Multiple sequence alignment - TraesCS7B01G405000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G405000 chr7B 100.000 2612 0 0 1 2612 673222516 673219905 0.000000e+00 4824.0
1 TraesCS7B01G405000 chr7B 83.957 829 92 25 687 1492 672861194 672860384 0.000000e+00 756.0
2 TraesCS7B01G405000 chr7B 79.583 960 130 36 680 1613 672780280 672779361 6.140000e-176 627.0
3 TraesCS7B01G405000 chr7D 91.525 885 42 11 816 1683 595669193 595668325 0.000000e+00 1188.0
4 TraesCS7B01G405000 chr7D 92.298 805 39 8 1 788 595669991 595669193 0.000000e+00 1122.0
5 TraesCS7B01G405000 chr7D 84.487 896 67 34 1779 2612 595668304 595667419 0.000000e+00 819.0
6 TraesCS7B01G405000 chr7D 83.525 868 98 31 641 1485 595587407 595586562 0.000000e+00 769.0
7 TraesCS7B01G405000 chr7D 82.583 666 78 18 982 1613 595514270 595513609 1.060000e-153 553.0
8 TraesCS7B01G405000 chr7D 95.238 42 2 0 1561 1602 595581411 595581370 1.680000e-07 67.6
9 TraesCS7B01G405000 chr7A 90.743 713 55 9 816 1527 688666089 688665387 0.000000e+00 941.0
10 TraesCS7B01G405000 chr7A 80.889 1057 129 38 646 1683 688652789 688651787 0.000000e+00 765.0
11 TraesCS7B01G405000 chr7A 83.607 854 68 28 1805 2598 688665218 688664377 0.000000e+00 736.0
12 TraesCS7B01G405000 chr7A 87.442 645 64 8 982 1613 688360438 688359798 0.000000e+00 726.0
13 TraesCS7B01G405000 chr7A 83.206 786 81 26 720 1485 688462962 688462208 0.000000e+00 673.0
14 TraesCS7B01G405000 chr7A 88.844 493 44 5 2 484 688666849 688666358 1.730000e-166 595.0
15 TraesCS7B01G405000 chr7A 90.146 274 13 6 524 788 688666357 688666089 6.920000e-91 344.0
16 TraesCS7B01G405000 chr7A 85.612 139 10 4 1555 1683 688665392 688665254 1.260000e-28 137.0
17 TraesCS7B01G405000 chr7A 95.455 44 2 0 1561 1604 688459632 688459589 1.300000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G405000 chr7B 673219905 673222516 2611 True 4824.00 4824 100.000000 1 2612 1 chr7B.!!$R3 2611
1 TraesCS7B01G405000 chr7B 672860384 672861194 810 True 756.00 756 83.957000 687 1492 1 chr7B.!!$R2 805
2 TraesCS7B01G405000 chr7B 672779361 672780280 919 True 627.00 627 79.583000 680 1613 1 chr7B.!!$R1 933
3 TraesCS7B01G405000 chr7D 595667419 595669991 2572 True 1043.00 1188 89.436667 1 2612 3 chr7D.!!$R4 2611
4 TraesCS7B01G405000 chr7D 595586562 595587407 845 True 769.00 769 83.525000 641 1485 1 chr7D.!!$R3 844
5 TraesCS7B01G405000 chr7D 595513609 595514270 661 True 553.00 553 82.583000 982 1613 1 chr7D.!!$R1 631
6 TraesCS7B01G405000 chr7A 688651787 688652789 1002 True 765.00 765 80.889000 646 1683 1 chr7A.!!$R2 1037
