Multiple sequence alignment - TraesCS7B01G406000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G406000 chr7B 100.000 3911 0 0 1 3911 674208162 674204252 0.000000e+00 7223.0
1 TraesCS7B01G406000 chr7B 91.667 432 36 0 1199 1630 674236296 674236727 2.010000e-167 599.0
2 TraesCS7B01G406000 chr7B 90.000 180 13 5 1957 2135 674236728 674236903 1.090000e-55 228.0
3 TraesCS7B01G406000 chr7B 86.777 121 14 2 2279 2398 176003512 176003393 2.450000e-27 134.0
4 TraesCS7B01G406000 chr7D 88.711 1125 81 25 339 1422 596112662 596111543 0.000000e+00 1332.0
5 TraesCS7B01G406000 chr7D 91.774 851 39 8 2809 3632 596110467 596109621 0.000000e+00 1155.0
6 TraesCS7B01G406000 chr7D 89.412 425 45 0 1210 1634 51953956 51953532 1.600000e-148 536.0
7 TraesCS7B01G406000 chr7D 86.034 358 38 7 1 346 596113061 596112704 1.330000e-99 374.0
8 TraesCS7B01G406000 chr7D 94.416 197 10 1 1937 2133 596111011 596110816 6.350000e-78 302.0
9 TraesCS7B01G406000 chr7D 92.179 179 13 1 1957 2135 596124225 596124402 6.490000e-63 252.0
10 TraesCS7B01G406000 chr7D 86.667 210 14 5 3714 3911 596109581 596109374 1.830000e-53 220.0
11 TraesCS7B01G406000 chr7D 88.957 163 16 2 1957 2118 596304346 596304507 2.380000e-47 200.0
12 TraesCS7B01G406000 chr7D 84.483 174 27 0 1956 2129 51953362 51953189 5.200000e-39 172.0
13 TraesCS7B01G406000 chr7D 84.483 174 27 0 1956 2129 52233627 52233800 5.200000e-39 172.0
14 TraesCS7B01G406000 chr7D 77.273 286 41 18 2820 3094 51952459 51952187 3.150000e-31 147.0
15 TraesCS7B01G406000 chr7D 92.632 95 7 0 2820 2914 52235882 52235976 1.900000e-28 137.0
16 TraesCS7B01G406000 chr7D 86.066 122 16 1 2276 2397 13127164 13127044 3.170000e-26 130.0
17 TraesCS7B01G406000 chr7D 90.526 95 9 0 2820 2914 52037073 52037167 4.100000e-25 126.0
18 TraesCS7B01G406000 chr7D 90.526 95 9 0 2820 2914 52295254 52295348 4.100000e-25 126.0
19 TraesCS7B01G406000 chr7D 93.220 59 2 2 2168 2225 631523720 631523663 6.960000e-13 86.1
20 TraesCS7B01G406000 chr7A 93.139 685 29 10 3242 3911 689264775 689264094 0.000000e+00 989.0
21 TraesCS7B01G406000 chr7A 85.760 625 69 15 1018 1630 689282059 689282675 0.000000e+00 643.0
22 TraesCS7B01G406000 chr7A 86.837 509 54 9 1210 1717 54772699 54772203 1.230000e-154 556.0
23 TraesCS7B01G406000 chr7A 90.118 425 42 0 1210 1634 54758348 54757924 1.590000e-153 553.0
24 TraesCS7B01G406000 chr7A 83.628 623 66 25 834 1422 689268452 689267832 1.590000e-153 553.0
25 TraesCS7B01G406000 chr7A 84.330 351 37 11 339 673 689268970 689268622 1.050000e-85 327.0
26 TraesCS7B01G406000 chr7A 88.519 270 28 3 72 339 689269289 689269021 1.360000e-84 324.0
27 TraesCS7B01G406000 chr7A 93.855 179 10 1 1957 2135 689282676 689282853 6.440000e-68 268.0
28 TraesCS7B01G406000 chr7A 79.387 359 47 16 348 704 657156987 657156654 1.090000e-55 228.0
29 TraesCS7B01G406000 chr7A 91.034 145 11 2 1937 2080 689265161 689265018 1.110000e-45 195.0
30 TraesCS7B01G406000 chr7A 86.207 174 24 0 1956 2129 54757754 54757581 5.160000e-44 189.0
31 TraesCS7B01G406000 chr7A 86.207 174 24 0 1956 2129 54772047 54771874 5.160000e-44 189.0
32 TraesCS7B01G406000 chr7A 90.826 109 10 0 2809 2917 689283375 689283483 3.150000e-31 147.0
33 TraesCS7B01G406000 chr7A 89.286 112 8 2 2820 2927 54771169 54771058 1.900000e-28 137.0
34 TraesCS7B01G406000 chr4A 84.396 596 78 12 1048 1634 666923538 666924127 4.380000e-159 571.0
35 TraesCS7B01G406000 chr4A 87.033 509 56 7 1210 1717 666484466 666483967 2.040000e-157 566.0
36 TraesCS7B01G406000 chr4A 90.353 425 41 0 1210 1634 666540314 666539890 3.410000e-155 558.0
37 TraesCS7B01G406000 chr4A 80.223 718 89 34 65 743 615115592 615114889 1.260000e-134 490.0
38 TraesCS7B01G406000 chr4A 85.795 176 21 3 1956 2129 666483826 666483653 2.400000e-42 183.0
39 TraesCS7B01G406000 chr4A 83.333 174 29 0 1956 2129 666539713 666539540 1.120000e-35 161.0
40 TraesCS7B01G406000 chr4A 89.286 112 8 2 2820 2927 666538868 666538757 1.900000e-28 137.0
41 TraesCS7B01G406000 chr4A 91.579 95 8 0 2820 2914 666813400 666813494 8.820000e-27 132.0
42 TraesCS7B01G406000 chr4A 96.364 55 1 1 2168 2222 712849255 712849308 5.380000e-14 89.8
43 TraesCS7B01G406000 chr4A 94.643 56 2 1 2172 2226 516579004 516578949 6.960000e-13 86.1
44 TraesCS7B01G406000 chr5D 85.664 286 37 3 65 346 553011876 553012161 8.220000e-77 298.0
45 TraesCS7B01G406000 chr5D 84.828 145 19 1 637 781 553023577 553023718 4.070000e-30 143.0
46 TraesCS7B01G406000 chr5D 85.156 128 15 3 2273 2397 320886162 320886288 1.140000e-25 128.0
47 TraesCS7B01G406000 chr5B 82.883 333 47 8 20 346 315831820 315832148 1.370000e-74 291.0
48 TraesCS7B01G406000 chr5B 88.333 120 12 2 2280 2398 38365123 38365241 4.070000e-30 143.0
49 TraesCS7B01G406000 chr2D 78.700 446 60 22 65 483 481149240 481149677 8.330000e-67 265.0
50 TraesCS7B01G406000 chr2D 85.463 227 25 7 123 346 453785293 453785514 3.040000e-56 230.0
51 TraesCS7B01G406000 chr2D 96.364 55 1 1 2168 2222 27265032 27264979 5.380000e-14 89.8
52 TraesCS7B01G406000 chr3B 83.256 215 28 8 124 334 696580655 696580865 1.430000e-44 191.0
53 TraesCS7B01G406000 chr3A 82.018 228 36 5 115 338 623990996 623991222 5.160000e-44 189.0
54 TraesCS7B01G406000 chr3D 81.172 239 34 10 115 346 481276105 481276339 8.630000e-42 182.0
55 TraesCS7B01G406000 chr4B 83.158 190 24 8 341 526 2457959 2458144 2.420000e-37 167.0
56 TraesCS7B01G406000 chr4B 86.179 123 14 3 2277 2397 254413244 254413365 3.170000e-26 130.0
57 TraesCS7B01G406000 chr1D 88.000 125 11 4 2277 2398 465887266 465887143 1.130000e-30 145.0
58 TraesCS7B01G406000 chr1D 83.942 137 18 4 2268 2401 284915816 284915951 1.140000e-25 128.0
59 TraesCS7B01G406000 chr4D 86.508 126 12 5 2274 2397 400680688 400680566 2.450000e-27 134.0
60 TraesCS7B01G406000 chr1B 87.826 115 12 2 2284 2397 332136273 332136160 2.450000e-27 134.0
61 TraesCS7B01G406000 chr1B 96.364 55 1 1 2168 2222 623732062 623732115 5.380000e-14 89.8
62 TraesCS7B01G406000 chr1B 96.296 54 1 1 2168 2221 174697471 174697419 1.940000e-13 87.9
63 TraesCS7B01G406000 chr6B 98.077 52 0 1 2168 2219 591252200 591252250 5.380000e-14 89.8
64 TraesCS7B01G406000 chr6B 95.349 43 2 0 8 50 532168879 532168837 7.010000e-08 69.4
65 TraesCS7B01G406000 chr5A 94.737 57 2 1 2168 2224 407937623 407937568 1.940000e-13 87.9
66 TraesCS7B01G406000 chr1A 96.296 54 1 1 2168 2221 535143381 535143329 1.940000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G406000 chr7B 674204252 674208162 3910 True 7223.000000 7223 100.000000 1 3911 1 chr7B.!!$R2 3910
1 TraesCS7B01G406000 chr7B 674236296 674236903 607 False 413.500000 599 90.833500 1199 2135 2 chr7B.!!$F1 936
2 TraesCS7B01G406000 chr7D 596109374 596113061 3687 True 676.600000 1332 89.520400 1 3911 5 chr7D.!!$R4 3910
3 TraesCS7B01G406000 chr7D 51952187 51953956 1769 True 285.000000 536 83.722667 1210 3094 3 chr7D.!!$R3 1884
4 TraesCS7B01G406000 chr7A 689264094 689269289 5195 True 477.600000 989 88.130000 72 3911 5 chr7A.!!$R4 3839
5 TraesCS7B01G406000 chr7A 54757581 54758348 767 True 371.000000 553 88.162500 1210 2129 2 chr7A.!!$R2 919
6 TraesCS7B01G406000 chr7A 689282059 689283483 1424 False 352.666667 643 90.147000 1018 2917 3 chr7A.!!$F1 1899
7 TraesCS7B01G406000 chr7A 54771058 54772699 1641 True 294.000000 556 87.443333 1210 2927 3 chr7A.!!$R3 1717
