGA 57.302 40.909 0.00 0.00 0.00 2.57
3696 10453 4.641396 TGAGGGGATATAAACGCAATGAG 58.359 43.478 0.00 0.00 0.00 2.90
3697 10454 3.412386 AGGGGATATAAACGCAATGAGC 58.588 45.455 0.00 0.00 40.87 4.26
3706 10463 3.364441 GCAATGAGCGCACACCCA 61.364 61.111 10.42 0.00 0.00 4.51
3707 10464 2.918345 GCAATGAGCGCACACCCAA 61.918 57.895 10.42 0.00 0.00 4.12
3708 10465 1.885157 CAATGAGCGCACACCCAAT 59.115 52.632 10.42 0.00 0.00 3.16
3709 10466 0.179156 CAATGAGCGCACACCCAATC 60.179 55.000 10.42 0.00 0.00 2.67
3710 10467 0.322816 AATGAGCGCACACCCAATCT 60.323 50.000 10.42 0.00 0.00 2.40
3711 10468 0.745845 ATGAGCGCACACCCAATCTC 60.746 55.000 10.42 0.00 0.00 2.75
3712 10469 1.078848 GAGCGCACACCCAATCTCT 60.079 57.895 11.47 0.00 0.00 3.10
3713 10470 1.364626 GAGCGCACACCCAATCTCTG 61.365 60.000 11.47 0.00 0.00 3.35
3714 10471 3.044059 GCGCACACCCAATCTCTGC 62.044 63.158 0.30 0.00 0.00 4.26
3715 10472 1.672030 CGCACACCCAATCTCTGCA 60.672 57.895 0.00 0.00 0.00 4.41
3716 10473 1.028330 CGCACACCCAATCTCTGCAT 61.028 55.000 0.00 0.00 0.00 3.96
3717 10474 1.743431 CGCACACCCAATCTCTGCATA 60.743 52.381 0.00 0.00 0.00 3.14
3750 10509 2.585869 GCACACACACAGTCCGTCG 61.586 63.158 0.00 0.00 0.00 5.12
3813 10572 3.657398 TCCATCATGACTGGAGCAAAT 57.343 42.857 17.73 0.00 37.87 2.32
3885 10644 0.394762 TGCATGGGAGATTGAGTGGC 60.395 55.000 0.00 0.00 0.00 5.01
3889 10648 0.907486 TGGGAGATTGAGTGGCTGAG 59.093 55.000 0.00 0.00 0.00 3.35
3899 10658 0.679640 AGTGGCTGAGAGAGACGAGG 60.680 60.000 0.00 0.00 28.23 4.63
3936 10695 7.928167 CCTCTGTATACAACTTTATGAGATGCA 59.072 37.037 14.40 0.00 31.75 3.96
3938 10697 9.481340 TCTGTATACAACTTTATGAGATGCATC 57.519 33.333 19.37 19.37 38.44 3.91
3940 10699 9.783081 TGTATACAACTTTATGAGATGCATCAT 57.217 29.630 27.81 17.60 42.52 2.45
3975 10734 7.386851 CCCCGACATAAGTAGATATGAAATGT 58.613 38.462 1.60 0.00 36.87 2.71
3992 10751 0.878416 TGTGGTTGCGGATGCTAAAC 59.122 50.000 0.00 0.00 43.34 2.01
4015 10774 4.632153 GAAGTGACTGCTGAGGAACTAAA 58.368 43.478 0.00 0.00 41.55 1.85
4023 10782 3.192844 TGCTGAGGAACTAAACCTACTCG 59.807 47.826 0.00 0.00 41.55 4.18
4041 10800 1.795170 CGTGGACCTGGCCAAAGTTG 61.795 60.000 7.01 0.00 40.20 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.525409 CCATTTCTTTCATTTTATCCATCTGTC 57.475 33.333 0.00 0.00 0.00 3.51
7 8 9.039165 ACCATTTCTTTCATTTTATCCATCTGT 57.961 29.630 0.00 0.00 0.00 3.41
12 13 9.921637 GTTGTACCATTTCTTTCATTTTATCCA 57.078 29.630 0.00 0.00 0.00 3.41
13 14 9.921637 TGTTGTACCATTTCTTTCATTTTATCC 57.078 29.630 0.00 0.00 0.00 2.59
16 17 9.757227 CCTTGTTGTACCATTTCTTTCATTTTA 57.243 29.630 0.00 0.00 0.00 1.52
18 19 6.705825 GCCTTGTTGTACCATTTCTTTCATTT 59.294 34.615 0.00 0.00 0.00 2.32
19 20 6.183360 TGCCTTGTTGTACCATTTCTTTCATT 60.183 34.615 0.00 0.00 0.00 2.57
22 23 5.195001 TGCCTTGTTGTACCATTTCTTTC 57.805 39.130 0.00 0.00 0.00 2.62
23 24 5.606348 TTGCCTTGTTGTACCATTTCTTT 57.394 34.783 0.00 0.00 0.00 2.52
24 25 5.606348 TTTGCCTTGTTGTACCATTTCTT 57.394 34.783 0.00 0.00 0.00 2.52
27 28 7.637631 AAAAATTTGCCTTGTTGTACCATTT 57.362 28.000 0.00 0.00 0.00 2.32
50 51 7.106439 TGCTTTACTGAAAACCTCATGAAAA 57.894 32.000 0.00 0.00 32.14 2.29
51 52 6.707440 TGCTTTACTGAAAACCTCATGAAA 57.293 33.333 0.00 0.00 32.14 2.69
52 53 6.707440 TTGCTTTACTGAAAACCTCATGAA 57.293 33.333 0.00 0.00 32.14 2.57
53 54 6.321181 ACTTTGCTTTACTGAAAACCTCATGA 59.679 34.615 0.00 0.00 32.14 3.07
54 55 6.507023 ACTTTGCTTTACTGAAAACCTCATG 58.493 36.000 0.00 0.00 32.14 3.07
55 56 6.715347 ACTTTGCTTTACTGAAAACCTCAT 57.285 33.333 0.00 0.00 32.14 2.90
56 57 7.012044 GTCTACTTTGCTTTACTGAAAACCTCA 59.988 37.037 0.00 0.00 0.00 3.86
57 58 7.012044 TGTCTACTTTGCTTTACTGAAAACCTC 59.988 37.037 0.00 0.00 0.00 3.85
58 59 6.826741 TGTCTACTTTGCTTTACTGAAAACCT 59.173 34.615 0.00 0.00 0.00 3.50
60 61 7.694886 ACTGTCTACTTTGCTTTACTGAAAAC 58.305 34.615 0.00 0.00 0.00 2.43
61 62 7.254319 CGACTGTCTACTTTGCTTTACTGAAAA 60.254 37.037 6.21 0.00 0.00 2.29
62 63 6.200286 CGACTGTCTACTTTGCTTTACTGAAA 59.800 38.462 6.21 0.00 0.00 2.69
