Multiple sequence alignment - TraesCS7B01G402300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G402300 | chr7B | 100.000 | 3912 | 0 | 0 | 1 | 3912 | 668931624 | 668927713 | 0.000000e+00 | 7225.0 |
1 | TraesCS7B01G402300 | chr7B | 86.687 | 1307 | 89 | 33 | 462 | 1695 | 668906680 | 668907974 | 0.000000e+00 | 1371.0 |
2 | TraesCS7B01G402300 | chr7B | 84.934 | 1135 | 83 | 44 | 745 | 1809 | 669141716 | 669140600 | 0.000000e+00 | 1068.0 |
3 | TraesCS7B01G402300 | chr7B | 86.207 | 899 | 74 | 21 | 2264 | 3123 | 669140080 | 669139193 | 0.000000e+00 | 928.0 |
4 | TraesCS7B01G402300 | chr7B | 80.287 | 279 | 37 | 10 | 502 | 763 | 669175049 | 669174772 | 1.110000e-45 | 195.0 |
5 | TraesCS7B01G402300 | chr7B | 93.750 | 128 | 7 | 1 | 2063 | 2189 | 669140406 | 669140279 | 1.430000e-44 | 191.0 |
6 | TraesCS7B01G402300 | chr7B | 87.719 | 57 | 3 | 3 | 2087 | 2139 | 668908531 | 668908587 | 3.260000e-06 | 63.9 |
7 | TraesCS7B01G402300 | chr7D | 92.917 | 1186 | 55 | 8 | 1958 | 3123 | 592818441 | 592819617 | 0.000000e+00 | 1698.0 |
8 | TraesCS7B01G402300 | chr7D | 91.684 | 986 | 45 | 9 | 982 | 1958 | 592816335 | 592817292 | 0.000000e+00 | 1332.0 |
9 | TraesCS7B01G402300 | chr7D | 86.898 | 1038 | 81 | 29 | 1963 | 2974 | 592678584 | 592679592 | 0.000000e+00 | 1112.0 |
10 | TraesCS7B01G402300 | chr7D | 87.962 | 947 | 99 | 15 | 1 | 935 | 592815399 | 592816342 | 0.000000e+00 | 1103.0 |
11 | TraesCS7B01G402300 | chr7D | 86.567 | 871 | 56 | 20 | 811 | 1647 | 592677218 | 592678061 | 0.000000e+00 | 904.0 |
12 | TraesCS7B01G402300 | chr7D | 83.987 | 943 | 56 | 36 | 811 | 1695 | 592860385 | 592859480 | 0.000000e+00 | 817.0 |
13 | TraesCS7B01G402300 | chr7D | 85.515 | 718 | 69 | 18 | 983 | 1672 | 592632301 | 592633011 | 0.000000e+00 | 717.0 |
14 | TraesCS7B01G402300 | chr7D | 94.118 | 425 | 21 | 3 | 3488 | 3912 | 592819787 | 592820207 | 0.000000e+00 | 643.0 |
15 | TraesCS7B01G402300 | chr7D | 86.494 | 385 | 33 | 13 | 462 | 831 | 592860809 | 592860429 | 4.710000e-109 | 405.0 |
16 | TraesCS7B01G402300 | chr7D | 77.054 | 645 | 84 | 38 | 2281 | 2868 | 592858667 | 592858030 | 2.930000e-81 | 313.0 |
17 | TraesCS7B01G402300 | chr7D | 96.571 | 175 | 6 | 0 | 3221 | 3395 | 592819618 | 592819792 | 1.380000e-74 | 291.0 |
18 | TraesCS7B01G402300 | chr7D | 80.399 | 301 | 35 | 12 | 476 | 753 | 592675547 | 592675846 | 1.420000e-49 | 207.0 |
19 | TraesCS7B01G402300 | chr7D | 87.069 | 116 | 10 | 5 | 1694 | 1807 | 592678426 | 592678538 | 4.100000e-25 | 126.0 |
20 | TraesCS7B01G402300 | chr7A | 86.167 | 1453 | 110 | 40 | 1687 | 3060 | 685213430 | 685214870 | 0.000000e+00 | 1485.0 |
21 | TraesCS7B01G402300 | chr7A | 91.180 | 907 | 45 | 16 | 804 | 1688 | 685212487 | 685213380 | 0.000000e+00 | 1199.0 |
22 | TraesCS7B01G402300 | chr7A | 89.290 | 831 | 46 | 21 | 838 | 1647 | 685090000 | 685090808 | 0.000000e+00 | 1002.0 |
23 | TraesCS7B01G402300 | chr7A | 84.598 | 896 | 67 | 30 | 817 | 1650 | 685230879 | 685229993 | 0.000000e+00 | 824.0 |
