Multiple sequence alignment - TraesCS7B01G407200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G407200 chr7B 100.000 5046 0 0 1 5046 676252852 676247807 0.000000e+00 9319.0
1 TraesCS7B01G407200 chr7B 86.546 1598 183 17 2550 4120 676287191 676285599 0.000000e+00 1731.0
2 TraesCS7B01G407200 chr7B 87.470 423 39 8 2001 2412 676287987 676287568 4.570000e-130 475.0
3 TraesCS7B01G407200 chr7B 97.080 274 7 1 4423 4695 508297405 508297132 1.280000e-125 460.0
4 TraesCS7B01G407200 chr7D 88.289 1742 87 44 2 1712 597916174 597917829 0.000000e+00 1978.0
5 TraesCS7B01G407200 chr7D 87.131 1795 154 32 2422 4178 597918717 597920472 0.000000e+00 1964.0
6 TraesCS7B01G407200 chr7D 96.037 429 17 0 1994 2422 597918151 597918579 0.000000e+00 699.0
7 TraesCS7B01G407200 chr7D 81.818 561 61 20 2547 3084 597695451 597695993 2.790000e-117 433.0
8 TraesCS7B01G407200 chr7A 87.500 1680 138 33 2547 4178 690204188 690202533 0.000000e+00 1873.0
9 TraesCS7B01G407200 chr7A 83.333 744 96 11 1014 1735 690206048 690205311 0.000000e+00 662.0
10 TraesCS7B01G407200 chr7A 93.039 431 28 1 1994 2422 690205034 690204604 3.320000e-176 628.0
11 TraesCS7B01G407200 chr7A 93.080 289 12 4 4408 4694 83527724 83527442 2.810000e-112 416.0
12 TraesCS7B01G407200 chr7A 88.194 288 25 6 4416 4695 566729 566443 8.090000e-88 335.0
13 TraesCS7B01G407200 chr7A 78.842 449 43 22 549 960 690206479 690206046 6.480000e-64 255.0
14 TraesCS7B01G407200 chr3A 94.852 641 13 10 4424 5046 528602922 528603560 0.000000e+00 983.0
15 TraesCS7B01G407200 chr3A 92.915 621 20 12 4424 5041 455088021 455087422 0.000000e+00 881.0
16 TraesCS7B01G407200 chr3A 98.168 273 2 2 4424 4695 25914733 25915003 1.640000e-129 473.0
17 TraesCS7B01G407200 chr3A 97.133 279 2 2 4423 4695 697582149 697581871 2.750000e-127 466.0
18 TraesCS7B01G407200 chr3A 97.122 278 2 5 4424 4695 177686375 177686652 9.900000e-127 464.0
19 TraesCS7B01G407200 chr5B 85.116 645 70 18 4416 5039 652760976 652760337 1.980000e-178 636.0
20 TraesCS7B01G407200 chr5B 97.133 279 2 3 4423 4695 658143148 658143426 2.750000e-127 466.0
21 TraesCS7B01G407200 chrUn 98.780 328 4 0 4714 5041 218309906 218309579 7.280000e-163 584.0
22 TraesCS7B01G407200 chrUn 98.780 328 4 0 4714 5041 265475335 265475662 7.280000e-163 584.0
23 TraesCS7B01G407200 chrUn 98.780 328 4 0 4714 5041 284297057 284297384 7.280000e-163 584.0
24 TraesCS7B01G407200 chrUn 98.780 328 4 0 4714 5041 284300370 284300697 7.280000e-163 584.0
25 TraesCS7B01G407200 chrUn 98.780 328 4 0 4714 5041 398150828 398150501 7.280000e-163 584.0
26 TraesCS7B01G407200 chrUn 98.780 328 4 0 4714 5041 422216488 422216161 7.280000e-163 584.0
27 TraesCS7B01G407200 chrUn 96.562 349 8 3 4695 5041 183947398 183947052 4.380000e-160 575.0
28 TraesCS7B01G407200 chrUn 83.158 95 11 4 320 412 25991684 25991775 1.160000e-11 82.4
29 TraesCS7B01G407200 chrUn 83.158 95 11 4 320 412 26103684 26103775 1.160000e-11 82.4
30 TraesCS7B01G407200 chrUn 83.158 95 11 4 320 412 210963266 210963357 1.160000e-11 82.4
31 TraesCS7B01G407200 chrUn 87.500 72 8 1 341 412 226929165 226929095 1.160000e-11 82.4
32 TraesCS7B01G407200 chrUn 83.158 95 11 4 320 412 252999436 252999527 1.160000e-11 82.4
33 TraesCS7B01G407200 chrUn 83.158 95 11 4 320 412 254655011 254655102 1.160000e-11 82.4
34 TraesCS7B01G407200 chrUn 83.158 95 11 4 320 412 281417041 281417132 1.160000e-11 82.4
35 TraesCS7B01G407200 chrUn 87.500 72 8 1 341 412 373212121 373212051 1.160000e-11 82.4
36 TraesCS7B01G407200 chrUn 83.158 95 11 4 320 412 384336780 384336871 1.160000e-11 82.4
37 TraesCS7B01G407200 chr4A 98.905 274 2 1 4423 4695 715305280 715305553 5.870000e-134 488.0
38 TraesCS7B01G407200 chr6A 97.810 274 5 1 4423 4695 99010806 99010533 5.910000e-129 472.0
39 TraesCS7B01G407200 chr6A 86.154 130 13 4 4604 4730 553918527 553918654 8.810000e-28 135.0
40 TraesCS7B01G407200 chr5A 97.810 274 5 1 4423 4695 512118177 512118450 5.910000e-129 472.0
41 TraesCS7B01G407200 chr1B 97.080 274 7 1 4423 4695 268642612 268642339 1.280000e-125 460.0
42 TraesCS7B01G407200 chr6B 95.473 243 9 2 4416 4656 24801759 24801517 2.200000e-103 387.0
43 TraesCS7B01G407200 chr4D 90.036 281 24 4 4416 4693 100328086 100327807 1.340000e-95 361.0
44 TraesCS7B01G407200 chr3B 93.562 233 13 2 4415 4646 775569166 775569397 3.740000e-91 346.0
45 TraesCS7B01G407200 chr5D 88.298 282 31 2 4416 4695 438019375 438019656 2.250000e-88 337.0
46 TraesCS7B01G407200 chr6D 87.755 294 21 9 4416 4695 34259157 34259449 3.770000e-86 329.0
47 TraesCS7B01G407200 chr4B 86.897 290 26 10 4416 4695 5183473 5183760 1.050000e-81 315.0
48 TraesCS7B01G407200 chr2D 85.263 95 12 2 320 412 532496870 532496964 4.160000e-16 97.1
49 TraesCS7B01G407200 chr2B 84.884 86 13 0 327 412 632516495 632516580 2.500000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G407200 chr7B 676247807 676252852 5045 True 9319.0 9319 100.000000 1 5046 1 chr7B.!!$R2 5045
1 TraesCS7B01G407200 chr7B 676285599 676287987 2388 True 1103.0 1731 87.008000 2001 4120 2 chr7B.!!$R3 2119
2 TraesCS7B01G407200 chr7D 597916174 597920472 4298 False 1547.0 1978 90.485667 2 4178 3 chr7D.!!$F2 4176
3 TraesCS7B01G407200 chr7D 597695451 597695993 542 False 433.0 433 81.818000 2547 3084 1 chr7D.!!$F1 537
4 TraesCS7B01G407200 chr7A 690202533 690206479 3946 True 854.5 1873 85.678500 549 4178 4 chr7A.!!$R3 3629
5 TraesCS7B01G407200 chr3A 528602922 528603560 638 False 983.0 983 94.852000 4424 5046 1 chr3A.!!$F3 622
6 TraesCS7B01G407200 chr3A 455087422 455088021 599 True 881.0 881 92.915000 4424 5041 1 chr3A.!!$R1 617
7 TraesCS7B01G407200 chr5B 652760337 652760976 639 True 636.0 636 85.116000 4416 5039 1 chr5B.!!$R1 623
8 TraesCS7B01G407200 chrUn 284297057 284300697 3640 False 584.0 584 98.780000 4714 5041 2 chrUn.!!$F9 327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 562 0.465705 TTGCGAGATGTGGGATCTCC 59.534 55.0 6.18 0.00 40.99 3.71 F
1291 1363 0.244178 GTGACAGGGAAGACGAGGAC 59.756 60.0 0.00 0.00 0.00 3.85 F
1734 1823 0.037232 AGAGCCCGACACAAACTAGC 60.037 55.0 0.00 0.00 0.00 3.42 F
1735 1824 0.320421 GAGCCCGACACAAACTAGCA 60.320 55.0 0.00 0.00 0.00 3.49 F
3185 3877 0.170339 TCGACGACGTCTACGACCTA 59.830 55.0 24.36 7.68 43.02 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1383 1455 0.034896 TTTCTCCTCGGTCCTTGCAC 59.965 55.0 0.00 0.0 0.00 4.57 R
2888 3575 0.105964 TGTAGCCGTGTTGCTTCAGT 59.894 50.0 0.00 0.0 42.75 3.41 R
2960 3652 0.249868 CCTGCACGAGGTTGAAGTCA 60.250 55.0 0.00 0.0 37.02 3.41 R
3267 3968 0.392461 GCCTTCATGTACTCCGGCAA 60.392 55.0 0.00 0.0 37.48 4.52 R
4096 4841 0.033796 ATTCATGTGGCCTGGGTGAG 60.034 55.0 3.32 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 3.056313 GCTGCCAAAGGATCGGTGC 62.056 63.158 0.00 0.00 0.00 5.01
279 281 9.804758 TTTTAATTGTTTGAACATACCTCGTTT 57.195 25.926 0.00 0.00 38.95 3.60
439 466 8.356533 AGCATTAAAGAACAGAAACAATTGTG 57.643 30.769 12.82 1.75 35.98 3.33
534 562 0.465705 TTGCGAGATGTGGGATCTCC 59.534 55.000 6.18 0.00 40.99 3.71
572 600 5.128335 AGGATACCAGGTAGGAAAACGTAAG 59.872 44.000 5.31 0.00 41.22 2.34
780 843 3.553508 GCTGCACATGTTTCATGGAGTTT 60.554 43.478 13.15 0.00 34.55 2.66
782 845 3.243805 TGCACATGTTTCATGGAGTTTGG 60.244 43.478 13.15 0.00 0.00 3.28
783 846 3.005684 GCACATGTTTCATGGAGTTTGGA 59.994 43.478 13.15 0.00 0.00 3.53
784 847 4.801891 CACATGTTTCATGGAGTTTGGAG 58.198 43.478 13.15 0.00 0.00 3.86
785 848 4.279169 CACATGTTTCATGGAGTTTGGAGT 59.721 41.667 13.15 0.00 0.00 3.85
846 916 0.768221 ACCTGTGACCCTCCACACAT 60.768 55.000 0.00 0.00 44.21 3.21
870 940 6.021030 TCTCCCAGGTGTAACAGTAGTAATT 58.979 40.000 0.00 0.00 39.98 1.40