63 64 5.690409 CGACTGTCTACTTTGCTTTACTGAA 59.310 40.000 6.21 0.00 0.00 3.02
64 65 5.220381 CGACTGTCTACTTTGCTTTACTGA 58.780 41.667 6.21 0.00 0.00 3.41
67 68 3.678548 CCCGACTGTCTACTTTGCTTTAC 59.321 47.826 6.21 0.00 0.00 2.01
68 69 3.306502 CCCCGACTGTCTACTTTGCTTTA 60.307 47.826 6.21 0.00 0.00 1.85
69 70 2.550208 CCCCGACTGTCTACTTTGCTTT 60.550 50.000 6.21 0.00 0.00 3.51
70 71 1.002087 CCCCGACTGTCTACTTTGCTT 59.998 52.381 6.21 0.00 0.00 3.91
71 72 0.608640 CCCCGACTGTCTACTTTGCT 59.391 55.000 6.21 0.00 0.00 3.91
72 73 1.019805 GCCCCGACTGTCTACTTTGC 61.020 60.000 6.21 0.00 0.00 3.68
73 74 0.391263 GGCCCCGACTGTCTACTTTG 60.391 60.000 6.21 0.00 0.00 2.77
74 75 0.834687 TGGCCCCGACTGTCTACTTT 60.835 55.000 0.00 0.00 0.00 2.66
75 76 0.617820 ATGGCCCCGACTGTCTACTT 60.618 55.000 0.00 0.00 0.00 2.24
77 78 0.674534 CTATGGCCCCGACTGTCTAC 59.325 60.000 0.00 0.00 0.00 2.59
79 80 1.762460 CCTATGGCCCCGACTGTCT 60.762 63.158 0.00 0.00 0.00 3.41
80 81 1.623542 AACCTATGGCCCCGACTGTC 61.624 60.000 0.00 0.00 0.00 3.51
82 83 1.146263 GAACCTATGGCCCCGACTG 59.854 63.158 0.00 0.00 0.00 3.51
83 84 1.306654 TGAACCTATGGCCCCGACT 60.307 57.895 0.00 0.00 0.00 4.18
85 86 0.031917 TAGTGAACCTATGGCCCCGA 60.032 55.000 0.00 0.00 0.00 5.14
86 87 0.393077 CTAGTGAACCTATGGCCCCG 59.607 60.000 0.00 0.00 0.00 5.73
87 88 1.141053 CACTAGTGAACCTATGGCCCC 59.859 57.143 18.45 0.00 0.00 5.80
89 90 1.475213 GCCACTAGTGAACCTATGGCC 60.475 57.143 24.68 0.00 40.61 5.36
90 91 1.209504 TGCCACTAGTGAACCTATGGC 59.790 52.381 24.68 16.18 43.42 4.40
91 92 3.845781 ATGCCACTAGTGAACCTATGG 57.154 47.619 24.68 5.91 32.15 2.74
92 93 6.352016 AGATATGCCACTAGTGAACCTATG 57.648 41.667 24.68 6.56 0.00 2.23
93 94 6.554982 TGAAGATATGCCACTAGTGAACCTAT 59.445 38.462 24.68 16.33 0.00 2.57
94 95 5.897250 TGAAGATATGCCACTAGTGAACCTA 59.103 40.000 24.68 12.67 0.00 3.08
95 96 4.716784 TGAAGATATGCCACTAGTGAACCT 59.283 41.667 24.68 10.97 0.00 3.50
96 97 5.023533 TGAAGATATGCCACTAGTGAACC 57.976 43.478 24.68 12.06 0.00 3.62
97 98 5.007136 GCTTGAAGATATGCCACTAGTGAAC 59.993 44.000 24.68 15.64 0.00 3.18
98 99 5.118990 GCTTGAAGATATGCCACTAGTGAA 58.881 41.667 24.68 12.26 0.00 3.18
100 101 4.445453 TGCTTGAAGATATGCCACTAGTG 58.555 43.478 16.34 16.34 0.00 2.74
102 103 7.734924 TTTATGCTTGAAGATATGCCACTAG 57.265 36.000 0.00 0.00 0.00 2.57
104 105 6.604795 ACTTTTATGCTTGAAGATATGCCACT 59.395 34.615 0.00 0.00 0.00 4.00
105 106 6.799512 ACTTTTATGCTTGAAGATATGCCAC 58.200 36.000 0.00 0.00 0.00 5.01
107 108 9.455847 CTAAACTTTTATGCTTGAAGATATGCC 57.544 33.333 0.00 0.00 0.00 4.40
113 114 7.284489 ACCACACTAAACTTTTATGCTTGAAGA 59.716 33.333 0.00 0.00 0.00 2.87
114 115 7.425606 ACCACACTAAACTTTTATGCTTGAAG 58.574 34.615 0.00 0.00 0.00 3.02
115 116 7.341445 ACCACACTAAACTTTTATGCTTGAA 57.659 32.000 0.00 0.00 0.00 2.69
116 117 6.952773 ACCACACTAAACTTTTATGCTTGA 57.047 33.333 0.00 0.00 0.00 3.02
117 118 8.964150 GTTTACCACACTAAACTTTTATGCTTG 58.036 33.333 0.00 0.00 34.86 4.01
118 119 8.688151 TGTTTACCACACTAAACTTTTATGCTT 58.312 29.630 0.00 0.00 37.46 3.91
119 120 8.228035 TGTTTACCACACTAAACTTTTATGCT 57.772 30.769 0.00 0.00 37.46 3.79
120 121 8.859517 TTGTTTACCACACTAAACTTTTATGC 57.140 30.769 0.00 0.00 37.46 3.14
132 133 7.726738 ACCCAAGTATAATTTGTTTACCACACT 59.273 33.333 0.00 0.00 33.98 3.55
134 135 9.233649 CTACCCAAGTATAATTTGTTTACCACA 57.766 33.333 0.00 0.00 0.00 4.17
135 136 8.186163 GCTACCCAAGTATAATTTGTTTACCAC 58.814 37.037 0.00 0.00 0.00 4.16
136 137 7.066043 CGCTACCCAAGTATAATTTGTTTACCA 59.934 37.037 0.00 0.00 0.00 3.25
137 138 7.280652 TCGCTACCCAAGTATAATTTGTTTACC 59.719 37.037 0.00 0.00 0.00 2.85
138 139 8.200364 TCGCTACCCAAGTATAATTTGTTTAC 57.800 34.615 0.00 0.00 0.00 2.01
140 141 7.875327 ATCGCTACCCAAGTATAATTTGTTT 57.125 32.000 0.00 0.00 0.00 2.83
141 142 7.875327 AATCGCTACCCAAGTATAATTTGTT 57.125 32.000 0.00 0.00 0.00 2.83
147 148 8.967664 ACAATTTAATCGCTACCCAAGTATAA 57.032 30.769 0.00 0.00 0.00 0.98
149 150 8.967664 TTACAATTTAATCGCTACCCAAGTAT 57.032 30.769 0.00 0.00 0.00 2.12
