Multiple sequence alignment - TraesCS7B01G405100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G405100 chr7B 100.000 8595 0 0 1 8595 673312644 673304050 0.000000e+00 15873.0
1 TraesCS7B01G405100 chr7B 81.759 614 89 13 7760 8356 672914867 672914260 7.750000e-135 492.0
2 TraesCS7B01G405100 chr7B 77.761 679 96 27 7760 8428 672841601 672840968 4.900000e-97 366.0
3 TraesCS7B01G405100 chr7B 80.000 520 58 26 7083 7571 672842411 672841907 8.260000e-90 342.0
4 TraesCS7B01G405100 chr7B 82.131 291 42 7 7760 8047 673123935 673123652 3.100000e-59 241.0
5 TraesCS7B01G405100 chr7B 82.332 283 30 13 6341 6615 672843771 672843501 2.410000e-55 228.0
6 TraesCS7B01G405100 chr7B 87.701 187 19 2 7570 7753 672841824 672841639 1.880000e-51 215.0
7 TraesCS7B01G405100 chr7B 80.335 239 36 7 8353 8590 673136346 673136118 4.130000e-38 171.0
8 TraesCS7B01G405100 chr7B 84.146 164 20 3 8123 8281 673136533 673136371 4.150000e-33 154.0
9 TraesCS7B01G405100 chr7B 85.526 76 11 0 8495 8570 672840600 672840525 7.150000e-11 80.5
10 TraesCS7B01G405100 chr7D 96.308 5228 130 28 2579 7760 595729060 595723850 0.000000e+00 8527.0
11 TraesCS7B01G405100 chr7D 94.739 2585 103 10 1 2584 595731721 595729169 0.000000e+00 3989.0
12 TraesCS7B01G405100 chr7D 94.502 582 23 4 7760 8337 595723820 595723244 0.000000e+00 889.0
13 TraesCS7B01G405100 chr7D 95.455 286 9 2 8310 8595 595723234 595722953 3.660000e-123 453.0
14 TraesCS7B01G405100 chr7D 80.293 614 101 11 7760 8356 595604494 595603884 6.120000e-121 446.0
15 TraesCS7B01G405100 chr7D 83.058 484 46 17 8123 8595 595613161 595612703 2.890000e-109 407.0
16 TraesCS7B01G405100 chr7D 78.281 663 85 33 7760 8403 595578121 595577499 1.050000e-98 372.0
17 TraesCS7B01G405100 chr7D 79.493 473 56 15 8123 8590 595665557 595665121 1.810000e-76 298.0
18 TraesCS7B01G405100 chr7D 83.448 290 41 5 7760 8047 595613479 595613195 6.620000e-66 263.0
19 TraesCS7B01G405100 chr7D 80.707 311 44 9 7134 7432 595605119 595604813 2.410000e-55 228.0
20 TraesCS7B01G405100 chr7D 81.295 278 31 4 7317 7573 595666651 595666374 1.130000e-48 206.0
21 TraesCS7B01G405100 chr7D 78.209 335 42 13 6780 7087 595605947 595605617 1.470000e-42 185.0
22 TraesCS7B01G405100 chr7D 94.898 98 4 1 6992 7089 595531873 595531777 1.490000e-32 152.0
23 TraesCS7B01G405100 chr7D 88.608 79 6 2 6545 6622 595580493 595580417 9.190000e-15 93.5
24 TraesCS7B01G405100 chr7A 96.308 4659 121 19 3141 7760 688690572 688685926 0.000000e+00 7603.0
25 TraesCS7B01G405100 chr7A 93.049 2532 114 21 1 2508 688694078 688691585 0.000000e+00 3644.0
26 TraesCS7B01G405100 chr7A 91.168 702 41 9 7760 8445 688685896 688685200 0.000000e+00 933.0
27 TraesCS7B01G405100 chr7A 97.148 526 15 0 2580 3105 688691097 688690572 0.000000e+00 889.0
28 TraesCS7B01G405100 chr7A 79.123 661 92 26 7751 8403 688457016 688456394 1.730000e-111 414.0
29 TraesCS7B01G405100 chr7A 81.395 516 57 22 7083 7571 688457817 688457314 1.350000e-102 385.0
30 TraesCS7B01G405100 chr7A 79.876 482 63 20 8123 8593 688626899 688626441 1.080000e-83 322.0
31 TraesCS7B01G405100 chr7A 85.283 265 33 5 7784 8047 688627192 688626933 1.420000e-67 268.0
32 TraesCS7B01G405100 chr7A 81.323 257 28 13 6198 6447 688459549 688459306 3.170000e-44 191.0
33 TraesCS7B01G405100 chr7A 85.366 164 18 3 8123 8281 688662654 688662492 1.920000e-36 165.0
34 TraesCS7B01G405100 chr7A 78.114 297 37 18 7760 8049 688662961 688662686 6.900000e-36 163.0
35 TraesCS7B01G405100 chr7A 82.199 191 23 6 8358 8547 688662483 688662303 4.150000e-33 154.0
36 TraesCS7B01G405100 chr7A 84.564 149 17 4 8447 8595 688456051 688455909 8.990000e-30 143.0
37 TraesCS7B01G405100 chr7A 94.872 78 4 0 2507 2584 688691284 688691207 1.170000e-23 122.0
38 TraesCS7B01G405100 chr2A 80.998 521 64 24 1762 2278 714211911 714211422 1.750000e-101 381.0
39 TraesCS7B01G405100 chr2B 90.602 266 24 1 2005 2270 692167160 692166896 1.370000e-92 351.0