7 TraesCS7B01G405000 chr7A 688359798 688360438 640 True 726.00 726 87.442000 982 1613 1 chr7A.!!$R1 631
8 TraesCS7B01G405000 chr7A 688664377 688666849 2472 True 550.60 941 87.790400 2 2598 5 chr7A.!!$R4 2596
9 TraesCS7B01G405000 chr7A 688459589 688462962 3373 True 372.15 673 89.330500 720 1604 2 chr7A.!!$R3 884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.253044 CCATTCCCTCCACATCGTGT 59.747 55.0 0.0 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 4632 0.040336 GTCACTGCGACGAACAGAGA 60.04 55.0 9.12 4.4 38.55 3.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.457346 CTTGCTGTGAAGGATGGTCC 58.543 55.000 0.00 0.00 36.58 4.46
77 78 0.253044 CCATTCCCTCCACATCGTGT 59.747 55.000 0.00 0.00 0.00 4.49
79 80 2.483714 CCATTCCCTCCACATCGTGTAG 60.484 54.545 0.00 0.00 0.00 2.74
100 101 2.906389 GAGGGCTTGAAAAATTCCCCTT 59.094 45.455 6.81 0.00 38.59 3.95
159 170 5.128663 GTGCTGAAATTACCCCCATAATTGT 59.871 40.000 0.00 0.00 35.42 2.71
225 236 1.153369 GCCTCGCTGCACTATGGAA 60.153 57.895 0.00 0.00 0.00 3.53
262 273 2.482142 CGGTCATAGAAAGGAGAGCCAC 60.482 54.545 0.00 0.00 36.29 5.01
309 320 5.866335 TTAACCACCTTGCACTATAAACG 57.134 39.130 0.00 0.00 0.00 3.60
313 324 3.078837 CACCTTGCACTATAAACGGGTT 58.921 45.455 0.00 0.00 0.00 4.11
340 351 1.064825 GGAAGTTCTCCCTCCAACCA 58.935 55.000 2.25 0.00 38.44 3.67
348 359 0.696143 TCCCTCCAACCACACCTTCA 60.696 55.000 0.00 0.00 0.00 3.02
371 382 4.655440 TCGTGTCAAAATAACATGTCGG 57.345 40.909 0.00 0.00 35.57 4.79
421 432 8.995220 CATGAAAATTTGAGATGAAATTGGTGT 58.005 29.630 0.00 0.00 36.01 4.16
532 543 2.889462 GCATGAGCTCACCATGGTTGG 61.889 57.143 20.97 12.04 42.77 3.77
544 555 1.619827 CATGGTTGGGCACACAATCTT 59.380 47.619 0.00 0.00 32.71 2.40
556 567 4.357142 CACACAATCTTGAGGCAATATGC 58.643 43.478 0.00 0.00 44.08 3.14
598 610 6.205464 CGCCTTAATCAATGGTAACTCATCAT 59.795 38.462 0.00 0.00 37.61 2.45
612 624 6.760440 AACTCATCATCCATGTCCTCTATT 57.240 37.500 0.00 0.00 33.66 1.73
771 797 7.566658 TTTCCCCATTGGTCTTTTGATATTT 57.433 32.000 1.20 0.00 34.77 1.40
795 828 6.653020 TCTTGGCATCACAAATAGACAGTAT 58.347 36.000 0.00 0.00 0.00 2.12
805 838 8.544622 TCACAAATAGACAGTATTCCCATGTTA 58.455 33.333 0.00 0.00 0.00 2.41
814 847 7.116075 ACAGTATTCCCATGTTATGCAAGTAA 58.884 34.615 0.00 0.00 0.00 2.24
815 848 7.613801 ACAGTATTCCCATGTTATGCAAGTAAA 59.386 33.333 0.00 0.00 0.00 2.01
889 938 1.422402 TCCACACCACCCCTAAGAAAC 59.578 52.381 0.00 0.00 0.00 2.78
931 981 3.399440 AAACAGAGAGAACAGAGCAGG 57.601 47.619 0.00 0.00 0.00 4.85
943 998 2.027377 ACAGAGCAGGAAACTCATCAGG 60.027 50.000 0.00 0.00 40.21 3.86