896 966 8.825667 TGCATCTATAAATAGCATACGTTTCA 57.174 30.769 0.00 0.00 0.00 2.69
897 967 9.435688 TGCATCTATAAATAGCATACGTTTCAT 57.564 29.630 0.00 0.00 0.00 2.57
904 974 1.950472 GCATACGTTTCATATGCGCC 58.050 50.000 4.18 0.00 43.94 6.53
905 975 1.721489 GCATACGTTTCATATGCGCCG 60.721 52.381 4.18 0.00 43.94 6.46
961 1031 5.308825 AGAAGATCACGAAAACCACATCTT 58.691 37.500 0.00 0.00 34.11 2.40
1017 1087 0.459899 TAATGGCGTCGTCTGCTCAT 59.540 50.000 0.00 0.00 0.00 2.90
1107 1177 2.683768 ACCTGGGACTATGACTCCATC 58.316 52.381 0.00 0.00 34.31 3.51
1218 1289 8.366401 TCCATTCTTTTTATTGTCAAGCAATGA 58.634 29.630 3.05 0.00 46.40 2.57
1252 1323 3.054655 GTGGGTGCAAGGTTAGGATTAGA 60.055 47.826 0.00 0.00 0.00 2.10
1291 1363 0.244178 GTGACAGGGAAGACGAGGAC 59.756 60.000 0.00 0.00 0.00 3.85
1349 1421 2.621998 GCATCATTGCTTGTGAGGCTAT 59.378 45.455 13.25 0.00 46.49 2.97
1351 1423 3.632643 TCATTGCTTGTGAGGCTATGA 57.367 42.857 8.25 8.25 44.62 2.15
1390 1462 1.746615 CGGAGATGGTGGTGCAAGG 60.747 63.158 0.00 0.00 0.00 3.61
1391 1463 1.685224 GGAGATGGTGGTGCAAGGA 59.315 57.895 0.00 0.00 0.00 3.36
1392 1464 0.678048 GGAGATGGTGGTGCAAGGAC 60.678 60.000 0.00 0.00 0.00 3.85
1407 1479 0.324830 AGGACCGAGGAGAAAGGGAG 60.325 60.000 0.00 0.00 0.00 4.30
1419 1491 1.002242 AAAGGGAGGGGGTGTGGAAA 61.002 55.000 0.00 0.00 0.00 3.13
1554 1628 5.698545 CCCAATGGAAATAGCAAAACGAAAA 59.301 36.000 0.00 0.00 0.00 2.29
1610 1684 0.095245 CACGACGTCCATGACAATGC 59.905 55.000 10.58 0.00 32.09 3.56
1638 1727 2.307934 TTGTCTTTTTGCTTGCCACC 57.692 45.000 0.00 0.00 0.00 4.61
1666 1755 1.453155 ACAATCACCCGATGCAGTTC 58.547 50.000 0.00 0.00 30.13 3.01
1671 1760 2.202932 CCCGATGCAGTTCCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
1673 1762 1.227089 CCGATGCAGTTCCCTCGAG 60.227 63.158 5.13 5.13 33.07 4.04
1676 1765 1.404181 CGATGCAGTTCCCTCGAGAAA 60.404 52.381 15.71 4.98 33.07 2.52
1713 1802 5.841957 AAACATGAAATCTACAGGGCATC 57.158 39.130 0.00 0.00 0.00 3.91
1714 1803 3.825328 ACATGAAATCTACAGGGCATCC 58.175 45.455 0.00 0.00 0.00 3.51
1715 1804 3.202818 ACATGAAATCTACAGGGCATCCA 59.797 43.478 0.00 0.00 34.83 3.41
1716 1805 3.565764 TGAAATCTACAGGGCATCCAG 57.434 47.619 0.00 0.00 34.83 3.86
1717 1806 3.114606 TGAAATCTACAGGGCATCCAGA 58.885 45.455 0.00 0.00 34.83 3.86
1725 1814 3.785859 GGCATCCAGAGCCCGACA 61.786 66.667 0.00 0.00 46.50 4.35
1726 1815 2.512515 GCATCCAGAGCCCGACAC 60.513 66.667 0.00 0.00 0.00 3.67
1728 1817 1.296392 CATCCAGAGCCCGACACAA 59.704 57.895 0.00 0.00 0.00 3.33
1729 1818 0.321564 CATCCAGAGCCCGACACAAA 60.322 55.000 0.00 0.00 0.00 2.83
1732 1821 0.320374 CCAGAGCCCGACACAAACTA 59.680 55.000 0.00 0.00 0.00 2.24
1733 1822 1.673033 CCAGAGCCCGACACAAACTAG 60.673 57.143 0.00 0.00 0.00 2.57
1734 1823 0.037232 AGAGCCCGACACAAACTAGC 60.037 55.000 0.00 0.00 0.00 3.42
1735 1824 0.320421 GAGCCCGACACAAACTAGCA 60.320 55.000 0.00 0.00 0.00 3.49
1738 1827 2.027561 AGCCCGACACAAACTAGCAATA 60.028 45.455 0.00 0.00 0.00 1.90
1739 1828 2.351726 GCCCGACACAAACTAGCAATAG 59.648 50.000 0.00 0.00 0.00 1.73
1741 1830 4.442706 CCCGACACAAACTAGCAATAGAT 58.557 43.478 0.00 0.00 0.00 1.98
1742 1831 4.876107 CCCGACACAAACTAGCAATAGATT 59.124 41.667 0.00 0.00 0.00 2.40
1743 1832 6.046593 CCCGACACAAACTAGCAATAGATTA 58.953 40.000 0.00 0.00 0.00 1.75
1745 1834 7.065324 CCCGACACAAACTAGCAATAGATTAAA 59.935 37.037 0.00 0.00 0.00 1.52
1796 1885 5.286320 GCGTATGATATGTCTGTCGGTTATG 59.714 44.000 0.00 0.00 0.00 1.90
1848 1946 5.620206 TGGCTCAGTCTCTAAAAATGTGAA 58.380 37.500 0.00 0.00 0.00 3.18
1849 1947 6.240894 TGGCTCAGTCTCTAAAAATGTGAAT 58.759 36.000 0.00 0.00 0.00 2.57
1878 1976 3.363341 AGGTTGTGTTTATTTGTGCGG 57.637 42.857 0.00 0.00 0.00 5.69
1908 2006 0.744414 ATGGGTGAGTATGTGTGCGC 60.744 55.000 0.00 0.00 0.00 6.09
1931 2037 4.119862 GTTGTGAGTGTCCGCATATGTAT 58.880 43.478 4.29 0.00 0.00 2.29
1956 2062 8.506168 TTGTGTTTCTTAATAGGAATAGGCTG 57.494 34.615 0.00 0.00 0.00 4.85
1958 2064 7.092623 TGTGTTTCTTAATAGGAATAGGCTGGA 60.093 37.037 0.00 0.00 0.00 3.86
1959 2065 7.939588 GTGTTTCTTAATAGGAATAGGCTGGAT 59.060 37.037 0.00 0.00 0.00 3.41
1962 2068 8.454859 TTCTTAATAGGAATAGGCTGGATCAT 57.545 34.615 0.00 0.00 0.00 2.45
1964 2070 9.735362 TCTTAATAGGAATAGGCTGGATCATAT 57.265 33.333 0.00 0.00 0.00 1.78
1965 2071 9.775854 CTTAATAGGAATAGGCTGGATCATATG 57.224 37.037 0.00 0.00 0.00 1.78
1966 2072 7.761981 AATAGGAATAGGCTGGATCATATGT 57.238 36.000 1.90 0.00 0.00 2.29
1968 2074 6.552445 AGGAATAGGCTGGATCATATGTAC 57.448 41.667 1.90 0.00 0.00 2.90
1969 2075 6.267635 AGGAATAGGCTGGATCATATGTACT 58.732 40.000 1.90 0.00 0.00 2.73
1970 2076 6.155910 AGGAATAGGCTGGATCATATGTACTG 59.844 42.308 1.90 0.47 0.00 2.74
1973 2079 3.070018 GGCTGGATCATATGTACTGTGC 58.930 50.000 1.90 2.30 0.00 4.57
1975 2081 4.384056 GCTGGATCATATGTACTGTGCTT 58.616 43.478 1.90 0.00 0.00 3.91
1976 2082 5.511373 GGCTGGATCATATGTACTGTGCTTA 60.511 44.000 1.90 0.00 0.00 3.09
1979 2085 7.819415 GCTGGATCATATGTACTGTGCTTATAA 59.181 37.037 1.90 0.00 0.00 0.98
1980 2086 9.881649 CTGGATCATATGTACTGTGCTTATAAT 57.118 33.333 1.90 0.00 0.00 1.28
1981 2087 9.657419 TGGATCATATGTACTGTGCTTATAATG 57.343 33.333 1.90 0.00 0.00 1.90
1988 2094 7.612065 TGTACTGTGCTTATAATGATAGGGT 57.388 36.000 0.00 0.00 0.00 4.34
1989 2095 8.715190 TGTACTGTGCTTATAATGATAGGGTA 57.285 34.615 0.00 0.00 0.00 3.69
1990 2096 8.582437 TGTACTGTGCTTATAATGATAGGGTAC 58.418 37.037 0.00 0.00 0.00 3.34
2014 2200 7.898888 ACCTGATGGAGGAGTACCATATATAT 58.101 38.462 0.00 0.00 46.33 0.86
2073 2264 7.002276 AGTTTTTAAAGGCAAGGAGCTAGTTA 58.998 34.615 0.00 0.00 44.79 2.24
2074 2265 7.175119 AGTTTTTAAAGGCAAGGAGCTAGTTAG 59.825 37.037 0.00 0.00 44.79 2.34
2076 2267 2.255770 AGGCAAGGAGCTAGTTAGGT 57.744 50.000 0.00 0.00 44.79 3.08
2077 2268 2.552367 AGGCAAGGAGCTAGTTAGGTT 58.448 47.619 0.00 0.00 44.79 3.50
2233 2432 1.749634 AGTCTCGGTGTAGCATACCAC 59.250 52.381 5.14 0.00 42.12 4.16
2254 2453 4.099266 CACTTCGAGGAGGAGATCAGAAAT 59.901 45.833 0.00 0.00 0.00 2.17
2356 2555 2.224257 GCTCAGAGGACATGGAATCTCC 60.224 54.545 0.00 0.00 36.96 3.71
2376 2575 2.460918 CGCGTCCACAGGTAAAGATAG 58.539 52.381 0.00 0.00 0.00 2.08
2567 3224 8.638873 AGTCATCCAAATCGTTGTAGATATGTA 58.361 33.333 0.00 0.00 32.40 2.29
2669 3335 5.182570 TGAGAATGGTGATTTCAAAGCAGAG 59.817 40.000 0.00 0.00 0.00 3.35
2768 3442 1.915614 AAGCAAGAGCATTCGCCGTG 61.916 55.000 0.00 0.00 45.49 4.94
2803 3477 1.224075 CTGATGCCATCCATGTCGAC 58.776 55.000 9.11 9.11 33.29 4.20
2833 3507 1.821136 GCCTGCTAGCCAAACAGAAAT 59.179 47.619 13.29 0.00 33.10 2.17
2879 3553 4.666253 GTTCCCAGGCTGCAGGCA 62.666 66.667 37.94 18.04 44.01 4.75
2888 3575 2.270257 GCTGCAGGCAACATGGTCA 61.270 57.895 17.12 0.00 41.35 4.02
2894 3581 1.538512 CAGGCAACATGGTCACTGAAG 59.461 52.381 5.47 0.00 41.41 3.02
2919 3606 1.642037 CGGCTACAACGACGAGAGGA 61.642 60.000 0.00 0.00 0.00 3.71
3014 3706 0.687354 AGCTCGTGGAGGTGACAAAT 59.313 50.000 0.00 0.00 39.04 2.32
3030 3722 2.176798 ACAAATTGGTGGAAGGAGACCA 59.823 45.455 0.00 0.00 40.61 4.02
3033 3725 1.779061 TTGGTGGAAGGAGACCAGGC 61.779 60.000 0.00 0.00 43.17 4.85
3068 3760 2.987547 TTCGCGAGGGACCGTCTT 60.988 61.111 9.59 0.00 0.00 3.01
3094 3786 2.705826 CTTCTTCTGCGCGGCATC 59.294 61.111 12.58 0.00 38.13 3.91
3158 3850 0.918983 CAAAGGTGGGCTCCCTCATA 59.081 55.000 6.50 0.00 36.94 2.15
3185 3877 0.170339 TCGACGACGTCTACGACCTA 59.830 55.000 24.36 7.68 43.02 3.08
3218 3910 2.269241 GAGCTGGCCGCCTTTACT 59.731 61.111 11.61 2.33 40.39 2.24
3233 3925 3.488721 CCTTTACTGATGTCGTCGGTAGG 60.489 52.174 12.48 10.17 46.55 3.18
3239 3931 2.126189 GTCGTCGGTAGGTGGTGC 60.126 66.667 0.00 0.00 0.00 5.01