150 151 8.967664 ATTACAATTTAATCGCTACCCAAGTA 57.032 30.769 0.00 0.00 0.00 2.24
151 152 7.875327 ATTACAATTTAATCGCTACCCAAGT 57.125 32.000 0.00 0.00 0.00 3.16
200 201 9.768215 TGGTGACTATATGAGATTATACCATGA 57.232 33.333 0.00 0.00 0.00 3.07
201 202 9.809096 GTGGTGACTATATGAGATTATACCATG 57.191 37.037 0.00 0.00 0.00 3.66
202 203 8.687242 CGTGGTGACTATATGAGATTATACCAT 58.313 37.037 0.00 0.00 0.00 3.55
203 204 7.668469 ACGTGGTGACTATATGAGATTATACCA 59.332 37.037 0.00 0.00 0.00 3.25
204 205 8.053026 ACGTGGTGACTATATGAGATTATACC 57.947 38.462 0.00 0.00 0.00 2.73
205 206 8.182881 GGACGTGGTGACTATATGAGATTATAC 58.817 40.741 0.00 0.00 0.00 1.47
206 207 7.065443 CGGACGTGGTGACTATATGAGATTATA 59.935 40.741 0.00 0.00 0.00 0.98
207 208 6.127980 CGGACGTGGTGACTATATGAGATTAT 60.128 42.308 0.00 0.00 0.00 1.28
208 209 5.180680 CGGACGTGGTGACTATATGAGATTA 59.819 44.000 0.00 0.00 0.00 1.75
209 210 4.023107 CGGACGTGGTGACTATATGAGATT 60.023 45.833 0.00 0.00 0.00 2.40
211 212 2.876550 CGGACGTGGTGACTATATGAGA 59.123 50.000 0.00 0.00 0.00 3.27
212 213 2.617308 ACGGACGTGGTGACTATATGAG 59.383 50.000 0.00 0.00 0.00 2.90
213 214 2.356695 CACGGACGTGGTGACTATATGA 59.643 50.000 16.46 0.00 42.00 2.15
215 216 2.646930 TCACGGACGTGGTGACTATAT 58.353 47.619 22.71 0.00 45.43 0.86
216 217 2.112380 TCACGGACGTGGTGACTATA 57.888 50.000 22.71 0.07 45.43 1.31
218 219 2.112380 TATCACGGACGTGGTGACTA 57.888 50.000 22.71 10.79 46.22 2.59
219 220 1.134367 CATATCACGGACGTGGTGACT 59.866 52.381 22.71 11.54 46.22 3.41
220 221 1.556564 CATATCACGGACGTGGTGAC 58.443 55.000 22.71 0.00 46.22 3.67
222 223 1.151777 GCCATATCACGGACGTGGTG 61.152 60.000 22.71 17.79 45.43 4.17
225 226 0.934901 CGAGCCATATCACGGACGTG 60.935 60.000 17.97 17.97 46.64 4.49
227 228 0.248907 AACGAGCCATATCACGGACG 60.249 55.000 0.00 0.00 0.00 4.79
228 229 1.209128 CAACGAGCCATATCACGGAC 58.791 55.000 0.00 0.00 0.00 4.79
229 230 0.104120 CCAACGAGCCATATCACGGA 59.896 55.000 0.00 0.00 0.00 4.69
230 231 0.880278 CCCAACGAGCCATATCACGG 60.880 60.000 0.00 0.00 0.00 4.94
232 233 2.321213 GCCCAACGAGCCATATCAC 58.679 57.895 0.00 0.00 0.00 3.06
233 234 4.876701 GCCCAACGAGCCATATCA 57.123 55.556 0.00 0.00 0.00 2.15
241 242 4.988598 ACAGCACGGCCCAACGAG 62.989 66.667 0.00 0.00 37.61 4.18
242 243 4.555709 AACAGCACGGCCCAACGA 62.556 61.111 0.00 0.00 37.61 3.85
244 245 2.027460 CAAACAGCACGGCCCAAC 59.973 61.111 0.00 0.00 0.00 3.77
245 246 1.608717 AAACAAACAGCACGGCCCAA 61.609 50.000 0.00 0.00 0.00 4.12
246 247 2.055042 AAACAAACAGCACGGCCCA 61.055 52.632 0.00 0.00 0.00 5.36
247 248 1.591327 CAAACAAACAGCACGGCCC 60.591 57.895 0.00 0.00 0.00 5.80
250 251 1.226547 ACGCAAACAAACAGCACGG 60.227 52.632 0.00 0.00 0.00 4.94
251 252 0.522286 TCACGCAAACAAACAGCACG 60.522 50.000 0.00 0.00 0.00 5.34
252 253 1.623359 TTCACGCAAACAAACAGCAC 58.377 45.000 0.00 0.00 0.00 4.40
253 254 2.159324 TCATTCACGCAAACAAACAGCA 60.159 40.909 0.00 0.00 0.00 4.41
255 256 5.062058 AGTTTTCATTCACGCAAACAAACAG 59.938 36.000 0.00 0.00 32.52 3.16
256 257 4.926238 AGTTTTCATTCACGCAAACAAACA 59.074 33.333 0.00 0.00 32.52 2.83
257 258 5.448926 AGTTTTCATTCACGCAAACAAAC 57.551 34.783 0.00 0.00 32.52 2.93
258 259 4.264145 CGAGTTTTCATTCACGCAAACAAA 59.736 37.500 0.00 0.00 32.52 2.83
259 260 3.788694 CGAGTTTTCATTCACGCAAACAA 59.211 39.130 0.00 0.00 32.52 2.83
261 262 3.177643 CACGAGTTTTCATTCACGCAAAC 59.822 43.478 0.00 0.00 0.00 2.93
262 263 3.064134 TCACGAGTTTTCATTCACGCAAA 59.936 39.130 0.00 0.00 0.00 3.68
264 265 2.205911 TCACGAGTTTTCATTCACGCA 58.794 42.857 0.00 0.00 0.00 5.24
265 266 2.221055 ACTCACGAGTTTTCATTCACGC 59.779 45.455 0.00 0.00 38.83 5.34
266 267 3.362986 CCACTCACGAGTTTTCATTCACG 60.363 47.826 0.00 0.00 40.20 4.35
268 269 3.807622 GTCCACTCACGAGTTTTCATTCA 59.192 43.478 0.00 0.00 40.20 2.57
270 271 2.800544 CGTCCACTCACGAGTTTTCATT 59.199 45.455 0.00 0.00 42.69 2.57
271 272 2.035449 TCGTCCACTCACGAGTTTTCAT 59.965 45.455 0.00 0.00 43.79 2.57
272 273 1.406180 TCGTCCACTCACGAGTTTTCA 59.594 47.619 0.00 0.00 43.79 2.69
