Multiple sequence alignment - TraesCS7B01G403400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G403400 chr7B 100.000 2831 0 0 1 2831 671265645 671262815 0.000000e+00 5228
1 TraesCS7B01G403400 chr7B 94.182 1822 91 11 742 2555 554184071 554182257 0.000000e+00 2763
2 TraesCS7B01G403400 chr7B 92.982 114 4 2 2722 2831 510543361 510543474 2.260000e-36 163
3 TraesCS7B01G403400 chr7B 93.519 108 6 1 2624 2730 138214441 138214548 2.920000e-35 159
4 TraesCS7B01G403400 chr7B 91.860 86 4 3 2519 2602 406682369 406682285 1.780000e-22 117
5 TraesCS7B01G403400 chr5B 95.245 2608 101 7 1 2589 67028367 67025764 0.000000e+00 4108
6 TraesCS7B01G403400 chr5B 95.109 2617 100 10 1 2597 75081117 75083725 0.000000e+00 4098
7 TraesCS7B01G403400 chr3B 94.809 2620 109 12 1 2601 151117119 151114508 0.000000e+00 4060
8 TraesCS7B01G403400 chr3B 94.567 2632 107 12 1 2604 154423029 154420406 0.000000e+00 4036
9 TraesCS7B01G403400 chr3B 94.440 2626 100 14 1 2600 10052125 10049520 0.000000e+00 3999
10 TraesCS7B01G403400 chr3B 94.286 1225 46 4 1 1202 204205946 204207169 0.000000e+00 1853
11 TraesCS7B01G403400 chr3B 93.519 108 6 1 2624 2730 190902128 190902021 2.920000e-35 159
12 TraesCS7B01G403400 chr3B 94.203 69 4 0 2531 2599 55708468 55708400 3.860000e-19 106
13 TraesCS7B01G403400 chr2B 94.423 2618 116 15 1 2599 480006164 480008770 0.000000e+00 3999
14 TraesCS7B01G403400 chr1B 93.731 2632 112 14 1 2600 630554829 630552219 0.000000e+00 3897
15 TraesCS7B01G403400 chr1B 92.920 113 5 3 2620 2730 522838795 522838684 8.120000e-36 161
16 TraesCS7B01G403400 chr1B 93.578 109 6 1 2623 2730 543464619 543464727 8.120000e-36 161
17 TraesCS7B01G403400 chr1B 92.857 84 3 3 2519 2600 232634836 232634754 4.950000e-23 119
18 TraesCS7B01G403400 chr6B 94.484 2121 86 11 3 2095 678840767 678842884 0.000000e+00 3240
19 TraesCS7B01G403400 chr1D 95.264 1816 74 6 742 2555 492938487 492940292 0.000000e+00 2867
20 TraesCS7B01G403400 chr1D 92.982 114 4 2 2722 2831 485950899 485951012 2.260000e-36 163
21 TraesCS7B01G403400 chr2A 94.241 1806 88 7 742 2545 191975093 191976884 0.000000e+00 2745
22 TraesCS7B01G403400 chr2A 93.805 113 3 2 2723 2831 7385684 7385796 1.740000e-37 167
23 TraesCS7B01G403400 chr3D 94.641 821 19 10 1 797 418384394 418383575 0.000000e+00 1249
24 TraesCS7B01G403400 chr3D 94.495 109 4 2 2620 2727 162518561 162518668 1.740000e-37 167
25 TraesCS7B01G403400 chr3D 94.340 106 4 2 2623 2727 450884458 450884562 8.120000e-36 161
26 TraesCS7B01G403400 chr4D 94.444 108 5 1 2624 2730 423909746 423909639 6.270000e-37 165
27 TraesCS7B01G403400 chr4D 92.105 114 5 1 2722 2831 498023003 498022890 1.050000e-34 158
28 TraesCS7B01G403400 chr7D 92.982 114 4 1 2722 2831 631636173 631636286 2.260000e-36 163
29 TraesCS7B01G403400 chr5A 92.982 114 4 1 2722 2831 116699688 116699575 2.260000e-36 163
30 TraesCS7B01G403400 chr4B 94.393 107 5 1 2622 2727 628302495 628302601 2.260000e-36 163
31 TraesCS7B01G403400 chr2D 92.982 114 4 1 2722 2831 449577794 449577907 2.260000e-36 163
32 TraesCS7B01G403400 chr7A 91.453 117 6 4 2616 2730 41424695 41424581 1.050000e-34 158
33 TraesCS7B01G403400 chr7A 92.105 114 5 3 2722 2831 631872960 631872847 1.050000e-34 158
34 TraesCS7B01G403400 chr6D 92.105 114 5 2 2722 2831 204017239 204017352 1.050000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G403400 chr7B 671262815 671265645 2830 True 5228 5228 100.000 1 2831 1 chr7B.!!$R3 2830
1 TraesCS7B01G403400 chr7B 554182257 554184071 1814 True 2763 2763 94.182 742 2555 1 chr7B.!!$R2 1813
2 TraesCS7B01G403400 chr5B 67025764 67028367 2603 True 4108 4108 95.245 1 2589 1 chr5B.!!$R1 2588
3 TraesCS7B01G403400 chr5B 75081117 75083725 2608 False 4098 4098 95.109 1 2597 1 chr5B.!!$F1 2596
4 TraesCS7B01G403400 chr3B 151114508 151117119 2611 True 4060 4060 94.809 1 2601 1 chr3B.!!$R3 2600
5 TraesCS7B01G403400 chr3B 154420406 154423029 2623 True 4036 4036 94.567 1 2604 1 chr3B.!!$R4 2603
6 TraesCS7B01G403400 chr3B 10049520 10052125 2605 True 3999 3999 94.440 1 2600 1 chr3B.!!$R1 2599
7 TraesCS7B01G403400 chr3B 204205946 204207169 1223 False 1853 1853 94.286 1 1202 1 chr3B.!!$F1 1201