40 TraesCS7B01G405100 chr2D 90.805 261 23 1 2005 2265 576195691 576195432 1.780000e-91 348.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G405100 chr7B 673304050 673312644 8594 True 15873.000000 15873 100.000000 1 8595 1 chr7B.!!$R3 8594
1 TraesCS7B01G405100 chr7B 672914260 672914867 607 True 492.000000 492 81.759000 7760 8356 1 chr7B.!!$R1 596
2 TraesCS7B01G405100 chr7B 672840525 672843771 3246 True 246.300000 366 82.664000 6341 8570 5 chr7B.!!$R4 2229
3 TraesCS7B01G405100 chr7D 595722953 595731721 8768 True 3464.500000 8527 95.251000 1 8595 4 chr7D.!!$R6 8594
4 TraesCS7B01G405100 chr7D 595612703 595613479 776 True 335.000000 407 83.253000 7760 8595 2 chr7D.!!$R4 835
5 TraesCS7B01G405100 chr7D 595603884 595605947 2063 True 286.333333 446 79.736333 6780 8356 3 chr7D.!!$R3 1576
6 TraesCS7B01G405100 chr7D 595665121 595666651 1530 True 252.000000 298 80.394000 7317 8590 2 chr7D.!!$R5 1273
7 TraesCS7B01G405100 chr7D 595577499 595580493 2994 True 232.750000 372 83.444500 6545 8403 2 chr7D.!!$R2 1858
8 TraesCS7B01G405100 chr7A 688685200 688694078 8878 True 2638.200000 7603 94.509000 1 8445 5 chr7A.!!$R4 8444
9 TraesCS7B01G405100 chr7A 688626441 688627192 751 True 295.000000 322 82.579500 7784 8593 2 chr7A.!!$R2 809
10 TraesCS7B01G405100 chr7A 688455909 688459549 3640 True 283.250000 414 81.601250 6198 8595 4 chr7A.!!$R1 2397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.109597 CCGTGATTGCTTTCACCTGC 60.110 55.000 12.15 0.0 42.46 4.85 F
529 534 0.110056 GCCACAGTCATGAGCGTTTG 60.110 55.000 0.00 0.0 0.00 2.93 F
551 556 0.603707 TGTCTGCCTTGAAAGCGGAG 60.604 55.000 0.00 0.0 45.98 4.63 F
1436 1460 0.868406 AAGCGTCCGAGCAAAAAGAG 59.132 50.000 0.00 0.0 40.15 2.85 F
2540 2866 0.321298 ACCAGTGGTCGGCATGTTAC 60.321 55.000 9.70 0.0 0.00 2.50 F
3112 3554 1.349026 AGTTGCTGGATGCTACACAGT 59.651 47.619 5.24 0.0 46.97 3.55 F
4126 4572 2.289694 GCTGCCTCTCCAAGAAACTGTA 60.290 50.000 0.00 0.0 0.00 2.74 F
4463 4910 2.736670 AATATGGTGGAACAGGGCTC 57.263 50.000 0.00 0.0 41.80 4.70 F
5186 5636 0.948623 CCGAGCCGACACAACATCAA 60.949 55.000 0.00 0.0 0.00 2.57 F
5969 6441 1.067142 TCATTACTGGCGTCAGGACAC 60.067 52.381 22.98 0.0 44.99 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1253 1277 0.037882 TTCAGTCAGAAGCCGAGCAG 60.038 55.000 0.00 0.00 0.00 4.24 R
1749 1773 1.311859 TGTGCCTTCTTTGAGCAGTG 58.688 50.000 0.00 0.00 37.15 3.66 R
2540 2866 1.068588 CATGAGCCTGGCCATGAAATG 59.931 52.381 30.29 16.66 46.21 2.32 R
2599 3039 2.291741 CGCAAATAATCAGAAGGGAGGC 59.708 50.000 0.00 0.00 0.00 4.70 R
3892 4337 2.700722 TACATCCAGGCGCATGTTTA 57.299 45.000 21.79 6.37 34.92 2.01 R
4368 4815 3.432749 GCCTTCTCTGCAGGTGATCATAA 60.433 47.826 15.13 0.00 33.40 1.90 R
5186 5636 0.041535 TGAATGCCAGCCCCTGAAAT 59.958 50.000 0.00 0.00 32.44 2.17 R
6036 6510 1.967319 TCCTGTCAAGAAAGTGCCAC 58.033 50.000 0.00 0.00 0.00 5.01 R
6475 7054 2.030805 GGGCACTTGTCTTACAAAGCAG 60.031 50.000 14.73 0.00 39.48 4.24 R
7769 9716 0.040058 TTTGCAGTCAGGCCCATGAT 59.960 50.000 0.00 0.00 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 0.453950 CTGACGCATGCTGTTGCTTC 60.454 55.000 17.13 4.09 40.29 3.86
156 157 1.154150 GACGCATGCTGTTGCTTCC 60.154 57.895 17.13 0.00 40.54 3.46
164 165 0.730494 GCTGTTGCTTCCGTGATTGC 60.730 55.000 0.00 0.00 36.03 3.56
174 175 0.109597 CCGTGATTGCTTTCACCTGC 60.110 55.000 12.15 0.00 42.46 4.85
193 194 2.290464 GCGCCTCTCTCTAGTACTGAA 58.710 52.381 5.39 0.00 0.00 3.02
194 195 2.882137 GCGCCTCTCTCTAGTACTGAAT 59.118 50.000 5.39 0.00 0.00 2.57
210 211 8.918202 AGTACTGAATTGTTTGACTTTATGGA 57.082 30.769 0.00 0.00 0.00 3.41
212 213 7.219484 ACTGAATTGTTTGACTTTATGGAGG 57.781 36.000 0.00 0.00 0.00 4.30
213 214 6.024552 TGAATTGTTTGACTTTATGGAGGC 57.975 37.500 0.00 0.00 0.00 4.70
214 215 5.538053 TGAATTGTTTGACTTTATGGAGGCA 59.462 36.000 0.00 0.00 31.31 4.75