273 274 2.129823 TCGTCCACTCACGAGTTTTC 57.870 50.000 0.00 0.00 43.79 2.29
279 280 1.006825 CGCATTTCGTCCACTCACGA 61.007 55.000 0.00 0.00 46.91 4.35
280 281 1.416049 CGCATTTCGTCCACTCACG 59.584 57.895 0.00 0.00 41.36 4.35
290 291 1.444212 CAAGGGCCAACGCATTTCG 60.444 57.895 6.18 0.00 45.38 3.46
291 292 0.316841 TTCAAGGGCCAACGCATTTC 59.683 50.000 6.18 0.00 36.38 2.17
292 293 0.033366 GTTCAAGGGCCAACGCATTT 59.967 50.000 6.18 0.00 36.38 2.32
293 294 0.827507 AGTTCAAGGGCCAACGCATT 60.828 50.000 6.18 0.00 36.38 3.56
294 295 0.827507 AAGTTCAAGGGCCAACGCAT 60.828 50.000 6.18 0.00 36.38 4.73
299 300 3.869481 GGCAAGTTCAAGGGCCAA 58.131 55.556 6.18 0.00 45.70 4.52
301 302 1.555967 TAATGGCAAGTTCAAGGGCC 58.444 50.000 0.00 0.00 46.58 5.80
303 304 6.762661 CCATAATTTAATGGCAAGTTCAAGGG 59.237 38.462 0.00 0.00 40.07 3.95
306 307 7.041107 GCTCCATAATTTAATGGCAAGTTCAA 58.959 34.615 2.73 0.00 45.21 2.69
307 308 6.572519 GCTCCATAATTTAATGGCAAGTTCA 58.427 36.000 2.73 0.00 45.21 3.18
309 310 5.127031 ACGCTCCATAATTTAATGGCAAGTT 59.873 36.000 2.73 0.00 45.21 2.66
310 311 4.644685 ACGCTCCATAATTTAATGGCAAGT 59.355 37.500 2.73 0.66 45.21 3.16
311 312 4.977963 CACGCTCCATAATTTAATGGCAAG 59.022 41.667 2.73 0.00 45.21 4.01
312 313 4.202101 CCACGCTCCATAATTTAATGGCAA 60.202 41.667 2.73 0.00 45.21 4.52
315 316 4.578516 TCACCACGCTCCATAATTTAATGG 59.421 41.667 1.28 1.28 46.69 3.16
317 318 5.221048 GCTTCACCACGCTCCATAATTTAAT 60.221 40.000 0.00 0.00 0.00 1.40
318 319 4.095782 GCTTCACCACGCTCCATAATTTAA 59.904 41.667 0.00 0.00 0.00 1.52
319 320 3.625764 GCTTCACCACGCTCCATAATTTA 59.374 43.478 0.00 0.00 0.00 1.40
320 321 2.423538 GCTTCACCACGCTCCATAATTT 59.576 45.455 0.00 0.00 0.00 1.82
321 322 2.017049 GCTTCACCACGCTCCATAATT 58.983 47.619 0.00 0.00 0.00 1.40
322 323 1.065491 TGCTTCACCACGCTCCATAAT 60.065 47.619 0.00 0.00 0.00 1.28
323 324 0.323302 TGCTTCACCACGCTCCATAA 59.677 50.000 0.00 0.00 0.00 1.90
324 325 0.323302 TTGCTTCACCACGCTCCATA 59.677 50.000 0.00 0.00 0.00 2.74
325 326 0.537143 TTTGCTTCACCACGCTCCAT 60.537 50.000 0.00 0.00 0.00 3.41
326 327 0.749818 TTTTGCTTCACCACGCTCCA 60.750 50.000 0.00 0.00 0.00 3.86
327 328 0.040067 CTTTTGCTTCACCACGCTCC 60.040 55.000 0.00 0.00 0.00 4.70
328 329 0.944386 TCTTTTGCTTCACCACGCTC 59.056 50.000 0.00 0.00 0.00 5.03
329 330 1.609208 ATCTTTTGCTTCACCACGCT 58.391 45.000 0.00 0.00 0.00 5.07
330 331 3.764885 ATATCTTTTGCTTCACCACGC 57.235 42.857 0.00 0.00 0.00 5.34
331 332 9.950680 AAAATATATATCTTTTGCTTCACCACG 57.049 29.630 7.75 0.00 0.00 4.94
365 366 0.398318 AAAGATCCGAGGCCCTATGC 59.602 55.000 0.00 0.00 40.16 3.14
366 367 2.880890 CAAAAAGATCCGAGGCCCTATG 59.119 50.000 0.00 0.00 0.00 2.23
367 368 2.749800 GCAAAAAGATCCGAGGCCCTAT 60.750 50.000 0.00 0.00 0.00 2.57
368 369 1.408266 GCAAAAAGATCCGAGGCCCTA 60.408 52.381 0.00 0.00 0.00 3.53
369 370 0.681243 GCAAAAAGATCCGAGGCCCT 60.681 55.000 0.00 0.00 0.00 5.19
371 372 1.809869 GGCAAAAAGATCCGAGGCC 59.190 57.895 0.00 0.00 0.00 5.19
372 373 1.429423 CGGCAAAAAGATCCGAGGC 59.571 57.895 0.00 0.00 45.53 4.70
373 374 1.993369 GCCGGCAAAAAGATCCGAGG 61.993 60.000 24.80 0.00 45.53 4.63
375 376 1.002624 AGCCGGCAAAAAGATCCGA 60.003 52.632 31.54 0.00 45.53 4.55
376 377 1.429423 GAGCCGGCAAAAAGATCCG 59.571 57.895 31.54 0.00 42.58 4.18
377 378 1.429423 CGAGCCGGCAAAAAGATCC 59.571 57.895 31.54 4.58 0.00 3.36
379 380 3.590824 CCGAGCCGGCAAAAAGAT 58.409 55.556 31.54 5.22 41.17 2.40
403 404 5.641709 AGCTAATTTTCTTCGCTTTTAGGC 58.358 37.500 0.00 0.00 0.00 3.93
404 405 6.094186 AGGAGCTAATTTTCTTCGCTTTTAGG 59.906 38.462 0.00 0.00 0.00 2.69
407 408 5.966742 AGGAGCTAATTTTCTTCGCTTTT 57.033 34.783 0.00 0.00 0.00 2.27
408 409 5.335976 CCAAGGAGCTAATTTTCTTCGCTTT 60.336 40.000 0.00 0.00 0.00 3.51
409 410 4.156739 CCAAGGAGCTAATTTTCTTCGCTT 59.843 41.667 0.00 0.00 0.00 4.68
410 411 3.691609 CCAAGGAGCTAATTTTCTTCGCT 59.308 43.478 0.00 0.00 0.00 4.93
411 412 3.732169 GCCAAGGAGCTAATTTTCTTCGC 60.732 47.826 0.00 0.00 0.00 4.70