8 TraesCS7B01G403400 chr2B 480006164 480008770 2606 False 3999 3999 94.423 1 2599 1 chr2B.!!$F1 2598
9 TraesCS7B01G403400 chr1B 630552219 630554829 2610 True 3897 3897 93.731 1 2600 1 chr1B.!!$R3 2599
10 TraesCS7B01G403400 chr6B 678840767 678842884 2117 False 3240 3240 94.484 3 2095 1 chr6B.!!$F1 2092
11 TraesCS7B01G403400 chr1D 492938487 492940292 1805 False 2867 2867 95.264 742 2555 1 chr1D.!!$F2 1813
12 TraesCS7B01G403400 chr2A 191975093 191976884 1791 False 2745 2745 94.241 742 2545 1 chr2A.!!$F2 1803
13 TraesCS7B01G403400 chr3D 418383575 418384394 819 True 1249 1249 94.641 1 797 1 chr3D.!!$R1 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.464916 TATCAGCGTAGAGTGCGGGA 60.465 55.0 0.0 0.0 37.44 5.14 F
1547 1597 0.249322 CCGGACGGACACACCATATC 60.249 60.0 4.4 0.0 38.90 1.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1693 1743 0.461961 GAGCAGACATAGCCGTCCTT 59.538 55.0 0.0 0.0 36.52 3.36 R
2559 2616 0.108520 GTTGGTGAATAGTCCGCCGA 60.109 55.0 0.0 0.0 37.01 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.906073 TCGAATCAAGCATCATAGAGTTCA 58.094 37.500 0.00 0.00 0.00 3.18
101 102 0.464916 TATCAGCGTAGAGTGCGGGA 60.465 55.000 0.00 0.00 37.44 5.14
563 580 9.764363 TTTGCTATTATAGGTCACTATTCACAG 57.236 33.333 1.12 0.00 40.35 3.66
824 867 3.144506 CAATAGAAAGATCAGCGGGCAT 58.855 45.455 0.00 0.00 0.00 4.40
862 905 1.368641 TCAATTGCTTGCGCGTATCT 58.631 45.000 8.43 0.00 39.65 1.98
884 927 4.982999 TGTGTTGCTTCTAGTAGATCGAC 58.017 43.478 0.00 6.97 0.00 4.20
1253 1297 0.391130 ACGAGCAACATACATGCCGT 60.391 50.000 0.00 8.48 44.91 5.68
1254 1298 0.301687 CGAGCAACATACATGCCGTC 59.698 55.000 0.00 0.00 44.91 4.79
1285 1329 3.916392 GACACTGACACCGCCGGAG 62.916 68.421 11.71 3.87 0.00 4.63
1547 1597 0.249322 CCGGACGGACACACCATATC 60.249 60.000 4.40 0.00 38.90 1.63
1693 1743 4.720902 CATGGGTCGGGCTGCACA 62.721 66.667 1.50 0.00 0.00 4.57
1778 1828 2.184322 GAAGATGGCCGACGAGCA 59.816 61.111 0.00 0.00 0.00 4.26
1994 2044 3.474570 GGCTCGTGAGGAGGGCAT 61.475 66.667 4.18 0.00 43.36 4.40
2036 2086 4.082665 TGGTACCGTGTACAAAAATCCA 57.917 40.909 7.57 1.63 0.00 3.41
2039 2089 6.236409 TGGTACCGTGTACAAAAATCCAATA 58.764 36.000 7.57 0.00 0.00 1.90
2322 2373 3.370061 GGAGACGAAAAATAACCGGTCAG 59.630 47.826 8.04 0.00 0.00 3.51
2589 2646 5.815581 ACTATTCACCAACTGCTCCATTAA 58.184 37.500 0.00 0.00 0.00 1.40
2604 2661 6.494835 TGCTCCATTAAGAGTAGAGATATGCA 59.505 38.462 0.00 0.00 36.20 3.96
2605 2662 7.035004 GCTCCATTAAGAGTAGAGATATGCAG 58.965 42.308 0.00 0.00 36.20 4.41
2606 2663 7.093988 GCTCCATTAAGAGTAGAGATATGCAGA 60.094 40.741 0.00 0.00 36.20 4.26
2607 2664 8.116651 TCCATTAAGAGTAGAGATATGCAGAC 57.883 38.462 0.00 0.00 0.00 3.51
2608 2665 7.725844 TCCATTAAGAGTAGAGATATGCAGACA 59.274 37.037 0.00 0.00 0.00 3.41
2609 2666 8.363390 CCATTAAGAGTAGAGATATGCAGACAA 58.637 37.037 0.00 0.00 0.00 3.18
2610 2667 9.190858 CATTAAGAGTAGAGATATGCAGACAAC 57.809 37.037 0.00 0.00 0.00 3.32
2611 2668 6.782082 AAGAGTAGAGATATGCAGACAACA 57.218 37.500 0.00 0.00 0.00 3.33
2612 2669 6.782082 AGAGTAGAGATATGCAGACAACAA 57.218 37.500 0.00 0.00 0.00 2.83
2613 2670 7.358770 AGAGTAGAGATATGCAGACAACAAT 57.641 36.000 0.00 0.00 0.00 2.71
2614 2671 7.208777 AGAGTAGAGATATGCAGACAACAATG 58.791 38.462 0.00 0.00 0.00 2.82
2615 2672 6.882656 AGTAGAGATATGCAGACAACAATGT 58.117 36.000 0.00 0.00 44.25 2.71
2616 2673 7.334090 AGTAGAGATATGCAGACAACAATGTT 58.666 34.615 0.00 0.00 40.74 2.71
2617 2674 7.826252 AGTAGAGATATGCAGACAACAATGTTT 59.174 33.333 0.00 0.00 40.74 2.83
2618 2675 9.098355 GTAGAGATATGCAGACAACAATGTTTA 57.902 33.333 0.00 0.00 40.74 2.01
2619 2676 8.565896 AGAGATATGCAGACAACAATGTTTAA 57.434 30.769 0.00 0.00 40.74 1.52
2620 2677 9.013229 AGAGATATGCAGACAACAATGTTTAAA 57.987 29.630 0.00 0.00 40.74 1.52
2621 2678 8.970691 AGATATGCAGACAACAATGTTTAAAC 57.029 30.769 11.54 11.54 40.74 2.01
2622 2679 8.575589 AGATATGCAGACAACAATGTTTAAACA 58.424 29.630 22.58 22.58 40.74 2.83
2637 2694 7.193377 TGTTTAAACATACTCCTTCCGTTTC 57.807 36.000 17.01 0.00 33.17 2.78
2638 2695 6.993902 TGTTTAAACATACTCCTTCCGTTTCT 59.006 34.615 17.01 0.00 33.17 2.52
2639 2696 8.149647 TGTTTAAACATACTCCTTCCGTTTCTA 58.850 33.333 17.01 0.00 33.17 2.10