215 216 6.211184 TGAATTGTTTGACTTTATGGAGGCAT 59.789 34.615 0.00 0.00 33.90 4.40
216 217 7.395772 TGAATTGTTTGACTTTATGGAGGCATA 59.604 33.333 0.00 0.00 33.90 3.14
217 218 7.902920 ATTGTTTGACTTTATGGAGGCATAT 57.097 32.000 0.00 0.00 33.90 1.78
218 219 8.995027 ATTGTTTGACTTTATGGAGGCATATA 57.005 30.769 0.00 0.00 33.90 0.86
219 220 7.801716 TGTTTGACTTTATGGAGGCATATAC 57.198 36.000 0.00 0.00 33.90 1.47
220 221 7.573710 TGTTTGACTTTATGGAGGCATATACT 58.426 34.615 0.00 0.00 33.90 2.12
221 222 8.052748 TGTTTGACTTTATGGAGGCATATACTT 58.947 33.333 0.00 0.00 33.90 2.24
222 223 8.345565 GTTTGACTTTATGGAGGCATATACTTG 58.654 37.037 0.00 0.00 33.90 3.16
223 224 7.136822 TGACTTTATGGAGGCATATACTTGT 57.863 36.000 0.00 0.00 27.08 3.16
224 225 6.992123 TGACTTTATGGAGGCATATACTTGTG 59.008 38.462 0.00 0.00 27.08 3.33
225 226 5.765182 ACTTTATGGAGGCATATACTTGTGC 59.235 40.000 0.00 0.00 39.09 4.57
241 242 4.037923 ACTTGTGCCTTCATTCGATTTGTT 59.962 37.500 0.00 0.00 0.00 2.83
256 257 1.967319 TTGTTGTGACTTGGCCTCTC 58.033 50.000 3.32 0.00 0.00 3.20
260 261 1.649321 TGTGACTTGGCCTCTCATCT 58.351 50.000 3.32 0.00 0.00 2.90
323 324 8.922058 ATTTGCATCTGTCATATTTTCTTCAC 57.078 30.769 0.00 0.00 0.00 3.18
324 325 6.110543 TGCATCTGTCATATTTTCTTCACG 57.889 37.500 0.00 0.00 0.00 4.35
335 336 5.888412 ATTTTCTTCACGATTGTGTTTGC 57.112 34.783 12.90 0.00 46.49 3.68
341 342 0.593128 ACGATTGTGTTTGCTCCTGC 59.407 50.000 0.00 0.00 40.20 4.85
399 400 0.681175 ATGTGCCTTTTTCACTGCCC 59.319 50.000 0.00 0.00 35.58 5.36
421 422 2.173356 TCCCATGATCCGAAAATGCTCT 59.827 45.455 0.00 0.00 0.00 4.09
422 423 2.551459 CCCATGATCCGAAAATGCTCTC 59.449 50.000 0.00 0.00 0.00 3.20
423 424 3.474600 CCATGATCCGAAAATGCTCTCT 58.525 45.455 0.00 0.00 0.00 3.10
445 446 1.296715 GCTGCCTCGAAGAAAGGGA 59.703 57.895 0.00 0.00 34.09 4.20
468 473 4.253685 AGGTGACATCTTTACGGAATGTG 58.746 43.478 0.00 0.00 0.00 3.21
529 534 0.110056 GCCACAGTCATGAGCGTTTG 60.110 55.000 0.00 0.00 0.00 2.93
540 545 3.034030 GCGTTTGCTTGTCTGCCT 58.966 55.556 0.00 0.00 38.39 4.75
551 556 0.603707 TGTCTGCCTTGAAAGCGGAG 60.604 55.000 0.00 0.00 45.98 4.63
559 564 2.623416 CCTTGAAAGCGGAGTTCCTTTT 59.377 45.455 0.00 0.00 31.85 2.27
586 591 7.021196 GCATTTTCGCTACAGAATTTGACTTA 58.979 34.615 0.00 0.00 0.00 2.24
587 592 7.698130 GCATTTTCGCTACAGAATTTGACTTAT 59.302 33.333 0.00 0.00 0.00 1.73
656 661 3.567397 TCTCCAGCAGATTCCTAGTACC 58.433 50.000 0.00 0.00 0.00 3.34
696 701 5.046448 TCAGCTATTGCCAAATTTGACCATT 60.046 36.000 19.86 13.39 40.80 3.16
735 757 1.243902 TTTTCATTCGGCACCAGGTC 58.756 50.000 0.00 0.00 0.00 3.85
788 812 1.610522 GCTGCTGATCCTCTCTCTCTC 59.389 57.143 0.00 0.00 0.00 3.20
789 813 2.750807 GCTGCTGATCCTCTCTCTCTCT 60.751 54.545 0.00 0.00 0.00 3.10
790 814 3.144506 CTGCTGATCCTCTCTCTCTCTC 58.855 54.545 0.00 0.00 0.00 3.20
791 815 2.779430 TGCTGATCCTCTCTCTCTCTCT 59.221 50.000 0.00 0.00 0.00 3.10
792 816 3.181451 TGCTGATCCTCTCTCTCTCTCTC 60.181 52.174 0.00 0.00 0.00 3.20
793 817 3.072184 GCTGATCCTCTCTCTCTCTCTCT 59.928 52.174 0.00 0.00 0.00 3.10
794 818 4.802248 GCTGATCCTCTCTCTCTCTCTCTC 60.802 54.167 0.00 0.00 0.00 3.20
795 819 4.560739 TGATCCTCTCTCTCTCTCTCTCT 58.439 47.826 0.00 0.00 0.00 3.10
796 820 4.590647 TGATCCTCTCTCTCTCTCTCTCTC 59.409 50.000 0.00 0.00 0.00 3.20
797 821 4.271807 TCCTCTCTCTCTCTCTCTCTCT 57.728 50.000 0.00 0.00 0.00 3.10
798 822 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
799 823 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
800 824 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
801 825 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
802 826 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
803 827 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
804 828 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
805 829 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
806 830 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