3242 3934 2.181021 GTCGGTAGGTGGTGCGAG 59.819 66.667 0.00 0.00 0.00 5.03
3257 3949 2.579787 GAGTGGGACGACGATGCG 60.580 66.667 0.00 0.00 37.29 4.73
3258 3950 4.796231 AGTGGGACGACGATGCGC 62.796 66.667 0.00 0.00 33.86 6.09
3261 3953 3.255379 GGGACGACGATGCGCTTC 61.255 66.667 9.73 11.63 33.86 3.86
3262 3954 2.202623 GGACGACGATGCGCTTCT 60.203 61.111 19.63 8.09 33.86 2.85
3264 3956 3.131661 GACGACGATGCGCTTCTGC 62.132 63.158 19.63 10.92 33.86 4.26
3267 3968 4.742201 ACGATGCGCTTCTGCCGT 62.742 61.111 19.63 11.13 35.36 5.68
3287 3988 1.523938 GCCGGAGTACATGAAGGCC 60.524 63.158 5.05 0.00 38.72 5.19
3308 4009 0.613572 TGTACTCTGCCATCCGGTCA 60.614 55.000 0.00 0.00 33.28 4.02
3316 4017 1.141019 CCATCCGGTCAACGTCGAT 59.859 57.895 0.00 0.00 42.24 3.59
3341 4042 1.061711 GCAGCAGATCGTGTGATGAAC 59.938 52.381 3.13 0.00 32.96 3.18
3347 4048 3.107017 TCGTGTGATGAACGAGCAG 57.893 52.632 0.00 0.00 44.58 4.24
3358 4062 0.249489 AACGAGCAGGGATACGATGC 60.249 55.000 0.00 0.00 46.92 3.91
3410 4140 8.293157 AGATCCGTTGATTTTCTTCTTCTTTTC 58.707 33.333 0.00 0.00 0.00 2.29
3439 4182 3.902261 TCGATGGATTAACATGCATGC 57.098 42.857 26.53 11.82 41.31 4.06
3440 4183 3.212685 TCGATGGATTAACATGCATGCA 58.787 40.909 26.53 25.04 41.31 3.96
3441 4184 3.822167 TCGATGGATTAACATGCATGCAT 59.178 39.130 27.46 27.46 41.31 3.96
3445 4188 6.599356 ATGGATTAACATGCATGCATATGT 57.401 33.333 31.73 24.94 39.84 2.29
3446 4189 5.774630 TGGATTAACATGCATGCATATGTG 58.225 37.500 31.73 23.18 37.57 3.21
3447 4190 5.165676 GGATTAACATGCATGCATATGTGG 58.834 41.667 31.73 21.10 37.57 4.17
3487 4232 2.699954 CTGTGTAAGGCGTTCCTCATT 58.300 47.619 0.00 0.00 43.40 2.57
3521 4266 2.285368 ACGAGGGAGGGATGCCAA 60.285 61.111 5.86 0.00 0.00 4.52
3615 4360 1.004080 TCCAGCAGCAAGAGCAGAC 60.004 57.895 0.00 0.00 45.49 3.51
3634 4379 1.226773 GGATTCATGGCTGCGCAAC 60.227 57.895 13.05 6.98 0.00 4.17
3679 4424 2.508663 GCGTACCCGAAGCTGGTC 60.509 66.667 0.00 0.00 37.31 4.02
3921 4666 2.029073 CGTCTGCGTCAACCTGGT 59.971 61.111 0.00 0.00 0.00 4.00
3952 4697 3.387699 TCCAATGCATCTATCAAGACGGA 59.612 43.478 0.00 0.00 33.57 4.69
3956 4701 3.023832 TGCATCTATCAAGACGGAGACA 58.976 45.455 0.00 0.00 33.57 3.41
4039 4784 1.258982 GATCTAGACATTTGTGGCGCG 59.741 52.381 0.00 0.00 0.00 6.86
4068 4813 4.019174 AGCCTAACTTTTCATGGTGATGG 58.981 43.478 0.00 0.00 0.00 3.51
4075 4820 1.275666 TTCATGGTGATGGGACGTCT 58.724 50.000 16.46 0.00 0.00 4.18
4096 4841 0.994263 GTACAACGTACGGGCATGTC 59.006 55.000 21.06 9.05 0.00 3.06
4101 4846 1.518572 CGTACGGGCATGTCTCACC 60.519 63.158 7.57 0.00 0.00 4.02
4104 4849 1.613317 TACGGGCATGTCTCACCCAG 61.613 60.000 0.00 0.00 44.49 4.45
4130 4875 6.694411 GCCACATGAATCACAATAATCTTGAC 59.306 38.462 0.00 0.00 0.00 3.18
4173 4924 3.383620 TGGCATACAAAGCTTGTTTGG 57.616 42.857 0.00 0.00 42.22 3.28
4174 4925 2.697751 TGGCATACAAAGCTTGTTTGGT 59.302 40.909 0.00 0.00 42.22 3.67
4175 4926 3.243704 TGGCATACAAAGCTTGTTTGGTC 60.244 43.478 0.00 0.00 42.22 4.02
4176 4927 3.317150 GCATACAAAGCTTGTTTGGTCC 58.683 45.455 0.00 0.00 42.22 4.46
4177 4928 3.243704 GCATACAAAGCTTGTTTGGTCCA 60.244 43.478 0.00 0.00 42.22 4.02
4178 4929 4.561326 GCATACAAAGCTTGTTTGGTCCAT 60.561 41.667 0.00 0.00 42.22 3.41
4179 4930 5.540911 CATACAAAGCTTGTTTGGTCCATT 58.459 37.500 0.00 0.00 42.22 3.16
4180 4931 3.795877 ACAAAGCTTGTTTGGTCCATTG 58.204 40.909 0.00 0.00 42.22 2.82
4181 4932 3.132925 CAAAGCTTGTTTGGTCCATTGG 58.867 45.455 0.00 0.00 0.00 3.16
4182 4933 2.380064 AGCTTGTTTGGTCCATTGGA 57.620 45.000 0.00 0.00 0.00 3.53
4183 4934 2.242043 AGCTTGTTTGGTCCATTGGAG 58.758 47.619 5.39 0.00 29.39 3.86
4184 4935 2.158475 AGCTTGTTTGGTCCATTGGAGA 60.158 45.455 5.39 0.00 29.39 3.71
4185 4936 2.827921 GCTTGTTTGGTCCATTGGAGAT 59.172 45.455 5.39 0.00 29.39 2.75
4186 4937 4.016444 GCTTGTTTGGTCCATTGGAGATA 58.984 43.478 5.39 0.00 29.39 1.98
4187 4938 4.142381 GCTTGTTTGGTCCATTGGAGATAC 60.142 45.833 5.39 3.23 29.39 2.24
4188 4939 4.927267 TGTTTGGTCCATTGGAGATACT 57.073 40.909 5.39 0.00 29.39 2.12
4189 4940 5.255397 TGTTTGGTCCATTGGAGATACTT 57.745 39.130 5.39 0.00 29.39 2.24
4190 4941 5.009631 TGTTTGGTCCATTGGAGATACTTG 58.990 41.667 5.39 0.00 29.39 3.16
4191 4942 3.931907 TGGTCCATTGGAGATACTTGG 57.068 47.619 5.39 0.00 29.39 3.61
4192 4943 2.092429 TGGTCCATTGGAGATACTTGGC 60.092 50.000 5.39 0.00 29.39 4.52
4193 4944 2.092429 GGTCCATTGGAGATACTTGGCA 60.092 50.000 5.39 0.00 29.39 4.92
4194 4945 2.945668 GTCCATTGGAGATACTTGGCAC 59.054 50.000 5.39 0.00 29.39 5.01
4195 4946 2.846206 TCCATTGGAGATACTTGGCACT 59.154 45.455 0.00 0.00 0.00 4.40
4196 4947 3.118261 TCCATTGGAGATACTTGGCACTC 60.118 47.826 0.00 0.00 0.00 3.51
4197 4948 3.118112 CCATTGGAGATACTTGGCACTCT 60.118 47.826 0.00 0.00 0.00 3.24
4198 4949 4.101585 CCATTGGAGATACTTGGCACTCTA 59.898 45.833 0.00 0.00 0.00 2.43
4199 4950 5.295950 CATTGGAGATACTTGGCACTCTAG 58.704 45.833 0.00 0.00 0.00 2.43
4200 4951 2.695666 TGGAGATACTTGGCACTCTAGC 59.304 50.000 0.00 0.00 0.00 3.42
4201 4952 2.962421 GGAGATACTTGGCACTCTAGCT 59.038 50.000 0.00 0.00 34.17 3.32
4202 4953 3.386402 GGAGATACTTGGCACTCTAGCTT 59.614 47.826 0.00 0.00 34.17 3.74
4203 4954 4.585162 GGAGATACTTGGCACTCTAGCTTA 59.415 45.833 0.00 0.00 34.17 3.09
4204 4955 5.245075 GGAGATACTTGGCACTCTAGCTTAT 59.755 44.000 0.00 0.00 34.17 1.73
4205 4956 6.339587 AGATACTTGGCACTCTAGCTTATC 57.660 41.667 0.00 0.00 34.17 1.75
4206 4957 5.835819 AGATACTTGGCACTCTAGCTTATCA 59.164 40.000 0.00 0.00 34.17 2.15
4207 4958 6.496565 AGATACTTGGCACTCTAGCTTATCAT 59.503 38.462 0.00 0.00 34.17 2.45
4208 4959 7.671819 AGATACTTGGCACTCTAGCTTATCATA 59.328 37.037 0.00 0.00 34.17 2.15
4209 4960 6.678568 ACTTGGCACTCTAGCTTATCATAT 57.321 37.500 0.00 0.00 34.17 1.78
4210 4961 7.782897 ACTTGGCACTCTAGCTTATCATATA 57.217 36.000 0.00 0.00 34.17 0.86
4211 4962 8.195165 ACTTGGCACTCTAGCTTATCATATAA 57.805 34.615 0.00 0.00 34.17 0.98
4212 4963 8.651389 ACTTGGCACTCTAGCTTATCATATAAA 58.349 33.333 0.00 0.00 34.17 1.40
4213 4964 8.833231 TTGGCACTCTAGCTTATCATATAAAC 57.167 34.615 0.00 0.00 34.17 2.01
4214 4965 8.195165 TGGCACTCTAGCTTATCATATAAACT 57.805 34.615 0.00 0.00 34.17 2.66
4215 4966 8.307483 TGGCACTCTAGCTTATCATATAAACTC 58.693 37.037 0.00 0.00 34.17 3.01
4216 4967 8.527810 GGCACTCTAGCTTATCATATAAACTCT 58.472 37.037 0.00 0.00 34.17 3.24
4217 4968 9.567848 GCACTCTAGCTTATCATATAAACTCTC 57.432 37.037 0.00 0.00 0.00 3.20
4223 4974 8.657387 AGCTTATCATATAAACTCTCTAGCCA 57.343 34.615 0.00 0.00 0.00 4.75
4224 4975 9.094578 AGCTTATCATATAAACTCTCTAGCCAA 57.905 33.333 0.00 0.00 0.00 4.52
4225 4976 9.883142 GCTTATCATATAAACTCTCTAGCCAAT 57.117 33.333 0.00 0.00 0.00 3.16
4229 4980 9.717942 ATCATATAAACTCTCTAGCCAATTCAC 57.282 33.333 0.00 0.00 0.00 3.18
4230 4981 8.928448 TCATATAAACTCTCTAGCCAATTCACT 58.072 33.333 0.00 0.00 0.00 3.41
4231 4982 8.986847 CATATAAACTCTCTAGCCAATTCACTG 58.013 37.037 0.00 0.00 0.00 3.66
4232 4983 4.899352 AACTCTCTAGCCAATTCACTGT 57.101 40.909 0.00 0.00 0.00 3.55
4233 4984 4.899352 ACTCTCTAGCCAATTCACTGTT 57.101 40.909 0.00 0.00 0.00 3.16
4234 4985 4.573900 ACTCTCTAGCCAATTCACTGTTG 58.426 43.478 0.00 0.00 0.00 3.33
4235 4986 4.284490 ACTCTCTAGCCAATTCACTGTTGA 59.716 41.667 0.00 0.00 0.00 3.18
4236 4987 4.569943 TCTCTAGCCAATTCACTGTTGAC 58.430 43.478 0.00 0.00 0.00 3.18
4237 4988 4.284490 TCTCTAGCCAATTCACTGTTGACT 59.716 41.667 0.00 0.00 0.00 3.41
4238 4989 4.973168 TCTAGCCAATTCACTGTTGACTT 58.027 39.130 0.00 0.00 0.00 3.01
4239 4990 3.996150 AGCCAATTCACTGTTGACTTG 57.004 42.857 0.00 0.00 40.45 3.16
4240 4991 3.290710 AGCCAATTCACTGTTGACTTGT 58.709 40.909 4.61 0.00 39.59 3.16
4241 4992 4.460263 AGCCAATTCACTGTTGACTTGTA 58.540 39.130 4.61 0.00 39.59 2.41