8 TraesCS7B01G406000 chr4A 666923538 666924127 589 False 571.000000 571 84.396000 1048 1634 1 chr4A.!!$F2 586
9 TraesCS7B01G406000 chr4A 615114889 615115592 703 True 490.000000 490 80.223000 65 743 1 chr4A.!!$R2 678
10 TraesCS7B01G406000 chr4A 666483653 666484466 813 True 374.500000 566 86.414000 1210 2129 2 chr4A.!!$R3 919
11 TraesCS7B01G406000 chr4A 666538757 666540314 1557 True 285.333333 558 87.657333 1210 2927 3 chr4A.!!$R4 1717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 732 0.833287 ACTATGGCAGGATTCGTGCT 59.167 50.0 25.44 13.07 43.57 4.40 F
2303 5249 0.107361 CCCTTCGCCCGGAATTAGTT 60.107 55.0 0.73 0.00 33.26 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2381 5327 0.105039 GCAATACTCCCTCCACTCCG 59.895 60.0 0.0 0.0 0.00 4.63 R
3160 6369 0.467290 TGGTTGACCCCAGTTTCTGC 60.467 55.0 0.0 0.0 34.29 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
219 234 4.493547 TCACTGGCTTGTTTCACAAAAAG 58.506 39.130 0.00 0.00 37.69 2.27
220 235 3.062504 CACTGGCTTGTTTCACAAAAAGC 59.937 43.478 1.77 1.77 37.69 3.51
227 242 3.114809 TGTTTCACAAAAAGCGCATCTG 58.885 40.909 11.47 3.47 0.00 2.90
233 248 3.180980 CACAAAAAGCGCATCTGTTTCAG 59.819 43.478 11.47 0.00 29.83 3.02
400 467 6.258230 TCACTGATGAATTGTGAAATGTCC 57.742 37.500 0.00 0.00 37.71 4.02
443 512 6.764308 ATGTATCCAGGTTTGATCTTGTTG 57.236 37.500 0.00 0.00 0.00 3.33
462 531 3.788227 TGTAAAGGTCTTGATGCCAGT 57.212 42.857 0.00 0.00 0.00 4.00
531 602 7.883217 AGATATGAATCATCCAAATTCTGCAC 58.117 34.615 0.00 0.00 34.80 4.57
592 683 5.895636 TGTGCTTGAGTGAGAAAAGAAAA 57.104 34.783 0.00 0.00 0.00 2.29
634 725 3.644966 TTTTTCCGACTATGGCAGGAT 57.355 42.857 0.00 0.00 32.19 3.24
635 726 3.644966 TTTTCCGACTATGGCAGGATT 57.355 42.857 0.00 0.00 32.19 3.01
641 732 0.833287 ACTATGGCAGGATTCGTGCT 59.167 50.000 25.44 13.07 43.57 4.40
748 840 3.437395 AGCGGTGTGAGATCTATCGATAC 59.563 47.826 0.00 0.00 0.00 2.24
749 841 3.188667 GCGGTGTGAGATCTATCGATACA 59.811 47.826 0.00 0.00 0.00 2.29
750 842 4.142578 GCGGTGTGAGATCTATCGATACAT 60.143 45.833 0.00 0.00 0.00 2.29
751 843 5.564768 CGGTGTGAGATCTATCGATACATC 58.435 45.833 11.52 11.52 0.00 3.06
790 882 1.584175 TGACTTTGCGCGGTTAAGAA 58.416 45.000 8.83 0.00 0.00 2.52
975 1163 1.548973 GACGAGCCGACACACAACAG 61.549 60.000 1.50 0.00 0.00 3.16
976 1164 1.299850 CGAGCCGACACACAACAGA 60.300 57.895 0.00 0.00 0.00 3.41
977 1165 1.278172 CGAGCCGACACACAACAGAG 61.278 60.000 0.00 0.00 0.00 3.35
978 1166 0.946221 GAGCCGACACACAACAGAGG 60.946 60.000 0.00 0.00 0.00 3.69
979 1167 1.961277 GCCGACACACAACAGAGGG 60.961 63.158 0.00 0.00 0.00 4.30
980 1168 1.301716 CCGACACACAACAGAGGGG 60.302 63.158 0.00 0.00 0.00 4.79
981 1169 1.301716 CGACACACAACAGAGGGGG 60.302 63.158 0.00 0.00 0.00 5.40
982 1170 1.600916 GACACACAACAGAGGGGGC 60.601 63.158 0.00 0.00 0.00 5.80
983 1171 2.337879 GACACACAACAGAGGGGGCA 62.338 60.000 0.00 0.00 0.00 5.36
984 1172 1.152777 CACACAACAGAGGGGGCAA 60.153 57.895 0.00 0.00 0.00 4.52
985 1173 1.151450 ACACAACAGAGGGGGCAAG 59.849 57.895 0.00 0.00 0.00 4.01
986 1174 1.604593 CACAACAGAGGGGGCAAGG 60.605 63.158 0.00 0.00 0.00 3.61
987 1175 1.774217 ACAACAGAGGGGGCAAGGA 60.774 57.895 0.00 0.00 0.00 3.36
988 1176 1.303643 CAACAGAGGGGGCAAGGAC 60.304 63.158 0.00 0.00 0.00 3.85
989 1177 1.774217 AACAGAGGGGGCAAGGACA 60.774 57.895 0.00 0.00 0.00 4.02
1003 1191 4.065088 GCAAGGACAAGTAGACAACATGA 58.935 43.478 0.00 0.00 31.22 3.07
1006 1194 5.552870 AGGACAAGTAGACAACATGAGTT 57.447 39.130 0.00 0.00 38.88 3.01
1137 1336 0.179034 GTGAGCTCCATCATCCACCC 60.179 60.000 12.15 0.00 0.00 4.61
1172 1377 2.787249 GCGCGTGCATGTCTTGAT 59.213 55.556 17.66 0.00 42.15 2.57
1181 1386 4.607955 GTGCATGTCTTGATGATTCATGG 58.392 43.478 3.32 0.00 37.11 3.66
1188 1393 4.335315 GTCTTGATGATTCATGGCCGTTTA 59.665 41.667 3.32 0.00 0.00 2.01
1207 1415 1.376543 AATGTCCTCATTGCAGAGCG 58.623 50.000 0.00 0.00 41.95 5.03
1358 1568 4.457496 CTGGTGCGCATCCTCGGT 62.457 66.667 19.88 0.00 0.00 4.69
1422 1632 2.819595 GCGGCCACGACATCATGT 60.820 61.111 2.24 0.00 44.60 3.21
1425 3785 1.018752 CGGCCACGACATCATGTTGA 61.019 55.000 12.37 0.00 44.60 3.18
1574 3934 3.494336 CAGAGCGCGCAGGGAAAG 61.494 66.667 35.10 11.48 46.37 2.62
1630 3991 2.670148 GCGACCCCTTCCTCCACAT 61.670 63.158 0.00 0.00 0.00 3.21
1635 3996 1.275002 ACCCCTTCCTCCACATGGTAT 60.275 52.381 0.00 0.00 36.34 2.73
1637 3998 3.260205 CCCCTTCCTCCACATGGTATAT 58.740 50.000 0.00 0.00 36.34 0.86
1639 4000 4.171234 CCCTTCCTCCACATGGTATATCT 58.829 47.826 0.00 0.00 36.34 1.98
1641 4002 4.223923 CCTTCCTCCACATGGTATATCTCC 59.776 50.000 0.00 0.00 36.34 3.71
1666 4027 7.328737 CCAATTTGCTTCTTTCTCTCTTTCATG 59.671 37.037 0.00 0.00 0.00 3.07
1667 4028 7.756395 ATTTGCTTCTTTCTCTCTTTCATGA 57.244 32.000 0.00 0.00 0.00 3.07
1669 4030 7.756395 TTGCTTCTTTCTCTCTTTCATGATT 57.244 32.000 0.00 0.00 0.00 2.57
1671 4032 7.814642 TGCTTCTTTCTCTCTTTCATGATTTC 58.185 34.615 0.00 0.00 0.00 2.17
1673 4034 8.513774 GCTTCTTTCTCTCTTTCATGATTTCTT 58.486 33.333 0.00 0.00 0.00 2.52
1700 4157 8.051901 ACTTAATAATAACCAAGCAGTCAACC 57.948 34.615 0.00 0.00 0.00 3.77
1706 4163 0.825010 CCAAGCAGTCAACCAGGCTT 60.825 55.000 0.00 0.00 46.71 4.35
1711 4168 4.301072 AGCAGTCAACCAGGCTTAATTA 57.699 40.909 0.00 0.00 31.34 1.40
1712 4169 4.662278 AGCAGTCAACCAGGCTTAATTAA 58.338 39.130 0.00 0.00 31.34 1.40
1713 4170 4.702131 AGCAGTCAACCAGGCTTAATTAAG 59.298 41.667 19.08 19.08 31.34 1.85
1734 4194 4.824289 AGCTTAAAGAATTGCCAACATGG 58.176 39.130 0.00 0.00 41.55 3.66
1774 4238 2.964174 CATGCATTGCCACCACGT 59.036 55.556 6.12 0.00 0.00 4.49
1778 4242 2.844451 GCATTGCCACCACGTGTGT 61.844 57.895 15.65 9.31 43.85 3.72
1788 4252 4.023878 GCCACCACGTGTGTTTTCTTAATA 60.024 41.667 15.65 0.00 43.85 0.98
1793 4257 7.165154 CACCACGTGTGTTTTCTTAATAAACTG 59.835 37.037 15.65 0.00 40.26 3.16
1796 4260 8.120465 CACGTGTGTTTTCTTAATAAACTGAGT 58.880 33.333 7.58 0.00 36.64 3.41
1820 4287 7.715249 AGTCTCTTGTTACAAAGTTGCAAGATA 59.285 33.333 0.00 4.52 42.76 1.98
1821 4288 7.798982 GTCTCTTGTTACAAAGTTGCAAGATAC 59.201 37.037 0.00 10.42 42.76 2.24
1822 4289 7.715249 TCTCTTGTTACAAAGTTGCAAGATACT 59.285 33.333 0.00 0.00 42.76 2.12
1824 4291 7.497579 TCTTGTTACAAAGTTGCAAGATACTCA 59.502 33.333 0.00 0.00 40.07 3.41
1826 4293 6.765989 TGTTACAAAGTTGCAAGATACTCACT 59.234 34.615 0.00 0.00 0.00 3.41
1827 4294 5.931441 ACAAAGTTGCAAGATACTCACTC 57.069 39.130 0.00 0.00 0.00 3.51
1828 4295 4.757149 ACAAAGTTGCAAGATACTCACTCC 59.243 41.667 0.00 0.00 0.00 3.85
1829 4296 3.238108 AGTTGCAAGATACTCACTCCG 57.762 47.619 0.00 0.00 0.00 4.63
1830 4297 2.563179 AGTTGCAAGATACTCACTCCGT 59.437 45.455 0.00 0.00 0.00 4.69
1831 4298 2.924290 GTTGCAAGATACTCACTCCGTC 59.076 50.000 0.00 0.00 0.00 4.79
1833 4300 1.751924 GCAAGATACTCACTCCGTCCT 59.248 52.381 0.00 0.00 0.00 3.85
1835 4302 3.380637 GCAAGATACTCACTCCGTCCTAA 59.619 47.826 0.00 0.00 0.00 2.69
1836 4303 4.142227 GCAAGATACTCACTCCGTCCTAAA 60.142 45.833 0.00 0.00 0.00 1.85
1838 4305 5.579564 AGATACTCACTCCGTCCTAAAAC 57.420 43.478 0.00 0.00 0.00 2.43
1840 4307 6.421485 AGATACTCACTCCGTCCTAAAACTA 58.579 40.000 0.00 0.00 0.00 2.24
1842 4309 4.405548 ACTCACTCCGTCCTAAAACTAGT 58.594 43.478 0.00 0.00 0.00 2.57
1844 4311 4.147321 TCACTCCGTCCTAAAACTAGTGT 58.853 43.478 0.00 0.00 34.74 3.55