807 831 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
808 832 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
828 852 2.203139 TGCAGGTTGGTGGACACG 60.203 61.111 0.00 0.00 0.00 4.49
869 893 1.290324 GCTGTTCTCAGAGCACCGA 59.710 57.895 0.00 0.00 43.76 4.69
872 896 0.884514 TGTTCTCAGAGCACCGAGAG 59.115 55.000 0.00 0.00 39.36 3.20
1023 1047 1.208358 CGACGAGTACCAGTGCGAA 59.792 57.895 0.00 0.00 0.00 4.70
1163 1187 2.512515 GCCTGCTCGTGTGGATCC 60.513 66.667 4.20 4.20 0.00 3.36
1175 1199 1.385347 TGGATCCCCACCGGCTTAT 60.385 57.895 9.90 0.00 37.58 1.73
1186 1210 1.750778 ACCGGCTTATGGAAATTGCAG 59.249 47.619 0.00 0.00 0.00 4.41
1234 1258 6.338214 TGCAATACTTTGTAAAGCATTGGA 57.662 33.333 22.33 19.30 44.38 3.53
1250 1274 6.852404 AGCATTGGAAATATAAGAGGGCTAA 58.148 36.000 0.00 0.00 0.00 3.09
1253 1277 8.678199 GCATTGGAAATATAAGAGGGCTAATAC 58.322 37.037 0.00 0.00 0.00 1.89
1259 1283 4.792521 ATAAGAGGGCTAATACTGCTCG 57.207 45.455 0.00 0.00 35.78 5.03
1264 1288 1.503294 GGCTAATACTGCTCGGCTTC 58.497 55.000 0.00 0.00 0.00 3.86
1268 1292 2.301577 AATACTGCTCGGCTTCTGAC 57.698 50.000 0.00 0.00 0.00 3.51
1269 1293 1.479709 ATACTGCTCGGCTTCTGACT 58.520 50.000 0.00 0.00 0.00 3.41
1344 1368 1.028868 AAATCTTGGAGGAGCAGCGC 61.029 55.000 0.00 0.00 0.00 5.92
1436 1460 0.868406 AAGCGTCCGAGCAAAAAGAG 59.132 50.000 0.00 0.00 40.15 2.85
1458 1482 5.595885 AGTGATGACCATTCTCGTAATCAG 58.404 41.667 0.00 0.00 32.74 2.90
1479 1503 6.286758 TCAGGAGCTTAAAATAGATGCAGAG 58.713 40.000 0.00 0.00 0.00 3.35
1711 1735 3.142174 GCTCACCAGGTATGCTTTATCC 58.858 50.000 8.35 0.00 0.00 2.59
1749 1773 5.924475 ACAACTTGCTATGTACACAAGAC 57.076 39.130 23.93 11.07 42.71 3.01
1750 1774 5.364778 ACAACTTGCTATGTACACAAGACA 58.635 37.500 23.93 12.92 42.71 3.41
1754 1778 3.325870 TGCTATGTACACAAGACACTGC 58.674 45.455 10.52 0.00 0.00 4.40
1783 1807 1.015109 GCACATGATGGAGCACTGAG 58.985 55.000 0.00 0.00 0.00 3.35
1949 1973 1.491563 CCTTCGTCGCCGACTTTTG 59.508 57.895 16.07 0.00 44.13 2.44
2497 2521 2.288886 GGAACCAGTCGCTTCTTGTAGT 60.289 50.000 0.00 0.00 0.00 2.73
2540 2866 0.321298 ACCAGTGGTCGGCATGTTAC 60.321 55.000 9.70 0.00 0.00 2.50
2599 3039 7.997107 ATTGCATGCTGTTCTATATTTTGTG 57.003 32.000 20.33 0.00 0.00 3.33
2629 3069 6.404734 CCTTCTGATTATTTGCGCTTTAGGTT 60.405 38.462 9.73 0.00 0.00 3.50
2635 3075 6.914760 TTATTTGCGCTTTAGGTTAAAACG 57.085 33.333 9.73 1.29 39.47 3.60
2692 3132 2.880963 TCCAAAAAGCCAAGGAAACG 57.119 45.000 0.00 0.00 0.00 3.60
2743 3185 4.331168 GGTTTGCATCTTGTAGCAGTCTAG 59.669 45.833 0.00 0.00 42.39 2.43
2754 3196 8.728833 TCTTGTAGCAGTCTAGTTTACTCTAAC 58.271 37.037 0.00 0.00 0.00 2.34
2787 3229 6.701340 TGAGCTGTAAGTCAGAATTGTACAT 58.299 36.000 0.00 0.00 46.27 2.29
3105 3547 1.871418 TCTAGGAGTTGCTGGATGCT 58.129 50.000 0.00 0.00 43.37 3.79
3112 3554 1.349026 AGTTGCTGGATGCTACACAGT 59.651 47.619 5.24 0.00 46.97 3.55
3126 3568 4.689345 GCTACACAGTAACACCCACTAAAG 59.311 45.833 0.00 0.00 0.00 1.85
3181 3624 6.092955 TCCCACTGTGTTACTTGTAGTAAG 57.907 41.667 7.08 0.00 40.95 2.34
3257 3700 6.651975 AACAATTATCCAAAACCGTTGGTA 57.348 33.333 5.08 0.00 40.40 3.25
3514 3959 7.939784 AATAACTACCTTTTCTCCCATGTTC 57.060 36.000 0.00 0.00 0.00 3.18
3549 3994 3.982701 CGTTAACACGTCAACCTGTATCA 59.017 43.478 6.39 0.00 41.84 2.15
3558 4003 3.260884 GTCAACCTGTATCAGACCCAGAA 59.739 47.826 0.00 0.00 32.44 3.02
3566 4011 6.126863 TGTATCAGACCCAGAATCAAACTT 57.873 37.500 0.00 0.00 0.00 2.66
3629 4074 8.308931 ACATTCATGTATCTGCAAATTGACTTT 58.691 29.630 0.00 0.00 39.68 2.66
3736 4181 9.788960 GGATTTCGCTTACTTAAAATGATTTCT 57.211 29.630 0.00 0.00 0.00 2.52
3876 4321 4.593956 ACCAGCCTTTAAAGAGATTGGAG 58.406 43.478 22.64 6.79 0.00 3.86
4126 4572 2.289694 GCTGCCTCTCCAAGAAACTGTA 60.290 50.000 0.00 0.00 0.00 2.74
4368 4815 9.305555 TCTCCTTTTCTCATGATTCTTTCAATT 57.694 29.630 0.00 0.00 38.03 2.32