2640 2697 8.992073 GTTTAAACATACTCCTTCCGTTTCTAA 58.008 33.333 13.51 0.00 32.42 2.10
2641 2698 9.558396 TTTAAACATACTCCTTCCGTTTCTAAA 57.442 29.630 0.00 0.00 32.42 1.85
2642 2699 9.729281 TTAAACATACTCCTTCCGTTTCTAAAT 57.271 29.630 0.00 0.00 32.42 1.40
2644 2701 8.713737 AACATACTCCTTCCGTTTCTAAATAC 57.286 34.615 0.00 0.00 0.00 1.89
2645 2702 7.844009 ACATACTCCTTCCGTTTCTAAATACA 58.156 34.615 0.00 0.00 0.00 2.29
2646 2703 8.316214 ACATACTCCTTCCGTTTCTAAATACAA 58.684 33.333 0.00 0.00 0.00 2.41
2647 2704 8.818057 CATACTCCTTCCGTTTCTAAATACAAG 58.182 37.037 0.00 0.00 0.00 3.16
2648 2705 6.766429 ACTCCTTCCGTTTCTAAATACAAGT 58.234 36.000 0.00 0.00 0.00 3.16
2649 2706 6.872547 ACTCCTTCCGTTTCTAAATACAAGTC 59.127 38.462 0.00 0.00 0.00 3.01
2650 2707 7.001099 TCCTTCCGTTTCTAAATACAAGTCT 57.999 36.000 0.00 0.00 0.00 3.24
2651 2708 7.447594 TCCTTCCGTTTCTAAATACAAGTCTT 58.552 34.615 0.00 0.00 0.00 3.01
2652 2709 7.935210 TCCTTCCGTTTCTAAATACAAGTCTTT 59.065 33.333 0.00 0.00 0.00 2.52
2653 2710 8.565416 CCTTCCGTTTCTAAATACAAGTCTTTT 58.435 33.333 0.00 0.00 0.00 2.27
2654 2711 9.946165 CTTCCGTTTCTAAATACAAGTCTTTTT 57.054 29.630 0.00 0.00 0.00 1.94
2669 2726 9.533253 ACAAGTCTTTTTAGACATTTCAAATGG 57.467 29.630 14.70 0.00 41.02 3.16
2670 2727 8.490355 CAAGTCTTTTTAGACATTTCAAATGGC 58.510 33.333 14.70 11.66 41.02 4.40
2671 2728 7.955918 AGTCTTTTTAGACATTTCAAATGGCT 58.044 30.769 22.35 22.35 41.04 4.75
2672 2729 9.077885 AGTCTTTTTAGACATTTCAAATGGCTA 57.922 29.630 20.19 20.19 38.54 3.93
2673 2730 9.129209 GTCTTTTTAGACATTTCAAATGGCTAC 57.871 33.333 23.23 11.24 39.20 3.58
2674 2731 8.855110 TCTTTTTAGACATTTCAAATGGCTACA 58.145 29.630 23.23 15.50 39.20 2.74
2675 2732 9.474920 CTTTTTAGACATTTCAAATGGCTACAA 57.525 29.630 23.23 20.06 39.20 2.41
2676 2733 8.810652 TTTTAGACATTTCAAATGGCTACAAC 57.189 30.769 23.23 2.47 39.20 3.32
2677 2734 7.517614 TTAGACATTTCAAATGGCTACAACA 57.482 32.000 23.23 7.97 39.20 3.33
2678 2735 6.594788 AGACATTTCAAATGGCTACAACAT 57.405 33.333 17.52 0.00 35.20 2.71
2679 2736 7.701539 AGACATTTCAAATGGCTACAACATA 57.298 32.000 17.52 0.00 35.20 2.29
2680 2737 7.538575 AGACATTTCAAATGGCTACAACATAC 58.461 34.615 17.52 0.00 35.20 2.39
2681 2738 6.321717 ACATTTCAAATGGCTACAACATACG 58.678 36.000 14.70 0.00 0.00 3.06
2682 2739 4.955925 TTCAAATGGCTACAACATACGG 57.044 40.909 0.00 0.00 0.00 4.02
2683 2740 4.209307 TCAAATGGCTACAACATACGGA 57.791 40.909 0.00 0.00 0.00 4.69
2684 2741 4.776349 TCAAATGGCTACAACATACGGAT 58.224 39.130 0.00 0.00 0.00 4.18
2685 2742 4.574421 TCAAATGGCTACAACATACGGATG 59.426 41.667 5.94 5.94 39.16 3.51
2687 2744 4.948341 ATGGCTACAACATACGGATGTA 57.052 40.909 15.10 0.00 45.93 2.29
2688 2745 4.948341 TGGCTACAACATACGGATGTAT 57.052 40.909 15.10 8.21 45.93 2.29
2703 2760 7.962964 ACGGATGTATGTGGACATATTTTAG 57.037 36.000 2.88 0.00 40.18 1.85
2704 2761 7.732025 ACGGATGTATGTGGACATATTTTAGA 58.268 34.615 2.88 0.00 40.18 2.10
2705 2762 7.872993 ACGGATGTATGTGGACATATTTTAGAG 59.127 37.037 2.88 0.00 40.18 2.43
2706 2763 7.872993 CGGATGTATGTGGACATATTTTAGAGT 59.127 37.037 2.88 0.00 40.18 3.24
2707 2764 8.993121 GGATGTATGTGGACATATTTTAGAGTG 58.007 37.037 2.88 0.00 40.18 3.51
2708 2765 9.547753 GATGTATGTGGACATATTTTAGAGTGT 57.452 33.333 2.88 0.00 40.18 3.55
2714 2771 9.817809 TGTGGACATATTTTAGAGTGTAGATTC 57.182 33.333 0.00 0.00 0.00 2.52
2715 2772 9.817809 GTGGACATATTTTAGAGTGTAGATTCA 57.182 33.333 0.00 0.00 0.00 2.57
2716 2773 9.817809 TGGACATATTTTAGAGTGTAGATTCAC 57.182 33.333 0.00 0.00 38.46 3.18
2726 2783 9.944376 TTAGAGTGTAGATTCACTTATTTTGCT 57.056 29.630 0.98 0.00 46.81 3.91
2727 2784 8.854614 AGAGTGTAGATTCACTTATTTTGCTT 57.145 30.769 0.98 0.00 46.81 3.91
2728 2785 8.940952 AGAGTGTAGATTCACTTATTTTGCTTC 58.059 33.333 0.98 0.00 46.81 3.86
2729 2786 7.743104 AGTGTAGATTCACTTATTTTGCTTCG 58.257 34.615 0.00 0.00 44.92 3.79
2730 2787 6.961554 GTGTAGATTCACTTATTTTGCTTCGG 59.038 38.462 0.00 0.00 35.68 4.30
2731 2788 5.567138 AGATTCACTTATTTTGCTTCGGG 57.433 39.130 0.00 0.00 0.00 5.14
2732 2789 5.253330 AGATTCACTTATTTTGCTTCGGGA 58.747 37.500 0.00 0.00 0.00 5.14
2733 2790 5.710099 AGATTCACTTATTTTGCTTCGGGAA 59.290 36.000 0.00 0.00 0.00 3.97