1845 4312 4.217118 TCACTCCGTCCTAAAACTAGTGTC 59.783 45.833 0.00 0.00 34.74 3.67
1846 4313 4.217983 CACTCCGTCCTAAAACTAGTGTCT 59.782 45.833 0.00 0.00 31.43 3.41
1847 4314 4.458642 ACTCCGTCCTAAAACTAGTGTCTC 59.541 45.833 0.00 0.00 0.00 3.36
1848 4315 4.401022 TCCGTCCTAAAACTAGTGTCTCA 58.599 43.478 0.00 0.00 0.00 3.27
1849 4316 4.828939 TCCGTCCTAAAACTAGTGTCTCAA 59.171 41.667 0.00 0.00 0.00 3.02
1850 4317 5.479375 TCCGTCCTAAAACTAGTGTCTCAAT 59.521 40.000 0.00 0.00 0.00 2.57
1851 4318 6.014840 TCCGTCCTAAAACTAGTGTCTCAATT 60.015 38.462 0.00 0.00 0.00 2.32
1852 4319 6.649557 CCGTCCTAAAACTAGTGTCTCAATTT 59.350 38.462 0.00 0.00 0.00 1.82
1853 4320 7.172703 CCGTCCTAAAACTAGTGTCTCAATTTT 59.827 37.037 0.00 0.00 0.00 1.82
1855 4322 7.803659 GTCCTAAAACTAGTGTCTCAATTTTGC 59.196 37.037 0.00 0.00 0.00 3.68
1857 4324 8.299570 CCTAAAACTAGTGTCTCAATTTTGCAT 58.700 33.333 0.00 0.00 0.00 3.96
1861 4328 9.463443 AAACTAGTGTCTCAATTTTGCATTAAC 57.537 29.630 0.00 0.00 0.00 2.01
1862 4329 8.396272 ACTAGTGTCTCAATTTTGCATTAACT 57.604 30.769 0.00 0.00 0.00 2.24
1922 4389 9.947433 ATTTTGAAAAAGAGGAAATATGATGCA 57.053 25.926 0.00 0.00 0.00 3.96
1923 4390 9.775854 TTTTGAAAAAGAGGAAATATGATGCAA 57.224 25.926 0.00 0.00 0.00 4.08
1924 4391 9.947433 TTTGAAAAAGAGGAAATATGATGCAAT 57.053 25.926 0.00 0.00 0.00 3.56
1985 4704 1.066573 CATACCTGGAGATGATCGCCC 60.067 57.143 12.74 6.38 35.30 6.13
2122 4975 2.972625 GTCATCTGGACCATCGTCAAA 58.027 47.619 0.00 0.00 41.13 2.69
2134 4987 0.393820 TCGTCAAACGGGTAGGCTTT 59.606 50.000 0.00 0.00 42.81 3.51
2135 4988 1.202675 TCGTCAAACGGGTAGGCTTTT 60.203 47.619 0.00 0.00 42.81 2.27
2136 4989 1.069500 CGTCAAACGGGTAGGCTTTTG 60.069 52.381 0.00 0.00 38.08 2.44
2138 4991 3.140623 GTCAAACGGGTAGGCTTTTGTA 58.859 45.455 8.10 0.00 32.02 2.41
2139 4992 3.565063 GTCAAACGGGTAGGCTTTTGTAA 59.435 43.478 8.10 0.00 32.02 2.41
2141 4994 4.643784 TCAAACGGGTAGGCTTTTGTAAAA 59.356 37.500 8.10 0.00 32.02 1.52
2143 4996 5.794726 AACGGGTAGGCTTTTGTAAAATT 57.205 34.783 0.00 0.00 0.00 1.82
2144 4997 5.381174 ACGGGTAGGCTTTTGTAAAATTC 57.619 39.130 0.00 0.00 0.00 2.17
2145 4998 4.828387 ACGGGTAGGCTTTTGTAAAATTCA 59.172 37.500 0.00 0.00 0.00 2.57
2146 4999 5.048294 ACGGGTAGGCTTTTGTAAAATTCAG 60.048 40.000 0.00 0.00 0.00 3.02
2147 5000 5.048294 CGGGTAGGCTTTTGTAAAATTCAGT 60.048 40.000 0.00 0.00 0.00 3.41
2148 5001 6.516028 CGGGTAGGCTTTTGTAAAATTCAGTT 60.516 38.462 0.00 0.00 0.00 3.16
2149 5002 6.866770 GGGTAGGCTTTTGTAAAATTCAGTTC 59.133 38.462 0.00 0.00 0.00 3.01
2151 5004 7.381408 GGTAGGCTTTTGTAAAATTCAGTTCAC 59.619 37.037 0.00 0.00 0.00 3.18
2152 5005 5.977129 AGGCTTTTGTAAAATTCAGTTCACG 59.023 36.000 0.00 0.00 0.00 4.35
2155 5008 6.560251 GCTTTTGTAAAATTCAGTTCACGCAG 60.560 38.462 0.00 0.00 0.00 5.18
2160 5013 2.238942 ATTCAGTTCACGCAGTCACA 57.761 45.000 0.00 0.00 41.61 3.58
2161 5014 2.238942 TTCAGTTCACGCAGTCACAT 57.761 45.000 0.00 0.00 41.61 3.21
2162 5015 3.378911 TTCAGTTCACGCAGTCACATA 57.621 42.857 0.00 0.00 41.61 2.29
2164 5017 2.296190 TCAGTTCACGCAGTCACATACT 59.704 45.455 0.00 0.00 41.61 2.12
2167 5020 0.530744 TCACGCAGTCACATACTCCC 59.469 55.000 0.00 0.00 41.61 4.30
2168 5021 0.246360 CACGCAGTCACATACTCCCA 59.754 55.000 0.00 0.00 41.61 4.37
2169 5022 1.134699 CACGCAGTCACATACTCCCAT 60.135 52.381 0.00 0.00 41.61 4.00
2171 5024 1.539065 CGCAGTCACATACTCCCATCC 60.539 57.143 0.00 0.00 35.76 3.51
2172 5025 1.202698 GCAGTCACATACTCCCATCCC 60.203 57.143 0.00 0.00 35.76 3.85
2174 5027 1.120530 GTCACATACTCCCATCCCGT 58.879 55.000 0.00 0.00 0.00 5.28
2176 5029 2.897969 GTCACATACTCCCATCCCGTAT 59.102 50.000 0.00 0.00 0.00 3.06
2177 5030 3.323979 GTCACATACTCCCATCCCGTATT 59.676 47.826 0.00 0.00 0.00 1.89
2178 5031 3.971305 TCACATACTCCCATCCCGTATTT 59.029 43.478 0.00 0.00 0.00 1.40
2179 5032 5.011329 GTCACATACTCCCATCCCGTATTTA 59.989 44.000 0.00 0.00 0.00 1.40
2180 5033 5.245301 TCACATACTCCCATCCCGTATTTAG 59.755 44.000 0.00 0.00 0.00 1.85
2183 5036 3.649843 ACTCCCATCCCGTATTTAGACA 58.350 45.455 0.00 0.00 0.00 3.41
2185 5038 4.472108 ACTCCCATCCCGTATTTAGACAAA 59.528 41.667 0.00 0.00 0.00 2.83
2186 5039 5.132144 ACTCCCATCCCGTATTTAGACAAAT 59.868 40.000 0.00 0.00 38.02 2.32
2187 5040 5.617252 TCCCATCCCGTATTTAGACAAATC 58.383 41.667 0.00 0.00 35.88 2.17
2188 5041 5.368523 TCCCATCCCGTATTTAGACAAATCT 59.631 40.000 0.00 0.00 35.88 2.40
2189 5042 6.555738 TCCCATCCCGTATTTAGACAAATCTA 59.444 38.462 0.00 0.00 35.88 1.98
2191 5044 7.387948 CCCATCCCGTATTTAGACAAATCTAAG 59.612 40.741 0.00 0.00 45.93 2.18
2208 5061 9.722056 CAAATCTAAGATAAGAATTTTGGGACG 57.278 33.333 0.00 0.00 28.49 4.79
2209 5062 8.451908 AATCTAAGATAAGAATTTTGGGACGG 57.548 34.615 0.00 0.00 0.00 4.79
2211 5064 7.272978 TCTAAGATAAGAATTTTGGGACGGAG 58.727 38.462 0.00 0.00 0.00 4.63
2212 5065 4.781934 AGATAAGAATTTTGGGACGGAGG 58.218 43.478 0.00 0.00 0.00 4.30
2213 5066 2.215942 AAGAATTTTGGGACGGAGGG 57.784 50.000 0.00 0.00 0.00 4.30
2214 5067 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2215 5068 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2216 5069 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
2217 5070 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2222 5075 1.611474 GGGACGGAGGGAGTACAACC 61.611 65.000 0.00 0.00 0.00 3.77
2231 5177 0.872388 GGAGTACAACCAACTTGGCG 59.128 55.000 7.81 2.16 42.67 5.69
2242 5188 3.373565 CTTGGCGGTTGGAAGGGC 61.374 66.667 0.00 0.00 0.00 5.19
2243 5189 4.211330 TTGGCGGTTGGAAGGGCA 62.211 61.111 0.00 0.00 34.16 5.36
2245 5191 4.966787 GGCGGTTGGAAGGGCACA 62.967 66.667 0.00 0.00 0.00 4.57
2246 5192 2.676471 GCGGTTGGAAGGGCACAT 60.676 61.111 0.00 0.00 0.00 3.21
2249 5195 1.586154 CGGTTGGAAGGGCACATCAC 61.586 60.000 0.00 0.00 0.00 3.06
2250 5196 1.586154 GGTTGGAAGGGCACATCACG 61.586 60.000 0.00 0.00 0.00 4.35
2251 5197 1.971167 TTGGAAGGGCACATCACGC 60.971 57.895 0.00 0.00 0.00 5.34
2258 5204 2.870372 GCACATCACGCCAGTTCC 59.130 61.111 0.00 0.00 0.00 3.62
2259 5205 1.965930 GCACATCACGCCAGTTCCA 60.966 57.895 0.00 0.00 0.00 3.53
2260 5206 1.308069 GCACATCACGCCAGTTCCAT 61.308 55.000 0.00 0.00 0.00 3.41
2261 5207 1.167851 CACATCACGCCAGTTCCATT 58.832 50.000 0.00 0.00 0.00 3.16
2262 5208 1.131126 CACATCACGCCAGTTCCATTC 59.869 52.381 0.00 0.00 0.00 2.67
2263 5209 0.734889 CATCACGCCAGTTCCATTCC 59.265 55.000 0.00 0.00 0.00 3.01
2264 5210 0.744414 ATCACGCCAGTTCCATTCCG 60.744 55.000 0.00 0.00 0.00 4.30
2265 5211 1.671054 CACGCCAGTTCCATTCCGT 60.671 57.895 0.00 0.00 0.00 4.69
2266 5212 1.072505 ACGCCAGTTCCATTCCGTT 59.927 52.632 0.00 0.00 0.00 4.44
2267 5213 0.953960 ACGCCAGTTCCATTCCGTTC 60.954 55.000 0.00 0.00 0.00 3.95
2268 5214 0.953471 CGCCAGTTCCATTCCGTTCA 60.953 55.000 0.00 0.00 0.00 3.18
2269 5215 0.521735 GCCAGTTCCATTCCGTTCAC 59.478 55.000 0.00 0.00 0.00 3.18
2270 5216 1.890876 CCAGTTCCATTCCGTTCACA 58.109 50.000 0.00 0.00 0.00 3.58
2271 5217 2.436417 CCAGTTCCATTCCGTTCACAT 58.564 47.619 0.00 0.00 0.00 3.21
2272 5218 2.420022 CCAGTTCCATTCCGTTCACATC 59.580 50.000 0.00 0.00 0.00 3.06
2273 5219 3.073678 CAGTTCCATTCCGTTCACATCA 58.926 45.455 0.00 0.00 0.00 3.07
2274 5220 3.691118 CAGTTCCATTCCGTTCACATCAT 59.309 43.478 0.00 0.00 0.00 2.45
2275 5221 4.156556 CAGTTCCATTCCGTTCACATCATT 59.843 41.667 0.00 0.00 0.00 2.57