4463 4910 2.736670 AATATGGTGGAACAGGGCTC 57.263 50.000 0.00 0.00 41.80 4.70
4971 5421 5.244626 AGTTCTTTGGCAGCAATCTTATGTT 59.755 36.000 0.00 0.00 0.00 2.71
5186 5636 0.948623 CCGAGCCGACACAACATCAA 60.949 55.000 0.00 0.00 0.00 2.57
5640 6091 1.667236 TCAAGCCAATAGGTGCATCG 58.333 50.000 0.00 0.00 37.19 3.84
5652 6103 3.149196 AGGTGCATCGTTTTCATGAACT 58.851 40.909 7.89 0.00 31.14 3.01
5694 6146 3.711863 ATGGAGCAAAAAGCCTAATCCA 58.288 40.909 0.00 0.00 44.80 3.41
5744 6196 7.888424 TGAACTTAAAAATAGGCAAGGGTTAC 58.112 34.615 0.00 0.00 0.00 2.50
5884 6336 1.484653 TCACCATGGTCCGGTATTGAG 59.515 52.381 16.53 0.00 34.02 3.02
5969 6441 1.067142 TCATTACTGGCGTCAGGACAC 60.067 52.381 22.98 0.00 44.99 3.67
6036 6510 4.318332 TGCTCTTCTGTTGACAATGGTAG 58.682 43.478 0.00 0.00 0.00 3.18
6169 6643 7.092079 CCTGAAGACAATGAGATGATAGCTAG 58.908 42.308 0.00 0.00 0.00 3.42
6276 6761 4.897509 ATTCATGTTCTCTGTCTCACCA 57.102 40.909 0.00 0.00 0.00 4.17
6307 6793 6.151648 CCCATGTTACTTCATGATTGTCTGTT 59.848 38.462 0.00 0.00 45.41 3.16
6315 6801 7.198390 ACTTCATGATTGTCTGTTTTTGTGAG 58.802 34.615 0.00 0.00 0.00 3.51
6353 6841 1.755179 ATGACATGCAGTTAGGTGCC 58.245 50.000 0.00 0.00 43.28 5.01
6475 7054 5.357878 TCAAATGTTCATGTTATCTCTGCCC 59.642 40.000 0.00 0.00 0.00 5.36
6753 7714 6.398918 TCATAGACTTGCCTAGACTTTGAAC 58.601 40.000 0.00 0.00 35.20 3.18
6775 7736 4.107586 GAACGCATCGACATATTGTGAG 57.892 45.455 3.67 0.00 0.00 3.51
6776 7737 3.436700 ACGCATCGACATATTGTGAGA 57.563 42.857 3.67 0.00 0.00 3.27
6777 7738 3.780902 ACGCATCGACATATTGTGAGAA 58.219 40.909 3.67 0.00 0.00 2.87
6857 7820 0.478072 TGTGTTTCTGGCCATGAGGT 59.522 50.000 5.51 0.00 37.19 3.85
6914 7923 2.027837 GCATGGGATTTCTTTGTGGCTT 60.028 45.455 0.00 0.00 0.00 4.35
6969 7979 7.942341 GGGATTATGGACCATTATGTTAAGTCA 59.058 37.037 13.40 0.00 0.00 3.41
7127 8601 3.608316 AAAACAAAAGAGTGCCTGCAA 57.392 38.095 0.00 0.00 0.00 4.08
7384 8881 7.913674 AGCTTACTCAAACTTTAGATCCTTG 57.086 36.000 0.00 0.00 0.00 3.61
7532 9058 5.530915 TGCCGAGATATTTGTGGATTAAAGG 59.469 40.000 0.00 0.00 0.00 3.11
7664 9579 0.625316 TGCTGTGGATAACATGGCCT 59.375 50.000 3.32 0.00 38.39 5.19
7739 9654 4.954875 AGTTCCTATGCTAGAGATTGTGC 58.045 43.478 0.00 0.00 0.00 4.57
7767 9714 4.818546 ACATTCTTCGGATCATTGACATCC 59.181 41.667 0.00 0.00 37.10 3.51
7769 9716 4.486125 TCTTCGGATCATTGACATCCAA 57.514 40.909 7.02 0.00 40.09 3.53
7916 9867 4.088823 GAGCACTCCATAAAGCAGTTTG 57.911 45.455 0.00 0.00 0.00 2.93
7922 10116 4.520492 ACTCCATAAAGCAGTTTGGAAGTG 59.480 41.667 0.00 0.00 37.78 3.16
7959 10169 2.290705 CCCCCACAAGGATAAGAAACGT 60.291 50.000 0.00 0.00 38.24 3.99
8104 10324 6.636666 ATTTGCATCAAATCTTGCTTTACG 57.363 33.333 0.00 0.00 39.50 3.18
8113 10349 3.851976 TCTTGCTTTACGTCTCCTCTC 57.148 47.619 0.00 0.00 0.00 3.20
8114 10350 2.492484 TCTTGCTTTACGTCTCCTCTCC 59.508 50.000 0.00 0.00 0.00 3.71
8115 10351 2.217510 TGCTTTACGTCTCCTCTCCT 57.782 50.000 0.00 0.00 0.00 3.69
8116 10352 2.093106 TGCTTTACGTCTCCTCTCCTC 58.907 52.381 0.00 0.00 0.00 3.71
8117 10353 2.291024 TGCTTTACGTCTCCTCTCCTCT 60.291 50.000 0.00 0.00 0.00 3.69
8125 10361 3.551846 GTCTCCTCTCCTCTTACCTGAG 58.448 54.545 0.00 0.00 0.00 3.35
8220 10461 1.844687 AAAGATCTGGCCCTGCTTTC 58.155 50.000 0.00 0.00 0.00 2.62
8300 10562 4.432741 GCTGAAGGGGGCCTGACC 62.433 72.222 0.84 2.68 32.13 4.02
8337 10599 2.834113 CTCCTCCCCTTTCTTCAGGTA 58.166 52.381 0.00 0.00 30.96 3.08
8341 10603 1.633945 TCCCCTTTCTTCAGGTAAGGC 59.366 52.381 0.00 0.00 37.66 4.35
8350 10650 1.077716 CAGGTAAGGCGAAAGGGGG 60.078 63.158 0.00 0.00 0.00 5.40
8509 11171 1.734137 CCCGGTTCGTCATCTCGAT 59.266 57.895 0.00 0.00 39.57 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 1.792301 CAACAGCATGCGTCAGGAG 59.208 57.895 13.01 0.25 42.53 3.69
164 165 0.739112 GAGAGAGGCGCAGGTGAAAG 60.739 60.000 10.83 0.00 0.00 2.62
174 175 4.336993 ACAATTCAGTACTAGAGAGAGGCG 59.663 45.833 0.00 0.00 0.00 5.52