4242 4993 5.072741 AGCCAATTCACTGTTGACTTGTAT 58.927 37.500 4.61 0.00 39.59 2.29
4243 4994 6.237901 AGCCAATTCACTGTTGACTTGTATA 58.762 36.000 4.61 0.00 39.59 1.47
4244 4995 6.149474 AGCCAATTCACTGTTGACTTGTATAC 59.851 38.462 0.00 0.00 39.59 1.47
4245 4996 6.149474 GCCAATTCACTGTTGACTTGTATACT 59.851 38.462 4.17 0.00 39.59 2.12
4246 4997 7.333423 GCCAATTCACTGTTGACTTGTATACTA 59.667 37.037 4.17 0.00 39.59 1.82
4247 4998 8.873830 CCAATTCACTGTTGACTTGTATACTAG 58.126 37.037 12.08 12.08 39.59 2.57
4248 4999 8.873830 CAATTCACTGTTGACTTGTATACTAGG 58.126 37.037 16.96 4.49 37.53 3.02
4249 5000 5.962433 TCACTGTTGACTTGTATACTAGGC 58.038 41.667 16.96 14.95 0.00 3.93
4250 5001 4.798907 CACTGTTGACTTGTATACTAGGCG 59.201 45.833 16.96 5.50 28.96 5.52
4251 5002 4.461781 ACTGTTGACTTGTATACTAGGCGT 59.538 41.667 16.96 6.06 28.96 5.68
4252 5003 5.649395 ACTGTTGACTTGTATACTAGGCGTA 59.351 40.000 16.96 5.26 28.96 4.42
4253 5004 5.883661 TGTTGACTTGTATACTAGGCGTAC 58.116 41.667 16.96 15.43 28.96 3.67
4254 5005 5.649395 TGTTGACTTGTATACTAGGCGTACT 59.351 40.000 16.96 0.00 28.96 2.73
4255 5006 6.823182 TGTTGACTTGTATACTAGGCGTACTA 59.177 38.462 16.96 6.38 28.96 1.82
4256 5007 7.500227 TGTTGACTTGTATACTAGGCGTACTAT 59.500 37.037 16.96 0.00 28.96 2.12
4257 5008 7.430992 TGACTTGTATACTAGGCGTACTATG 57.569 40.000 16.96 0.00 28.96 2.23
4258 5009 6.429078 TGACTTGTATACTAGGCGTACTATGG 59.571 42.308 16.96 0.00 28.96 2.74
4259 5010 5.182760 ACTTGTATACTAGGCGTACTATGGC 59.817 44.000 16.96 0.00 0.00 4.40
4264 5015 3.227250 GGCGTACTATGGCCCTGT 58.773 61.111 0.00 0.00 43.64 4.00
4265 5016 1.525442 GGCGTACTATGGCCCTGTT 59.475 57.895 0.00 0.00 43.64 3.16
4266 5017 0.814010 GGCGTACTATGGCCCTGTTG 60.814 60.000 0.00 0.00 43.64 3.33
4267 5018 1.436983 GCGTACTATGGCCCTGTTGC 61.437 60.000 0.00 0.92 0.00 4.17
4283 5034 3.203442 GCCATGTGCACCATCCAG 58.797 61.111 15.69 0.00 40.77 3.86
4284 5035 2.420568 GCCATGTGCACCATCCAGG 61.421 63.158 15.69 8.06 45.67 4.45
4285 5036 2.420568 CCATGTGCACCATCCAGGC 61.421 63.158 15.69 0.00 43.14 4.85
4286 5037 2.438975 ATGTGCACCATCCAGGCG 60.439 61.111 15.69 0.00 43.14 5.52
4287 5038 3.272364 ATGTGCACCATCCAGGCGT 62.272 57.895 15.69 0.00 43.14 5.68
4288 5039 1.909459 ATGTGCACCATCCAGGCGTA 61.909 55.000 15.69 0.00 43.14 4.42
4289 5040 1.815421 GTGCACCATCCAGGCGTAG 60.815 63.158 5.22 0.00 43.14 3.51
4290 5041 2.290287 TGCACCATCCAGGCGTAGT 61.290 57.895 0.00 0.00 43.14 2.73
4291 5042 0.973496 TGCACCATCCAGGCGTAGTA 60.973 55.000 0.00 0.00 43.14 1.82
4292 5043 0.393077 GCACCATCCAGGCGTAGTAT 59.607 55.000 0.00 0.00 43.14 2.12
4293 5044 1.873903 GCACCATCCAGGCGTAGTATG 60.874 57.143 0.00 0.00 43.14 2.39
4294 5045 1.048601 ACCATCCAGGCGTAGTATGG 58.951 55.000 10.61 10.61 43.14 2.74
4295 5046 0.320771 CCATCCAGGCGTAGTATGGC 60.321 60.000 7.84 7.84 35.66 4.40
4300 5051 2.965462 GGCGTAGTATGGCCGTGC 60.965 66.667 8.05 6.26 39.93 5.34
4301 5052 2.106332 GCGTAGTATGGCCGTGCT 59.894 61.111 20.10 20.10 0.00 4.40
4302 5053 2.237751 GCGTAGTATGGCCGTGCTG 61.238 63.158 24.36 10.59 0.00 4.41
4303 5054 2.237751 CGTAGTATGGCCGTGCTGC 61.238 63.158 24.36 21.59 0.00 5.25
4304 5055 2.106131 TAGTATGGCCGTGCTGCG 59.894 61.111 24.36 0.00 40.95 5.18
4332 5083 2.203209 CCCGTTGGCCCTATGAGC 60.203 66.667 0.00 0.00 0.00 4.26
4339 5090 2.190578 GCCCTATGAGCCTTGCGT 59.809 61.111 0.00 0.00 0.00 5.24
4340 5091 1.452108 GCCCTATGAGCCTTGCGTT 60.452 57.895 0.00 0.00 0.00 4.84
4341 5092 1.440145 GCCCTATGAGCCTTGCGTTC 61.440 60.000 0.00 0.00 0.00 3.95
4342 5093 0.179000 CCCTATGAGCCTTGCGTTCT 59.821 55.000 0.00 0.00 0.00 3.01
4343 5094 1.407437 CCCTATGAGCCTTGCGTTCTT 60.407 52.381 0.00 0.00 0.00 2.52
4344 5095 1.667724 CCTATGAGCCTTGCGTTCTTG 59.332 52.381 0.00 0.00 0.00 3.02
4345 5096 1.667724 CTATGAGCCTTGCGTTCTTGG 59.332 52.381 0.00 0.00 0.00 3.61
4346 5097 0.250901 ATGAGCCTTGCGTTCTTGGT 60.251 50.000 0.00 0.00 0.00 3.67
4347 5098 1.165907 TGAGCCTTGCGTTCTTGGTG 61.166 55.000 0.00 0.00 0.00 4.17
4348 5099 1.856265 GAGCCTTGCGTTCTTGGTGG 61.856 60.000 0.00 0.00 0.00 4.61
4349 5100 2.644992 CCTTGCGTTCTTGGTGGC 59.355 61.111 0.00 0.00 0.00 5.01
4350 5101 2.644992 CTTGCGTTCTTGGTGGCC 59.355 61.111 0.00 0.00 0.00 5.36
4351 5102 2.909965 TTGCGTTCTTGGTGGCCC 60.910 61.111 0.00 0.00 0.00 5.80
4352 5103 3.429372 TTGCGTTCTTGGTGGCCCT 62.429 57.895 0.00 0.00 0.00 5.19
4353 5104 3.365265 GCGTTCTTGGTGGCCCTG 61.365 66.667 0.00 0.00 0.00 4.45
4354 5105 2.113139 CGTTCTTGGTGGCCCTGT 59.887 61.111 0.00 0.00 0.00 4.00
4355 5106 1.528309 CGTTCTTGGTGGCCCTGTT 60.528 57.895 0.00 0.00 0.00 3.16
4356 5107 0.250553 CGTTCTTGGTGGCCCTGTTA 60.251 55.000 0.00 0.00 0.00 2.41
4357 5108 1.534729 GTTCTTGGTGGCCCTGTTAG 58.465 55.000 0.00 0.00 0.00 2.34
4358 5109 1.073284 GTTCTTGGTGGCCCTGTTAGA 59.927 52.381 0.00 0.00 0.00 2.10
4359 5110 0.984230 TCTTGGTGGCCCTGTTAGAG 59.016 55.000 0.00 0.00 0.00 2.43
4360 5111 0.693049 CTTGGTGGCCCTGTTAGAGT 59.307 55.000 0.00 0.00 0.00 3.24
4361 5112 1.073923 CTTGGTGGCCCTGTTAGAGTT 59.926 52.381 0.00 0.00 0.00 3.01
4362 5113 1.145571 TGGTGGCCCTGTTAGAGTTT 58.854 50.000 0.00 0.00 0.00 2.66
4363 5114 1.202879 TGGTGGCCCTGTTAGAGTTTG 60.203 52.381 0.00 0.00 0.00 2.93
4364 5115 1.534729 GTGGCCCTGTTAGAGTTTGG 58.465 55.000 0.00 0.00 0.00 3.28
4365 5116 1.073284 GTGGCCCTGTTAGAGTTTGGA 59.927 52.381 0.00 0.00 0.00 3.53
4366 5117 1.992557 TGGCCCTGTTAGAGTTTGGAT 59.007 47.619 0.00 0.00 0.00 3.41
4367 5118 2.026262 TGGCCCTGTTAGAGTTTGGATC 60.026 50.000 0.00 0.00 0.00 3.36
4368 5119 2.026262 GGCCCTGTTAGAGTTTGGATCA 60.026 50.000 0.00 0.00 0.00 2.92
4369 5120 3.274288 GCCCTGTTAGAGTTTGGATCAG 58.726 50.000 0.00 0.00 0.00 2.90
4370 5121 3.878778 CCCTGTTAGAGTTTGGATCAGG 58.121 50.000 0.00 0.00 40.13 3.86
4371 5122 3.519510 CCCTGTTAGAGTTTGGATCAGGA 59.480 47.826 9.47 0.00 42.16 3.86
4372 5123 4.019321 CCCTGTTAGAGTTTGGATCAGGAA 60.019 45.833 9.47 0.00 42.16 3.36
4373 5124 5.181748 CCTGTTAGAGTTTGGATCAGGAAG 58.818 45.833 0.00 0.00 42.16 3.46
4374 5125 5.165961 TGTTAGAGTTTGGATCAGGAAGG 57.834 43.478 0.00 0.00 0.00 3.46
4375 5126 4.844085 TGTTAGAGTTTGGATCAGGAAGGA 59.156 41.667 0.00 0.00 0.00 3.36
4376 5127 5.488919 TGTTAGAGTTTGGATCAGGAAGGAT 59.511 40.000 0.00 0.00 0.00 3.24
4377 5128 6.012508 TGTTAGAGTTTGGATCAGGAAGGATT 60.013 38.462 0.00 0.00 0.00 3.01
4378 5129 5.109500 AGAGTTTGGATCAGGAAGGATTC 57.891 43.478 0.00 0.00 46.67 2.52
4393 5144 2.267642 TTCCGTGGGAATGGCTCG 59.732 61.111 0.00 0.00 36.71 5.03
4394 5145 2.287274 TTCCGTGGGAATGGCTCGA 61.287 57.895 0.00 0.00 36.71 4.04
4395 5146 2.511600 CCGTGGGAATGGCTCGAC 60.512 66.667 0.00 0.00 0.00 4.20
4396 5147 2.885644 CGTGGGAATGGCTCGACG 60.886 66.667 0.00 0.00 0.00 5.12
4397 5148 2.577059 GTGGGAATGGCTCGACGA 59.423 61.111 0.00 0.00 0.00 4.20
4398 5149 1.519455 GTGGGAATGGCTCGACGAG 60.519 63.158 20.56 20.56 0.00 4.18
4399 5150 2.107141 GGGAATGGCTCGACGAGG 59.893 66.667 25.31 8.30 0.00 4.63
4400 5151 2.423898 GGGAATGGCTCGACGAGGA 61.424 63.158 25.31 0.00 0.00 3.71
4401 5152 1.227002 GGAATGGCTCGACGAGGAC 60.227 63.158 25.31 10.21 0.00 3.85
4402 5153 1.511305 GAATGGCTCGACGAGGACA 59.489 57.895 25.31 15.03 0.00 4.02
4403 5154 0.802607 GAATGGCTCGACGAGGACAC 60.803 60.000 25.31 9.14 0.00 3.67
4404 5155 1.532604 AATGGCTCGACGAGGACACA 61.533 55.000 25.31 10.51 0.00 3.72
4405 5156 2.126424 GGCTCGACGAGGACACAC 60.126 66.667 25.31 8.06 0.00 3.82
4406 5157 2.126424 GCTCGACGAGGACACACC 60.126 66.667 25.31 3.92 39.35 4.16
4407 5158 2.916052 GCTCGACGAGGACACACCA 61.916 63.158 25.31 0.00 42.04 4.17
4408 5159 1.210413 CTCGACGAGGACACACCAG 59.790 63.158 17.27 0.00 42.04 4.00