947 1002 1.883638 GCAGGAAACTCATCAGGTGCA 60.884 52.381 0.00 0.00 40.21 4.57
948 1003 2.507484 CAGGAAACTCATCAGGTGCAA 58.493 47.619 0.00 0.00 40.21 4.08
979 1040 4.803426 GCTCTGCTACGCCGTGCT 62.803 66.667 0.00 0.00 31.62 4.40
1020 1086 2.930562 AGGCCCGGAGCTGAGTTT 60.931 61.111 0.73 0.00 43.05 2.66
1455 1545 0.601558 CGGAGAAGAAGGTGGACGAA 59.398 55.000 0.00 0.00 0.00 3.85
1457 1547 1.619332 GGAGAAGAAGGTGGACGAACT 59.381 52.381 0.00 0.00 0.00 3.01
1636 4226 9.376075 GAAGACTGAAGACAATGAGATGATAAA 57.624 33.333 0.00 0.00 0.00 1.40
1686 4285 3.081061 TGGGAACAGATCAAATTCGTGG 58.919 45.455 0.00 0.00 35.01 4.94
1687 4286 3.244735 TGGGAACAGATCAAATTCGTGGA 60.245 43.478 0.00 0.00 35.01 4.02
1688 4287 3.947834 GGGAACAGATCAAATTCGTGGAT 59.052 43.478 0.00 0.00 0.00 3.41
1689 4288 4.201950 GGGAACAGATCAAATTCGTGGATG 60.202 45.833 0.00 0.00 0.00 3.51
1690 4289 4.396166 GGAACAGATCAAATTCGTGGATGT 59.604 41.667 0.00 0.00 0.00 3.06
1691 4290 5.447818 GGAACAGATCAAATTCGTGGATGTC 60.448 44.000 0.00 0.00 0.00 3.06
1692 4291 3.618594 ACAGATCAAATTCGTGGATGTCG 59.381 43.478 0.00 0.00 0.00 4.35
1693 4292 3.618594 CAGATCAAATTCGTGGATGTCGT 59.381 43.478 0.00 0.00 0.00 4.34
1694 4293 4.093408 CAGATCAAATTCGTGGATGTCGTT 59.907 41.667 0.00 0.00 0.00 3.85
1719 4318 0.813184 ATCAAATTCCACGGCTGCAG 59.187 50.000 10.11 10.11 0.00 4.41
1730 4329 1.378250 GGCTGCAGCATGAAGTCCT 60.378 57.895 37.63 0.00 41.90 3.85
1731 4330 0.107508 GGCTGCAGCATGAAGTCCTA 60.108 55.000 37.63 0.00 41.90 2.94
1732 4331 1.297664 GCTGCAGCATGAAGTCCTAG 58.702 55.000 33.36 0.00 46.37 3.02
1733 4332 1.134580 GCTGCAGCATGAAGTCCTAGA 60.135 52.381 33.36 0.00 46.37 2.43
1734 4333 2.548875 CTGCAGCATGAAGTCCTAGAC 58.451 52.381 0.00 0.00 36.83 2.59
1735 4334 1.208052 TGCAGCATGAAGTCCTAGACC 59.792 52.381 0.00 0.00 39.69 3.85
1736 4335 1.208052 GCAGCATGAAGTCCTAGACCA 59.792 52.381 0.00 0.00 39.69 4.02
1737 4336 2.741228 GCAGCATGAAGTCCTAGACCAG 60.741 54.545 0.00 0.00 39.69 4.00
1738 4337 1.484240 AGCATGAAGTCCTAGACCAGC 59.516 52.381 0.00 0.00 32.18 4.85
1739 4338 1.804372 GCATGAAGTCCTAGACCAGCG 60.804 57.143 0.00 0.00 32.18 5.18
1740 4339 1.115467 ATGAAGTCCTAGACCAGCGG 58.885 55.000 0.00 0.00 32.18 5.52
1741 4340 1.142097 GAAGTCCTAGACCAGCGGC 59.858 63.158 0.00 0.00 32.18 6.53
1742 4341 2.615262 GAAGTCCTAGACCAGCGGCG 62.615 65.000 0.51 0.51 32.18 6.46
1743 4342 4.208686 GTCCTAGACCAGCGGCGG 62.209 72.222 9.78 8.89 0.00 6.13
1746 4345 4.880537 CTAGACCAGCGGCGGCAG 62.881 72.222 19.21 10.49 43.41 4.85
1763 4362 4.838486 GCTCCACGAGCGACGGAG 62.838 72.222 20.70 20.70 45.85 4.63
1770 4369 4.539881 GAGCGACGGAGCGAGGAC 62.540 72.222 0.00 0.00 43.00 3.85