193 194 7.902920 ATATGCCTCCATAAAGTCAAACAAT 57.097 32.000 0.00 0.00 37.47 2.71
194 195 8.052748 AGTATATGCCTCCATAAAGTCAAACAA 58.947 33.333 0.00 0.00 37.47 2.83
212 213 4.511454 TCGAATGAAGGCACAAGTATATGC 59.489 41.667 0.00 0.00 41.29 3.14
213 214 6.791887 ATCGAATGAAGGCACAAGTATATG 57.208 37.500 0.00 0.00 0.00 1.78
214 215 7.283127 ACAAATCGAATGAAGGCACAAGTATAT 59.717 33.333 8.40 0.00 0.00 0.86
215 216 6.597672 ACAAATCGAATGAAGGCACAAGTATA 59.402 34.615 8.40 0.00 0.00 1.47
216 217 5.415701 ACAAATCGAATGAAGGCACAAGTAT 59.584 36.000 8.40 0.00 0.00 2.12
217 218 4.759693 ACAAATCGAATGAAGGCACAAGTA 59.240 37.500 8.40 0.00 0.00 2.24
218 219 3.569701 ACAAATCGAATGAAGGCACAAGT 59.430 39.130 8.40 0.00 0.00 3.16
219 220 4.164822 ACAAATCGAATGAAGGCACAAG 57.835 40.909 8.40 0.00 0.00 3.16
220 221 4.202101 ACAACAAATCGAATGAAGGCACAA 60.202 37.500 8.40 0.00 0.00 3.33
221 222 3.317711 ACAACAAATCGAATGAAGGCACA 59.682 39.130 8.40 0.00 0.00 4.57
222 223 3.670055 CACAACAAATCGAATGAAGGCAC 59.330 43.478 8.40 0.00 0.00 5.01
223 224 3.567585 TCACAACAAATCGAATGAAGGCA 59.432 39.130 8.40 0.00 0.00 4.75
224 225 3.914364 GTCACAACAAATCGAATGAAGGC 59.086 43.478 8.40 0.00 0.00 4.35
225 226 5.362556 AGTCACAACAAATCGAATGAAGG 57.637 39.130 8.40 1.02 0.00 3.46
241 242 1.649321 AGATGAGAGGCCAAGTCACA 58.351 50.000 5.01 0.00 0.00 3.58
256 257 3.269178 GAGCTGACCTCTCCAAAAGATG 58.731 50.000 0.00 0.00 37.60 2.90
260 261 3.795688 ATTGAGCTGACCTCTCCAAAA 57.204 42.857 0.00 0.00 41.35 2.44
323 324 0.453282 CGCAGGAGCAAACACAATCG 60.453 55.000 0.00 0.00 42.27 3.34
324 325 3.389741 CGCAGGAGCAAACACAATC 57.610 52.632 0.00 0.00 42.27 2.67
399 400 2.551459 GAGCATTTTCGGATCATGGGAG 59.449 50.000 0.00 0.00 0.00 4.30
421 422 0.900182 TTCTTCGAGGCAGCAGGAGA 60.900 55.000 0.00 0.00 0.00 3.71
422 423 0.036952 TTTCTTCGAGGCAGCAGGAG 60.037 55.000 0.00 0.00 0.00 3.69
423 424 0.036952 CTTTCTTCGAGGCAGCAGGA 60.037 55.000 0.00 0.00 0.00 3.86
445 446 4.695455 CACATTCCGTAAAGATGTCACCTT 59.305 41.667 0.00 0.00 0.00 3.50
468 473 1.801178 CTCCTTTTCACGAAGCTCCAC 59.199 52.381 0.00 0.00 0.00 4.02
529 534 0.386478 CGCTTTCAAGGCAGACAAGC 60.386 55.000 0.00 12.33 37.16 4.01
534 539 0.108585 AACTCCGCTTTCAAGGCAGA 59.891 50.000 0.00 0.00 0.00 4.26
535 540 0.519077 GAACTCCGCTTTCAAGGCAG 59.481 55.000 0.00 0.00 0.00 4.85
540 545 2.360801 CCAAAAGGAACTCCGCTTTCAA 59.639 45.455 0.00 0.00 38.49 2.69
551 556 2.754472 AGCGAAAATGCCAAAAGGAAC 58.246 42.857 0.00 0.00 34.65 3.62
559 564 4.217334 TCAAATTCTGTAGCGAAAATGCCA 59.783 37.500 0.00 0.00 34.65 4.92
656 661 2.161012 AGCTGATCAACTGAATTGCACG 59.839 45.455 0.00 0.00 38.29 5.34
724 746 4.025401 GTTTGCGACCTGGTGCCG 62.025 66.667 2.82 3.39 0.00 5.69
788 812 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
789 813 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
790 814 4.501229 GCAGAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
791 815 3.386078 GCAGAGAGAGAGAGAGAGAGAGA 59.614 52.174 0.00 0.00 0.00 3.10
792 816 3.133542 TGCAGAGAGAGAGAGAGAGAGAG 59.866 52.174 0.00 0.00 0.00 3.20
793 817 3.106827 TGCAGAGAGAGAGAGAGAGAGA 58.893 50.000 0.00 0.00 0.00 3.10
794 818 3.464907 CTGCAGAGAGAGAGAGAGAGAG 58.535 54.545 8.42 0.00 0.00 3.20
795 819 2.171237 CCTGCAGAGAGAGAGAGAGAGA 59.829 54.545 17.39 0.00 0.00 3.10
796 820 2.092753 ACCTGCAGAGAGAGAGAGAGAG 60.093 54.545 17.39 0.00 0.00 3.20
797 821 1.915489 ACCTGCAGAGAGAGAGAGAGA 59.085 52.381 17.39 0.00 0.00 3.10
798 822 2.424601 CAACCTGCAGAGAGAGAGAGAG 59.575 54.545 17.39 0.00 0.00 3.20
799 823 2.445427 CAACCTGCAGAGAGAGAGAGA 58.555 52.381 17.39 0.00 0.00 3.10
800 824 1.477700 CCAACCTGCAGAGAGAGAGAG 59.522 57.143 17.39 0.00 0.00 3.20
801 825 1.203112 ACCAACCTGCAGAGAGAGAGA 60.203 52.381 17.39 0.00 0.00 3.10
802 826 1.067000 CACCAACCTGCAGAGAGAGAG 60.067 57.143 17.39 0.00 0.00 3.20
803 827 0.972134 CACCAACCTGCAGAGAGAGA 59.028 55.000 17.39 0.00 0.00 3.10