2276 5222 4.766891 AGTTCCATTCCGTTCACATCATTT 59.233 37.500 0.00 0.00 0.00 2.32
2277 5223 5.943416 AGTTCCATTCCGTTCACATCATTTA 59.057 36.000 0.00 0.00 0.00 1.40
2278 5224 6.603201 AGTTCCATTCCGTTCACATCATTTAT 59.397 34.615 0.00 0.00 0.00 1.40
2279 5225 7.773224 AGTTCCATTCCGTTCACATCATTTATA 59.227 33.333 0.00 0.00 0.00 0.98
2280 5226 8.567948 GTTCCATTCCGTTCACATCATTTATAT 58.432 33.333 0.00 0.00 0.00 0.86
2281 5227 9.785982 TTCCATTCCGTTCACATCATTTATATA 57.214 29.630 0.00 0.00 0.00 0.86
2282 5228 9.958180 TCCATTCCGTTCACATCATTTATATAT 57.042 29.630 0.00 0.00 0.00 0.86
2286 5232 8.786826 TCCGTTCACATCATTTATATATTCCC 57.213 34.615 0.00 0.00 0.00 3.97
2287 5233 8.602424 TCCGTTCACATCATTTATATATTCCCT 58.398 33.333 0.00 0.00 0.00 4.20
2288 5234 9.231297 CCGTTCACATCATTTATATATTCCCTT 57.769 33.333 0.00 0.00 0.00 3.95
2291 5237 8.492673 TCACATCATTTATATATTCCCTTCGC 57.507 34.615 0.00 0.00 0.00 4.70
2292 5238 7.552687 TCACATCATTTATATATTCCCTTCGCC 59.447 37.037 0.00 0.00 0.00 5.54
2293 5239 6.828785 ACATCATTTATATATTCCCTTCGCCC 59.171 38.462 0.00 0.00 0.00 6.13
2294 5240 5.424757 TCATTTATATATTCCCTTCGCCCG 58.575 41.667 0.00 0.00 0.00 6.13
2295 5241 3.899052 TTATATATTCCCTTCGCCCGG 57.101 47.619 0.00 0.00 0.00 5.73
2296 5242 1.946984 ATATATTCCCTTCGCCCGGA 58.053 50.000 0.73 0.00 0.00 5.14
2297 5243 1.719529 TATATTCCCTTCGCCCGGAA 58.280 50.000 0.73 0.00 42.24 4.30
2298 5244 3.331293 ATTCCCTTCGCCCGGAAT 58.669 55.556 0.73 4.46 42.78 3.01
2299 5245 0.841289 TATTCCCTTCGCCCGGAATT 59.159 50.000 0.73 0.00 44.75 2.17
2300 5246 0.841289 ATTCCCTTCGCCCGGAATTA 59.159 50.000 0.73 0.00 44.75 1.40
2301 5247 0.179468 TTCCCTTCGCCCGGAATTAG 59.821 55.000 0.73 0.00 33.14 1.73
2302 5248 0.979187 TCCCTTCGCCCGGAATTAGT 60.979 55.000 0.73 0.00 33.26 2.24
2303 5249 0.107361 CCCTTCGCCCGGAATTAGTT 60.107 55.000 0.73 0.00 33.26 2.24
2304 5250 1.014352 CCTTCGCCCGGAATTAGTTG 58.986 55.000 0.73 0.00 33.26 3.16
2305 5251 1.677820 CCTTCGCCCGGAATTAGTTGT 60.678 52.381 0.73 0.00 33.26 3.32
2306 5252 2.081462 CTTCGCCCGGAATTAGTTGTT 58.919 47.619 0.73 0.00 33.26 2.83
2307 5253 1.444836 TCGCCCGGAATTAGTTGTTG 58.555 50.000 0.73 0.00 0.00 3.33
2308 5254 0.179174 CGCCCGGAATTAGTTGTTGC 60.179 55.000 0.73 0.00 0.00 4.17
2309 5255 0.885196 GCCCGGAATTAGTTGTTGCA 59.115 50.000 0.73 0.00 0.00 4.08
2310 5256 1.135402 GCCCGGAATTAGTTGTTGCAG 60.135 52.381 0.73 0.00 0.00 4.41
2313 5259 3.334691 CCGGAATTAGTTGTTGCAGAGA 58.665 45.455 0.00 0.00 0.00 3.10
2315 5261 4.201851 CCGGAATTAGTTGTTGCAGAGATG 60.202 45.833 0.00 0.00 0.00 2.90
2319 5265 6.446781 AATTAGTTGTTGCAGAGATGGATG 57.553 37.500 0.00 0.00 0.00 3.51
2323 5269 5.121811 AGTTGTTGCAGAGATGGATGTATC 58.878 41.667 0.00 0.00 0.00 2.24
2326 5272 6.094193 TGTTGCAGAGATGGATGTATCTAG 57.906 41.667 0.00 0.00 37.53 2.43
2328 5274 5.973899 TGCAGAGATGGATGTATCTAGAC 57.026 43.478 0.00 0.00 37.53 2.59
2329 5275 4.457257 TGCAGAGATGGATGTATCTAGACG 59.543 45.833 0.00 0.00 37.53 4.18
2331 5277 5.644206 GCAGAGATGGATGTATCTAGACGTA 59.356 44.000 0.00 0.00 37.53 3.57
2332 5278 6.317642 GCAGAGATGGATGTATCTAGACGTAT 59.682 42.308 0.00 0.00 37.53 3.06
2351 5297 9.530633 AGACGTATTTTAGTTCTTGATACATCC 57.469 33.333 0.00 0.00 0.00 3.51
2353 5299 9.832445 ACGTATTTTAGTTCTTGATACATCCAT 57.168 29.630 0.00 0.00 0.00 3.41
2362 5308 8.717717 AGTTCTTGATACATCCATTTCTATCCA 58.282 33.333 0.00 0.00 0.00 3.41
2363 5309 9.512588 GTTCTTGATACATCCATTTCTATCCAT 57.487 33.333 0.00 0.00 0.00 3.41
2370 5316 7.149569 ACATCCATTTCTATCCATTTATGCG 57.850 36.000 0.00 0.00 0.00 4.73
2371 5317 6.942005 ACATCCATTTCTATCCATTTATGCGA 59.058 34.615 0.00 0.00 0.00 5.10
2372 5318 6.801539 TCCATTTCTATCCATTTATGCGAC 57.198 37.500 0.00 0.00 0.00 5.19
2373 5319 6.295249 TCCATTTCTATCCATTTATGCGACA 58.705 36.000 0.00 0.00 0.00 4.35
2374 5320 6.770303 TCCATTTCTATCCATTTATGCGACAA 59.230 34.615 0.00 0.00 0.00 3.18
2375 5321 7.041167 TCCATTTCTATCCATTTATGCGACAAG 60.041 37.037 0.00 0.00 0.00 3.16
2377 5323 8.773645 CATTTCTATCCATTTATGCGACAAGTA 58.226 33.333 0.00 0.00 0.00 2.24
2378 5324 8.725405 TTTCTATCCATTTATGCGACAAGTAA 57.275 30.769 0.00 0.00 0.00 2.24
2381 5327 6.604735 ATCCATTTATGCGACAAGTAACTC 57.395 37.500 0.00 0.00 0.00 3.01
2382 5328 4.565166 TCCATTTATGCGACAAGTAACTCG 59.435 41.667 0.00 0.00 0.00 4.18
2383 5329 4.260212 CCATTTATGCGACAAGTAACTCGG 60.260 45.833 0.00 0.00 0.00 4.63
2384 5330 3.853831 TTATGCGACAAGTAACTCGGA 57.146 42.857 0.00 0.00 34.58 4.55
2385 5331 2.279582 ATGCGACAAGTAACTCGGAG 57.720 50.000 2.83 2.83 33.51 4.63
2386 5332 0.956633 TGCGACAAGTAACTCGGAGT 59.043 50.000 4.45 4.45 0.00 3.85
2387 5333 1.335597 TGCGACAAGTAACTCGGAGTG 60.336 52.381 12.12 1.05 0.00 3.51
2388 5334 1.978542 CGACAAGTAACTCGGAGTGG 58.021 55.000 12.12 2.35 0.00 4.00
2389 5335 1.538512 CGACAAGTAACTCGGAGTGGA 59.461 52.381 12.12 0.00 0.00 4.02
2390 5336 2.414293 CGACAAGTAACTCGGAGTGGAG 60.414 54.545 12.12 3.41 39.97 3.86
2393 5339 0.702902 AGTAACTCGGAGTGGAGGGA 59.297 55.000 12.12 0.00 38.39 4.20
2394 5340 1.104630 GTAACTCGGAGTGGAGGGAG 58.895 60.000 12.12 0.00 38.39 4.30
2395 5341 0.702902 TAACTCGGAGTGGAGGGAGT 59.297 55.000 12.12 0.00 41.25 3.85
2400 5346 0.105039 CGGAGTGGAGGGAGTATTGC 59.895 60.000 0.00 0.00 0.00 3.56
2401 5347 0.105039 GGAGTGGAGGGAGTATTGCG 59.895 60.000 0.00 0.00 0.00 4.85
2402 5348 0.824759 GAGTGGAGGGAGTATTGCGT 59.175 55.000 0.00 0.00 0.00 5.24
2404 5350 2.429610 GAGTGGAGGGAGTATTGCGTTA 59.570 50.000 0.00 0.00 0.00 3.18
2406 5352 3.454812 AGTGGAGGGAGTATTGCGTTATT 59.545 43.478 0.00 0.00 0.00 1.40
2407 5353 4.652421 AGTGGAGGGAGTATTGCGTTATTA 59.348 41.667 0.00 0.00 0.00 0.98
2408 5354 5.307196 AGTGGAGGGAGTATTGCGTTATTAT 59.693 40.000 0.00 0.00 0.00 1.28
2413 5359 7.062749 AGGGAGTATTGCGTTATTATTCAGA 57.937 36.000 0.00 0.00 0.00 3.27
2414 5360 7.680730 AGGGAGTATTGCGTTATTATTCAGAT 58.319 34.615 0.00 0.00 0.00 2.90
2415 5361 8.157476 AGGGAGTATTGCGTTATTATTCAGATT 58.843 33.333 0.00 0.00 0.00 2.40
2416 5362 8.443937 GGGAGTATTGCGTTATTATTCAGATTC 58.556 37.037 0.00 0.00 0.00 2.52
2449 5395 8.574196 ACAACAATATTTTTCTTCACTTTCGG 57.426 30.769 0.00 0.00 0.00 4.30
2450 5396 7.169140 ACAACAATATTTTTCTTCACTTTCGGC 59.831 33.333 0.00 0.00 0.00 5.54
2451 5397 5.856455 ACAATATTTTTCTTCACTTTCGGCG 59.144 36.000 0.00 0.00 0.00 6.46
2452 5398 5.873179 ATATTTTTCTTCACTTTCGGCGA 57.127 34.783 4.99 4.99 0.00 5.54
2453 5399 4.766404 ATTTTTCTTCACTTTCGGCGAT 57.234 36.364 11.76 0.00 0.00 4.58
2454 5400 3.806316 TTTTCTTCACTTTCGGCGATC 57.194 42.857 11.76 0.00 0.00 3.69
2455 5401 2.448926 TTCTTCACTTTCGGCGATCA 57.551 45.000 11.76 0.00 0.00 2.92
2456 5402 1.996292 TCTTCACTTTCGGCGATCAG 58.004 50.000 11.76 12.81 0.00 2.90
2457 5403 1.544246 TCTTCACTTTCGGCGATCAGA 59.456 47.619 19.98 9.95 0.00 3.27
2458 5404 2.029380 TCTTCACTTTCGGCGATCAGAA 60.029 45.455 19.98 15.66 0.00 3.02
2459 5405 2.448926 TCACTTTCGGCGATCAGAAA 57.551 45.000 19.98 7.14 35.39 2.52
2463 5409 2.743636 TTTCGGCGATCAGAAAGAGT 57.256 45.000 11.76 0.00 33.12 3.24
2464 5410 2.279582 TTCGGCGATCAGAAAGAGTC 57.720 50.000 11.76 0.00 0.00 3.36
2465 5411 1.464734 TCGGCGATCAGAAAGAGTCT 58.535 50.000 4.99 0.00 36.88 3.24
2479 5425 7.340122 AGAAAGAGTCTGATTACATCATCGA 57.660 36.000 0.00 0.00 38.85 3.59
2480 5426 7.776107 AGAAAGAGTCTGATTACATCATCGAA 58.224 34.615 0.00 0.00 38.85 3.71
2484 5430 5.043903 AGTCTGATTACATCATCGAAACGG 58.956 41.667 0.00 0.00 38.85 4.44