1868 4467 1.901464 GGCCGGCAAGTTTCAGGAA 60.901 57.895 30.85 0.00 0.00 3.36
1869 4468 1.250840 GGCCGGCAAGTTTCAGGAAT 61.251 55.000 30.85 0.00 0.00 3.01
1870 4469 0.171231 GCCGGCAAGTTTCAGGAATC 59.829 55.000 24.80 0.00 0.00 2.52
1871 4470 1.533625 CCGGCAAGTTTCAGGAATCA 58.466 50.000 0.00 0.00 0.00 2.57
1872 4471 1.470098 CCGGCAAGTTTCAGGAATCAG 59.530 52.381 0.00 0.00 0.00 2.90
1873 4472 1.470098 CGGCAAGTTTCAGGAATCAGG 59.530 52.381 0.00 0.00 0.00 3.86
1874 4473 2.795329 GGCAAGTTTCAGGAATCAGGA 58.205 47.619 0.00 0.00 0.00 3.86
1879 4478 0.035439 TTTCAGGAATCAGGACCGCC 60.035 55.000 0.00 0.00 0.00 6.13
1964 4594 2.677979 GCGCCGACAAGGAGGAAAC 61.678 63.158 0.00 0.00 45.00 2.78
1968 4598 1.542547 GCCGACAAGGAGGAAACAGAA 60.543 52.381 0.00 0.00 45.00 3.02
1981 4611 2.056906 AACAGAAGAAGCTGGCCCGT 62.057 55.000 0.00 0.00 40.20 5.28
1983 4613 2.217038 AGAAGAAGCTGGCCCGTCA 61.217 57.895 0.00 0.00 0.00 4.35
1989 4619 3.075005 GCTGGCCCGTCAGAGGTA 61.075 66.667 0.00 0.00 36.93 3.08
2005 4635 3.138798 TAGCGACGGTGGCCTCTC 61.139 66.667 11.66 0.00 0.00 3.20
2006 4636 3.640257 TAGCGACGGTGGCCTCTCT 62.640 63.158 11.66 0.00 0.00 3.10
2007 4637 4.803426 GCGACGGTGGCCTCTCTG 62.803 72.222 3.32 2.19 0.00 3.35
2009 4639 2.932234 CGACGGTGGCCTCTCTGTT 61.932 63.158 3.32 0.00 0.00 3.16
2012 4642 2.932234 CGGTGGCCTCTCTGTTCGT 61.932 63.158 3.32 0.00 0.00 3.85
2134 4766 1.798813 GACCGTGACAAGATGACCAAC 59.201 52.381 0.00 0.00 0.00 3.77
2140 4772 0.478072 ACAAGATGACCAACAGGCCA 59.522 50.000 5.01 0.00 0.00 5.36
2141 4773 0.883833 CAAGATGACCAACAGGCCAC 59.116 55.000 5.01 0.00 0.00 5.01
2142 4774 0.251341 AAGATGACCAACAGGCCACC 60.251 55.000 5.01 0.00 0.00 4.61
2143 4775 2.034066 ATGACCAACAGGCCACCG 59.966 61.111 5.01 0.00 0.00 4.94
2144 4776 2.748058 GATGACCAACAGGCCACCGT 62.748 60.000 5.01 0.00 0.00 4.83
2146 4778 4.579384 ACCAACAGGCCACCGTGG 62.579 66.667 13.71 13.71 41.55 4.94
2180 4838 3.124636 GGACATTTAGTGCTGTAACACGG 59.875 47.826 0.00 0.00 45.45 4.94
2208 4872 3.688694 AGGTATTGGACGTGTTTGCTA 57.311 42.857 0.00 0.00 0.00 3.49
2244 4913 1.002134 CCGGGCATTCCTTCACTGT 60.002 57.895 0.00 0.00 0.00 3.55
2268 4937 7.030165 GTGGTTGTATCACCTCGATATATCAG 58.970 42.308 13.11 8.82 38.85 2.90
2283 4952 8.413229 TCGATATATCAGTTGAGTGAAATGTCA 58.587 33.333 13.11 0.00 31.37 3.58
2318 4988 2.103538 CAAGCATGATGGCGGTGC 59.896 61.111 0.00 0.00 39.27 5.01
2326 4996 3.356639 GATGGCGGTGCTCGTCTGA 62.357 63.158 6.25 0.00 44.97 3.27
2327 4997 2.835701 GATGGCGGTGCTCGTCTGAA 62.836 60.000 6.25 0.00 44.97 3.02
2430 5109 2.364324 GTGCACTAGATATTCCCCGTCA 59.636 50.000 10.32 0.00 0.00 4.35