413 414 5.393569 GGAAGCCAAGGAGCTAATTTTCTTC 60.394 44.000 0.00 0.15 44.11 2.87
414 415 4.464244 GGAAGCCAAGGAGCTAATTTTCTT 59.536 41.667 0.00 0.00 44.11 2.52
415 416 4.019858 GGAAGCCAAGGAGCTAATTTTCT 58.980 43.478 0.00 0.00 44.11 2.52
416 417 4.019858 AGGAAGCCAAGGAGCTAATTTTC 58.980 43.478 0.00 0.00 44.11 2.29
417 418 3.766051 CAGGAAGCCAAGGAGCTAATTTT 59.234 43.478 0.00 0.00 44.11 1.82
418 419 3.359950 CAGGAAGCCAAGGAGCTAATTT 58.640 45.455 0.00 0.00 44.11 1.82
419 420 2.357569 CCAGGAAGCCAAGGAGCTAATT 60.358 50.000 0.00 0.00 44.11 1.40
420 421 1.213926 CCAGGAAGCCAAGGAGCTAAT 59.786 52.381 0.00 0.00 44.11 1.73
421 422 0.620556 CCAGGAAGCCAAGGAGCTAA 59.379 55.000 0.00 0.00 44.11 3.09
422 423 0.547712 ACCAGGAAGCCAAGGAGCTA 60.548 55.000 0.00 0.00 44.11 3.32
424 425 0.548510 ATACCAGGAAGCCAAGGAGC 59.451 55.000 0.00 0.00 0.00 4.70
426 427 1.281867 CACATACCAGGAAGCCAAGGA 59.718 52.381 0.00 0.00 0.00 3.36
427 428 1.004745 ACACATACCAGGAAGCCAAGG 59.995 52.381 0.00 0.00 0.00 3.61
428 429 2.086869 CACACATACCAGGAAGCCAAG 58.913 52.381 0.00 0.00 0.00 3.61
429 430 1.702401 TCACACATACCAGGAAGCCAA 59.298 47.619 0.00 0.00 0.00 4.52
430 431 1.278985 CTCACACATACCAGGAAGCCA 59.721 52.381 0.00 0.00 0.00 4.75
431 432 1.555075 TCTCACACATACCAGGAAGCC 59.445 52.381 0.00 0.00 0.00 4.35
433 434 5.491070 TCAAATCTCACACATACCAGGAAG 58.509 41.667 0.00 0.00 0.00 3.46
434 435 5.497464 TCAAATCTCACACATACCAGGAA 57.503 39.130 0.00 0.00 0.00 3.36
435 436 5.698741 ATCAAATCTCACACATACCAGGA 57.301 39.130 0.00 0.00 0.00 3.86
436 437 5.066893 CCAATCAAATCTCACACATACCAGG 59.933 44.000 0.00 0.00 0.00 4.45
438 439 5.569355 ACCAATCAAATCTCACACATACCA 58.431 37.500 0.00 0.00 0.00 3.25
440 441 6.741992 TGACCAATCAAATCTCACACATAC 57.258 37.500 0.00 0.00 0.00 2.39
442 443 5.393787 GCATGACCAATCAAATCTCACACAT 60.394 40.000 0.00 0.00 38.69 3.21
443 444 4.082625 GCATGACCAATCAAATCTCACACA 60.083 41.667 0.00 0.00 38.69 3.72
444 445 4.082625 TGCATGACCAATCAAATCTCACAC 60.083 41.667 0.00 0.00 38.69 3.82
447 448 4.338012 AGTGCATGACCAATCAAATCTCA 58.662 39.130 0.00 0.00 38.69 3.27
448 449 4.495349 CGAGTGCATGACCAATCAAATCTC 60.495 45.833 0.00 0.00 38.69 2.75
449 450 3.376234 CGAGTGCATGACCAATCAAATCT 59.624 43.478 0.00 0.00 38.69 2.40
451 452 3.084039 ACGAGTGCATGACCAATCAAAT 58.916 40.909 0.00 0.00 38.69 2.32
452 453 2.226200 CACGAGTGCATGACCAATCAAA 59.774 45.455 0.00 0.00 38.69 2.69
453 454 1.805943 CACGAGTGCATGACCAATCAA 59.194 47.619 0.00 0.00 38.69 2.57
456 457 0.036732 ACCACGAGTGCATGACCAAT 59.963 50.000 0.00 0.00 0.00 3.16
457 458 0.179032 AACCACGAGTGCATGACCAA 60.179 50.000 0.00 0.00 0.00 3.67
458 459 0.884259 CAACCACGAGTGCATGACCA 60.884 55.000 0.00 0.00 0.00 4.02
459 460 0.602638 TCAACCACGAGTGCATGACC 60.603 55.000 0.00 0.00 0.00 4.02
461 462 2.233676 ACTATCAACCACGAGTGCATGA 59.766 45.455 0.00 10.18 0.00 3.07
462 463 2.349580 CACTATCAACCACGAGTGCATG 59.650 50.000 0.00 0.00 33.48 4.06
463 464 2.233676 TCACTATCAACCACGAGTGCAT 59.766 45.455 0.00 0.00 39.33 3.96
464 465 1.616374 TCACTATCAACCACGAGTGCA 59.384 47.619 0.00 0.00 39.33 4.57
465 466 2.263077 CTCACTATCAACCACGAGTGC 58.737 52.381 0.00 0.00 39.33 4.40
466 467 2.881074 CCTCACTATCAACCACGAGTG 58.119 52.381 0.00 0.00 40.56 3.51
467 468 1.204941 GCCTCACTATCAACCACGAGT 59.795 52.381 0.00 0.00 0.00 4.18
468 469 1.478510 AGCCTCACTATCAACCACGAG 59.521 52.381 0.00 0.00 0.00 4.18
469 470 1.557099 AGCCTCACTATCAACCACGA 58.443 50.000 0.00 0.00 0.00 4.35
471 472 2.168521 TGCTAGCCTCACTATCAACCAC 59.831 50.000 13.29 0.00 0.00 4.16
472 473 2.466846 TGCTAGCCTCACTATCAACCA 58.533 47.619 13.29 0.00 0.00 3.67
474 475 3.249559 GCATTGCTAGCCTCACTATCAAC 59.750 47.826 13.29 0.00 39.21 3.18
476 477 2.546584 CGCATTGCTAGCCTCACTATCA 60.547 50.000 13.29 0.00 0.00 2.15
477 478 2.064762 CGCATTGCTAGCCTCACTATC 58.935 52.381 13.29 0.00 0.00 2.08
478 479 1.688735 TCGCATTGCTAGCCTCACTAT 59.311 47.619 13.29 0.00 0.00 2.12
479 480 1.111277 TCGCATTGCTAGCCTCACTA 58.889 50.000 13.29 0.00 0.00 2.74
482 483 1.672363 CAATTCGCATTGCTAGCCTCA 59.328 47.619 13.29 0.00 33.57 3.86