2485 5431 4.804139 GTCTGATTACATCATCGAAACGGT 59.196 41.667 0.00 0.00 38.85 4.83
2490 5436 2.540515 ACATCATCGAAACGGTAGCTG 58.459 47.619 0.00 0.00 0.00 4.24
2506 5452 1.167851 GCTGGATGCTTGCACAAGTA 58.832 50.000 11.77 7.89 40.45 2.24
2529 5545 8.564574 AGTACTTTACATTACATGTTTGGTGTG 58.435 33.333 2.30 0.00 41.63 3.82
2532 5548 8.904834 ACTTTACATTACATGTTTGGTGTGTTA 58.095 29.630 2.30 0.00 41.63 2.41
2565 5611 2.158871 TCTGGTTTTGCAGGTTCGTACT 60.159 45.455 0.00 0.00 0.00 2.73
2648 5706 5.045651 TCTCCTCCAATGCAGTTTCATTCTA 60.046 40.000 0.00 0.00 34.68 2.10
2661 5719 5.404667 AGTTTCATTCTACCGTTTCTCGAAC 59.595 40.000 0.00 0.00 42.86 3.95
2684 5770 4.324099 CCCTTGTCATGAACCATTCTCTCT 60.324 45.833 0.00 0.00 0.00 3.10
2693 5779 1.701847 ACCATTCTCTCTTGGTGCACT 59.298 47.619 17.98 0.00 44.49 4.40
2702 5788 2.805099 CTCTTGGTGCACTTCAACTCTC 59.195 50.000 17.98 0.00 32.28 3.20
2715 5830 7.065894 CACTTCAACTCTCGTGTCTTTAATTG 58.934 38.462 0.00 0.00 0.00 2.32
2753 5872 3.127030 GGCTAAAACATCCCAAAGAGACG 59.873 47.826 0.00 0.00 0.00 4.18
2757 5876 2.751166 ACATCCCAAAGAGACGTGAG 57.249 50.000 0.00 0.00 0.00 3.51
2801 5920 8.760103 TGATGTCAACCATGAATTAACATTTG 57.240 30.769 0.00 0.00 37.30 2.32
2804 5923 8.815141 TGTCAACCATGAATTAACATTTGAAG 57.185 30.769 0.00 0.00 37.30 3.02
2880 6049 2.312722 ACAGCAGAGACATCAGCATC 57.687 50.000 0.00 0.00 40.24 3.91
2901 6070 1.227674 CCGGCCTATCCAGCAGAAC 60.228 63.158 0.00 0.00 34.01 3.01
2974 6163 5.537188 CCTGAGAGATTAGGTTGCATACTC 58.463 45.833 0.00 0.00 0.00 2.59
3021 6210 2.618241 TCCGTCCATTTTGATGCTATGC 59.382 45.455 0.00 0.00 0.00 3.14
3100 6293 5.035784 TCGATGTTGCGATCTAGATAGTG 57.964 43.478 13.55 5.00 35.01 2.74
3140 6349 7.375834 TGTTGGGTGCTCGATAATACTTATAG 58.624 38.462 0.00 0.00 0.00 1.31
3187 6396 0.854218 TGGGGTCAACCAGGCTTAAA 59.146 50.000 0.89 0.00 42.91 1.52
3211 6420 4.935352 AGCTTAACAAAAGCCAACATGA 57.065 36.364 0.00 0.00 44.01 3.07
3215 6424 5.466393 GCTTAACAAAAGCCAACATGACAAT 59.534 36.000 0.00 0.00 37.30 2.71
3253 6462 2.172505 TCTGGAGAACTGGTTTTGCAGA 59.827 45.455 18.72 18.72 45.12 4.26
3262 6471 3.074412 CTGGTTTTGCAGATTCGTACCT 58.926 45.455 0.00 0.00 0.00 3.08
3322 6532 8.576442 CCGTCCAGGCATAAGAATTATTATTTT 58.424 33.333 2.55 0.00 39.78 1.82
3361 6571 6.263168 TCATTCTTCTGTTTCTCAAACCCTTC 59.737 38.462 0.00 0.00 40.67 3.46
3364 6574 4.086706 TCTGTTTCTCAAACCCTTCTCC 57.913 45.455 0.00 0.00 40.67 3.71
3397 6607 2.233186 CTCCTGATGCAGTCAACTCTCA 59.767 50.000 0.00 0.00 36.14 3.27
3414 6624 5.574188 ACTCTCATGTCTTTGGGCTTATTT 58.426 37.500 0.00 0.00 0.00 1.40
3457 6667 4.462834 GGCTTAGAATTTGGCCACTACTTT 59.537 41.667 3.88 0.00 43.59 2.66
3467 6677 2.159037 GGCCACTACTTTACTTTCGTGC 59.841 50.000 0.00 0.00 0.00 5.34
3593 6803 1.072331 GTGTCCTCTCCCAAGAAGCAA 59.928 52.381 0.00 0.00 0.00 3.91
3667 6877 5.199982 TCTCCTCTCCATCCCATACTATC 57.800 47.826 0.00 0.00 0.00 2.08
3700 6912 4.371417 CCCACCAGCAGCACCCAT 62.371 66.667 0.00 0.00 0.00 4.00
3701 6913 3.066190 CCACCAGCAGCACCCATG 61.066 66.667 0.00 0.00 0.00 3.66
3748 6960 1.751927 GATGCAAGCCACAGAGGGG 60.752 63.158 0.00 0.00 38.09 4.79
3807 7021 1.525619 GAGTAGTGTTGGTTGTGCGAC 59.474 52.381 0.00 0.00 0.00 5.19
3835 7049 1.152440 AGGTAGCTATGCGGGCTCT 60.152 57.895 0.00 0.00 40.74 4.09
3837 7051 1.666234 GTAGCTATGCGGGCTCTGC 60.666 63.158 0.00 0.00 40.74 4.26
3838 7052 1.834378 TAGCTATGCGGGCTCTGCT 60.834 57.895 7.40 9.03 40.74 4.24
3839 7053 2.092319 TAGCTATGCGGGCTCTGCTG 62.092 60.000 12.39 0.00 40.74 4.41
3840 7054 2.280660 CTATGCGGGCTCTGCTGG 60.281 66.667 7.40 0.00 0.00 4.85
3841 7055 3.083349 TATGCGGGCTCTGCTGGT 61.083 61.111 7.40 0.00 0.00 4.00
3875 7100 1.203075 AGTGGAAGAGGAACGAGGACT 60.203 52.381 0.00 0.00 0.00 3.85
3890 7115 0.953960 GGACTTGGTTGTAGCGGTGG 60.954 60.000 0.00 0.00 0.00 4.61
3891 7116 1.574702 GACTTGGTTGTAGCGGTGGC 61.575 60.000 0.00 0.00 40.37 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 145 7.624360 ACTGAAATGTCAACTTGTGAAACTA 57.376 32.000 0.00 0.00 38.23 2.24
167 178 8.924511 TCAAGTGAGGTTCTAGAAATGAAAAT 57.075 30.769 6.78 0.00 0.00 1.82
178 189 6.486657 CCAGTGAAAAATCAAGTGAGGTTCTA 59.513 38.462 0.00 0.00 0.00 2.10
188 200 5.811613 TGAAACAAGCCAGTGAAAAATCAAG 59.188 36.000 0.00 0.00 0.00 3.02
191 203 5.641777 GTGAAACAAGCCAGTGAAAAATC 57.358 39.130 0.00 0.00 36.32 2.17
219 234 2.716988 GCAACTGAAACAGATGCGC 58.283 52.632 15.58 0.00 46.65 6.09
281 297 9.749490 GTGAAACTGATTATTTGAAAATGCATG 57.251 29.630 0.00 0.00 0.00 4.06
283 299 8.883954 TGTGAAACTGATTATTTGAAAATGCA 57.116 26.923 0.00 0.00 38.04 3.96
314 330 6.885735 ACCGCAAATATCAAACTTAAATGC 57.114 33.333 0.00 0.00 0.00 3.56
366 433 9.247126 CACAATTCATCAGTGAAACAAACATTA 57.753 29.630 0.00 0.00 46.67 1.90
381 448 8.905660 AATTTTGGACATTTCACAATTCATCA 57.094 26.923 0.00 0.00 0.00 3.07
400 467 9.726034 GATACATTTGAAACACGCTTAATTTTG 57.274 29.630 0.00 0.00 0.00 2.44
443 512 4.833390 ACTACTGGCATCAAGACCTTTAC 58.167 43.478 0.00 0.00 0.00 2.01
592 683 5.710513 AAGACACATGCATGTTACACATT 57.289 34.783 29.48 14.89 36.53 2.71
629 720 2.743664 TCAAATCACAGCACGAATCCTG 59.256 45.455 0.00 0.00 35.26 3.86
634 725 3.625313 TCAAAGTCAAATCACAGCACGAA 59.375 39.130 0.00 0.00 0.00 3.85
635 726 3.202097 TCAAAGTCAAATCACAGCACGA 58.798 40.909 0.00 0.00 0.00 4.35
748 840 5.422666 TTTTAAGCGGTGATGCTATGATG 57.577 39.130 0.00 0.00 46.60 3.07
749 841 5.764686 TCATTTTAAGCGGTGATGCTATGAT 59.235 36.000 0.00 0.00 46.60 2.45
750 842 5.007626 GTCATTTTAAGCGGTGATGCTATGA 59.992 40.000 0.00 0.00 46.60 2.15
751 843 5.008019 AGTCATTTTAAGCGGTGATGCTATG 59.992 40.000 0.00 0.00 46.60 2.23
975 1163 0.253327 CTACTTGTCCTTGCCCCCTC 59.747 60.000 0.00 0.00 0.00 4.30
976 1164 0.178873 TCTACTTGTCCTTGCCCCCT 60.179 55.000 0.00 0.00 0.00 4.79
977 1165 0.035343 GTCTACTTGTCCTTGCCCCC 60.035 60.000 0.00 0.00 0.00 5.40
978 1166 0.690762 TGTCTACTTGTCCTTGCCCC 59.309 55.000 0.00 0.00 0.00 5.80
979 1167 2.152016 GTTGTCTACTTGTCCTTGCCC 58.848 52.381 0.00 0.00 0.00 5.36
980 1168 2.846193 TGTTGTCTACTTGTCCTTGCC 58.154 47.619 0.00 0.00 0.00 4.52
981 1169 4.065088 TCATGTTGTCTACTTGTCCTTGC 58.935 43.478 0.00 0.00 34.44 4.01
982 1170 5.300752 ACTCATGTTGTCTACTTGTCCTTG 58.699 41.667 0.00 0.00 34.44 3.61
983 1171 5.552870 ACTCATGTTGTCTACTTGTCCTT 57.447 39.130 0.00 0.00 34.44 3.36
984 1172 5.070446 TGAACTCATGTTGTCTACTTGTCCT 59.930 40.000 0.00 0.00 36.39 3.85
985 1173 5.177696 GTGAACTCATGTTGTCTACTTGTCC 59.822 44.000 0.00 0.00 36.39 4.02
986 1174 5.107837 CGTGAACTCATGTTGTCTACTTGTC 60.108 44.000 0.00 0.00 36.39 3.18
987 1175 4.745125 CGTGAACTCATGTTGTCTACTTGT 59.255 41.667 0.00 0.00 36.39 3.16
988 1176 4.745125 ACGTGAACTCATGTTGTCTACTTG 59.255 41.667 0.00 0.00 43.01 3.16
989 1177 4.945246 ACGTGAACTCATGTTGTCTACTT 58.055 39.130 0.00 0.00 43.01 2.24
1003 1191 3.692406 GAGGCCCCGACGTGAACT 61.692 66.667 0.00 0.00 0.00 3.01
1043 1231 2.762043 AGAAGAGGAGGAGCGCCC 60.762 66.667 2.29 5.07 33.31 6.13
1050 1247 2.131067 GGAGGCGGAGAAGAGGAGG 61.131 68.421 0.00 0.00 0.00 4.30
1100 1297 3.075005 TACCGGTCTCCTGCTGGC 61.075 66.667 12.40 0.00 35.84 4.85
1172 1377 3.380004 GGACATTAAACGGCCATGAATCA 59.620 43.478 2.24 0.00 0.00 2.57
1181 1386 2.163412 TGCAATGAGGACATTAAACGGC 59.837 45.455 0.00 0.00 43.76 5.68