2456 5135 1.650528 AGCTTCAAGGTAGTGGCTCT 58.349 50.000 0.00 0.00 0.00 4.09
2457 5136 1.552792 AGCTTCAAGGTAGTGGCTCTC 59.447 52.381 0.00 0.00 0.00 3.20
2495 5174 0.953727 TACAGTGTGACTAACGCCGT 59.046 50.000 5.88 0.00 40.37 5.68
2499 5178 0.932399 GTGTGACTAACGCCGTTGTT 59.068 50.000 13.65 0.00 32.84 2.83
2579 5258 7.710078 TGGTGATCCAAAGTGAGAAGATCTCA 61.710 42.308 5.98 5.98 44.75 3.27
2596 5275 5.837979 AGATCTCACAGATGTATTAGTGCCT 59.162 40.000 0.00 0.00 34.53 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 6.017109 CGATGTGGAGGGAATGGTAAATTTAG 60.017 42.308 0.00 0.00 0.00 1.85
77 78 3.336694 AGGGGAATTTTTCAAGCCCTCTA 59.663 43.478 0.00 0.00 34.98 2.43
79 80 2.540383 AGGGGAATTTTTCAAGCCCTC 58.460 47.619 0.00 0.00 34.98 4.30
100 101 1.270785 TGCTCACTCGCCATTCTGAAA 60.271 47.619 0.00 0.00 0.00 2.69
159 170 4.526262 CCTGGGTAATGGTTGAAATGAACA 59.474 41.667 0.00 0.00 0.00 3.18
243 254 3.895232 TGTGGCTCTCCTTTCTATGAC 57.105 47.619 0.00 0.00 0.00 3.06
262 273 7.880160 TTAATATCCTCAATTCCTGTGGTTG 57.120 36.000 0.00 0.00 39.36 3.77
298 309 5.299582 TGCTTTAAACCCGTTTATAGTGC 57.700 39.130 14.95 10.84 36.85 4.40
309 320 3.506455 GGAGAACTTCCTGCTTTAAACCC 59.494 47.826 0.00 0.00 43.16 4.11
313 324 3.009143 GGAGGGAGAACTTCCTGCTTTAA 59.991 47.826 12.48 0.00 45.98 1.52
348 359 5.180492 ACCGACATGTTATTTTGACACGAAT 59.820 36.000 0.00 0.00 0.00 3.34
371 382 6.148150 TGTTATAGACCGTGTCAATTTCCAAC 59.852 38.462 6.78 0.00 34.60 3.77
421 432 5.783360 TCCCTCTGTTTAGAATTGTGAGGTA 59.217 40.000 0.00 0.00 38.24 3.08
494 505 1.418637 TGCGTAAACCTTCTCCCAACT 59.581 47.619 0.00 0.00 0.00 3.16
532 543 0.961019 TTGCCTCAAGATTGTGTGCC 59.039 50.000 0.00 0.00 0.00 5.01
556 567 5.592104 AAGGCGTTATTTAAATTGGGAGG 57.408 39.130 5.91 0.00 0.00 4.30
558 569 8.294954 TGATTAAGGCGTTATTTAAATTGGGA 57.705 30.769 5.91 0.00 0.00 4.37
618 630 0.407139 ATCAGGGCTTTGGACAAGCT 59.593 50.000 6.53 0.00 42.62 3.74
771 797 4.910195 ACTGTCTATTTGTGATGCCAAGA 58.090 39.130 0.00 0.00 0.00 3.02
805 838 6.435164 ACTGGGGAGAAATATTTACTTGCAT 58.565 36.000 0.00 0.00 0.00 3.96
814 847 3.977326 GGAGGAGACTGGGGAGAAATATT 59.023 47.826 0.00 0.00 44.43 1.28
815 848 3.592865 GGAGGAGACTGGGGAGAAATAT 58.407 50.000 0.00 0.00 44.43 1.28
889 938 0.664761 CTCCTGTGTGTGCTTGTTGG 59.335 55.000 0.00 0.00 0.00 3.77
931 981 2.351157 GCACTTGCACCTGATGAGTTTC 60.351 50.000 0.00 0.00 41.59 2.78
947 1002 1.055040 AGAGCAGAGGAGTTGCACTT 58.945 50.000 0.00 0.00 43.92 3.16
948 1003 0.321021 CAGAGCAGAGGAGTTGCACT 59.679 55.000 0.00 0.00 43.92 4.40
979 1040 1.677518 GGTGTGTGTTGGTGTCTGTGA 60.678 52.381 0.00 0.00 0.00 3.58