24 | TraesCS7B01G402300 | chr7A | 82.081 | 865 | 97 | 25 | 838 | 1671 | 684292405 | 684293242 | 0.000000e+00 | 686.0 |
25 | TraesCS7B01G402300 | chr7A | 84.895 | 523 | 39 | 16 | 1899 | 2416 | 685094858 | 685095345 | 3.510000e-135 | 492.0 |
26 | TraesCS7B01G402300 | chr7A | 78.193 | 830 | 104 | 32 | 2280 | 3070 | 684296585 | 684297376 | 3.560000e-125 | 459.0 |
27 | TraesCS7B01G402300 | chr7A | 82.885 | 520 | 49 | 12 | 2457 | 2937 | 685095344 | 685095862 | 7.770000e-117 | 431.0 |
28 | TraesCS7B01G402300 | chr7A | 87.778 | 360 | 32 | 9 | 446 | 796 | 685212157 | 685212513 | 1.010000e-110 | 411.0 |
29 | TraesCS7B01G402300 | chr7A | 76.516 | 643 | 85 | 34 | 2281 | 2864 | 685228845 | 685228210 | 1.380000e-74 | 291.0 |
30 | TraesCS7B01G402300 | chr7A | 83.860 | 285 | 33 | 5 | 1756 | 2033 | 684293389 | 684293667 | 3.880000e-65 | 259.0 |
31 | TraesCS7B01G402300 | chr7A | 83.815 | 173 | 11 | 2 | 1694 | 1859 | 685094685 | 685094847 | 8.760000e-32 | 148.0 |
32 | TraesCS7B01G402300 | chr7A | 77.193 | 171 | 20 | 11 | 2028 | 2190 | 684296427 | 684296586 | 9.010000e-12 | 82.4 |
33 | TraesCS7B01G402300 | chr7A | 88.000 | 50 | 4 | 2 | 2092 | 2139 | 685229096 | 685229047 | 1.520000e-04 | 58.4 |
34 | TraesCS7B01G402300 | chr3B | 84.706 | 85 | 11 | 2 | 3607 | 3690 | 418332732 | 418332649 | 2.500000e-12 | 84.2 |
35 | TraesCS7B01G402300 | chr2A | 81.319 | 91 | 15 | 2 | 3124 | 3212 | 20562738 | 20562828 | 5.420000e-09 | 73.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G402300 | chr7B | 668927713 | 668931624 | 3911 | True | 7225.000000 | 7225 | 100.000000 | 1 | 3912 | 1 | chr7B.!!$R1 | 3911 |
1 | TraesCS7B01G402300 | chr7B | 669139193 | 669141716 | 2523 | True | 729.000000 | 1068 | 88.297000 | 745 | 3123 | 3 | chr7B.!!$R3 | 2378 |
2 | TraesCS7B01G402300 | chr7B | 668906680 | 668908587 | 1907 | False | 717.450000 | 1371 | 87.203000 | 462 | 2139 | 2 | chr7B.!!$F1 | 1677 |
3 | TraesCS7B01G402300 | chr7D | 592815399 | 592820207 | 4808 | False | 1013.400000 | 1698 | 92.650400 | 1 | 3912 | 5 | chr7D.!!$F3 | 3911 |
4 | TraesCS7B01G402300 | chr7D | 592632301 | 592633011 | 710 | False | 717.000000 | 717 | 85.515000 | 983 | 1672 | 1 | chr7D.!!$F1 | 689 |
5 | TraesCS7B01G402300 | chr7D | 592675547 | 592679592 | 4045 | False | 587.250000 | 1112 | 85.233250 | 476 | 2974 | 4 | chr7D.!!$F2 | 2498 |
6 | TraesCS7B01G402300 | chr7D | 592858030 | 592860809 | 2779 | True | 511.666667 | 817 | 82.511667 | 462 | 2868 | 3 | chr7D.!!$R1 | 2406 |
7 | TraesCS7B01G402300 | chr7A | 685212157 | 685214870 | 2713 | False | 1031.666667 | 1485 | 88.375000 | 446 | 3060 | 3 | chr7A.!!$F3 | 2614 |
8 | TraesCS7B01G402300 | chr7A | 685090000 | 685095862 | 5862 | False | 518.250000 | 1002 | 85.221250 | 838 | 2937 | 4 | chr7A.!!$F2 | 2099 |
9 | TraesCS7B01G402300 | chr7A | 685228210 | 685230879 | 2669 | True | 391.133333 | 824 | 83.038000 | 817 | 2864 | 3 | chr7A.!!$R1 | 2047 |