483 484 2.396160 CAATTCGCATTGCTAGCCTC 57.604 50.000 13.29 0.00 33.57 4.70
492 493 1.216178 GCACCAGGCAATTCGCATT 59.784 52.632 0.00 0.00 45.17 3.56
493 494 2.887360 GCACCAGGCAATTCGCAT 59.113 55.556 0.00 0.00 45.17 4.73
494 495 3.736100 CGCACCAGGCAATTCGCA 61.736 61.111 0.00 0.00 45.17 5.10
498 499 1.528076 TGTGTCGCACCAGGCAATT 60.528 52.632 7.38 0.00 45.17 2.32
499 500 2.112928 TGTGTCGCACCAGGCAAT 59.887 55.556 7.38 0.00 45.17 3.56
500 501 2.899838 GTGTGTCGCACCAGGCAA 60.900 61.111 5.14 0.00 45.17 4.52
503 504 3.337889 CACGTGTGTCGCACCAGG 61.338 66.667 7.58 0.00 44.97 4.45
504 505 0.388006 TATCACGTGTGTCGCACCAG 60.388 55.000 16.51 4.00 44.97 4.00
505 506 0.665068 GTATCACGTGTGTCGCACCA 60.665 55.000 16.51 0.00 44.97 4.17
506 507 1.349259 GGTATCACGTGTGTCGCACC 61.349 60.000 16.51 10.63 44.97 5.01
507 508 1.349259 GGGTATCACGTGTGTCGCAC 61.349 60.000 16.51 6.45 44.19 5.34
508 509 1.080366 GGGTATCACGTGTGTCGCA 60.080 57.895 16.51 0.00 44.19 5.10
509 510 0.801067 GAGGGTATCACGTGTGTCGC 60.801 60.000 16.51 13.96 44.19 5.19
511 512 0.806868 TCGAGGGTATCACGTGTGTC 59.193 55.000 16.51 6.75 0.00 3.67
512 513 1.404391 GATCGAGGGTATCACGTGTGT 59.596 52.381 16.51 8.40 0.00 3.72
513 514 1.676529 AGATCGAGGGTATCACGTGTG 59.323 52.381 16.51 0.00 0.00 3.82
514 515 1.676529 CAGATCGAGGGTATCACGTGT 59.323 52.381 16.51 5.66 0.00 4.49
516 517 1.319541 CCAGATCGAGGGTATCACGT 58.680 55.000 0.00 0.00 0.00 4.49
517 518 1.319541 ACCAGATCGAGGGTATCACG 58.680 55.000 11.27 0.00 35.09 4.35
518 519 4.142790 TCTAACCAGATCGAGGGTATCAC 58.857 47.826 11.27 0.00 36.05 3.06
520 521 3.191791 GCTCTAACCAGATCGAGGGTATC 59.808 52.174 11.27 0.00 36.05 2.24
521 522 3.158676 GCTCTAACCAGATCGAGGGTAT 58.841 50.000 11.27 1.68 36.05 2.73
522 523 2.092049 TGCTCTAACCAGATCGAGGGTA 60.092 50.000 11.27 8.20 36.05 3.69
524 525 1.403814 TGCTCTAACCAGATCGAGGG 58.596 55.000 11.27 5.98 0.00 4.30
526 527 4.377839 TTCTTGCTCTAACCAGATCGAG 57.622 45.455 0.00 0.00 31.97 4.04
527 528 6.273825 GTTATTCTTGCTCTAACCAGATCGA 58.726 40.000 0.00 0.00 0.00 3.59
530 531 5.191722 TGGGTTATTCTTGCTCTAACCAGAT 59.808 40.000 11.58 0.00 44.02 2.90
531 532 4.534500 TGGGTTATTCTTGCTCTAACCAGA 59.466 41.667 11.58 0.00 44.02 3.86
533 534 4.919774 TGGGTTATTCTTGCTCTAACCA 57.080 40.909 11.58 0.00 44.02 3.67
534 535 6.584185 TTTTGGGTTATTCTTGCTCTAACC 57.416 37.500 2.76 2.76 42.34 2.85
535 536 6.586463 GCTTTTTGGGTTATTCTTGCTCTAAC 59.414 38.462 0.00 0.00 0.00 2.34
536 537 6.266558 TGCTTTTTGGGTTATTCTTGCTCTAA 59.733 34.615 0.00 0.00 0.00 2.10
537 538 5.772672 TGCTTTTTGGGTTATTCTTGCTCTA 59.227 36.000 0.00 0.00 0.00 2.43
538 539 4.588528 TGCTTTTTGGGTTATTCTTGCTCT 59.411 37.500 0.00 0.00 0.00 4.09
540 541 4.953940 TGCTTTTTGGGTTATTCTTGCT 57.046 36.364 0.00 0.00 0.00 3.91
541 542 4.213270 GGTTGCTTTTTGGGTTATTCTTGC 59.787 41.667 0.00 0.00 0.00 4.01
542 543 4.447389 CGGTTGCTTTTTGGGTTATTCTTG 59.553 41.667 0.00 0.00 0.00 3.02
543 544 4.342665 TCGGTTGCTTTTTGGGTTATTCTT 59.657 37.500 0.00 0.00 0.00 2.52
544 545 3.892588 TCGGTTGCTTTTTGGGTTATTCT 59.107 39.130 0.00 0.00 0.00 2.40
545 546 3.985279 GTCGGTTGCTTTTTGGGTTATTC 59.015 43.478 0.00 0.00 0.00 1.75
546 547 3.385111 TGTCGGTTGCTTTTTGGGTTATT 59.615 39.130 0.00 0.00 0.00 1.40
547 548 2.959707 TGTCGGTTGCTTTTTGGGTTAT 59.040 40.909 0.00 0.00 0.00 1.89
548 549 2.376109 TGTCGGTTGCTTTTTGGGTTA 58.624 42.857 0.00 0.00 0.00 2.85
549 550 1.187087 TGTCGGTTGCTTTTTGGGTT 58.813 45.000 0.00 0.00 0.00 4.11
550 551 1.187087 TTGTCGGTTGCTTTTTGGGT 58.813 45.000 0.00 0.00 0.00 4.51
552 553 5.925969 AGAAATATTGTCGGTTGCTTTTTGG 59.074 36.000 0.00 0.00 0.00 3.28
554 555 8.334632 CAAAAGAAATATTGTCGGTTGCTTTTT 58.665 29.630 0.00 0.00 32.60 1.94
555 556 7.708752 TCAAAAGAAATATTGTCGGTTGCTTTT 59.291 29.630 0.00 0.00 34.49 2.27
556 557 7.169140 GTCAAAAGAAATATTGTCGGTTGCTTT 59.831 33.333 0.00 0.00 0.00 3.51
557 558 6.640907 GTCAAAAGAAATATTGTCGGTTGCTT 59.359 34.615 0.00 0.00 0.00 3.91