2734 2791 5.975693 TTCACTTATTTTGCTTCGGGAAT 57.024 34.783 0.00 0.00 0.00 3.01
2735 2792 5.975693 TCACTTATTTTGCTTCGGGAATT 57.024 34.783 0.00 0.00 0.00 2.17
2736 2793 5.708948 TCACTTATTTTGCTTCGGGAATTG 58.291 37.500 0.00 0.00 0.00 2.32
2737 2794 4.864247 CACTTATTTTGCTTCGGGAATTGG 59.136 41.667 0.00 0.00 0.00 3.16
2738 2795 4.081697 ACTTATTTTGCTTCGGGAATTGGG 60.082 41.667 0.00 0.00 0.00 4.12
2739 2796 1.710816 TTTTGCTTCGGGAATTGGGT 58.289 45.000 0.00 0.00 0.00 4.51
2740 2797 2.588464 TTTGCTTCGGGAATTGGGTA 57.412 45.000 0.00 0.00 0.00 3.69
2741 2798 2.818751 TTGCTTCGGGAATTGGGTAT 57.181 45.000 0.00 0.00 0.00 2.73
2742 2799 3.935818 TTGCTTCGGGAATTGGGTATA 57.064 42.857 0.00 0.00 0.00 1.47
2743 2800 4.447138 TTGCTTCGGGAATTGGGTATAT 57.553 40.909 0.00 0.00 0.00 0.86
2744 2801 4.015872 TGCTTCGGGAATTGGGTATATC 57.984 45.455 0.00 0.00 0.00 1.63
2745 2802 3.244770 TGCTTCGGGAATTGGGTATATCC 60.245 47.826 0.00 0.00 0.00 2.59
2759 2816 5.813080 GGTATATCCCAAACACAGTGTTC 57.187 43.478 19.41 3.63 40.14 3.18
2760 2817 4.638865 GGTATATCCCAAACACAGTGTTCC 59.361 45.833 19.41 9.04 40.14 3.62
2761 2818 4.657814 ATATCCCAAACACAGTGTTCCT 57.342 40.909 19.41 1.88 40.14 3.36
2762 2819 2.818751 TCCCAAACACAGTGTTCCTT 57.181 45.000 19.41 1.10 40.14 3.36
2763 2820 3.094484 TCCCAAACACAGTGTTCCTTT 57.906 42.857 19.41 0.71 40.14 3.11
2764 2821 2.757868 TCCCAAACACAGTGTTCCTTTG 59.242 45.455 19.41 13.21 40.14 2.77
2765 2822 2.159114 CCCAAACACAGTGTTCCTTTGG 60.159 50.000 19.41 20.50 40.14 3.28
2766 2823 2.495669 CCAAACACAGTGTTCCTTTGGT 59.504 45.455 19.41 0.00 40.14 3.67
2767 2824 3.510719 CAAACACAGTGTTCCTTTGGTG 58.489 45.455 19.41 8.35 40.14 4.17
2768 2825 2.507407 ACACAGTGTTCCTTTGGTGT 57.493 45.000 0.00 0.00 34.89 4.16
2769 2826 2.091541 ACACAGTGTTCCTTTGGTGTG 58.908 47.619 0.00 0.00 40.87 3.82
2770 2827 2.290641 ACACAGTGTTCCTTTGGTGTGA 60.291 45.455 0.00 0.00 38.88 3.58
2771 2828 2.951642 CACAGTGTTCCTTTGGTGTGAT 59.048 45.455 0.00 0.00 38.00 3.06
2772 2829 4.133820 CACAGTGTTCCTTTGGTGTGATA 58.866 43.478 0.00 0.00 38.00 2.15
2773 2830 4.578516 CACAGTGTTCCTTTGGTGTGATAA 59.421 41.667 0.00 0.00 38.00 1.75
2774 2831 4.578928 ACAGTGTTCCTTTGGTGTGATAAC 59.421 41.667 0.00 0.00 0.00 1.89
2775 2832 4.578516 CAGTGTTCCTTTGGTGTGATAACA 59.421 41.667 0.00 0.00 0.00 2.41
2776 2833 5.241506 CAGTGTTCCTTTGGTGTGATAACAT 59.758 40.000 0.00 0.00 0.00 2.71
2777 2834 5.473504 AGTGTTCCTTTGGTGTGATAACATC 59.526 40.000 0.00 0.00 0.00 3.06
2778 2835 4.454161 TGTTCCTTTGGTGTGATAACATCG 59.546 41.667 0.00 0.00 0.00 3.84
2779 2836 4.545208 TCCTTTGGTGTGATAACATCGA 57.455 40.909 0.00 0.00 0.00 3.59
2780 2837 5.097742 TCCTTTGGTGTGATAACATCGAT 57.902 39.130 0.00 0.00 0.00 3.59
2781 2838 4.875536 TCCTTTGGTGTGATAACATCGATG 59.124 41.667 23.68 23.68 0.00 3.84
2782 2839 4.496341 CCTTTGGTGTGATAACATCGATGC 60.496 45.833 25.11 9.44 0.00 3.91
2783 2840 3.541996 TGGTGTGATAACATCGATGCT 57.458 42.857 25.11 15.99 0.00 3.79
2784 2841 4.664150 TGGTGTGATAACATCGATGCTA 57.336 40.909 25.11 17.77 0.00 3.49
2785 2842 4.368315 TGGTGTGATAACATCGATGCTAC 58.632 43.478 25.11 15.93 0.00 3.58
2786 2843 4.142049 TGGTGTGATAACATCGATGCTACA 60.142 41.667 25.11 18.05 0.00 2.74
2787 2844 4.991056 GGTGTGATAACATCGATGCTACAT 59.009 41.667 25.11 12.55 0.00 2.29
2788 2845 6.156519 GGTGTGATAACATCGATGCTACATA 58.843 40.000 25.11 14.58 0.00 2.29
2789 2846 6.089551 GGTGTGATAACATCGATGCTACATAC 59.910 42.308 25.11 22.75 0.00 2.39
2790 2847 6.089551 GTGTGATAACATCGATGCTACATACC 59.910 42.308 25.11 7.35 0.00 2.73
2791 2848 6.015434 TGTGATAACATCGATGCTACATACCT 60.015 38.462 25.11 1.20 0.00 3.08
2792 2849 6.528423 GTGATAACATCGATGCTACATACCTC 59.472 42.308 25.11 10.85 0.00 3.85
2793 2850 6.434340 TGATAACATCGATGCTACATACCTCT 59.566 38.462 25.11 0.00 0.00 3.69
2794 2851 4.775058 ACATCGATGCTACATACCTCTC 57.225 45.455 25.11 0.00 0.00 3.20
2795 2852 4.402829 ACATCGATGCTACATACCTCTCT 58.597 43.478 25.11 0.00 0.00 3.10
2796 2853 4.217334 ACATCGATGCTACATACCTCTCTG 59.783 45.833 25.11 0.00 0.00 3.35
2797 2854 2.554462 TCGATGCTACATACCTCTCTGC 59.446 50.000 0.00 0.00 0.00 4.26
2798 2855 2.294512 CGATGCTACATACCTCTCTGCA 59.705 50.000 0.00 0.00 0.00 4.41