4409 5160 1.228033 TCGACGAGGACACACCAGA 60.228 57.895 0.00 0.00 42.04 3.86
4410 5161 1.210413 CGACGAGGACACACCAGAG 59.790 63.158 0.00 0.00 42.04 3.35
4411 5162 1.587054 GACGAGGACACACCAGAGG 59.413 63.158 0.00 0.00 42.04 3.69
4412 5163 1.152525 ACGAGGACACACCAGAGGT 60.153 57.895 0.00 0.00 42.04 3.85
4421 5172 3.891817 ACCAGAGGTGAGGTGTGG 58.108 61.111 0.00 0.00 36.60 4.17
4422 5173 1.074471 ACCAGAGGTGAGGTGTGGT 60.074 57.895 0.00 0.00 36.76 4.16
4423 5174 0.694444 ACCAGAGGTGAGGTGTGGTT 60.694 55.000 0.00 0.00 38.38 3.67
4424 5175 0.250467 CCAGAGGTGAGGTGTGGTTG 60.250 60.000 0.00 0.00 0.00 3.77
4425 5176 0.886490 CAGAGGTGAGGTGTGGTTGC 60.886 60.000 0.00 0.00 0.00 4.17
4426 5177 1.056700 AGAGGTGAGGTGTGGTTGCT 61.057 55.000 0.00 0.00 0.00 3.91
4427 5178 0.886490 GAGGTGAGGTGTGGTTGCTG 60.886 60.000 0.00 0.00 0.00 4.41
4432 5183 2.030805 GTGAGGTGTGGTTGCTGAAATC 60.031 50.000 0.00 0.00 0.00 2.17
4435 5186 2.158623 AGGTGTGGTTGCTGAAATCTGA 60.159 45.455 0.00 0.00 0.00 3.27
4436 5187 2.227388 GGTGTGGTTGCTGAAATCTGAG 59.773 50.000 0.00 0.00 0.00 3.35
4444 5195 2.220313 GCTGAAATCTGAGATGGGCTC 58.780 52.381 0.00 0.00 44.21 4.70
4467 5218 3.645434 AGGCCCATATTGCAATTTCTGA 58.355 40.909 18.75 0.00 0.00 3.27
4521 5273 2.132686 ACTAGGTGTGGTGGGAAGTTT 58.867 47.619 0.00 0.00 0.00 2.66
4539 5291 1.196104 TTAGTCCCACCCCGGAAGTG 61.196 60.000 15.49 15.49 36.56 3.16
4544 5296 2.351276 CACCCCGGAAGTGGAAGG 59.649 66.667 14.83 2.40 0.00 3.46
4545 5297 2.206036 ACCCCGGAAGTGGAAGGA 59.794 61.111 0.73 0.00 0.00 3.36
4554 5306 2.027653 GGAAGTGGAAGGAGAGTTGGAG 60.028 54.545 0.00 0.00 0.00 3.86
4555 5307 2.407340 AGTGGAAGGAGAGTTGGAGT 57.593 50.000 0.00 0.00 0.00 3.85
4556 5308 1.974236 AGTGGAAGGAGAGTTGGAGTG 59.026 52.381 0.00 0.00 0.00 3.51
4557 5309 1.002544 GTGGAAGGAGAGTTGGAGTGG 59.997 57.143 0.00 0.00 0.00 4.00
4558 5310 1.353091 GGAAGGAGAGTTGGAGTGGT 58.647 55.000 0.00 0.00 0.00 4.16
4696 5449 2.283532 AGCCGAGCTCACACCTCT 60.284 61.111 15.40 0.00 30.62 3.69
4698 5451 2.640302 GCCGAGCTCACACCTCTGA 61.640 63.158 15.40 0.00 0.00 3.27
4700 5453 0.962855 CCGAGCTCACACCTCTGAGA 60.963 60.000 15.40 0.00 40.28 3.27
4701 5454 0.170116 CGAGCTCACACCTCTGAGAC 59.830 60.000 15.40 0.00 40.28 3.36
4702 5455 0.170116 GAGCTCACACCTCTGAGACG 59.830 60.000 9.40 0.00 40.28 4.18
4703 5456 0.538516 AGCTCACACCTCTGAGACGT 60.539 55.000 6.17 0.00 40.28 4.34
4704 5457 0.109504 GCTCACACCTCTGAGACGTC 60.110 60.000 7.70 7.70 40.28 4.34
4705 5458 0.167033 CTCACACCTCTGAGACGTCG 59.833 60.000 10.46 0.00 40.28 5.12
4706 5459 1.210413 CACACCTCTGAGACGTCGG 59.790 63.158 10.46 7.42 0.00 4.79
4707 5460 1.072678 ACACCTCTGAGACGTCGGA 59.927 57.895 10.46 9.09 36.58 4.55
4709 5462 0.378962 CACCTCTGAGACGTCGGATC 59.621 60.000 10.46 2.91 37.46 3.36
4710 5463 1.090625 ACCTCTGAGACGTCGGATCG 61.091 60.000 10.46 6.05 37.46 3.69
4711 5464 1.090625 CCTCTGAGACGTCGGATCGT 61.091 60.000 10.46 5.54 46.88 3.73
4712 5465 0.026933 CTCTGAGACGTCGGATCGTG 59.973 60.000 10.46 0.40 44.21 4.35
4845 5614 1.529948 TTCCTTTGCTGCTGCTGCT 60.530 52.632 27.67 0.00 40.48 4.24
5034 5803 0.036388 GTCATCACCATGTCCACCGT 60.036 55.000 0.00 0.00 0.00 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.303643 GTTGTTGCCTCTCCCCCAG 60.304 63.158 0.00 0.00 0.00 4.45
76 77 1.450312 GTCCAATCTGCCGTGGGAG 60.450 63.158 0.22 0.22 35.46 4.30
143 145 0.806492 GCTCCTTCGATCGGGAACAC 60.806 60.000 16.41 3.96 0.00 3.32
149 151 0.375106 GCAAAAGCTCCTTCGATCGG 59.625 55.000 16.41 0.00 0.00 4.18
184 186 3.019799 TCCCAAAGATCTAGCTCGTCT 57.980 47.619 0.00 0.00 0.00 4.18
250 252 7.863375 CGAGGTATGTTCAAACAATTAAAACCA 59.137 33.333 0.00 0.00 43.03 3.67
412 439 9.683069 ACAATTGTTTCTGTTCTTTAATGCTAG 57.317 29.630 4.92 0.00 0.00 3.42
433 460 3.706600 ATGCTGGGAAAATGCACAATT 57.293 38.095 0.00 0.00 39.63 2.32
467 494 7.801716 ATGCCTAATATGTAAACGTGACATT 57.198 32.000 18.41 7.90 38.47 2.71
547 575 4.613437 ACGTTTTCCTACCTGGTATCCTA 58.387 43.478 7.07 0.00 37.07 2.94
554 582 8.502105 AATTTATCTTACGTTTTCCTACCTGG 57.498 34.615 0.00 0.00 37.10 4.45
780 843 3.257375 AGATAGCGTGTGTACAAACTCCA 59.743 43.478 14.23 0.00 0.00 3.86
782 845 4.921515 TCAAGATAGCGTGTGTACAAACTC 59.078 41.667 14.23 6.33 0.00 3.01
783 846 4.878439 TCAAGATAGCGTGTGTACAAACT 58.122 39.130 14.23 4.31 0.00 2.66
784 847 4.434330 GCTCAAGATAGCGTGTGTACAAAC 60.434 45.833 6.07 6.07 31.76 2.93
785 848 3.678072 GCTCAAGATAGCGTGTGTACAAA 59.322 43.478 0.00 0.00 31.76 2.83
846 916 3.537795 ACTACTGTTACACCTGGGAGA 57.462 47.619 0.00 0.00 0.00 3.71
870 940 9.267084 TGAAACGTATGCTATTTATAGATGCAA 57.733 29.630 0.00 0.00 37.20 4.08
893 963 0.445829 CACACAACGGCGCATATGAA 59.554 50.000 10.83 0.00 0.00 2.57
894 964 1.365368 CCACACAACGGCGCATATGA 61.365 55.000 10.83 0.00 0.00 2.15
895 965 1.062365 CCACACAACGGCGCATATG 59.938 57.895 10.83 6.89 0.00 1.78
896 966 2.760159 GCCACACAACGGCGCATAT 61.760 57.895 10.83 0.00 40.35 1.78
897 967 3.427425 GCCACACAACGGCGCATA 61.427 61.111 10.83 0.00 40.35 3.14
961 1031 4.645136 CAGTGTACCTCAGGCTAGACAATA 59.355 45.833 0.00 0.00 0.00 1.90
1017 1087 1.368641 GATCAGCGTACATGGTTGCA 58.631 50.000 0.00 0.00 0.00 4.08
1154 1224 1.064389 GGAAGAATAGCTGGGCTGGTT 60.064 52.381 0.00 0.00 40.10 3.67
1252 1323 1.077429 GAATCAAAGCCCCTCGCCT 60.077 57.895 0.00 0.00 38.78 5.52
1291 1363 0.252197 CCTTCTACCAAACCCCTCCG 59.748 60.000 0.00 0.00 0.00 4.63
1383 1455 0.034896 TTTCTCCTCGGTCCTTGCAC 59.965 55.000 0.00 0.00 0.00 4.57
1384 1456 0.321671 CTTTCTCCTCGGTCCTTGCA 59.678 55.000 0.00 0.00 0.00 4.08
1390 1462 1.331399 CCCTCCCTTTCTCCTCGGTC 61.331 65.000 0.00 0.00 0.00 4.79
1391 1463 1.306226 CCCTCCCTTTCTCCTCGGT 60.306 63.158 0.00 0.00 0.00 4.69
1392 1464 2.066999 CCCCTCCCTTTCTCCTCGG 61.067 68.421 0.00 0.00 0.00 4.63
1407 1479 2.082140 AAAAGACTTTCCACACCCCC 57.918 50.000 0.00 0.00 0.00 5.40
1419 1491 5.243060 CCAATTCTAAACGGGGAAAAAGACT 59.757 40.000 0.00 0.00 0.00 3.24
1528 1601 4.082463 TCGTTTTGCTATTTCCATTGGGTC 60.082 41.667 2.09 0.00 34.93 4.46
1530 1603 4.448537 TCGTTTTGCTATTTCCATTGGG 57.551 40.909 2.09 0.00 0.00 4.12
1610 1684 5.446340 GCAAGCAAAAAGACAAAAACTCCTG 60.446 40.000 0.00 0.00 0.00 3.86
1638 1727 4.034048 GCATCGGGTGATTGTTAGTGTTAG 59.966 45.833 0.00 0.00 30.49 2.34
1666 1755 3.936372 TGTTCTACACTTTCTCGAGGG 57.064 47.619 13.56 6.03 0.00 4.30
1713 1802 0.320374 TAGTTTGTGTCGGGCTCTGG 59.680 55.000 0.00 0.00 0.00 3.86
1714 1803 1.714794 CTAGTTTGTGTCGGGCTCTG 58.285 55.000 0.00 0.00 0.00 3.35
1715 1804 0.037232 GCTAGTTTGTGTCGGGCTCT 60.037 55.000 0.00 0.00 0.00 4.09
1716 1805 0.320421 TGCTAGTTTGTGTCGGGCTC 60.320 55.000 0.00 0.00 0.00 4.70
1717 1806 0.107831 TTGCTAGTTTGTGTCGGGCT 59.892 50.000 0.00 0.00 0.00 5.19
1720 1809 7.534085 TTAATCTATTGCTAGTTTGTGTCGG 57.466 36.000 0.00 0.00 0.00 4.79
1747 1836 9.372369 GCTAGTTTCACTACAACAAATCTATCT 57.628 33.333 0.00 0.00 0.00 1.98
1748 1837 8.321716 CGCTAGTTTCACTACAACAAATCTATC 58.678 37.037 0.00 0.00 0.00 2.08
1749 1838 7.817962 ACGCTAGTTTCACTACAACAAATCTAT 59.182 33.333 0.00 0.00 0.00 1.98
1750 1839 7.149973 ACGCTAGTTTCACTACAACAAATCTA 58.850 34.615 0.00 0.00 0.00 1.98
1751 1840 5.989777 ACGCTAGTTTCACTACAACAAATCT 59.010 36.000 0.00 0.00 0.00 2.40
1752 1841 6.224420 ACGCTAGTTTCACTACAACAAATC 57.776 37.500 0.00 0.00 0.00 2.17
1753 1842 7.601130 TCATACGCTAGTTTCACTACAACAAAT 59.399 33.333 0.00 0.00 0.00 2.32
1754 1843 6.924612 TCATACGCTAGTTTCACTACAACAAA 59.075 34.615 0.00 0.00 0.00 2.83
1755 1844 6.448852 TCATACGCTAGTTTCACTACAACAA 58.551 36.000 0.00 0.00 0.00 2.83
1758 1847 8.410912 ACATATCATACGCTAGTTTCACTACAA 58.589 33.333 0.00 0.00 0.00 2.41
1759 1848 7.937649 ACATATCATACGCTAGTTTCACTACA 58.062 34.615 0.00 0.00 0.00 2.74