579 4762 1.069090 GTCAAGTGGTGAGCCGTCA 59.931 57.895 0.00 0.00 36.74 4.35
595 4778 7.254932 GCTGGGAGAGTTGTATTTCATATTGTC 60.255 40.741 0.00 0.00 0.00 3.18
652 4835 3.740115 TCCTCCAAACAAAGTCTGCTAC 58.260 45.455 0.00 0.00 0.00 3.58
887 5099 4.155826 CGTTTCCAAGCATTAGATGTTGGA 59.844 41.667 14.97 14.97 42.81 3.53
1137 5746 1.522355 CACGGATACCAGCTGCAGG 60.522 63.158 17.12 9.78 0.00 4.85
1149 5758 1.449601 GCCCACGAACATCACGGAT 60.450 57.895 0.00 0.00 34.93 4.18
1209 5818 2.351276 GTGACGTTGGCCAGGGAT 59.649 61.111 5.11 0.00 0.00 3.85
1590 6199 1.904865 CATGCCCACCTTGTGCACT 60.905 57.895 19.41 0.00 37.92 4.40
1703 6312 1.186267 GGAGAACCCAGTCCACGTCT 61.186 60.000 0.00 0.00 32.55 4.18
1728 6337 2.046507 CGCAGCTCCTTGAAGGCT 60.047 61.111 6.30 0.00 34.61 4.58
1830 6439 1.970114 GCATCTGGGCGCTGCATAT 60.970 57.895 13.08 0.00 35.96 1.78
1831 6440 2.592574 GCATCTGGGCGCTGCATA 60.593 61.111 13.08 0.00 35.96 3.14
1857 6471 0.623723 TGGAAAAGGGGGAAGATCCG 59.376 55.000 0.00 0.00 37.43 4.18
1859 6473 4.416516 TCTTTTGGAAAAGGGGGAAGATC 58.583 43.478 11.10 0.00 44.22 2.75
1860 6474 4.485653 TCTTTTGGAAAAGGGGGAAGAT 57.514 40.909 11.10 0.00 44.22 2.40
1876 6490 7.040409 AGCATACGTGGAGAATCTTTTTCTTTT 60.040 33.333 0.00 0.00 33.73 2.27
1944 6562 1.895131 GACCACCATTCCAAACTGCAT 59.105 47.619 0.00 0.00 0.00 3.96
1950 6568 4.653341 AGTTCAAATGACCACCATTCCAAA 59.347 37.500 0.00 0.00 44.28 3.28
1965 6583 1.684983 AGCAGCACAAGCAGTTCAAAT 59.315 42.857 0.00 0.00 45.49 2.32
2099 6729 7.269316 ACTTAGAAAAGAAATTCCCGCAAAAA 58.731 30.769 0.00 0.00 36.50 1.94
2100 6730 6.811954 ACTTAGAAAAGAAATTCCCGCAAAA 58.188 32.000 0.00 0.00 36.50 2.44
2101 6731 6.399639 ACTTAGAAAAGAAATTCCCGCAAA 57.600 33.333 0.00 0.00 36.50 3.68
2102 6732 6.183360 ACAACTTAGAAAAGAAATTCCCGCAA 60.183 34.615 0.00 0.00 36.50 4.85
2103 6733 5.300792 ACAACTTAGAAAAGAAATTCCCGCA 59.699 36.000 0.00 0.00 36.50 5.69
2104 6734 5.629435 CACAACTTAGAAAAGAAATTCCCGC 59.371 40.000 0.00 0.00 36.50 6.13
2105 6735 5.629435 GCACAACTTAGAAAAGAAATTCCCG 59.371 40.000 0.00 0.00 36.50 5.14
2106 6736 6.420903 GTGCACAACTTAGAAAAGAAATTCCC 59.579 38.462 13.17 0.00 36.50 3.97
2107 6737 7.203218 AGTGCACAACTTAGAAAAGAAATTCC 58.797 34.615 21.04 0.00 34.57 3.01
2108 6738 9.170584 GTAGTGCACAACTTAGAAAAGAAATTC 57.829 33.333 21.04 0.00 40.56 2.17
2109 6739 8.903820 AGTAGTGCACAACTTAGAAAAGAAATT 58.096 29.630 21.04 0.00 40.56 1.82
2110 6740 8.345565 CAGTAGTGCACAACTTAGAAAAGAAAT 58.654 33.333 21.04 0.00 40.56 2.17
2111 6741 7.201696 CCAGTAGTGCACAACTTAGAAAAGAAA 60.202 37.037 21.04 0.00 40.56 2.52
2131 6761 6.638873 CGTATTAAGACTGCAGAATCCAGTAG 59.361 42.308 23.35 1.33 43.17 2.57
2209 6839 7.533900 CGTGAATTGTGTATTGGTGAGTTTAAG 59.466 37.037 0.00 0.00 0.00 1.85
2211 6841 6.483974 ACGTGAATTGTGTATTGGTGAGTTTA 59.516 34.615 0.00 0.00 0.00 2.01
2220 6850 9.580916 GTTAGCATATACGTGAATTGTGTATTG 57.419 33.333 0.00 0.00 31.63 1.90
2223 6853 7.436970 CCAGTTAGCATATACGTGAATTGTGTA 59.563 37.037 0.00 0.00 0.00 2.90
2225 6856 6.257849 ACCAGTTAGCATATACGTGAATTGTG 59.742 38.462 0.00 0.00 0.00 3.33
2229 6860 5.914033 ACACCAGTTAGCATATACGTGAAT 58.086 37.500 0.00 0.00 0.00 2.57
2230 6861 5.126545 AGACACCAGTTAGCATATACGTGAA 59.873 40.000 0.00 0.00 0.00 3.18
2232 6863 4.933330 AGACACCAGTTAGCATATACGTG 58.067 43.478 0.00 0.00 0.00 4.49
2246 6890 2.810852 GCAGGAAAAGAAGAGACACCAG 59.189 50.000 0.00 0.00 0.00 4.00
2257 6901 7.012327 GTGCTGTATTGTATATGCAGGAAAAGA 59.988 37.037 0.00 0.00 34.45 2.52
2340 6999 1.773653 TGGCCATGCATATGACCACTA 59.226 47.619 0.00 0.00 41.26 2.74
2527 7197 2.971330 TGGCAATGTGGGAATTTCACTT 59.029 40.909 12.13 5.40 36.21 3.16
2553 7223 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2555 7225 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2556 7226 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2559 7229 3.187700 GCGCTCTTATATTATGGGACGG 58.812 50.000 0.00 0.00 0.00 4.79
2561 7231 4.034510 GCATGCGCTCTTATATTATGGGAC 59.965 45.833 9.73 0.00 34.30 4.46
2562 7232 4.191544 GCATGCGCTCTTATATTATGGGA 58.808 43.478 9.73 0.00 34.30 4.37