2799 2856 3.243535 CGATGCTACATACCTCTCTGCAA 60.244 47.826 0.00 0.00 32.66 4.08
2800 2857 4.697514 GATGCTACATACCTCTCTGCAAA 58.302 43.478 0.00 0.00 32.66 3.68
2801 2858 4.760530 TGCTACATACCTCTCTGCAAAT 57.239 40.909 0.00 0.00 0.00 2.32
2802 2859 4.697514 TGCTACATACCTCTCTGCAAATC 58.302 43.478 0.00 0.00 0.00 2.17
2803 2860 4.061596 GCTACATACCTCTCTGCAAATCC 58.938 47.826 0.00 0.00 0.00 3.01
2804 2861 3.185246 ACATACCTCTCTGCAAATCCG 57.815 47.619 0.00 0.00 0.00 4.18
2805 2862 2.158900 ACATACCTCTCTGCAAATCCGG 60.159 50.000 0.00 0.00 0.00 5.14
2806 2863 1.568504 TACCTCTCTGCAAATCCGGT 58.431 50.000 0.00 0.00 0.00 5.28
2807 2864 1.568504 ACCTCTCTGCAAATCCGGTA 58.431 50.000 0.00 0.00 0.00 4.02
2808 2865 2.119495 ACCTCTCTGCAAATCCGGTAT 58.881 47.619 0.00 0.00 0.00 2.73
2809 2866 2.505819 ACCTCTCTGCAAATCCGGTATT 59.494 45.455 0.00 0.00 0.00 1.89
2810 2867 3.134458 CCTCTCTGCAAATCCGGTATTC 58.866 50.000 0.00 0.00 0.00 1.75
2811 2868 3.134458 CTCTCTGCAAATCCGGTATTCC 58.866 50.000 0.00 0.00 0.00 3.01
2812 2869 2.503765 TCTCTGCAAATCCGGTATTCCA 59.496 45.455 0.00 0.00 0.00 3.53
2813 2870 3.136443 TCTCTGCAAATCCGGTATTCCAT 59.864 43.478 0.00 0.00 0.00 3.41
2814 2871 3.213506 TCTGCAAATCCGGTATTCCATG 58.786 45.455 0.00 0.00 0.00 3.66
2815 2872 1.680735 TGCAAATCCGGTATTCCATGC 59.319 47.619 0.00 7.88 0.00 4.06
2816 2873 1.000274 GCAAATCCGGTATTCCATGCC 60.000 52.381 0.00 0.00 0.00 4.40
2817 2874 1.613437 CAAATCCGGTATTCCATGCCC 59.387 52.381 0.00 0.00 0.00 5.36
2818 2875 0.250727 AATCCGGTATTCCATGCCCG 60.251 55.000 0.00 0.00 40.12 6.13
2819 2876 1.125093 ATCCGGTATTCCATGCCCGA 61.125 55.000 0.00 0.00 43.01 5.14
2820 2877 1.147376 CCGGTATTCCATGCCCGAA 59.853 57.895 0.00 0.00 43.01 4.30
2821 2878 0.250727 CCGGTATTCCATGCCCGAAT 60.251 55.000 0.00 4.76 43.01 3.34
2822 2879 0.874390 CGGTATTCCATGCCCGAATG 59.126 55.000 6.08 0.00 43.01 2.67
2823 2880 1.542328 CGGTATTCCATGCCCGAATGA 60.542 52.381 6.08 0.00 43.01 2.57
2824 2881 2.582052 GGTATTCCATGCCCGAATGAA 58.418 47.619 6.08 0.00 32.32 2.57
2825 2882 2.955660 GGTATTCCATGCCCGAATGAAA 59.044 45.455 6.08 0.00 32.32 2.69
2826 2883 3.243401 GGTATTCCATGCCCGAATGAAAC 60.243 47.826 6.08 0.00 32.32 2.78
2827 2884 1.916506 TTCCATGCCCGAATGAAACA 58.083 45.000 0.00 0.00 0.00 2.83
2828 2885 1.173043 TCCATGCCCGAATGAAACAC 58.827 50.000 0.00 0.00 0.00 3.32
2829 2886 0.887247 CCATGCCCGAATGAAACACA 59.113 50.000 0.00 0.00 0.00 3.72
2830 2887 1.477700 CCATGCCCGAATGAAACACAT 59.522 47.619 0.00 0.00 41.45 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.840635 GTGGAAATGCTACTCCTCCCT 59.159 52.381 0.00 0.00 32.51 4.20
101 102 5.235516 CAGGTATTTACGTTCTGTGTCCTT 58.764 41.667 0.00 0.00 0.00 3.36
242 243 4.257654 TTGAGGGAAACGCCGCCA 62.258 61.111 0.00 0.00 37.63 5.69
455 460 7.116233 CAGTGCAAAAGTAAGTCAAGTGTTTTT 59.884 33.333 0.00 0.00 0.00 1.94
862 905 4.457949 TGTCGATCTACTAGAAGCAACACA 59.542 41.667 0.00 0.00 0.00 3.72
884 927 2.671396 GCTAACCACGGTTGATGTAGTG 59.329 50.000 11.80 0.00 38.92 2.74
1253 1297 2.160205 CAGTGTCGTAGAAGAGGGTGA 58.840 52.381 0.00 0.00 39.69 4.02
1254 1298 2.095161 GTCAGTGTCGTAGAAGAGGGTG 60.095 54.545 0.00 0.00 39.69 4.61
1291 1335 1.833049 CTAGAACGGGAGGGCCGAT 60.833 63.158 0.00 0.00 33.83 4.18
1307 1351 1.227999 GCCACAAAGCAGTGCGTCTA 61.228 55.000 10.00 0.00 38.18 2.59
1396 1446 0.976641 ATCGCCTCAAAGGACACAGA 59.023 50.000 0.00 0.00 37.67 3.41
1547 1597 3.633094 CTGCTCCACGAGGACACGG 62.633 68.421 0.00 0.00 39.61 4.94
1588 1638 1.830587 TTGCAGCTCCTGGTGTCGAT 61.831 55.000 0.00 0.00 43.05 3.59
1693 1743 0.461961 GAGCAGACATAGCCGTCCTT 59.538 55.000 0.00 0.00 36.52 3.36
1749 1799 1.617018 CCATCTTCCACTCCGGCTGA 61.617 60.000 0.00 0.00 33.14 4.26
1994 2044 1.314534 TAACGCGTTCCTCCCATCGA 61.315 55.000 30.28 3.30 0.00 3.59
2260 2311 3.421844 GCTTCACCTTCCACATAAACCT 58.578 45.455 0.00 0.00 0.00 3.50
2272 2323 0.954452 CTGCCTTTTCGCTTCACCTT 59.046 50.000 0.00 0.00 0.00 3.50
2273 2324 0.890996 CCTGCCTTTTCGCTTCACCT 60.891 55.000 0.00 0.00 0.00 4.00
2349 2402 7.942990 TCTTCAAATACCAAAACCAAACGTAT 58.057 30.769 0.00 0.00 0.00 3.06
2545 2601 1.329292 CCGCCGATTATTTTTCGCTGA 59.671 47.619 0.00 0.00 35.31 4.26
2559 2616 0.108520 GTTGGTGAATAGTCCGCCGA 60.109 55.000 0.00 0.00 37.01 5.54