804 828 0.036577 CCACCAACCTGCAGAGAGAG 60.037 60.000 17.39 0.00 0.00 3.20
805 829 0.471780 TCCACCAACCTGCAGAGAGA 60.472 55.000 17.39 0.00 0.00 3.10
806 830 0.321122 GTCCACCAACCTGCAGAGAG 60.321 60.000 17.39 0.15 0.00 3.20
807 831 1.053835 TGTCCACCAACCTGCAGAGA 61.054 55.000 17.39 0.00 0.00 3.10
808 832 0.886490 GTGTCCACCAACCTGCAGAG 60.886 60.000 17.39 8.04 0.00 3.35
828 852 4.856115 AGTCGTAGCGTAACTAACTCTC 57.144 45.455 0.00 0.00 30.90 3.20
869 893 6.861065 TTCTACTTCAAATTTCAACGCTCT 57.139 33.333 0.00 0.00 0.00 4.09
872 896 9.394477 ACTAATTTCTACTTCAAATTTCAACGC 57.606 29.630 0.00 0.00 35.52 4.84
977 1001 9.512435 CCATCTTTCTTTTATATCAAGCACTTG 57.488 33.333 3.94 3.94 41.71 3.16
1023 1047 1.069823 GGTGCGACCTCATCATCAGAT 59.930 52.381 0.00 0.00 34.73 2.90
1157 1181 1.385347 ATAAGCCGGTGGGGATCCA 60.385 57.895 15.23 0.00 41.58 3.41
1163 1187 1.408702 CAATTTCCATAAGCCGGTGGG 59.591 52.381 1.90 0.00 36.15 4.61
1173 1197 3.200605 TCTCAGAGCCTGCAATTTCCATA 59.799 43.478 0.00 0.00 0.00 2.74
1175 1199 1.352017 TCTCAGAGCCTGCAATTTCCA 59.648 47.619 0.00 0.00 0.00 3.53
1186 1210 1.365368 GAAGCGCCTTTCTCAGAGCC 61.365 60.000 2.29 0.00 0.00 4.70
1234 1258 7.324178 CGAGCAGTATTAGCCCTCTTATATTT 58.676 38.462 0.00 0.00 0.00 1.40
1243 1267 0.760945 AGCCGAGCAGTATTAGCCCT 60.761 55.000 0.00 0.00 0.00 5.19
1250 1274 1.135915 CAGTCAGAAGCCGAGCAGTAT 59.864 52.381 0.00 0.00 0.00 2.12
1253 1277 0.037882 TTCAGTCAGAAGCCGAGCAG 60.038 55.000 0.00 0.00 0.00 4.24
1264 1288 1.018226 CGGCCAAGCTCTTCAGTCAG 61.018 60.000 2.24 0.00 0.00 3.51
1268 1292 0.739112 GAGACGGCCAAGCTCTTCAG 60.739 60.000 2.24 0.00 0.00 3.02
1269 1293 1.188219 AGAGACGGCCAAGCTCTTCA 61.188 55.000 11.97 0.00 35.59 3.02
1344 1368 8.975439 GCAGCATAATAATTTTCATCCTGAAAG 58.025 33.333 2.88 0.00 45.77 2.62
1436 1460 4.747108 CCTGATTACGAGAATGGTCATCAC 59.253 45.833 0.00 0.00 33.46 3.06
1458 1482 6.986817 TGTACTCTGCATCTATTTTAAGCTCC 59.013 38.462 0.00 0.00 0.00 4.70
1711 1735 5.741982 GCAAGTTGTAACTGGTGTAAACTTG 59.258 40.000 17.43 17.43 44.37 3.16
1749 1773 1.311859 TGTGCCTTCTTTGAGCAGTG 58.688 50.000 0.00 0.00 37.15 3.66
1750 1774 1.884579 CATGTGCCTTCTTTGAGCAGT 59.115 47.619 0.00 0.00 37.15 4.40
1754 1778 3.349927 TCCATCATGTGCCTTCTTTGAG 58.650 45.455 0.00 0.00 0.00 3.02
1783 1807 3.733337 ACCCTATCATCGAAGTTCATGC 58.267 45.455 3.32 0.00 0.00 4.06
1949 1973 4.872691 AGCAGTGAACAGTATATGAAGCAC 59.127 41.667 0.00 0.00 0.00 4.40
2011 2035 8.984764 GGTTTTACCAATAACATCCTGAAAAAC 58.015 33.333 0.00 0.00 38.42 2.43
2467 2491 2.089980 GCGACTGGTTCCTACAGAGTA 58.910 52.381 0.00 0.00 39.24 2.59
2540 2866 1.068588 CATGAGCCTGGCCATGAAATG 59.931 52.381 30.29 16.66 46.21 2.32
2551 2877 5.381174 TCAAAACTGAAATCATGAGCCTG 57.619 39.130 0.09 0.00 0.00 4.85
2599 3039 2.291741 CGCAAATAATCAGAAGGGAGGC 59.708 50.000 0.00 0.00 0.00 4.70
2629 3069 2.745281 CGCCATTTTCTCCCTCGTTTTA 59.255 45.455 0.00 0.00 0.00 1.52
2635 3075 2.930826 TATCCGCCATTTTCTCCCTC 57.069 50.000 0.00 0.00 0.00 4.30
2978 3420 5.515797 AGGATGTCATTGATCAATTGCAG 57.484 39.130 18.41 7.61 0.00 4.41
3076 3518 3.136626 AGCAACTCCTAGAAACCACTTGT 59.863 43.478 0.00 0.00 0.00 3.16
3105 3547 4.900652 TCCTTTAGTGGGTGTTACTGTGTA 59.099 41.667 0.00 0.00 0.00 2.90
3112 3554 7.023171 ACATTATGTCCTTTAGTGGGTGTTA 57.977 36.000 0.00 0.00 0.00 2.41
3181 3624 6.223852 TCAGGAAATGTCACTCTGAACTTAC 58.776 40.000 0.00 0.00 32.36 2.34
3514 3959 4.931214 CGTGTTAACGCTTTAGACAAGAG 58.069 43.478 16.62 0.00 43.98 2.85
3547 3992 6.441924 AGATCTAAGTTTGATTCTGGGTCTGA 59.558 38.462 0.00 0.00 0.00 3.27
3549 3994 6.214412 ACAGATCTAAGTTTGATTCTGGGTCT 59.786 38.462 19.80 5.62 0.00 3.85
3558 4003 7.918076 TCACCCTTAACAGATCTAAGTTTGAT 58.082 34.615 3.97 0.00 0.00 2.57
3566 4011 6.253758 TCAGTCTTCACCCTTAACAGATCTA 58.746 40.000 0.00 0.00 0.00 1.98
3629 4074 8.383175 ACTTCATTTTCTTCCATAAGGTGACTA 58.617 33.333 0.00 0.00 42.68 2.59