1020 1086 3.899981 GCGGTGGCTCATGGTGACA 62.900 63.158 0.00 0.00 40.07 3.58
1140 1209 4.923942 ATGAGCCCCAGCATCGCG 62.924 66.667 0.00 0.00 43.56 5.87
1239 1308 4.689549 TTCTCCCCGTCGCCCTCA 62.690 66.667 0.00 0.00 0.00 3.86
1433 1523 1.553706 GTCCACCTTCTTCTCCGGTA 58.446 55.000 0.00 0.00 0.00 4.02
1455 1545 3.241530 TTCACCTCGCAGCCCAGT 61.242 61.111 0.00 0.00 0.00 4.00
1457 1547 3.240134 GAGTTCACCTCGCAGCCCA 62.240 63.158 0.00 0.00 0.00 5.36
1636 4226 2.032054 CGCGCACAATCAGATGGTTTAT 59.968 45.455 8.75 0.00 0.00 1.40
1640 4230 2.108514 CCGCGCACAATCAGATGGT 61.109 57.895 8.75 0.00 0.00 3.55
1641 4231 2.711311 CCGCGCACAATCAGATGG 59.289 61.111 8.75 0.00 0.00 3.51
1672 4271 3.861840 ACGACATCCACGAATTTGATCT 58.138 40.909 0.00 0.00 34.70 2.75
1673 4272 4.600012 AACGACATCCACGAATTTGATC 57.400 40.909 0.00 0.00 34.70 2.92
1674 4273 5.175859 AGTAACGACATCCACGAATTTGAT 58.824 37.500 0.00 0.00 34.70 2.57
1675 4274 4.562082 AGTAACGACATCCACGAATTTGA 58.438 39.130 0.00 0.00 34.70 2.69
1676 4275 4.201685 GGAGTAACGACATCCACGAATTTG 60.202 45.833 0.00 0.00 33.08 2.32
1677 4276 3.930848 GGAGTAACGACATCCACGAATTT 59.069 43.478 0.00 0.00 33.08 1.82
1678 4277 3.056393 TGGAGTAACGACATCCACGAATT 60.056 43.478 0.00 0.00 38.19 2.17
1679 4278 2.494471 TGGAGTAACGACATCCACGAAT 59.506 45.455 0.00 0.00 38.19 3.34
1680 4279 1.887854 TGGAGTAACGACATCCACGAA 59.112 47.619 0.00 0.00 38.19 3.85
1681 4280 1.536940 TGGAGTAACGACATCCACGA 58.463 50.000 0.00 0.00 38.19 4.35
1682 4281 2.159296 TGATGGAGTAACGACATCCACG 60.159 50.000 5.74 0.00 45.53 4.94
1683 4282 3.520290 TGATGGAGTAACGACATCCAC 57.480 47.619 5.74 2.68 45.53 4.02
1684 4283 4.545208 TTTGATGGAGTAACGACATCCA 57.455 40.909 0.00 0.00 46.69 3.41
1685 4284 5.007724 GGAATTTGATGGAGTAACGACATCC 59.992 44.000 0.00 0.00 40.10 3.51
1686 4285 5.584649 TGGAATTTGATGGAGTAACGACATC 59.415 40.000 0.00 0.00 40.96 3.06
1687 4286 5.354234 GTGGAATTTGATGGAGTAACGACAT 59.646 40.000 0.00 0.00 0.00 3.06
1688 4287 4.693566 GTGGAATTTGATGGAGTAACGACA 59.306 41.667 0.00 0.00 0.00 4.35
1689 4288 4.201685 CGTGGAATTTGATGGAGTAACGAC 60.202 45.833 0.00 0.00 0.00 4.34
1690 4289 3.930229 CGTGGAATTTGATGGAGTAACGA 59.070 43.478 0.00 0.00 0.00 3.85
1691 4290 3.063452 CCGTGGAATTTGATGGAGTAACG 59.937 47.826 0.00 0.00 0.00 3.18
1692 4291 3.181500 GCCGTGGAATTTGATGGAGTAAC 60.181 47.826 0.00 0.00 0.00 2.50
1693 4292 3.013921 GCCGTGGAATTTGATGGAGTAA 58.986 45.455 0.00 0.00 0.00 2.24
1694 4293 2.238646 AGCCGTGGAATTTGATGGAGTA 59.761 45.455 0.00 0.00 0.00 2.59
1719 4318 1.804372 CGCTGGTCTAGGACTTCATGC 60.804 57.143 0.00 0.00 32.47 4.06