2589 2646 6.782082 TTGTTGTCTGCATATCTCTACTCT 57.218 37.500 0.00 0.00 0.00 3.24
2604 2661 8.691661 AGGAGTATGTTTAAACATTGTTGTCT 57.308 30.769 32.58 21.19 46.95 3.41
2605 2662 9.394477 GAAGGAGTATGTTTAAACATTGTTGTC 57.606 33.333 32.58 21.67 46.95 3.18
2606 2663 8.357402 GGAAGGAGTATGTTTAAACATTGTTGT 58.643 33.333 32.58 17.24 46.95 3.32
2607 2664 7.537306 CGGAAGGAGTATGTTTAAACATTGTTG 59.463 37.037 32.58 13.48 46.95 3.33
2608 2665 7.229907 ACGGAAGGAGTATGTTTAAACATTGTT 59.770 33.333 32.58 20.46 46.95 2.83
2609 2666 6.713450 ACGGAAGGAGTATGTTTAAACATTGT 59.287 34.615 32.58 22.07 46.95 2.71
2610 2667 7.141100 ACGGAAGGAGTATGTTTAAACATTG 57.859 36.000 32.58 16.19 46.95 2.82
2611 2668 7.754851 AACGGAAGGAGTATGTTTAAACATT 57.245 32.000 32.58 19.56 46.95 2.71
2613 2670 6.993902 AGAAACGGAAGGAGTATGTTTAAACA 59.006 34.615 22.58 22.58 44.06 2.83
2614 2671 7.430992 AGAAACGGAAGGAGTATGTTTAAAC 57.569 36.000 11.54 11.54 33.27 2.01
2615 2672 9.558396 TTTAGAAACGGAAGGAGTATGTTTAAA 57.442 29.630 0.00 0.00 33.27 1.52
2616 2673 9.729281 ATTTAGAAACGGAAGGAGTATGTTTAA 57.271 29.630 0.00 0.00 33.27 1.52
2618 2675 9.159364 GTATTTAGAAACGGAAGGAGTATGTTT 57.841 33.333 0.00 0.00 35.61 2.83
2619 2676 8.316214 TGTATTTAGAAACGGAAGGAGTATGTT 58.684 33.333 0.00 0.00 0.00 2.71
2620 2677 7.844009 TGTATTTAGAAACGGAAGGAGTATGT 58.156 34.615 0.00 0.00 0.00 2.29
2621 2678 8.712285 TTGTATTTAGAAACGGAAGGAGTATG 57.288 34.615 0.00 0.00 0.00 2.39
2622 2679 8.537858 ACTTGTATTTAGAAACGGAAGGAGTAT 58.462 33.333 0.00 0.00 0.00 2.12
2623 2680 7.899973 ACTTGTATTTAGAAACGGAAGGAGTA 58.100 34.615 0.00 0.00 0.00 2.59
2624 2681 6.766429 ACTTGTATTTAGAAACGGAAGGAGT 58.234 36.000 0.00 0.00 0.00 3.85
2625 2682 7.097834 AGACTTGTATTTAGAAACGGAAGGAG 58.902 38.462 0.00 0.00 0.00 3.69
2626 2683 7.001099 AGACTTGTATTTAGAAACGGAAGGA 57.999 36.000 0.00 0.00 0.00 3.36
2627 2684 7.668525 AAGACTTGTATTTAGAAACGGAAGG 57.331 36.000 0.00 0.00 0.00 3.46
2628 2685 9.946165 AAAAAGACTTGTATTTAGAAACGGAAG 57.054 29.630 0.00 0.00 0.00 3.46
2643 2700 9.533253 CCATTTGAAATGTCTAAAAAGACTTGT 57.467 29.630 15.93 0.00 39.41 3.16
2644 2701 8.490355 GCCATTTGAAATGTCTAAAAAGACTTG 58.510 33.333 15.93 0.00 39.41 3.16
2645 2702 8.424133 AGCCATTTGAAATGTCTAAAAAGACTT 58.576 29.630 15.93 0.00 39.41 3.01
2646 2703 7.955918 AGCCATTTGAAATGTCTAAAAAGACT 58.044 30.769 15.93 0.00 39.41 3.24
2647 2704 9.129209 GTAGCCATTTGAAATGTCTAAAAAGAC 57.871 33.333 15.93 0.16 39.15 3.01
2648 2705 8.855110 TGTAGCCATTTGAAATGTCTAAAAAGA 58.145 29.630 15.93 0.00 0.00 2.52
2649 2706 9.474920 TTGTAGCCATTTGAAATGTCTAAAAAG 57.525 29.630 15.93 0.50 0.00 2.27
2650 2707 9.255304 GTTGTAGCCATTTGAAATGTCTAAAAA 57.745 29.630 11.79 7.05 0.00 1.94
2651 2708 8.417106 TGTTGTAGCCATTTGAAATGTCTAAAA 58.583 29.630 15.93 11.45 0.00 1.52
2652 2709 7.946207 TGTTGTAGCCATTTGAAATGTCTAAA 58.054 30.769 15.93 6.00 0.00 1.85
2653 2710 7.517614 TGTTGTAGCCATTTGAAATGTCTAA 57.482 32.000 15.93 0.00 0.00 2.10
2654 2711 7.701539 ATGTTGTAGCCATTTGAAATGTCTA 57.298 32.000 15.93 10.48 0.00 2.59
2655 2712 6.594788 ATGTTGTAGCCATTTGAAATGTCT 57.405 33.333 15.93 11.47 0.00 3.41
2656 2713 6.468956 CGTATGTTGTAGCCATTTGAAATGTC 59.531 38.462 15.93 3.96 0.00 3.06
2657 2714 6.321717 CGTATGTTGTAGCCATTTGAAATGT 58.678 36.000 15.93 2.12 0.00 2.71
2658 2715 5.743398 CCGTATGTTGTAGCCATTTGAAATG 59.257 40.000 10.84 10.84 0.00 2.32
2659 2716 5.650266 TCCGTATGTTGTAGCCATTTGAAAT 59.350 36.000 0.00 0.00 0.00 2.17
2660 2717 5.004448 TCCGTATGTTGTAGCCATTTGAAA 58.996 37.500 0.00 0.00 0.00 2.69
2661 2718 4.580868 TCCGTATGTTGTAGCCATTTGAA 58.419 39.130 0.00 0.00 0.00 2.69
2662 2719 4.209307 TCCGTATGTTGTAGCCATTTGA 57.791 40.909 0.00 0.00 0.00 2.69
2663 2720 4.335315 ACATCCGTATGTTGTAGCCATTTG 59.665 41.667 0.00 0.00 44.07 2.32
2664 2721 4.523083 ACATCCGTATGTTGTAGCCATTT 58.477 39.130 0.00 0.00 44.07 2.32
2665 2722 4.150897 ACATCCGTATGTTGTAGCCATT 57.849 40.909 0.00 0.00 44.07 3.16
2666 2723 3.838244 ACATCCGTATGTTGTAGCCAT 57.162 42.857 0.00 0.00 44.07 4.40
2667 2724 4.627058 CATACATCCGTATGTTGTAGCCA 58.373 43.478 0.00 0.00 46.70 4.75
2677 2734 9.653287 CTAAAATATGTCCACATACATCCGTAT 57.347 33.333 1.42 0.00 41.15 3.06