1761 1850 8.290325 CAGACATATCATACGCTAGTTTCACTA 58.710 37.037 0.00 0.00 0.00 2.74
1762 1851 7.142021 CAGACATATCATACGCTAGTTTCACT 58.858 38.462 0.00 0.00 0.00 3.41
1764 1853 7.039313 ACAGACATATCATACGCTAGTTTCA 57.961 36.000 0.00 0.00 0.00 2.69
1774 1863 7.030165 CCTCATAACCGACAGACATATCATAC 58.970 42.308 0.00 0.00 0.00 2.39
1784 1873 3.021695 CCTACACCTCATAACCGACAGA 58.978 50.000 0.00 0.00 0.00 3.41
1820 1918 2.222227 TTAGAGACTGAGCCAGCAGA 57.778 50.000 5.91 0.00 39.20 4.26
1849 1947 9.621629 CACAAATAAACACAACCTATCCCTATA 57.378 33.333 0.00 0.00 0.00 1.31
1861 1959 5.244785 TGTAACCGCACAAATAAACACAA 57.755 34.783 0.00 0.00 0.00 3.33
1870 1968 4.097135 CCCATATGAATGTAACCGCACAAA 59.903 41.667 3.65 0.00 30.84 2.83
1878 1976 7.715249 ACACATACTCACCCATATGAATGTAAC 59.285 37.037 3.65 0.00 31.33 2.50
1908 2006 1.324435 CATATGCGGACACTCACAACG 59.676 52.381 0.00 0.00 0.00 4.10
1931 2037 7.556275 CCAGCCTATTCCTATTAAGAAACACAA 59.444 37.037 0.00 0.00 0.00 3.33
1950 2056 4.021104 GCACAGTACATATGATCCAGCCTA 60.021 45.833 10.38 0.00 0.00 3.93
1951 2057 3.244353 GCACAGTACATATGATCCAGCCT 60.244 47.826 10.38 0.00 0.00 4.58
1952 2058 3.070018 GCACAGTACATATGATCCAGCC 58.930 50.000 10.38 0.00 0.00 4.85
1954 2060 9.881649 ATTATAAGCACAGTACATATGATCCAG 57.118 33.333 10.38 0.00 0.00 3.86
1955 2061 9.657419 CATTATAAGCACAGTACATATGATCCA 57.343 33.333 10.38 0.00 0.00 3.41
1956 2062 9.875691 TCATTATAAGCACAGTACATATGATCC 57.124 33.333 10.38 0.00 0.00 3.36
1962 2068 9.321532 ACCCTATCATTATAAGCACAGTACATA 57.678 33.333 0.00 0.00 0.00 2.29
1964 2070 7.612065 ACCCTATCATTATAAGCACAGTACA 57.388 36.000 0.00 0.00 0.00 2.90
1965 2071 8.033626 GGTACCCTATCATTATAAGCACAGTAC 58.966 40.741 0.00 0.00 0.00 2.73
1966 2072 7.954056 AGGTACCCTATCATTATAAGCACAGTA 59.046 37.037 8.74 0.00 28.47 2.74
1968 2074 7.039011 TCAGGTACCCTATCATTATAAGCACAG 60.039 40.741 8.74 0.00 29.64 3.66
1969 2075 6.785466 TCAGGTACCCTATCATTATAAGCACA 59.215 38.462 8.74 0.00 29.64 4.57
1970 2076 7.241042 TCAGGTACCCTATCATTATAAGCAC 57.759 40.000 8.74 0.00 29.64 4.40
1973 2079 8.609617 TCCATCAGGTACCCTATCATTATAAG 57.390 38.462 8.74 0.00 35.89 1.73
1975 2081 7.035394 TCCTCCATCAGGTACCCTATCATTATA 60.035 40.741 8.74 0.00 43.95 0.98
1976 2082 5.966935 CCTCCATCAGGTACCCTATCATTAT 59.033 44.000 8.74 0.00 37.53 1.28
1979 2085 3.406152 TCCTCCATCAGGTACCCTATCAT 59.594 47.826 8.74 0.00 43.95 2.45
1980 2086 2.795360 TCCTCCATCAGGTACCCTATCA 59.205 50.000 8.74 0.00 43.95 2.15
1981 2087 3.181416 ACTCCTCCATCAGGTACCCTATC 60.181 52.174 8.74 0.00 43.95 2.08
1983 2089 2.224077 ACTCCTCCATCAGGTACCCTA 58.776 52.381 8.74 0.00 43.95 3.53
1986 2092 2.317973 GGTACTCCTCCATCAGGTACC 58.682 57.143 2.73 2.73 43.95 3.34
1987 2093 3.028094 TGGTACTCCTCCATCAGGTAC 57.972 52.381 0.00 0.00 43.95 3.34
1988 2094 3.993658 ATGGTACTCCTCCATCAGGTA 57.006 47.619 0.00 0.00 43.95 3.08
1989 2095 2.877154 ATGGTACTCCTCCATCAGGT 57.123 50.000 0.00 0.00 43.95 4.00
1990 2096 7.786943 ACATATATATGGTACTCCTCCATCAGG 59.213 40.741 23.44 0.00 43.58 3.86
1991 2097 8.774546 ACATATATATGGTACTCCTCCATCAG 57.225 38.462 23.44 0.00 43.58 2.90
2233 2432 4.935352 ATTTCTGATCTCCTCCTCGAAG 57.065 45.455 0.00 0.00 0.00 3.79
2356 2555 2.460918 CTATCTTTACCTGTGGACGCG 58.539 52.381 3.53 3.53 0.00 6.01
2430 2854 9.703892 CAACCTTGTATTGGATTGAAACATTTA 57.296 29.630 0.00 0.00 0.00 1.40
2470 2894 8.437575 TCTTTGTTTGATAAGGTTACTCTCCTT 58.562 33.333 2.81 2.81 45.72 3.36
2541 3160 7.500992 ACATATCTACAACGATTTGGATGACT 58.499 34.615 0.00 0.00 37.00 3.41
2610 3275 9.183368 TGCAATCAACATATCTACCAAACAATA 57.817 29.630 0.00 0.00 0.00 1.90
2614 3279 8.190122 TGAATGCAATCAACATATCTACCAAAC 58.810 33.333 0.85 0.00 0.00 2.93
2618 3284 6.072286 CCCTGAATGCAATCAACATATCTACC 60.072 42.308 5.85 0.00 0.00 3.18
2632 3298 3.293337 CCATTCTCATCCCTGAATGCAA 58.707 45.455 9.42 0.00 44.67 4.08
2669 3335 1.478105 GCATCAATGTCCTTGGGGTTC 59.522 52.381 0.00 0.00 35.43 3.62
2768 3442 4.143009 GGCATCAGTTCTTCGAGTTTCTTC 60.143 45.833 0.00 0.00 0.00 2.87
2803 3477 1.150081 CTAGCAGGCCCCATGAAGG 59.850 63.158 0.00 0.00 37.03 3.46
2879 3553 2.358898 GTGTTGCTTCAGTGACCATGTT 59.641 45.455 0.00 0.00 0.00 2.71
2888 3575 0.105964 TGTAGCCGTGTTGCTTCAGT 59.894 50.000 0.00 0.00 42.75 3.41
2894 3581 1.203313 GTCGTTGTAGCCGTGTTGC 59.797 57.895 0.00 0.00 0.00 4.17
2960 3652 0.249868 CCTGCACGAGGTTGAAGTCA 60.250 55.000 0.00 0.00 37.02 3.41
3014 3706 1.779061 GCCTGGTCTCCTTCCACCAA 61.779 60.000 0.00 0.00 42.28 3.67
3030 3722 2.364317 TAGCTTCTCGCCCAGCCT 60.364 61.111 0.00 0.00 40.39 4.58
3033 3725 2.105128 CGGTAGCTTCTCGCCCAG 59.895 66.667 0.00 0.00 40.39 4.45
3068 3760 0.601046 CGCAGAAGAAGCACTCCACA 60.601 55.000 0.00 0.00 0.00 4.17
3140 3832 1.216990 CTATGAGGGAGCCCACCTTT 58.783 55.000 8.53 0.00 38.79 3.11
3158 3850 2.281345 ACGTCGTCGAGGTGGACT 60.281 61.111 18.99 0.00 40.62 3.85
3185 3877 3.450559 CTCGTCGAGCGTGCCGTAT 62.451 63.158 9.74 0.00 42.13 3.06
3215 3907 2.011947 CACCTACCGACGACATCAGTA 58.988 52.381 0.00 0.00 0.00 2.74
3218 3910 0.609957 ACCACCTACCGACGACATCA 60.610 55.000 0.00 0.00 0.00 3.07
3230 3922 2.118732 TCCCACTCGCACCACCTA 59.881 61.111 0.00 0.00 0.00 3.08
3233 3925 3.986006 TCGTCCCACTCGCACCAC 61.986 66.667 0.00 0.00 0.00 4.16
3239 3931 2.579787 GCATCGTCGTCCCACTCG 60.580 66.667 0.00 0.00 0.00 4.18
3242 3934 4.796231 AGCGCATCGTCGTCCCAC 62.796 66.667 11.47 0.00 0.00 4.61
3267 3968 0.392461 GCCTTCATGTACTCCGGCAA 60.392 55.000 0.00 0.00 37.48 4.52
3287 3988 0.465705 ACCGGATGGCAGAGTACATG 59.534 55.000 9.46 0.00 39.70 3.21
3308 4009 2.125512 GCTGCCTCCATCGACGTT 60.126 61.111 0.00 0.00 0.00 3.99
3316 4017 2.285773 ACACGATCTGCTGCCTCCA 61.286 57.895 0.00 0.00 0.00 3.86
3341 4042 1.730902 CGCATCGTATCCCTGCTCG 60.731 63.158 0.00 0.00 33.75 5.03
3347 4048 2.048127 GGGAGCGCATCGTATCCC 60.048 66.667 13.73 13.73 43.52 3.85
3410 4140 6.441274 CATGTTAATCCATCGAATCCCAAAG 58.559 40.000 0.00 0.00 0.00 2.77
3439 4182 2.030274 CCACTGCATGCATCCACATATG 60.030 50.000 22.97 8.59 0.00 1.78
3440 4183 2.235891 CCACTGCATGCATCCACATAT 58.764 47.619 22.97 0.00 0.00 1.78
3441 4184 1.682740 CCACTGCATGCATCCACATA 58.317 50.000 22.97 0.00 0.00 2.29
3445 4188 2.035940 TGCCACTGCATGCATCCA 59.964 55.556 22.97 12.71 44.23 3.41
3502 4247 3.083997 GGCATCCCTCCCTCGTGT 61.084 66.667 0.00 0.00 0.00 4.49
3634 4379 4.394078 TCGTCGCCGTCTTCGTGG 62.394 66.667 0.00 0.00 35.01 4.94
3786 4531 0.175989 GGCCTCTTCCTTACTCGTGG 59.824 60.000 0.00 0.00 0.00 4.94
3788 4533 1.321074 CGGGCCTCTTCCTTACTCGT 61.321 60.000 0.84 0.00 0.00 4.18
3921 4666 1.848388 AGATGCATTGGATGGTCCTCA 59.152 47.619 0.00 0.00 37.46 3.86
3952 4697 2.581354 GGCGAGGTGATGCTGTCT 59.419 61.111 0.00 0.00 0.00 3.41
3956 4701 2.270205 CTTGGGCGAGGTGATGCT 59.730 61.111 0.00 0.00 0.00 3.79
3996 4741 1.375908 GGCGTGAAGAGCATGTCCA 60.376 57.895 0.00 0.00 35.87 4.02
4039 4784 4.636206 CCATGAAAAGTTAGGCTCTACCAC 59.364 45.833 0.00 0.00 43.14 4.16
4075 4820 0.390078 CATGCCCGTACGTTGTACCA 60.390 55.000 15.21 2.20 0.00 3.25
4096 4841 0.033796 ATTCATGTGGCCTGGGTGAG 60.034 55.000 3.32 0.00 0.00 3.51
4101 4846 1.548081 TTGTGATTCATGTGGCCTGG 58.452 50.000 3.32 0.00 0.00 4.45
4104 4849 5.779529 AGATTATTGTGATTCATGTGGCC 57.220 39.130 0.00 0.00 0.00 5.36
4130 4875 1.532437 TGCAGAAACATCGTCAGCTTG 59.468 47.619 0.00 0.00 0.00 4.01
4162 4913 2.629617 CTCCAATGGACCAAACAAGCTT 59.370 45.455 0.00 0.00 0.00 3.74
4164 4915 2.238521 TCTCCAATGGACCAAACAAGC 58.761 47.619 0.00 0.00 0.00 4.01
4165 4916 5.256474 AGTATCTCCAATGGACCAAACAAG 58.744 41.667 0.00 0.00 0.00 3.16
4167 4918 4.927267 AGTATCTCCAATGGACCAAACA 57.073 40.909 0.00 0.00 0.00 2.83