3767 4212 3.548770 AGCACATCACCAATGACCTATG 58.451 45.455 0.00 0.00 37.79 2.23
3892 4337 2.700722 TACATCCAGGCGCATGTTTA 57.299 45.000 21.79 6.37 34.92 2.01
3903 4348 9.836076 CAGACATATATTTTGCATTACATCCAG 57.164 33.333 0.00 0.00 0.00 3.86
4368 4815 3.432749 GCCTTCTCTGCAGGTGATCATAA 60.433 47.826 15.13 0.00 33.40 1.90
4614 5061 4.065789 AGTTACTGTGAACCTGCTTTAGC 58.934 43.478 0.00 0.00 42.50 3.09
4749 5199 5.065731 GTGAATGTTGATCCTTCATCCTCAC 59.934 44.000 0.00 1.60 34.33 3.51
5186 5636 0.041535 TGAATGCCAGCCCCTGAAAT 59.958 50.000 0.00 0.00 32.44 2.17
5634 6085 3.058293 GGTGAGTTCATGAAAACGATGCA 60.058 43.478 10.35 0.00 34.27 3.96
5640 6091 5.499139 TGAAGTGGTGAGTTCATGAAAAC 57.501 39.130 10.35 8.96 36.73 2.43
5744 6196 5.361857 AGCCAACTCAATCAATTATTGGAGG 59.638 40.000 5.02 0.00 44.42 4.30
5931 6403 7.443272 CAGTAATGATATCACAAGATGAGGCAA 59.557 37.037 7.78 0.00 41.91 4.52
6036 6510 1.967319 TCCTGTCAAGAAAGTGCCAC 58.033 50.000 0.00 0.00 0.00 5.01
6307 6793 5.162794 GCACATGAATGTATGCTCACAAAA 58.837 37.500 0.00 0.00 39.39 2.44
6315 6801 5.577554 TGTCATTTTGCACATGAATGTATGC 59.422 36.000 8.96 0.00 39.39 3.14
6447 7026 9.017669 GCAGAGATAACATGAACATTTGAAATC 57.982 33.333 0.00 0.00 0.00 2.17
6475 7054 2.030805 GGGCACTTGTCTTACAAAGCAG 60.031 50.000 14.73 0.00 39.48 4.24
6554 7153 8.942338 TTCCAATTATAGCACTGTAGTTGTAG 57.058 34.615 8.23 0.00 0.00 2.74
6767 7728 8.450578 AAATGTTGTTCTCACTTCTCACAATA 57.549 30.769 0.00 0.00 30.41 1.90
6771 7732 5.296780 TGGAAATGTTGTTCTCACTTCTCAC 59.703 40.000 0.00 0.00 0.00 3.51
6772 7733 5.296780 GTGGAAATGTTGTTCTCACTTCTCA 59.703 40.000 0.00 0.00 31.46 3.27
6773 7734 5.529060 AGTGGAAATGTTGTTCTCACTTCTC 59.471 40.000 0.00 0.00 36.48 2.87
6774 7735 5.440610 AGTGGAAATGTTGTTCTCACTTCT 58.559 37.500 0.00 0.00 36.48 2.85
6775 7736 5.757850 AGTGGAAATGTTGTTCTCACTTC 57.242 39.130 0.00 0.00 36.48 3.01
6776 7737 6.530019 AAAGTGGAAATGTTGTTCTCACTT 57.470 33.333 12.21 12.21 43.34 3.16
6777 7738 6.828785 AGTAAAGTGGAAATGTTGTTCTCACT 59.171 34.615 0.00 0.00 39.05 3.41
6857 7820 5.324409 AGCCAAATGGAAGAGTATGTGAAA 58.676 37.500 2.98 0.00 37.39 2.69
7127 8601 5.539048 AGTTACTGAGACAACAAATAGCGT 58.461 37.500 0.00 0.00 0.00 5.07
7384 8881 7.601073 TCAGTTCATGTCTCATACAATCAAC 57.399 36.000 0.00 0.00 42.70 3.18
7664 9579 7.048629 TCAAAGTCATTGCATAAAAGGTCAA 57.951 32.000 0.00 0.00 38.98 3.18
7722 9637 2.064762 GCGGCACAATCTCTAGCATAG 58.935 52.381 0.00 0.00 41.04 2.23
7726 9641 1.153369 TGGCGGCACAATCTCTAGC 60.153 57.895 7.97 0.00 0.00 3.42
7739 9654 0.461870 TGATCCGAAGAATGTGGCGG 60.462 55.000 0.00 0.00 44.83 6.13
7767 9714 0.681887 TGCAGTCAGGCCCATGATTG 60.682 55.000 11.78 11.78 39.27 2.67
7769 9716 0.040058 TTTGCAGTCAGGCCCATGAT 59.960 50.000 0.00 0.00 0.00 2.45
7912 9863 2.167487 TCTTTGCCCAACACTTCCAAAC 59.833 45.455 0.00 0.00 0.00 2.93
7916 9867 2.238521 TGATCTTTGCCCAACACTTCC 58.761 47.619 0.00 0.00 0.00 3.46
7922 10116 1.114627 GGGGATGATCTTTGCCCAAC 58.885 55.000 17.17 0.00 43.85 3.77
8104 10324 3.551846 CTCAGGTAAGAGGAGAGGAGAC 58.448 54.545 0.00 0.00 31.94 3.36
8114 10350 5.543507 ACAGATTATGCCTCAGGTAAGAG 57.456 43.478 0.00 0.00 35.39 2.85
8115 10351 5.957771 AACAGATTATGCCTCAGGTAAGA 57.042 39.130 0.00 0.00 0.00 2.10
8116 10352 7.275920 AGTTAACAGATTATGCCTCAGGTAAG 58.724 38.462 8.61 0.00 0.00 2.34
8117 10353 7.195374 AGTTAACAGATTATGCCTCAGGTAA 57.805 36.000 8.61 0.00 0.00 2.85
8293 10554 0.757935 ATCCATGGCATTGGTCAGGC 60.758 55.000 6.96 0.00 38.01 4.85
8300 10562 3.162666 AGGAGCATTATCCATGGCATTG 58.837 45.455 6.96 5.38 42.26 2.82
8337 10599 0.830444 GGAAAACCCCCTTTCGCCTT 60.830 55.000 0.00 0.00 36.37 4.35
8341 10603 0.898326 CCCAGGAAAACCCCCTTTCG 60.898 60.000 0.00 0.00 36.37 3.46
8350 10650 0.961753 CCAGCACTTCCCAGGAAAAC 59.038 55.000 0.00 0.00 33.34 2.43
8433 11094 1.525995 ACAAGCCTGTTCGGTGGTG 60.526 57.895 0.00 0.00 28.57 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.