2678 2735 8.862085 TCTAAAATATGTCCACATACATCCGTA 58.138 33.333 1.42 0.00 41.15 4.02
2679 2736 7.732025 TCTAAAATATGTCCACATACATCCGT 58.268 34.615 1.42 0.00 41.15 4.69
2680 2737 7.872993 ACTCTAAAATATGTCCACATACATCCG 59.127 37.037 1.42 0.00 41.15 4.18
2681 2738 8.993121 CACTCTAAAATATGTCCACATACATCC 58.007 37.037 1.42 0.00 41.15 3.51
2682 2739 9.547753 ACACTCTAAAATATGTCCACATACATC 57.452 33.333 1.42 0.00 41.15 3.06
2688 2745 9.817809 GAATCTACACTCTAAAATATGTCCACA 57.182 33.333 0.00 0.00 0.00 4.17
2689 2746 9.817809 TGAATCTACACTCTAAAATATGTCCAC 57.182 33.333 0.00 0.00 0.00 4.02
2690 2747 9.817809 GTGAATCTACACTCTAAAATATGTCCA 57.182 33.333 0.00 0.00 37.73 4.02
2705 2762 6.961554 CCGAAGCAAAATAAGTGAATCTACAC 59.038 38.462 0.00 0.00 40.60 2.90
2706 2763 6.093495 CCCGAAGCAAAATAAGTGAATCTACA 59.907 38.462 0.00 0.00 0.00 2.74
2707 2764 6.315393 TCCCGAAGCAAAATAAGTGAATCTAC 59.685 38.462 0.00 0.00 0.00 2.59
2708 2765 6.411376 TCCCGAAGCAAAATAAGTGAATCTA 58.589 36.000 0.00 0.00 0.00 1.98
2709 2766 5.253330 TCCCGAAGCAAAATAAGTGAATCT 58.747 37.500 0.00 0.00 0.00 2.40
2710 2767 5.560966 TCCCGAAGCAAAATAAGTGAATC 57.439 39.130 0.00 0.00 0.00 2.52
2711 2768 5.975693 TTCCCGAAGCAAAATAAGTGAAT 57.024 34.783 0.00 0.00 0.00 2.57
2712 2769 5.975693 ATTCCCGAAGCAAAATAAGTGAA 57.024 34.783 0.00 0.00 0.00 3.18
2713 2770 5.336372 CCAATTCCCGAAGCAAAATAAGTGA 60.336 40.000 0.00 0.00 0.00 3.41
2714 2771 4.864247 CCAATTCCCGAAGCAAAATAAGTG 59.136 41.667 0.00 0.00 0.00 3.16
2715 2772 4.081697 CCCAATTCCCGAAGCAAAATAAGT 60.082 41.667 0.00 0.00 0.00 2.24
2716 2773 4.081697 ACCCAATTCCCGAAGCAAAATAAG 60.082 41.667 0.00 0.00 0.00 1.73
2717 2774 3.835395 ACCCAATTCCCGAAGCAAAATAA 59.165 39.130 0.00 0.00 0.00 1.40
2718 2775 3.436243 ACCCAATTCCCGAAGCAAAATA 58.564 40.909 0.00 0.00 0.00 1.40
2719 2776 2.256306 ACCCAATTCCCGAAGCAAAAT 58.744 42.857 0.00 0.00 0.00 1.82
2720 2777 1.710816 ACCCAATTCCCGAAGCAAAA 58.289 45.000 0.00 0.00 0.00 2.44
2721 2778 2.588464 TACCCAATTCCCGAAGCAAA 57.412 45.000 0.00 0.00 0.00 3.68
2722 2779 2.818751 ATACCCAATTCCCGAAGCAA 57.181 45.000 0.00 0.00 0.00 3.91
2723 2780 3.244770 GGATATACCCAATTCCCGAAGCA 60.245 47.826 0.00 0.00 0.00 3.91
2724 2781 3.344515 GGATATACCCAATTCCCGAAGC 58.655 50.000 0.00 0.00 0.00 3.86
2736 2793 4.595986 AACACTGTGTTTGGGATATACCC 58.404 43.478 19.85 2.39 44.50 3.69
2737 2794 4.638865 GGAACACTGTGTTTGGGATATACC 59.361 45.833 25.35 15.14 41.28 2.73
2738 2795 5.497474 AGGAACACTGTGTTTGGGATATAC 58.503 41.667 25.35 10.44 41.28 1.47
2739 2796 5.772393 AGGAACACTGTGTTTGGGATATA 57.228 39.130 25.35 0.00 41.28 0.86
2740 2797 4.657814 AGGAACACTGTGTTTGGGATAT 57.342 40.909 25.35 2.36 41.28 1.63
2741 2798 4.447138 AAGGAACACTGTGTTTGGGATA 57.553 40.909 25.35 0.00 41.28 2.59
2742 2799 3.312736 AAGGAACACTGTGTTTGGGAT 57.687 42.857 25.35 3.89 41.28 3.85
2743 2800 2.757868 CAAAGGAACACTGTGTTTGGGA 59.242 45.455 25.35 0.00 41.28 4.37
2744 2801 2.159114 CCAAAGGAACACTGTGTTTGGG 60.159 50.000 25.35 14.03 41.28 4.12
2745 2802 3.163630 CCAAAGGAACACTGTGTTTGG 57.836 47.619 25.35 23.03 41.28 3.28
2746 2803 3.056891 ACACCAAAGGAACACTGTGTTTG 60.057 43.478 25.35 19.20 41.28 2.93
2747 2804 3.056891 CACACCAAAGGAACACTGTGTTT 60.057 43.478 25.35 9.64 41.28 2.83
2748 2805 2.491693 CACACCAAAGGAACACTGTGTT 59.508 45.455 24.93 24.93 44.37 3.32
2749 2806 2.091541 CACACCAAAGGAACACTGTGT 58.908 47.619 7.80 7.80 32.09 3.72
2750 2807 2.364632 TCACACCAAAGGAACACTGTG 58.635 47.619 6.19 6.19 33.94 3.66
2751 2808 2.799126 TCACACCAAAGGAACACTGT 57.201 45.000 0.00 0.00 0.00 3.55
2752 2809 4.578516 TGTTATCACACCAAAGGAACACTG 59.421 41.667 0.00 0.00 0.00 3.66
2753 2810 4.787551 TGTTATCACACCAAAGGAACACT 58.212 39.130 0.00 0.00 0.00 3.55
2754 2811 5.616866 CGATGTTATCACACCAAAGGAACAC 60.617 44.000 0.00 0.00 35.03 3.32
2755 2812 4.454161 CGATGTTATCACACCAAAGGAACA 59.546 41.667 0.00 0.00 35.03 3.18
2756 2813 4.693566 TCGATGTTATCACACCAAAGGAAC 59.306 41.667 0.00 0.00 35.03 3.62
2757 2814 4.900684 TCGATGTTATCACACCAAAGGAA 58.099 39.130 0.00 0.00 35.03 3.36
2758 2815 4.545208 TCGATGTTATCACACCAAAGGA 57.455 40.909 0.00 0.00 35.03 3.36
2759 2816 4.496341 GCATCGATGTTATCACACCAAAGG 60.496 45.833 25.47 0.00 35.03 3.11