4168 4919 4.399303 CCAAGTATCTCCAATGGACCAAAC 59.601 45.833 0.00 0.00 32.82 2.93
4169 4920 4.599041 CCAAGTATCTCCAATGGACCAAA 58.401 43.478 0.00 0.00 32.82 3.28
4170 4921 3.624707 GCCAAGTATCTCCAATGGACCAA 60.625 47.826 0.00 0.00 32.82 3.67
4172 4923 2.092429 TGCCAAGTATCTCCAATGGACC 60.092 50.000 0.00 0.00 32.82 4.46
4173 4924 2.945668 GTGCCAAGTATCTCCAATGGAC 59.054 50.000 0.00 0.00 32.82 4.02
4174 4925 2.846206 AGTGCCAAGTATCTCCAATGGA 59.154 45.455 0.48 0.48 32.82 3.41
4175 4926 3.118112 AGAGTGCCAAGTATCTCCAATGG 60.118 47.826 0.00 0.00 0.00 3.16
4176 4927 4.148128 AGAGTGCCAAGTATCTCCAATG 57.852 45.455 0.00 0.00 0.00 2.82
4177 4928 4.202305 GCTAGAGTGCCAAGTATCTCCAAT 60.202 45.833 0.00 0.00 0.00 3.16
4178 4929 3.133003 GCTAGAGTGCCAAGTATCTCCAA 59.867 47.826 0.00 0.00 0.00 3.53
4179 4930 2.695666 GCTAGAGTGCCAAGTATCTCCA 59.304 50.000 0.00 0.00 0.00 3.86
4180 4931 2.962421 AGCTAGAGTGCCAAGTATCTCC 59.038 50.000 0.00 0.00 0.00 3.71
4181 4932 4.664150 AAGCTAGAGTGCCAAGTATCTC 57.336 45.455 0.00 0.00 0.00 2.75
4182 4933 5.835819 TGATAAGCTAGAGTGCCAAGTATCT 59.164 40.000 0.00 0.00 0.00 1.98
4183 4934 6.090483 TGATAAGCTAGAGTGCCAAGTATC 57.910 41.667 0.00 0.00 0.00 2.24
4184 4935 6.678568 ATGATAAGCTAGAGTGCCAAGTAT 57.321 37.500 0.00 0.00 0.00 2.12
4185 4936 7.782897 ATATGATAAGCTAGAGTGCCAAGTA 57.217 36.000 0.00 0.00 0.00 2.24
4186 4937 6.678568 ATATGATAAGCTAGAGTGCCAAGT 57.321 37.500 0.00 0.00 0.00 3.16
4187 4938 8.930760 GTTTATATGATAAGCTAGAGTGCCAAG 58.069 37.037 0.00 0.00 0.00 3.61
4188 4939 8.651389 AGTTTATATGATAAGCTAGAGTGCCAA 58.349 33.333 0.00 0.00 0.00 4.52
4189 4940 8.195165 AGTTTATATGATAAGCTAGAGTGCCA 57.805 34.615 0.00 0.00 0.00 4.92
4190 4941 8.527810 AGAGTTTATATGATAAGCTAGAGTGCC 58.472 37.037 0.00 0.00 0.00 5.01
4191 4942 9.567848 GAGAGTTTATATGATAAGCTAGAGTGC 57.432 37.037 0.00 0.00 0.00 4.40
4197 4948 9.755122 TGGCTAGAGAGTTTATATGATAAGCTA 57.245 33.333 0.00 0.00 0.00 3.32
4198 4949 8.657387 TGGCTAGAGAGTTTATATGATAAGCT 57.343 34.615 0.00 0.00 0.00 3.74
4199 4950 9.883142 ATTGGCTAGAGAGTTTATATGATAAGC 57.117 33.333 0.00 0.00 0.00 3.09
4203 4954 9.717942 GTGAATTGGCTAGAGAGTTTATATGAT 57.282 33.333 0.00 0.00 0.00 2.45
4204 4955 8.928448 AGTGAATTGGCTAGAGAGTTTATATGA 58.072 33.333 0.00 0.00 0.00 2.15
4205 4956 8.986847 CAGTGAATTGGCTAGAGAGTTTATATG 58.013 37.037 0.00 0.00 0.00 1.78
4206 4957 8.709308 ACAGTGAATTGGCTAGAGAGTTTATAT 58.291 33.333 0.00 0.00 0.00 0.86
4207 4958 8.079211 ACAGTGAATTGGCTAGAGAGTTTATA 57.921 34.615 0.00 0.00 0.00 0.98
4208 4959 6.951971 ACAGTGAATTGGCTAGAGAGTTTAT 58.048 36.000 0.00 0.00 0.00 1.40
4209 4960 6.360370 ACAGTGAATTGGCTAGAGAGTTTA 57.640 37.500 0.00 0.00 0.00 2.01
4210 4961 5.234466 ACAGTGAATTGGCTAGAGAGTTT 57.766 39.130 0.00 0.00 0.00 2.66
4211 4962 4.899352 ACAGTGAATTGGCTAGAGAGTT 57.101 40.909 0.00 0.00 0.00 3.01
4212 4963 4.284490 TCAACAGTGAATTGGCTAGAGAGT 59.716 41.667 0.00 0.00 0.00 3.24
4213 4964 4.629200 GTCAACAGTGAATTGGCTAGAGAG 59.371 45.833 0.00 0.00 34.87 3.20
4214 4965 4.284490 AGTCAACAGTGAATTGGCTAGAGA 59.716 41.667 0.00 0.00 40.18 3.10
4215 4966 4.573900 AGTCAACAGTGAATTGGCTAGAG 58.426 43.478 0.00 0.00 40.18 2.43
4216 4967 4.623932 AGTCAACAGTGAATTGGCTAGA 57.376 40.909 0.00 0.00 40.18 2.43
4223 4974 7.549488 GCCTAGTATACAAGTCAACAGTGAATT 59.451 37.037 5.50 0.00 42.60 2.17
4224 4975 7.042335 GCCTAGTATACAAGTCAACAGTGAAT 58.958 38.462 5.50 0.00 34.87 2.57
4225 4976 6.395629 GCCTAGTATACAAGTCAACAGTGAA 58.604 40.000 5.50 0.00 34.87 3.18
4226 4977 5.392703 CGCCTAGTATACAAGTCAACAGTGA 60.393 44.000 5.50 0.00 0.00 3.41
4227 4978 4.798907 CGCCTAGTATACAAGTCAACAGTG 59.201 45.833 5.50 0.00 0.00 3.66
4228 4979 4.461781 ACGCCTAGTATACAAGTCAACAGT 59.538 41.667 5.50 0.00 0.00 3.55
4229 4980 4.995124 ACGCCTAGTATACAAGTCAACAG 58.005 43.478 5.50 0.00 0.00 3.16
4230 4981 5.649395 AGTACGCCTAGTATACAAGTCAACA 59.351 40.000 5.50 0.00 37.69 3.33
4231 4982 6.129053 AGTACGCCTAGTATACAAGTCAAC 57.871 41.667 5.50 0.00 37.69 3.18
4232 4983 7.040892 CCATAGTACGCCTAGTATACAAGTCAA 60.041 40.741 5.50 0.00 37.69 3.18
4233 4984 6.429078 CCATAGTACGCCTAGTATACAAGTCA 59.571 42.308 5.50 0.00 37.69 3.41
4234 4985 6.622462 GCCATAGTACGCCTAGTATACAAGTC 60.622 46.154 5.50 0.00 37.69 3.01
4235 4986 5.182760 GCCATAGTACGCCTAGTATACAAGT 59.817 44.000 5.50 0.43 37.69 3.16
4236 4987 5.392811 GGCCATAGTACGCCTAGTATACAAG 60.393 48.000 5.50 0.00 42.21 3.16
4237 4988 4.460382 GGCCATAGTACGCCTAGTATACAA 59.540 45.833 5.50 0.00 42.21 2.41
4238 4989 4.012374 GGCCATAGTACGCCTAGTATACA 58.988 47.826 5.50 0.00 42.21 2.29
4239 4990 3.379688 GGGCCATAGTACGCCTAGTATAC 59.620 52.174 4.39 0.00 45.01 1.47
4240 4991 3.267812 AGGGCCATAGTACGCCTAGTATA 59.732 47.826 6.18 0.00 45.01 1.47
4241 4992 2.042706 AGGGCCATAGTACGCCTAGTAT 59.957 50.000 6.18 0.00 45.01 2.12
4242 4993 1.426598 AGGGCCATAGTACGCCTAGTA 59.573 52.381 6.18 0.00 45.01 1.82
4243 4994 0.187851 AGGGCCATAGTACGCCTAGT 59.812 55.000 6.18 0.00 45.01 2.57
4244 4995 0.603569 CAGGGCCATAGTACGCCTAG 59.396 60.000 6.18 0.00 45.01 3.02
4245 4996 0.105862 ACAGGGCCATAGTACGCCTA 60.106 55.000 6.18 0.00 45.01 3.93
4246 4997 0.981277 AACAGGGCCATAGTACGCCT 60.981 55.000 6.18 0.00 45.01 5.52
4247 4998 0.814010 CAACAGGGCCATAGTACGCC 60.814 60.000 6.18 1.17 44.92 5.68
4248 4999 1.436983 GCAACAGGGCCATAGTACGC 61.437 60.000 6.18 4.46 0.00 4.42
4249 5000 2.690326 GCAACAGGGCCATAGTACG 58.310 57.895 6.18 0.00 0.00 3.67
4266 5017 2.420568 CCTGGATGGTGCACATGGC 61.421 63.158 20.43 0.95 40.72 4.40
4267 5018 2.420568 GCCTGGATGGTGCACATGG 61.421 63.158 20.43 11.27 40.72 3.66
4268 5019 2.767445 CGCCTGGATGGTGCACATG 61.767 63.158 20.43 0.00 40.72 3.21
4269 5020 2.438975 CGCCTGGATGGTGCACAT 60.439 61.111 20.43 10.28 44.18 3.21
4275 5026 1.048601 CCATACTACGCCTGGATGGT 58.951 55.000 0.00 0.00 38.35 3.55
4276 5027 0.320771 GCCATACTACGCCTGGATGG 60.321 60.000 0.00 9.12 40.11 3.51
4277 5028 0.320771 GGCCATACTACGCCTGGATG 60.321 60.000 0.00 0.00 42.21 3.51
4278 5029 1.816863 CGGCCATACTACGCCTGGAT 61.817 60.000 2.24 0.00 43.38 3.41
4279 5030 2.495409 CGGCCATACTACGCCTGGA 61.495 63.158 2.24 0.00 43.38 3.86
4280 5031 2.029073 CGGCCATACTACGCCTGG 59.971 66.667 2.24 0.00 43.38 4.45
4281 5032 1.591594 CACGGCCATACTACGCCTG 60.592 63.158 2.24 0.00 43.38 4.85
4282 5033 2.812499 CACGGCCATACTACGCCT 59.188 61.111 2.24 0.00 43.38 5.52
4283 5034 2.965462 GCACGGCCATACTACGCC 60.965 66.667 2.24 0.00 42.05 5.68
4284 5035 2.106332 AGCACGGCCATACTACGC 59.894 61.111 2.24 0.00 0.00 4.42
4285 5036 2.237751 GCAGCACGGCCATACTACG 61.238 63.158 2.24 0.00 0.00 3.51
4286 5037 2.237751 CGCAGCACGGCCATACTAC 61.238 63.158 2.24 0.00 38.44 2.73
4287 5038 2.106131 CGCAGCACGGCCATACTA 59.894 61.111 2.24 0.00 38.44 1.82
4315 5066 2.203209 GCTCATAGGGCCAACGGG 60.203 66.667 6.18 0.00 37.18 5.28
4322 5073 1.440145 GAACGCAAGGCTCATAGGGC 61.440 60.000 0.00 0.00 46.39 5.19
4323 5074 0.179000 AGAACGCAAGGCTCATAGGG 59.821 55.000 0.00 0.00 46.39 3.53
4324 5075 1.667724 CAAGAACGCAAGGCTCATAGG 59.332 52.381 0.00 0.00 46.39 2.57
4325 5076 1.667724 CCAAGAACGCAAGGCTCATAG 59.332 52.381 0.00 0.00 46.39 2.23
4326 5077 1.003118 ACCAAGAACGCAAGGCTCATA 59.997 47.619 0.00 0.00 46.39 2.15
4327 5078 0.250901 ACCAAGAACGCAAGGCTCAT 60.251 50.000 0.00 0.00 46.39 2.90
4328 5079 1.148273 ACCAAGAACGCAAGGCTCA 59.852 52.632 0.00 0.00 46.39 4.26
4329 5080 1.576421 CACCAAGAACGCAAGGCTC 59.424 57.895 0.00 0.00 46.39 4.70
4330 5081 1.898574 CCACCAAGAACGCAAGGCT 60.899 57.895 0.00 0.00 46.39 4.58
4331 5082 2.644992 CCACCAAGAACGCAAGGC 59.355 61.111 0.00 0.00 46.39 4.35
4332 5083 2.644992 GCCACCAAGAACGCAAGG 59.355 61.111 0.00 0.00 46.39 3.61