1188 1393 1.376543 CGCTCTGCAATGAGGACATT 58.623 50.000 5.23 0.00 46.10 2.71
1207 1415 0.101579 GTAGCTGAACTCCTCCTCGC 59.898 60.000 0.00 0.00 0.00 5.03
1350 1558 0.544357 TGGTTGAGGTGACCGAGGAT 60.544 55.000 0.00 0.00 40.13 3.24
1358 1568 1.254026 CGTAGGAGTGGTTGAGGTGA 58.746 55.000 0.00 0.00 0.00 4.02
1422 1632 2.939261 GGTCGCCCTCGAACCTCAA 61.939 63.158 0.00 0.00 46.17 3.02
1440 3800 4.530857 GATGGACACGCTCCCGGG 62.531 72.222 16.85 16.85 45.29 5.73
1630 3991 8.055181 AGAAAGAAGCAAATTGGAGATATACCA 58.945 33.333 0.00 0.00 35.47 3.25
1635 3996 7.628234 AGAGAGAAAGAAGCAAATTGGAGATA 58.372 34.615 0.00 0.00 0.00 1.98
1637 3998 5.874093 AGAGAGAAAGAAGCAAATTGGAGA 58.126 37.500 0.00 0.00 0.00 3.71
1639 4000 6.547141 TGAAAGAGAGAAAGAAGCAAATTGGA 59.453 34.615 0.00 0.00 0.00 3.53
1641 4002 8.080417 TCATGAAAGAGAGAAAGAAGCAAATTG 58.920 33.333 0.00 0.00 0.00 2.32
1675 4036 7.668052 TGGTTGACTGCTTGGTTATTATTAAGT 59.332 33.333 0.00 0.00 0.00 2.24
1677 4038 7.122055 CCTGGTTGACTGCTTGGTTATTATTAA 59.878 37.037 0.00 0.00 0.00 1.40
1678 4039 6.601613 CCTGGTTGACTGCTTGGTTATTATTA 59.398 38.462 0.00 0.00 0.00 0.98
1679 4040 5.418840 CCTGGTTGACTGCTTGGTTATTATT 59.581 40.000 0.00 0.00 0.00 1.40
1680 4041 4.949856 CCTGGTTGACTGCTTGGTTATTAT 59.050 41.667 0.00 0.00 0.00 1.28
1681 4042 4.331968 CCTGGTTGACTGCTTGGTTATTA 58.668 43.478 0.00 0.00 0.00 0.98
1682 4043 3.157087 CCTGGTTGACTGCTTGGTTATT 58.843 45.455 0.00 0.00 0.00 1.40
1683 4044 2.795329 CCTGGTTGACTGCTTGGTTAT 58.205 47.619 0.00 0.00 0.00 1.89
1684 4045 1.817740 GCCTGGTTGACTGCTTGGTTA 60.818 52.381 0.00 0.00 0.00 2.85
1687 4048 0.825010 AAGCCTGGTTGACTGCTTGG 60.825 55.000 0.00 0.00 42.13 3.61
1691 4052 4.986622 CTTAATTAAGCCTGGTTGACTGC 58.013 43.478 12.15 0.00 0.00 4.40
1711 4168 5.240121 CCATGTTGGCAATTCTTTAAGCTT 58.760 37.500 1.92 3.48 0.00 3.74
1712 4169 4.824289 CCATGTTGGCAATTCTTTAAGCT 58.176 39.130 1.92 0.00 0.00 3.74
1757 4217 1.444724 CACGTGGTGGCAATGCATG 60.445 57.895 7.95 0.00 0.00 4.06
1758 4218 1.902918 ACACGTGGTGGCAATGCAT 60.903 52.632 21.57 0.00 37.94 3.96
1759 4219 2.518112 ACACGTGGTGGCAATGCA 60.518 55.556 21.57 0.00 37.94 3.96
1768 4228 7.066043 TCAGTTTATTAAGAAAACACACGTGGT 59.934 33.333 21.57 12.08 38.92 4.16
1772 4236 8.548721 AGACTCAGTTTATTAAGAAAACACACG 58.451 33.333 14.99 0.00 38.92 4.49
1774 4238 9.832445 AGAGACTCAGTTTATTAAGAAAACACA 57.168 29.630 14.99 4.17 38.92 3.72
1788 4252 7.626452 GCAACTTTGTAACAAGAGACTCAGTTT 60.626 37.037 15.61 3.86 0.00 2.66
1793 4257 5.734855 TGCAACTTTGTAACAAGAGACTC 57.265 39.130 0.00 0.00 0.00 3.36
1796 4260 6.942532 ATCTTGCAACTTTGTAACAAGAGA 57.057 33.333 15.45 0.00 46.95 3.10
1806 4273 4.143030 CGGAGTGAGTATCTTGCAACTTTG 60.143 45.833 0.00 0.00 34.92 2.77
1826 4293 4.401022 TGAGACACTAGTTTTAGGACGGA 58.599 43.478 0.00 0.00 0.00 4.69
1827 4294 4.778534 TGAGACACTAGTTTTAGGACGG 57.221 45.455 0.00 0.00 0.00 4.79
1828 4295 7.653767 AAATTGAGACACTAGTTTTAGGACG 57.346 36.000 0.00 0.00 0.00 4.79
1829 4296 7.803659 GCAAAATTGAGACACTAGTTTTAGGAC 59.196 37.037 0.00 0.00 0.00 3.85
1830 4297 7.500892 TGCAAAATTGAGACACTAGTTTTAGGA 59.499 33.333 0.00 0.00 0.00 2.94
1831 4298 7.648142 TGCAAAATTGAGACACTAGTTTTAGG 58.352 34.615 0.00 0.00 0.00 2.69
1835 4302 9.463443 GTTAATGCAAAATTGAGACACTAGTTT 57.537 29.630 0.00 0.00 0.00 2.66
1836 4303 8.850156 AGTTAATGCAAAATTGAGACACTAGTT 58.150 29.630 0.00 0.00 0.00 2.24
1838 4305 9.683069 AAAGTTAATGCAAAATTGAGACACTAG 57.317 29.630 0.00 0.00 0.00 2.57
1896 4363 9.947433 TGCATCATATTTCCTCTTTTTCAAAAT 57.053 25.926 0.00 0.00 0.00 1.82
1897 4364 9.775854 TTGCATCATATTTCCTCTTTTTCAAAA 57.224 25.926 0.00 0.00 0.00 2.44
1898 4365 9.947433 ATTGCATCATATTTCCTCTTTTTCAAA 57.053 25.926 0.00 0.00 0.00 2.69
1924 4391 9.843704 TCCAGGAGGATTAGATCTTGAATTATA 57.156 33.333 0.00 0.00 39.61 0.98
1925 4392 8.748179 TCCAGGAGGATTAGATCTTGAATTAT 57.252 34.615 0.00 0.00 39.61 1.28
1949 4416 2.614987 GGTATGGCTCCAGCTGATCATC 60.615 54.545 17.39 1.15 41.70 2.92
1985 4704 2.733669 CCTCCCTCTGCCTCTGCTG 61.734 68.421 0.00 0.00 38.71 4.41
1994 4713 0.980231 CCCACCTTCTCCTCCCTCTG 60.980 65.000 0.00 0.00 0.00 3.35
2122 4975 4.828387 TGAATTTTACAAAAGCCTACCCGT 59.172 37.500 0.00 0.00 0.00 5.28
2134 4987 5.065346 TGACTGCGTGAACTGAATTTTACAA 59.935 36.000 0.00 0.00 0.00 2.41
2135 4988 4.572795 TGACTGCGTGAACTGAATTTTACA 59.427 37.500 0.00 0.00 0.00 2.41
2136 4989 4.904154 GTGACTGCGTGAACTGAATTTTAC 59.096 41.667 0.00 0.00 0.00 2.01
2138 4991 3.376859 TGTGACTGCGTGAACTGAATTTT 59.623 39.130 0.00 0.00 0.00 1.82
2139 4992 2.942376 TGTGACTGCGTGAACTGAATTT 59.058 40.909 0.00 0.00 0.00 1.82
2141 4994 2.238942 TGTGACTGCGTGAACTGAAT 57.761 45.000 0.00 0.00 0.00 2.57
2143 4996 2.296190 AGTATGTGACTGCGTGAACTGA 59.704 45.455 0.00 0.00 36.87 3.41
2144 4997 2.663602 GAGTATGTGACTGCGTGAACTG 59.336 50.000 0.00 0.00 39.06 3.16
2145 4998 2.352814 GGAGTATGTGACTGCGTGAACT 60.353 50.000 0.00 0.00 39.06 3.01
2146 4999 1.993370 GGAGTATGTGACTGCGTGAAC 59.007 52.381 0.00 0.00 39.06 3.18
2147 5000 2.363788 GGAGTATGTGACTGCGTGAA 57.636 50.000 0.00 0.00 39.06 3.18
2152 5005 1.202698 GGGATGGGAGTATGTGACTGC 60.203 57.143 0.00 0.00 45.47 4.40
2155 5008 1.120530 ACGGGATGGGAGTATGTGAC 58.879 55.000 0.00 0.00 0.00 3.67
2160 5013 5.399991 TGTCTAAATACGGGATGGGAGTAT 58.600 41.667 0.00 0.00 33.00 2.12
2161 5014 4.806892 TGTCTAAATACGGGATGGGAGTA 58.193 43.478 0.00 0.00 0.00 2.59
2162 5015 3.649843 TGTCTAAATACGGGATGGGAGT 58.350 45.455 0.00 0.00 0.00 3.85
2164 5017 5.368523 AGATTTGTCTAAATACGGGATGGGA 59.631 40.000 0.00 0.00 36.66 4.37
2167 5020 9.712305 ATCTTAGATTTGTCTAAATACGGGATG 57.288 33.333 0.00 0.00 36.66 3.51
2183 5036 8.903820 CCGTCCCAAAATTCTTATCTTAGATTT 58.096 33.333 0.00 0.00 0.00 2.17
2185 5038 7.802117 TCCGTCCCAAAATTCTTATCTTAGAT 58.198 34.615 0.00 0.00 0.00 1.98
2186 5039 7.190335 TCCGTCCCAAAATTCTTATCTTAGA 57.810 36.000 0.00 0.00 0.00 2.10
2187 5040 6.483640 CCTCCGTCCCAAAATTCTTATCTTAG 59.516 42.308 0.00 0.00 0.00 2.18
2188 5041 6.354130 CCTCCGTCCCAAAATTCTTATCTTA 58.646 40.000 0.00 0.00 0.00 2.10
2189 5042 5.193679 CCTCCGTCCCAAAATTCTTATCTT 58.806 41.667 0.00 0.00 0.00 2.40
2191 5044 3.883489 CCCTCCGTCCCAAAATTCTTATC 59.117 47.826 0.00 0.00 0.00 1.75
2196 5049 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2197 5050 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2199 5052 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2200 5053 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2201 5054 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
2202 5055 0.901580 GTTGTACTCCCTCCGTCCCA 60.902 60.000 0.00 0.00 0.00 4.37
2203 5056 1.611474 GGTTGTACTCCCTCCGTCCC 61.611 65.000 0.00 0.00 0.00 4.46
2204 5057 0.901580 TGGTTGTACTCCCTCCGTCC 60.902 60.000 0.00 0.00 0.00 4.79
2205 5058 0.971386 TTGGTTGTACTCCCTCCGTC 59.029 55.000 0.00 0.00 0.00 4.79
2207 5060 0.974383 AGTTGGTTGTACTCCCTCCG 59.026 55.000 0.00 0.00 0.00 4.63
2208 5061 2.552373 CCAAGTTGGTTGTACTCCCTCC 60.552 54.545 14.21 0.00 33.87 4.30
2209 5062 2.779506 CCAAGTTGGTTGTACTCCCTC 58.220 52.381 14.21 0.00 33.87 4.30
2211 5064 1.244816 GCCAAGTTGGTTGTACTCCC 58.755 55.000 22.85 0.00 40.46 4.30
2212 5065 0.872388 CGCCAAGTTGGTTGTACTCC 59.128 55.000 22.85 2.97 40.46 3.85
2213 5066 0.872388 CCGCCAAGTTGGTTGTACTC 59.128 55.000 22.85 3.70 40.46 2.59