2760 2817 4.333649 AGCATCGATGTTATCACACCAAAG 59.666 41.667 25.47 0.00 35.03 2.77
2761 2818 4.260985 AGCATCGATGTTATCACACCAAA 58.739 39.130 25.47 0.00 35.03 3.28
2762 2819 3.872696 AGCATCGATGTTATCACACCAA 58.127 40.909 25.47 0.00 35.03 3.67
2763 2820 3.541996 AGCATCGATGTTATCACACCA 57.458 42.857 25.47 0.00 35.03 4.17
2764 2821 4.368315 TGTAGCATCGATGTTATCACACC 58.632 43.478 25.47 11.76 35.03 4.16
2765 2822 6.089551 GGTATGTAGCATCGATGTTATCACAC 59.910 42.308 25.47 20.19 35.03 3.82
2766 2823 6.015434 AGGTATGTAGCATCGATGTTATCACA 60.015 38.462 25.47 20.09 37.31 3.58
2767 2824 6.390721 AGGTATGTAGCATCGATGTTATCAC 58.609 40.000 25.47 19.64 0.00 3.06
2768 2825 6.434340 AGAGGTATGTAGCATCGATGTTATCA 59.566 38.462 25.47 21.50 0.00 2.15
2769 2826 6.857956 AGAGGTATGTAGCATCGATGTTATC 58.142 40.000 25.47 16.26 0.00 1.75
2770 2827 6.661377 AGAGAGGTATGTAGCATCGATGTTAT 59.339 38.462 25.47 13.85 0.00 1.89
2771 2828 6.004574 AGAGAGGTATGTAGCATCGATGTTA 58.995 40.000 25.47 21.18 0.00 2.41
2772 2829 4.830046 AGAGAGGTATGTAGCATCGATGTT 59.170 41.667 25.47 22.27 0.00 2.71
2773 2830 4.217334 CAGAGAGGTATGTAGCATCGATGT 59.783 45.833 25.47 14.93 0.00 3.06
2774 2831 4.731720 CAGAGAGGTATGTAGCATCGATG 58.268 47.826 21.27 21.27 0.00 3.84
2775 2832 3.192422 GCAGAGAGGTATGTAGCATCGAT 59.808 47.826 0.00 0.00 0.00 3.59
2776 2833 2.554462 GCAGAGAGGTATGTAGCATCGA 59.446 50.000 0.00 0.00 0.00 3.59
2777 2834 2.294512 TGCAGAGAGGTATGTAGCATCG 59.705 50.000 0.00 0.00 0.00 3.84
2778 2835 4.327982 TTGCAGAGAGGTATGTAGCATC 57.672 45.455 0.00 0.00 0.00 3.91
2779 2836 4.760530 TTTGCAGAGAGGTATGTAGCAT 57.239 40.909 0.00 0.00 0.00 3.79
2780 2837 4.443457 GGATTTGCAGAGAGGTATGTAGCA 60.443 45.833 0.00 0.00 0.00 3.49
2781 2838 4.061596 GGATTTGCAGAGAGGTATGTAGC 58.938 47.826 0.00 0.00 0.00 3.58
2782 2839 4.302455 CGGATTTGCAGAGAGGTATGTAG 58.698 47.826 0.00 0.00 0.00 2.74
2783 2840 3.069586 CCGGATTTGCAGAGAGGTATGTA 59.930 47.826 0.00 0.00 0.00 2.29
2784 2841 2.158900 CCGGATTTGCAGAGAGGTATGT 60.159 50.000 0.00 0.00 0.00 2.29
2785 2842 2.158900 ACCGGATTTGCAGAGAGGTATG 60.159 50.000 9.46 0.00 0.00 2.39
2786 2843 2.119495 ACCGGATTTGCAGAGAGGTAT 58.881 47.619 9.46 0.00 0.00 2.73
2787 2844 1.568504 ACCGGATTTGCAGAGAGGTA 58.431 50.000 9.46 0.00 0.00 3.08
2788 2845 1.568504 TACCGGATTTGCAGAGAGGT 58.431 50.000 9.46 6.37 0.00 3.85
2789 2846 2.918712 ATACCGGATTTGCAGAGAGG 57.081 50.000 9.46 0.00 0.00 3.69
2790 2847 3.134458 GGAATACCGGATTTGCAGAGAG 58.866 50.000 9.46 0.00 0.00 3.20
2791 2848 2.503765 TGGAATACCGGATTTGCAGAGA 59.496 45.455 9.46 0.00 39.42 3.10
2792 2849 2.917933 TGGAATACCGGATTTGCAGAG 58.082 47.619 9.46 0.00 39.42 3.35
2793 2850 3.213506 CATGGAATACCGGATTTGCAGA 58.786 45.455 9.46 0.00 39.42 4.26
2794 2851 2.287788 GCATGGAATACCGGATTTGCAG 60.288 50.000 9.46 7.86 39.42 4.41
2795 2852 1.680735 GCATGGAATACCGGATTTGCA 59.319 47.619 9.46 13.21 39.42 4.08
2796 2853 1.000274 GGCATGGAATACCGGATTTGC 60.000 52.381 9.46 10.34 39.42 3.68
2797 2854 1.613437 GGGCATGGAATACCGGATTTG 59.387 52.381 9.46 0.69 39.42 2.32
2798 2855 1.817740 CGGGCATGGAATACCGGATTT 60.818 52.381 9.46 0.00 40.88 2.17
2799 2856 0.250727 CGGGCATGGAATACCGGATT 60.251 55.000 9.46 3.22 40.88 3.01
2800 2857 1.125093 TCGGGCATGGAATACCGGAT 61.125 55.000 9.46 0.00 43.60 4.18
2801 2858 1.338890 TTCGGGCATGGAATACCGGA 61.339 55.000 9.46 0.00 43.60 5.14
2802 2859 0.250727 ATTCGGGCATGGAATACCGG 60.251 55.000 0.00 0.00 43.60 5.28
2803 2860 0.874390 CATTCGGGCATGGAATACCG 59.126 55.000 0.00 0.00 44.44 4.02
2804 2861 2.270352 TCATTCGGGCATGGAATACC 57.730 50.000 0.00 0.00 33.03 2.73
2805 2862 3.380004 TGTTTCATTCGGGCATGGAATAC 59.620 43.478 0.00 0.00 33.03 1.89
2806 2863 3.380004 GTGTTTCATTCGGGCATGGAATA 59.620 43.478 0.00 0.00 33.03 1.75
2807 2864 2.166254 GTGTTTCATTCGGGCATGGAAT 59.834 45.455 0.00 0.00 34.56 3.01
2808 2865 1.543802 GTGTTTCATTCGGGCATGGAA 59.456 47.619 0.00 0.00 0.00 3.53
2809 2866 1.173043 GTGTTTCATTCGGGCATGGA 58.827 50.000 0.00 0.00 0.00 3.41
2810 2867 0.887247 TGTGTTTCATTCGGGCATGG 59.113 50.000 0.00 0.00 0.00 3.66
2811 2868 2.945447 ATGTGTTTCATTCGGGCATG 57.055 45.000 0.00 0.00 32.08 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.