4333 5084 2.919494 GGGCCACCAAGAACGCAAG 61.919 63.158 4.39 0.00 39.51 4.01
4334 5085 2.909965 GGGCCACCAAGAACGCAA 60.910 61.111 4.39 0.00 36.50 4.85
4335 5086 3.884774 AGGGCCACCAAGAACGCA 61.885 61.111 6.18 0.00 40.13 5.24
4336 5087 3.365265 CAGGGCCACCAAGAACGC 61.365 66.667 6.18 0.00 40.13 4.84
4337 5088 0.250553 TAACAGGGCCACCAAGAACG 60.251 55.000 6.18 0.00 40.13 3.95
4338 5089 1.073284 TCTAACAGGGCCACCAAGAAC 59.927 52.381 6.18 0.00 40.13 3.01
4339 5090 1.351017 CTCTAACAGGGCCACCAAGAA 59.649 52.381 6.18 0.00 40.13 2.52
4340 5091 0.984230 CTCTAACAGGGCCACCAAGA 59.016 55.000 6.18 2.21 40.13 3.02
4341 5092 0.693049 ACTCTAACAGGGCCACCAAG 59.307 55.000 6.18 0.00 40.13 3.61
4342 5093 1.145571 AACTCTAACAGGGCCACCAA 58.854 50.000 6.18 0.00 40.13 3.67
4343 5094 1.145571 AAACTCTAACAGGGCCACCA 58.854 50.000 6.18 0.00 40.13 4.17
4344 5095 1.534729 CAAACTCTAACAGGGCCACC 58.465 55.000 6.18 0.00 0.00 4.61
4345 5096 1.073284 TCCAAACTCTAACAGGGCCAC 59.927 52.381 6.18 0.00 0.00 5.01
4346 5097 1.440618 TCCAAACTCTAACAGGGCCA 58.559 50.000 6.18 0.00 0.00 5.36
4347 5098 2.026262 TGATCCAAACTCTAACAGGGCC 60.026 50.000 0.00 0.00 0.00 5.80
4348 5099 3.274288 CTGATCCAAACTCTAACAGGGC 58.726 50.000 0.00 0.00 0.00 5.19
4349 5100 3.519510 TCCTGATCCAAACTCTAACAGGG 59.480 47.826 0.00 0.00 42.21 4.45
4350 5101 4.826274 TCCTGATCCAAACTCTAACAGG 57.174 45.455 0.00 0.00 42.97 4.00
4351 5102 5.046304 TCCTTCCTGATCCAAACTCTAACAG 60.046 44.000 0.00 0.00 0.00 3.16
4352 5103 4.844085 TCCTTCCTGATCCAAACTCTAACA 59.156 41.667 0.00 0.00 0.00 2.41
4353 5104 5.422214 TCCTTCCTGATCCAAACTCTAAC 57.578 43.478 0.00 0.00 0.00 2.34
4354 5105 6.353082 GGAATCCTTCCTGATCCAAACTCTAA 60.353 42.308 0.00 0.00 46.57 2.10
4355 5106 5.131142 GGAATCCTTCCTGATCCAAACTCTA 59.869 44.000 0.00 0.00 46.57 2.43
4356 5107 4.080072 GGAATCCTTCCTGATCCAAACTCT 60.080 45.833 0.00 0.00 46.57 3.24
4357 5108 4.203226 GGAATCCTTCCTGATCCAAACTC 58.797 47.826 0.00 0.00 46.57 3.01
4358 5109 4.242336 GGAATCCTTCCTGATCCAAACT 57.758 45.455 0.00 0.00 46.57 2.66
4376 5127 2.267642 CGAGCCATTCCCACGGAA 59.732 61.111 0.00 0.00 46.39 4.30
4377 5128 2.682136 TCGAGCCATTCCCACGGA 60.682 61.111 0.00 0.00 0.00 4.69
4378 5129 2.511600 GTCGAGCCATTCCCACGG 60.512 66.667 0.00 0.00 0.00 4.94
4379 5130 2.885644 CGTCGAGCCATTCCCACG 60.886 66.667 0.00 0.00 0.00 4.94
4380 5131 1.519455 CTCGTCGAGCCATTCCCAC 60.519 63.158 9.74 0.00 0.00 4.61
4381 5132 2.721167 CCTCGTCGAGCCATTCCCA 61.721 63.158 17.02 0.00 0.00 4.37
4382 5133 2.107141 CCTCGTCGAGCCATTCCC 59.893 66.667 17.02 0.00 0.00 3.97
4383 5134 1.227002 GTCCTCGTCGAGCCATTCC 60.227 63.158 17.02 0.00 0.00 3.01
4384 5135 0.802607 GTGTCCTCGTCGAGCCATTC 60.803 60.000 17.02 5.32 0.00 2.67
4385 5136 1.215647 GTGTCCTCGTCGAGCCATT 59.784 57.895 17.02 0.00 0.00 3.16
4386 5137 1.977009 TGTGTCCTCGTCGAGCCAT 60.977 57.895 17.02 0.00 0.00 4.40
4387 5138 2.596338 TGTGTCCTCGTCGAGCCA 60.596 61.111 17.02 12.10 0.00 4.75
4388 5139 2.126424 GTGTGTCCTCGTCGAGCC 60.126 66.667 17.02 9.65 0.00 4.70
4389 5140 2.126424 GGTGTGTCCTCGTCGAGC 60.126 66.667 17.02 4.86 0.00 5.03
4390 5141 1.210413 CTGGTGTGTCCTCGTCGAG 59.790 63.158 15.53 15.53 37.07 4.04
4391 5142 1.228033 TCTGGTGTGTCCTCGTCGA 60.228 57.895 0.00 0.00 37.07 4.20
4392 5143 1.210413 CTCTGGTGTGTCCTCGTCG 59.790 63.158 0.00 0.00 37.07 5.12
4393 5144 1.179814 ACCTCTGGTGTGTCCTCGTC 61.180 60.000 0.00 0.00 32.98 4.20
4394 5145 1.152525 ACCTCTGGTGTGTCCTCGT 60.153 57.895 0.00 0.00 32.98 4.18
4395 5146 3.778955 ACCTCTGGTGTGTCCTCG 58.221 61.111 0.00 0.00 32.98 4.63
4404 5155 0.694444 AACCACACCTCACCTCTGGT 60.694 55.000 0.00 0.00 36.77 4.00
4405 5156 0.250467 CAACCACACCTCACCTCTGG 60.250 60.000 0.00 0.00 0.00 3.86
4406 5157 0.886490 GCAACCACACCTCACCTCTG 60.886 60.000 0.00 0.00 0.00 3.35
4407 5158 1.056700 AGCAACCACACCTCACCTCT 61.057 55.000 0.00 0.00 0.00 3.69
4408 5159 0.886490 CAGCAACCACACCTCACCTC 60.886 60.000 0.00 0.00 0.00 3.85
4409 5160 1.149174 CAGCAACCACACCTCACCT 59.851 57.895 0.00 0.00 0.00 4.00
4410 5161 0.465460 TTCAGCAACCACACCTCACC 60.465 55.000 0.00 0.00 0.00 4.02
4411 5162 1.388547 TTTCAGCAACCACACCTCAC 58.611 50.000 0.00 0.00 0.00 3.51
4412 5163 2.158623 AGATTTCAGCAACCACACCTCA 60.159 45.455 0.00 0.00 0.00 3.86
4413 5164 2.227388 CAGATTTCAGCAACCACACCTC 59.773 50.000 0.00 0.00 0.00 3.85
4414 5165 2.158623 TCAGATTTCAGCAACCACACCT 60.159 45.455 0.00 0.00 0.00 4.00
4415 5166 2.227388 CTCAGATTTCAGCAACCACACC 59.773 50.000 0.00 0.00 0.00 4.16
4416 5167 3.141398 TCTCAGATTTCAGCAACCACAC 58.859 45.455 0.00 0.00 0.00 3.82
4417 5168 3.490439 TCTCAGATTTCAGCAACCACA 57.510 42.857 0.00 0.00 0.00 4.17
4418 5169 3.128242 CCATCTCAGATTTCAGCAACCAC 59.872 47.826 0.00 0.00 0.00 4.16
4419 5170 3.349927 CCATCTCAGATTTCAGCAACCA 58.650 45.455 0.00 0.00 0.00 3.67
4420 5171 2.686915 CCCATCTCAGATTTCAGCAACC 59.313 50.000 0.00 0.00 0.00 3.77
4421 5172 2.098770 GCCCATCTCAGATTTCAGCAAC 59.901 50.000 0.00 0.00 0.00 4.17
4422 5173 2.025605 AGCCCATCTCAGATTTCAGCAA 60.026 45.455 0.00 0.00 0.00 3.91
4423 5174 1.562942 AGCCCATCTCAGATTTCAGCA 59.437 47.619 0.00 0.00 0.00 4.41
4424 5175 2.158784 AGAGCCCATCTCAGATTTCAGC 60.159 50.000 0.00 0.00 44.35 4.26
4425 5176 3.842007 AGAGCCCATCTCAGATTTCAG 57.158 47.619 0.00 0.00 44.35 3.02
4426 5177 3.645212 CCTAGAGCCCATCTCAGATTTCA 59.355 47.826 0.00 0.00 44.35 2.69
4427 5178 3.556843 GCCTAGAGCCCATCTCAGATTTC 60.557 52.174 0.00 0.00 44.35 2.17
4444 5195 4.828939 TCAGAAATTGCAATATGGGCCTAG 59.171 41.667 13.39 0.00 0.00 3.02
4456 5207 7.605449 CCCTTAGAGATTTTTCAGAAATTGCA 58.395 34.615 0.00 0.00 0.00 4.08
4467 5218 4.026052 CACATGGGCCCTTAGAGATTTTT 58.974 43.478 25.70 0.00 0.00 1.94
4521 5273 1.611261 CACTTCCGGGGTGGGACTA 60.611 63.158 16.94 0.00 38.76 2.59
4539 5291 1.353091 ACCACTCCAACTCTCCTTCC 58.647 55.000 0.00 0.00 0.00 3.46
4541 5293 6.296489 CCTTATAAACCACTCCAACTCTCCTT 60.296 42.308 0.00 0.00 0.00 3.36
4544 5296 5.045797 ACCCTTATAAACCACTCCAACTCTC 60.046 44.000 0.00 0.00 0.00 3.20
4545 5297 4.850386 ACCCTTATAAACCACTCCAACTCT 59.150 41.667 0.00 0.00 0.00 3.24
4554 5306 8.098912 TGTAGAAGAGAAACCCTTATAAACCAC 58.901 37.037 0.00 0.00 0.00 4.16
4555 5307 8.209802 TGTAGAAGAGAAACCCTTATAAACCA 57.790 34.615 0.00 0.00 0.00 3.67
4556 5308 9.110502 CATGTAGAAGAGAAACCCTTATAAACC 57.889 37.037 0.00 0.00 0.00 3.27
4557 5309 8.613482 GCATGTAGAAGAGAAACCCTTATAAAC 58.387 37.037 0.00 0.00 0.00 2.01
4558 5310 8.548877 AGCATGTAGAAGAGAAACCCTTATAAA 58.451 33.333 0.00 0.00 0.00 1.40
4592 5344 2.168313 GAGGGCCTCTTCTCTTCTCAAG 59.832 54.545 26.44 0.00 0.00 3.02
4695 5448 1.062685 CCACGATCCGACGTCTCAG 59.937 63.158 14.70 2.27 44.76 3.35
4696 5449 2.404186 CCCACGATCCGACGTCTCA 61.404 63.158 14.70 0.00 44.76 3.27
4698 5451 2.045634 TCCCACGATCCGACGTCT 60.046 61.111 14.70 0.00 44.76 4.18
4700 5453 3.807538 CGTCCCACGATCCGACGT 61.808 66.667 9.78 0.00 46.05 4.34
4702 5455 2.202570 CACGTCCCACGATCCGAC 60.203 66.667 2.48 0.00 46.05 4.79
4703 5456 3.445687 CCACGTCCCACGATCCGA 61.446 66.667 2.48 0.00 46.05 4.55
4704 5457 4.508128 CCCACGTCCCACGATCCG 62.508 72.222 2.48 0.00 46.05 4.18
4705 5458 3.366739 GACCCACGTCCCACGATCC 62.367 68.421 2.48 0.00 46.05 3.36
4706 5459 2.183555 GACCCACGTCCCACGATC 59.816 66.667 2.48 0.00 46.05 3.69
4707 5460 3.755628 CGACCCACGTCCCACGAT 61.756 66.667 2.48 0.00 46.05 3.73
4710 5463 4.736896 GCTCGACCCACGTCCCAC 62.737 72.222 0.00 0.00 43.13 4.61
4731 5495 4.056125 CAGCCGCGTGGAGAGACA 62.056 66.667 21.76 0.00 37.49 3.41
4821 5590 1.069090 AGCAGCAAAGGAACGACGA 59.931 52.632 0.00 0.00 0.00 4.20
4845 5614 3.399181 GGGATGGAGTCACCGGCA 61.399 66.667 0.00 0.00 42.61 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.