2214 5067 0.181824 ACCGCCAAGTTGGTTGTACT 59.818 50.000 22.85 0.00 40.46 2.73
2215 5068 1.026584 AACCGCCAAGTTGGTTGTAC 58.973 50.000 22.85 5.14 46.41 2.90
2216 5069 3.498502 AACCGCCAAGTTGGTTGTA 57.501 47.368 22.85 0.00 46.41 2.41
2217 5070 4.347865 AACCGCCAAGTTGGTTGT 57.652 50.000 22.85 16.56 46.41 3.32
2222 5075 1.659794 CCTTCCAACCGCCAAGTTG 59.340 57.895 0.00 0.00 45.46 3.16
2231 5177 1.586154 CGTGATGTGCCCTTCCAACC 61.586 60.000 0.00 0.00 0.00 3.77
2242 5188 1.131126 GAATGGAACTGGCGTGATGTG 59.869 52.381 0.00 0.00 0.00 3.21
2243 5189 1.453155 GAATGGAACTGGCGTGATGT 58.547 50.000 0.00 0.00 0.00 3.06
2245 5191 0.744414 CGGAATGGAACTGGCGTGAT 60.744 55.000 0.00 0.00 0.00 3.06
2246 5192 1.375396 CGGAATGGAACTGGCGTGA 60.375 57.895 0.00 0.00 0.00 4.35
2249 5195 0.953471 TGAACGGAATGGAACTGGCG 60.953 55.000 0.00 0.00 0.00 5.69
2250 5196 0.521735 GTGAACGGAATGGAACTGGC 59.478 55.000 0.00 0.00 0.00 4.85
2251 5197 1.890876 TGTGAACGGAATGGAACTGG 58.109 50.000 0.00 0.00 0.00 4.00
2252 5198 3.073678 TGATGTGAACGGAATGGAACTG 58.926 45.455 0.00 0.00 0.00 3.16
2253 5199 3.417069 TGATGTGAACGGAATGGAACT 57.583 42.857 0.00 0.00 0.00 3.01
2254 5200 4.701956 AATGATGTGAACGGAATGGAAC 57.298 40.909 0.00 0.00 0.00 3.62
2255 5201 8.690203 ATATAAATGATGTGAACGGAATGGAA 57.310 30.769 0.00 0.00 0.00 3.53
2256 5202 9.958180 ATATATAAATGATGTGAACGGAATGGA 57.042 29.630 0.00 0.00 0.00 3.41
2260 5206 9.226606 GGGAATATATAAATGATGTGAACGGAA 57.773 33.333 0.00 0.00 0.00 4.30
2261 5207 8.602424 AGGGAATATATAAATGATGTGAACGGA 58.398 33.333 0.00 0.00 0.00 4.69
2262 5208 8.792830 AGGGAATATATAAATGATGTGAACGG 57.207 34.615 0.00 0.00 0.00 4.44
2265 5211 8.946085 GCGAAGGGAATATATAAATGATGTGAA 58.054 33.333 0.00 0.00 0.00 3.18
2266 5212 7.552687 GGCGAAGGGAATATATAAATGATGTGA 59.447 37.037 0.00 0.00 0.00 3.58
2267 5213 7.201732 GGGCGAAGGGAATATATAAATGATGTG 60.202 40.741 0.00 0.00 0.00 3.21
2268 5214 6.828785 GGGCGAAGGGAATATATAAATGATGT 59.171 38.462 0.00 0.00 0.00 3.06
2269 5215 6.017934 CGGGCGAAGGGAATATATAAATGATG 60.018 42.308 0.00 0.00 0.00 3.07
2270 5216 6.055588 CGGGCGAAGGGAATATATAAATGAT 58.944 40.000 0.00 0.00 0.00 2.45
2271 5217 5.424757 CGGGCGAAGGGAATATATAAATGA 58.575 41.667 0.00 0.00 0.00 2.57
2272 5218 4.574828 CCGGGCGAAGGGAATATATAAATG 59.425 45.833 0.00 0.00 0.00 2.32
2273 5219 4.472108 TCCGGGCGAAGGGAATATATAAAT 59.528 41.667 0.00 0.00 0.00 1.40
2274 5220 3.839490 TCCGGGCGAAGGGAATATATAAA 59.161 43.478 0.00 0.00 0.00 1.40
2275 5221 3.443052 TCCGGGCGAAGGGAATATATAA 58.557 45.455 0.00 0.00 0.00 0.98
2276 5222 3.104519 TCCGGGCGAAGGGAATATATA 57.895 47.619 0.00 0.00 0.00 0.86
2277 5223 1.946984 TCCGGGCGAAGGGAATATAT 58.053 50.000 0.00 0.00 0.00 0.86
2278 5224 1.719529 TTCCGGGCGAAGGGAATATA 58.280 50.000 0.00 0.00 37.40 0.86
2279 5225 2.535224 TTCCGGGCGAAGGGAATAT 58.465 52.632 0.00 0.00 37.40 1.28
2280 5226 4.053554 TTCCGGGCGAAGGGAATA 57.946 55.556 0.00 0.00 37.40 1.75
2281 5227 3.331293 ATTCCGGGCGAAGGGAAT 58.669 55.556 0.00 8.07 45.46 3.01
2282 5228 0.179468 CTAATTCCGGGCGAAGGGAA 59.821 55.000 0.00 4.33 45.72 3.97
2283 5229 0.979187 ACTAATTCCGGGCGAAGGGA 60.979 55.000 0.00 0.00 32.78 4.20
2284 5230 0.107361 AACTAATTCCGGGCGAAGGG 60.107 55.000 0.00 0.00 32.78 3.95
2285 5231 1.014352 CAACTAATTCCGGGCGAAGG 58.986 55.000 0.00 0.00 32.78 3.46
2286 5232 1.734163 ACAACTAATTCCGGGCGAAG 58.266 50.000 0.00 0.00 32.78 3.79
2287 5233 1.807742 CAACAACTAATTCCGGGCGAA 59.192 47.619 0.00 0.00 34.14 4.70
2288 5234 1.444836 CAACAACTAATTCCGGGCGA 58.555 50.000 0.00 0.00 0.00 5.54
2289 5235 0.179174 GCAACAACTAATTCCGGGCG 60.179 55.000 0.00 0.00 0.00 6.13
2290 5236 0.885196 TGCAACAACTAATTCCGGGC 59.115 50.000 0.00 0.00 0.00 6.13
2291 5237 2.420022 CTCTGCAACAACTAATTCCGGG 59.580 50.000 0.00 0.00 0.00 5.73
2292 5238 3.334691 TCTCTGCAACAACTAATTCCGG 58.665 45.455 0.00 0.00 0.00 5.14
2293 5239 4.201851 CCATCTCTGCAACAACTAATTCCG 60.202 45.833 0.00 0.00 0.00 4.30
2294 5240 4.943705 TCCATCTCTGCAACAACTAATTCC 59.056 41.667 0.00 0.00 0.00 3.01
2295 5241 6.094603 ACATCCATCTCTGCAACAACTAATTC 59.905 38.462 0.00 0.00 0.00 2.17
2296 5242 5.948162 ACATCCATCTCTGCAACAACTAATT 59.052 36.000 0.00 0.00 0.00 1.40
2297 5243 5.503927 ACATCCATCTCTGCAACAACTAAT 58.496 37.500 0.00 0.00 0.00 1.73
2298 5244 4.910195 ACATCCATCTCTGCAACAACTAA 58.090 39.130 0.00 0.00 0.00 2.24
2299 5245 4.558226 ACATCCATCTCTGCAACAACTA 57.442 40.909 0.00 0.00 0.00 2.24
2300 5246 3.430042 ACATCCATCTCTGCAACAACT 57.570 42.857 0.00 0.00 0.00 3.16
2301 5247 5.121811 AGATACATCCATCTCTGCAACAAC 58.878 41.667 0.00 0.00 28.83 3.32
2302 5248 5.363562 AGATACATCCATCTCTGCAACAA 57.636 39.130 0.00 0.00 28.83 2.83
2303 5249 5.835280 TCTAGATACATCCATCTCTGCAACA 59.165 40.000 0.00 0.00 36.63 3.33
2304 5250 6.155827 GTCTAGATACATCCATCTCTGCAAC 58.844 44.000 0.00 0.00 36.63 4.17
2305 5251 5.048434 CGTCTAGATACATCCATCTCTGCAA 60.048 44.000 0.00 0.00 36.63 4.08
2306 5252 4.457257 CGTCTAGATACATCCATCTCTGCA 59.543 45.833 0.00 0.00 36.63 4.41
2307 5253 4.457603 ACGTCTAGATACATCCATCTCTGC 59.542 45.833 0.00 0.00 36.63 4.26
2308 5254 7.857734 ATACGTCTAGATACATCCATCTCTG 57.142 40.000 0.00 0.00 36.63 3.35
2309 5255 8.871629 AAATACGTCTAGATACATCCATCTCT 57.128 34.615 0.00 0.00 36.63 3.10
2326 5272 9.309516 TGGATGTATCAAGAACTAAAATACGTC 57.690 33.333 0.00 0.00 37.78 4.34
2346 5292 6.942005 TCGCATAAATGGATAGAAATGGATGT 59.058 34.615 0.00 0.00 0.00 3.06
2350 5296 6.558771 TGTCGCATAAATGGATAGAAATGG 57.441 37.500 0.00 0.00 0.00 3.16
2351 5297 7.642669 ACTTGTCGCATAAATGGATAGAAATG 58.357 34.615 0.00 0.00 0.00 2.32
2353 5299 8.609176 GTTACTTGTCGCATAAATGGATAGAAA 58.391 33.333 0.00 0.00 0.00 2.52
2354 5300 7.985184 AGTTACTTGTCGCATAAATGGATAGAA 59.015 33.333 0.00 0.00 0.00 2.10
2355 5301 7.497595 AGTTACTTGTCGCATAAATGGATAGA 58.502 34.615 0.00 0.00 0.00 1.98
2356 5302 7.358435 CGAGTTACTTGTCGCATAAATGGATAG 60.358 40.741 0.00 0.00 0.00 2.08
2357 5303 6.419710 CGAGTTACTTGTCGCATAAATGGATA 59.580 38.462 0.00 0.00 0.00 2.59
2358 5304 5.234329 CGAGTTACTTGTCGCATAAATGGAT 59.766 40.000 0.00 0.00 0.00 3.41
2362 5308 4.751060 TCCGAGTTACTTGTCGCATAAAT 58.249 39.130 0.00 0.00 34.78 1.40
2363 5309 4.171005 CTCCGAGTTACTTGTCGCATAAA 58.829 43.478 0.00 0.00 34.78 1.40
2364 5310 3.192001 ACTCCGAGTTACTTGTCGCATAA 59.808 43.478 0.00 0.00 34.78 1.90
2365 5311 2.751259 ACTCCGAGTTACTTGTCGCATA 59.249 45.455 0.00 0.00 34.78 3.14
2366 5312 1.544691 ACTCCGAGTTACTTGTCGCAT 59.455 47.619 0.00 0.00 34.78 4.73
2367 5313 0.956633 ACTCCGAGTTACTTGTCGCA 59.043 50.000 0.00 0.00 34.78 5.10
2368 5314 1.337821 CACTCCGAGTTACTTGTCGC 58.662 55.000 0.00 0.00 34.78 5.19
2369 5315 1.538512 TCCACTCCGAGTTACTTGTCG 59.461 52.381 0.00 0.00 35.91 4.35
2370 5316 2.094649 CCTCCACTCCGAGTTACTTGTC 60.095 54.545 0.00 0.00 0.00 3.18
2371 5317 1.893801 CCTCCACTCCGAGTTACTTGT 59.106 52.381 0.00 0.00 0.00 3.16
2372 5318 1.204941 CCCTCCACTCCGAGTTACTTG 59.795 57.143 0.00 0.00 0.00 3.16
2373 5319 1.076677 TCCCTCCACTCCGAGTTACTT 59.923 52.381 0.00 0.00 0.00 2.24
2374 5320 0.702902 TCCCTCCACTCCGAGTTACT 59.297 55.000 0.00 0.00 0.00 2.24
2375 5321 1.104630 CTCCCTCCACTCCGAGTTAC 58.895 60.000 0.00 0.00 0.00 2.50
2377 5323 0.702902 TACTCCCTCCACTCCGAGTT 59.297 55.000 0.00 0.00 36.91 3.01
2378 5324 0.927767 ATACTCCCTCCACTCCGAGT 59.072 55.000 0.00 0.00 38.97 4.18