2595 7437 4.202503 ACACCTGTGATGTCCAGAAGAAAT 60.203 41.667 3.94 0.00 31.38 2.17
2599 7441 2.847327 ACACCTGTGATGTCCAGAAG 57.153 50.000 3.94 0.00 31.38 2.85
2631 7477 1.081892 CACCAATCTTCTGCTCACCG 58.918 55.000 0.00 0.00 0.00 4.94
2716 7562 6.463995 ACATACCATTCCGTTAAAATGCAT 57.536 33.333 0.00 0.00 33.65 3.96
2724 7570 7.944000 TGACCTATAGTACATACCATTCCGTTA 59.056 37.037 0.00 0.00 0.00 3.18
2746 7594 7.062605 CAGTGAAATGTTAAATTCATGCTGACC 59.937 37.037 9.57 0.00 37.82 4.02
2809 7682 1.645919 AGCCCCTATTGGAACCACAAT 59.354 47.619 0.00 0.00 43.13 2.71
2917 7798 2.608752 GGTGCTGTGCAAATTCCAAGAG 60.609 50.000 0.00 0.00 41.47 2.85
2960 7854 7.510675 TCAGATAAAGAGGGGTCAAGTATTT 57.489 36.000 0.00 0.00 0.00 1.40
3172 8279 4.568072 TTGTAGCACATGGTAGGATGTT 57.432 40.909 0.00 0.00 34.18 2.71
3353 8498 3.542712 ATCGCTTGTGAACAATGTGTC 57.457 42.857 0.00 0.00 35.02 3.67
3360 8505 6.649141 AGTTATTGAACTATCGCTTGTGAACA 59.351 34.615 0.00 0.00 44.36 3.18
3364 8509 7.803189 ACAAAAGTTATTGAACTATCGCTTGTG 59.197 33.333 5.24 0.00 45.50 3.33
3366 8511 8.728088 AACAAAAGTTATTGAACTATCGCTTG 57.272 30.769 5.24 0.00 45.50 4.01
3367 8512 9.821662 GTAACAAAAGTTATTGAACTATCGCTT 57.178 29.630 5.24 0.00 45.50 4.68
3368 8513 9.216117 AGTAACAAAAGTTATTGAACTATCGCT 57.784 29.630 5.24 0.00 45.50 4.93
3369 8514 9.262472 CAGTAACAAAAGTTATTGAACTATCGC 57.738 33.333 5.31 0.00 45.50 4.58
3381 8614 9.772973 TGATCTAAGCTTCAGTAACAAAAGTTA 57.227 29.630 0.00 0.00 0.00 2.24
3431 8664 9.922305 GTAGTTTCTTGTATCTTGAATATGCAC 57.078 33.333 0.00 0.00 0.00 4.57
3458 8691 7.340743 CAGATCTTATATTATGAGACGGAGGGT 59.659 40.741 0.00 0.00 0.00 4.34
3674 10408 4.641396 CTCATTGCGTTTATATCCCCTCA 58.359 43.478 0.00 0.00 0.00 3.86
3689 10423 2.216750 ATTGGGTGTGCGCTCATTGC 62.217 55.000 16.02 2.68 38.57 3.56
3690 10424 0.179156 GATTGGGTGTGCGCTCATTG 60.179 55.000 16.02 0.00 0.00 2.82
3695 10452 1.376424 CAGAGATTGGGTGTGCGCT 60.376 57.895 9.73 0.00 0.00 5.92
3696 10453 3.044059 GCAGAGATTGGGTGTGCGC 62.044 63.158 0.00 0.00 0.00 6.09
3697 10454 1.028330 ATGCAGAGATTGGGTGTGCG 61.028 55.000 0.00 0.00 36.92 5.34
3698 10455 2.042686 TATGCAGAGATTGGGTGTGC 57.957 50.000 0.00 0.00 34.62 4.57
3699 10456 3.614092 AGTTATGCAGAGATTGGGTGTG 58.386 45.455 0.00 0.00 0.00 3.82
3700 10457 4.471386 ACTAGTTATGCAGAGATTGGGTGT 59.529 41.667 0.00 0.00 0.00 4.16
3701 10458 5.028549 ACTAGTTATGCAGAGATTGGGTG 57.971 43.478 0.00 0.00 0.00 4.61
3702 10459 6.763355 CATACTAGTTATGCAGAGATTGGGT 58.237 40.000 0.00 0.00 31.28 4.51
3714 10471 0.091344 GCGCGCGCATACTAGTTATG 59.909 55.000 46.11 10.98 40.74 1.90
3715 10472 2.431539 GCGCGCGCATACTAGTTAT 58.568 52.632 46.11 0.00 41.49 1.89
3716 10473 3.912157 GCGCGCGCATACTAGTTA 58.088 55.556 46.11 0.00 41.49 2.24
3750 10509 5.402398 GCCAAGGAATTCAATAGTGTTGAC 58.598 41.667 7.93 0.00 0.00 3.18
3784 10543 5.573219 TCCAGTCATGATGGAAGTTGATTT 58.427 37.500 18.77 0.00 43.87 2.17
3846 10605 1.201429 ATGGAGTCTTTGGGGTCGCT 61.201 55.000 0.00 0.00 0.00 4.93
3878 10637 0.036875 TCGTCTCTCTCAGCCACTCA 59.963 55.000 0.00 0.00 0.00 3.41
3885 10644 3.540617 TGATTCTCCTCGTCTCTCTCAG 58.459 50.000 0.00 0.00 0.00 3.35
3889 10648 4.081917 AGGTTTTGATTCTCCTCGTCTCTC 60.082 45.833 0.00 0.00 0.00 3.20
3899 10658 8.779354 AGTTGTATACAGAGGTTTTGATTCTC 57.221 34.615 5.56 0.00 0.00 2.87
3932 10691 2.967887 GGGGCTAGGAAAAATGATGCAT 59.032 45.455 0.00 0.00 0.00 3.96
3936 10695 2.241176 TGTCGGGGCTAGGAAAAATGAT 59.759 45.455 0.00 0.00 0.00 2.45
3938 10697 2.122783 TGTCGGGGCTAGGAAAAATG 57.877 50.000 0.00 0.00 0.00 2.32
3940 10699 3.264964 ACTTATGTCGGGGCTAGGAAAAA 59.735 43.478 0.00 0.00 0.00 1.94
3975 10734 0.320858 TCGTTTAGCATCCGCAACCA 60.321 50.000 0.00 0.00 42.27 3.67
3992 10751 1.000283 AGTTCCTCAGCAGTCACTTCG 60.000 52.381 0.00 0.00 0.00 3.79
4015 10774 1.982938 GCCAGGTCCACGAGTAGGT 60.983 63.158 0.00 0.00 0.00 3.08
4023 10782 2.041153 CAACTTTGGCCAGGTCCAC 58.959 57.895 5.11 0.00 35.50 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.