1753 4352 4.539881 GTCCTCGCTCCGTCGCTC 62.540 72.222 0.00 0.00 0.00 5.03
1774 4373 2.254651 GACTATCCGGGTAGCGCG 59.745 66.667 22.08 0.00 39.48 6.86
1775 4374 2.254651 CGACTATCCGGGTAGCGC 59.745 66.667 22.08 12.91 0.00 5.92
1776 4375 2.254651 GCGACTATCCGGGTAGCG 59.745 66.667 22.08 23.83 0.00 4.26
1777 4376 2.254651 CGCGACTATCCGGGTAGC 59.745 66.667 22.08 12.55 37.65 3.58
1778 4377 2.952245 CCGCGACTATCCGGGTAG 59.048 66.667 20.59 20.59 40.79 3.18
1885 4484 1.450312 CATCCTTGTGGTCGAGCCC 60.450 63.158 12.85 0.00 36.04 5.19
1895 4494 2.579201 CGCGGTCCTCATCCTTGT 59.421 61.111 0.00 0.00 0.00 3.16
1964 4594 1.743252 GACGGGCCAGCTTCTTCTG 60.743 63.158 4.39 0.00 0.00 3.02
1968 4598 2.604686 TCTGACGGGCCAGCTTCT 60.605 61.111 4.39 0.00 34.28 2.85
1981 4611 2.044555 CCACCGTCGCTACCTCTGA 61.045 63.158 0.00 0.00 0.00 3.27
1983 4613 3.450115 GCCACCGTCGCTACCTCT 61.450 66.667 0.00 0.00 0.00 3.69
2002 4632 0.040336 GTCACTGCGACGAACAGAGA 60.040 55.000 9.12 4.40 38.55 3.10
2012 4642 1.008881 GTCGTCTGTGTCACTGCGA 60.009 57.895 18.20 18.20 0.00 5.10
2146 4778 3.891366 ACTAAATGTCCATTGGGCATAGC 59.109 43.478 22.62 0.00 32.78 2.97
2147 4779 4.261741 GCACTAAATGTCCATTGGGCATAG 60.262 45.833 22.62 18.61 32.78 2.23
2160 4818 3.735591 ACCGTGTTACAGCACTAAATGT 58.264 40.909 0.00 0.00 37.24 2.71
2187 4851 3.688694 AGCAAACACGTCCAATACCTA 57.311 42.857 0.00 0.00 0.00 3.08
2192 4856 3.574614 GCAAATAGCAAACACGTCCAAT 58.425 40.909 0.00 0.00 44.79 3.16
2244 4913 6.719829 ACTGATATATCGAGGTGATACAACCA 59.280 38.462 8.19 0.00 42.24 3.67
2268 4937 8.948853 TTTCGATAAATGACATTTCACTCAAC 57.051 30.769 16.57 0.00 33.38 3.18
2310 4980 3.573772 CTTCAGACGAGCACCGCCA 62.574 63.158 0.00 0.00 43.32 5.69
2318 4988 1.534175 GCCCACGATACTTCAGACGAG 60.534 57.143 0.00 0.00 0.00 4.18
2326 4996 2.104331 CGAGCGCCCACGATACTT 59.896 61.111 2.29 0.00 43.93 2.24
2327 4997 4.570663 GCGAGCGCCCACGATACT 62.571 66.667 19.99 0.00 43.93 2.12
2388 5067 1.207089 CACAAACCTCCTCCTGCGATA 59.793 52.381 0.00 0.00 0.00 2.92
2395 5074 1.150536 TGCACCACAAACCTCCTCC 59.849 57.895 0.00 0.00 0.00 4.30
2456 5135 0.836606 ACATCCACACCACACTGTGA 59.163 50.000 15.86 0.00 43.77 3.58
2457 5136 1.679139 AACATCCACACCACACTGTG 58.321 50.000 6.19 6.19 41.19 3.66
2495 5174 0.254462 TGGCCACTGTCACTCAACAA 59.746 50.000 0.00 0.00 0.00 2.83
2499 5178 1.545428 GGAATTGGCCACTGTCACTCA 60.545 52.381 3.88 0.00 0.00 3.41
2579 5258 6.992715 GGACATAAAGGCACTAATACATCTGT 59.007 38.462 0.00 0.00 38.49 3.41
2588 5267 3.767673 ACTCGAGGACATAAAGGCACTAA 59.232 43.478 18.41 0.00 38.49 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.