2381 5327 0.105039 GCAATACTCCCTCCACTCCG 59.895 60.000 0.00 0.00 0.00 4.63
2382 5328 0.105039 CGCAATACTCCCTCCACTCC 59.895 60.000 0.00 0.00 0.00 3.85
2383 5329 0.824759 ACGCAATACTCCCTCCACTC 59.175 55.000 0.00 0.00 0.00 3.51
2384 5330 1.276622 AACGCAATACTCCCTCCACT 58.723 50.000 0.00 0.00 0.00 4.00
2385 5331 2.973694 TAACGCAATACTCCCTCCAC 57.026 50.000 0.00 0.00 0.00 4.02
2386 5332 5.818678 ATAATAACGCAATACTCCCTCCA 57.181 39.130 0.00 0.00 0.00 3.86
2387 5333 6.228258 TGAATAATAACGCAATACTCCCTCC 58.772 40.000 0.00 0.00 0.00 4.30
2388 5334 7.152645 TCTGAATAATAACGCAATACTCCCTC 58.847 38.462 0.00 0.00 0.00 4.30
2389 5335 7.062749 TCTGAATAATAACGCAATACTCCCT 57.937 36.000 0.00 0.00 0.00 4.20
2390 5336 7.907214 ATCTGAATAATAACGCAATACTCCC 57.093 36.000 0.00 0.00 0.00 4.30
2393 5339 9.764363 TCTGAATCTGAATAATAACGCAATACT 57.236 29.630 0.00 0.00 0.00 2.12
2424 5370 7.169140 GCCGAAAGTGAAGAAAAATATTGTTGT 59.831 33.333 0.00 0.00 0.00 3.32
2425 5371 7.501515 GCCGAAAGTGAAGAAAAATATTGTTG 58.498 34.615 0.00 0.00 0.00 3.33
2426 5372 6.362283 CGCCGAAAGTGAAGAAAAATATTGTT 59.638 34.615 0.00 0.00 0.00 2.83
2427 5373 5.856455 CGCCGAAAGTGAAGAAAAATATTGT 59.144 36.000 0.00 0.00 0.00 2.71
2428 5374 6.083630 TCGCCGAAAGTGAAGAAAAATATTG 58.916 36.000 0.00 0.00 30.08 1.90
2429 5375 6.249035 TCGCCGAAAGTGAAGAAAAATATT 57.751 33.333 0.00 0.00 30.08 1.28
2430 5376 5.873179 TCGCCGAAAGTGAAGAAAAATAT 57.127 34.783 0.00 0.00 30.08 1.28
2431 5377 5.410132 TGATCGCCGAAAGTGAAGAAAAATA 59.590 36.000 0.00 0.00 38.82 1.40
2432 5378 4.215399 TGATCGCCGAAAGTGAAGAAAAAT 59.785 37.500 0.00 0.00 38.82 1.82
2433 5379 3.562141 TGATCGCCGAAAGTGAAGAAAAA 59.438 39.130 0.00 0.00 38.82 1.94
2434 5380 3.135225 TGATCGCCGAAAGTGAAGAAAA 58.865 40.909 0.00 0.00 38.82 2.29
2435 5381 2.736721 CTGATCGCCGAAAGTGAAGAAA 59.263 45.455 0.00 0.00 38.82 2.52
2436 5382 2.029380 TCTGATCGCCGAAAGTGAAGAA 60.029 45.455 0.00 0.00 38.82 2.52
2437 5383 1.544246 TCTGATCGCCGAAAGTGAAGA 59.456 47.619 0.00 0.00 38.82 2.87
2438 5384 1.996292 TCTGATCGCCGAAAGTGAAG 58.004 50.000 0.00 0.00 38.82 3.02
2439 5385 2.448926 TTCTGATCGCCGAAAGTGAA 57.551 45.000 0.00 0.00 38.82 3.18
2440 5386 2.029380 TCTTTCTGATCGCCGAAAGTGA 60.029 45.455 21.33 9.24 43.94 3.41
2441 5387 2.337583 TCTTTCTGATCGCCGAAAGTG 58.662 47.619 21.33 7.71 43.94 3.16
2442 5388 2.028930 ACTCTTTCTGATCGCCGAAAGT 60.029 45.455 21.33 9.59 43.94 2.66
2443 5389 2.600867 GACTCTTTCTGATCGCCGAAAG 59.399 50.000 18.46 18.46 44.56 2.62
2444 5390 2.231478 AGACTCTTTCTGATCGCCGAAA 59.769 45.455 0.00 5.06 31.12 3.46
2445 5391 1.819288 AGACTCTTTCTGATCGCCGAA 59.181 47.619 0.00 0.00 31.12 4.30
2446 5392 1.464734 AGACTCTTTCTGATCGCCGA 58.535 50.000 0.00 0.00 31.12 5.54
2466 5412 4.982916 AGCTACCGTTTCGATGATGTAATC 59.017 41.667 0.00 0.00 45.83 1.75
2467 5413 4.745125 CAGCTACCGTTTCGATGATGTAAT 59.255 41.667 0.00 0.00 0.00 1.89
2468 5414 4.109766 CAGCTACCGTTTCGATGATGTAA 58.890 43.478 0.00 0.00 0.00 2.41
2469 5415 3.490249 CCAGCTACCGTTTCGATGATGTA 60.490 47.826 0.00 0.00 0.00 2.29
2470 5416 2.540515 CAGCTACCGTTTCGATGATGT 58.459 47.619 0.00 0.00 0.00 3.06
2471 5417 1.860950 CCAGCTACCGTTTCGATGATG 59.139 52.381 0.00 0.00 0.00 3.07
2472 5418 1.754803 TCCAGCTACCGTTTCGATGAT 59.245 47.619 0.00 0.00 0.00 2.45
2473 5419 1.179152 TCCAGCTACCGTTTCGATGA 58.821 50.000 0.00 0.00 0.00 2.92
2474 5420 1.860950 CATCCAGCTACCGTTTCGATG 59.139 52.381 0.00 0.00 0.00 3.84
2475 5421 1.806623 GCATCCAGCTACCGTTTCGAT 60.807 52.381 0.00 0.00 41.15 3.59
2476 5422 0.459585 GCATCCAGCTACCGTTTCGA 60.460 55.000 0.00 0.00 41.15 3.71
2477 5423 2.006772 GCATCCAGCTACCGTTTCG 58.993 57.895 0.00 0.00 41.15 3.46
2490 5436 3.923017 AAAGTACTTGTGCAAGCATCC 57.077 42.857 9.34 0.00 41.99 3.51
2529 5545 6.858478 GCAAAACCAGAGAGAAGTTTCATAAC 59.142 38.462 0.00 0.00 32.73 1.89
2532 5548 4.889409 TGCAAAACCAGAGAGAAGTTTCAT 59.111 37.500 0.00 0.00 32.73 2.57
2586 5632 2.035940 ACGGCCTCTCGGAGAAGT 59.964 61.111 9.32 4.50 34.09 3.01
2648 5706 0.466963 ACAAGGGTTCGAGAAACGGT 59.533 50.000 0.00 0.00 42.82 4.83
2661 5719 3.944015 GAGAGAATGGTTCATGACAAGGG 59.056 47.826 0.00 0.00 0.00 3.95
2684 5770 1.134521 ACGAGAGTTGAAGTGCACCAA 60.135 47.619 14.63 8.92 46.40 3.67
2693 5779 5.468746 CCCAATTAAAGACACGAGAGTTGAA 59.531 40.000 0.00 0.00 46.40 2.69
2702 5788 3.566322 TGGTCAACCCAATTAAAGACACG 59.434 43.478 0.00 0.00 41.50 4.49
2739 5858 2.996621 GTTCTCACGTCTCTTTGGGATG 59.003 50.000 0.00 0.00 0.00 3.51
2742 5861 2.408050 CAGTTCTCACGTCTCTTTGGG 58.592 52.381 0.00 0.00 0.00 4.12
2753 5872 1.795286 CGAGTCAAAGGCAGTTCTCAC 59.205 52.381 0.00 0.00 0.00 3.51
2757 5876 1.264288 CAACCGAGTCAAAGGCAGTTC 59.736 52.381 0.00 0.00 0.00 3.01
2804 5923 1.369625 CTGCACGGTGGAAGGATTAC 58.630 55.000 10.60 0.00 0.00 1.89
2807 5926 1.918293 TCCTGCACGGTGGAAGGAT 60.918 57.895 10.60 0.00 0.00 3.24
2880 6049 1.070445 CTGCTGGATAGGCCGGAAG 59.930 63.158 5.05 0.00 46.81 3.46
2901 6070 4.948847 TCGACCCTGATAATCAATGTCTG 58.051 43.478 0.00 0.00 29.72 3.51
2974 6163 8.617290 AAGAACTACAAAAAGTGGTAGTATGG 57.383 34.615 5.03 0.00 46.97 2.74
3021 6210 7.361542 GCTCATATTATTCAGTAACAGGGCATG 60.362 40.741 0.00 0.00 0.00 4.06
3150 6359 4.026052 CCCCAGTTTCTGCTATTTCCATT 58.974 43.478 0.00 0.00 0.00 3.16
3160 6369 0.467290 TGGTTGACCCCAGTTTCTGC 60.467 55.000 0.00 0.00 34.29 4.26
3187 6396 6.868339 GTCATGTTGGCTTTTGTTAAGCTTAT 59.132 34.615 7.08 0.00 42.62 1.73
3227 6436 4.651778 CAAAACCAGTTCTCCAGATGGTA 58.348 43.478 2.85 0.00 45.21 3.25
3253 6462 1.808390 GCCGCGACAAGGTACGAAT 60.808 57.895 8.23 0.00 0.00 3.34
3262 6471 2.106074 CCAGCTAATGCCGCGACAA 61.106 57.895 8.23 0.00 40.80 3.18
3316 6525 5.815233 TGAAACAGCAATGGGGAAAATAA 57.185 34.783 0.00 0.00 0.00 1.40
3318 6527 4.914177 ATGAAACAGCAATGGGGAAAAT 57.086 36.364 0.00 0.00 0.00 1.82
3322 6532 3.173953 AGAATGAAACAGCAATGGGGA 57.826 42.857 0.00 0.00 0.00 4.81
3361 6571 5.509501 GCATCAGGAGAGAATAGTTCAGGAG 60.510 48.000 0.00 0.00 0.00 3.69
3364 6574 5.163426 ACTGCATCAGGAGAGAATAGTTCAG 60.163 44.000 0.00 0.00 36.58 3.02
3397 6607 2.501316 GGCCAAATAAGCCCAAAGACAT 59.499 45.455 0.00 0.00 45.16 3.06
3414 6624 2.309613 CCAAAATGCTAGCATAGGCCA 58.690 47.619 29.77 0.09 42.56 5.36
3420 6630 3.902218 TCTAAGCCCAAAATGCTAGCAT 58.098 40.909 24.67 24.67 38.34 3.79
3457 6667 1.373748 GGAGCGTGGCACGAAAGTA 60.374 57.895 40.94 0.00 46.05 2.24
3667 6877 2.325082 GGGGCACTAGCGTTGTGTG 61.325 63.158 8.17 3.60 43.41 3.82
3700 6912 0.690762 GGGGAAGCAGTTGAGTACCA 59.309 55.000 0.00 0.00 0.00 3.25
3701 6913 0.984995 AGGGGAAGCAGTTGAGTACC 59.015 55.000 0.00 0.00 0.00 3.34
3748 6960 2.223829 CCATAGATGTGTCTGGGTCGAC 60.224 54.545 7.13 7.13 35.87 4.20
3807 7021 3.570559 GCATAGCTACCTCGCTTTCTAG 58.429 50.000 0.00 0.00 41.30 2.43
3835 7049 0.961019 GCCACATTTTCTCACCAGCA 59.039 50.000 0.00 0.00 0.00 4.41
3837 7051 2.030540 CACTGCCACATTTTCTCACCAG 60.031 50.000 0.00 0.00 0.00 4.00
3838 7052 1.955778 CACTGCCACATTTTCTCACCA 59.044 47.619 0.00 0.00 0.00 4.17
3839 7053 1.270550 CCACTGCCACATTTTCTCACC 59.729 52.381 0.00 0.00 0.00 4.02
3840 7054 2.229792 TCCACTGCCACATTTTCTCAC 58.770 47.619 0.00 0.00 0.00 3.51
3841 7055 2.655090 TCCACTGCCACATTTTCTCA 57.345 45.000 0.00 0.00 0.00 3.27
3875 7100 2.666862 CGCCACCGCTACAACCAA 60.667 61.111 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.