10 | TraesCS7B01G402300 | chr7A | 684292405 | 684297376 | 4971 | False | 371.600000 | 686 | 80.331750 | 838 | 3070 | 4 | chr7A.!!$F1 | 2232 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
492 | 493 | 0.251297 | TTGGACACATGGGGCTCAAG | 60.251 | 55.000 | 0.0 | 0.0 | 0.00 | 3.02 | F |
976 | 2405 | 0.718343 | CGGCTTTCTCTTCTTGAGCG | 59.282 | 55.000 | 0.0 | 0.0 | 42.38 | 5.03 | F |
1797 | 7174 | 1.329292 | CGCTCTGTTTTTGGTTCACGA | 59.671 | 47.619 | 0.0 | 0.0 | 0.00 | 4.35 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1662 | 3169 | 0.543749 | GAGTTGATGGAGAGTGGGGG | 59.456 | 60.0 | 0.00 | 0.0 | 0.00 | 5.40 | R |
2852 | 12594 | 0.375803 | GCGTTGTCGTTGTTCTGGTT | 59.624 | 50.0 | 0.00 | 0.0 | 39.49 | 3.67 | R |
3123 | 12940 | 0.037326 | AGCGAATGCCTGTTTCGAGA | 60.037 | 50.0 | 9.74 | 0.0 | 46.73 | 4.04 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
25 | 26 | 2.513897 | CCGGATCCGAAACCAGGC | 60.514 | 66.667 | 35.42 | 0.00 | 42.83 | 4.85 |
26 | 27 | 2.584608 | CGGATCCGAAACCAGGCT | 59.415 | 61.111 | 30.62 | 0.00 | 42.83 | 4.58 |
28 | 29 | 1.908483 | GGATCCGAAACCAGGCTCT | 59.092 | 57.895 | 0.00 | 0.00 | 0.00 | 4.09 |
36 | 37 | 1.062488 | AAACCAGGCTCTGACCCACT | 61.062 | 55.000 | 4.00 | 0.00 | 32.44 | 4.00 |
39 | 40 | 1.757306 | CAGGCTCTGACCCACTTGT | 59.243 | 57.895 | 0.00 | 0.00 | 32.44 | 3.16 |
69 | 70 | 3.190878 | GCTTCTTGCCCATCACGG | 58.809 | 61.111 | 0.00 | 0.00 | 35.15 | 4.94 |
84 | 85 | 4.323477 | CGGCAACCGGTCCTGGAA | 62.323 | 66.667 | 8.04 | 0.00 | 44.15 | 3.53 |
108 | 109 | 1.669115 | CTGGTGTGCGAAGGAGGTG | 60.669 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
113 | 114 | 2.525629 | TGCGAAGGAGGTGGGACA | 60.526 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
114 | 115 | 2.266055 | GCGAAGGAGGTGGGACAG | 59.734 | 66.667 | 0.00 | 0.00 | 41.80 | 3.51 |
137 | 138 | 1.418264 | GAGGAGGAGGATAGGGTTTGC | 59.582 | 57.143 | 0.00 | 0.00 | 0.00 | 3.68 |
141 | 142 | 1.847088 | AGGAGGATAGGGTTTGCTTCC | 59.153 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
145 | 146 | 2.048312 | GATAGGGTTTGCTTCCGCGC | 62.048 | 60.000 | 0.00 | 0.00 | 39.65 | 6.86 |
146 | 147 | 2.536997 | ATAGGGTTTGCTTCCGCGCT | 62.537 | 55.000 | 5.56 | 0.00 | 39.65 | 5.92 |
161 | 162 | 1.567504 | GCGCTCGTCTGGCTTTAATA | 58.432 | 50.000 | 0.00 | 0.00 | 0.00 | 0.98 |
162 | 163 | 1.523095 | GCGCTCGTCTGGCTTTAATAG | 59.477 | 52.381 | 0.00 | 0.00 | 0.00 | 1.73 |
188 | 189 | 2.218603 | GAAGGGTTGTCGAAGCTTCAA | 58.781 | 47.619 | 25.47 | 10.86 | 0.00 | 2.69 |
191 | 192 | 2.814336 | AGGGTTGTCGAAGCTTCAATTC | 59.186 | 45.455 | 25.47 | 12.46 | 0.00 | 2.17 |
192 | 193 | 2.814336 | GGGTTGTCGAAGCTTCAATTCT | 59.186 | 45.455 | 25.47 | 0.00 | 0.00 | 2.40 |
215 | 216 | 1.378124 | GAGTAGGCTTCTCGGTCGCT | 61.378 | 60.000 | 5.34 | 0.00 | 0.00 | 4.93 |
219 | 220 | 3.482783 | GCTTCTCGGTCGCTGCAC | 61.483 | 66.667 | 0.00 | 0.00 | 0.00 | 4.57 |
220 | 221 | 2.259818 | CTTCTCGGTCGCTGCACT | 59.740 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
223 | 224 | 2.749110 | TTCTCGGTCGCTGCACTGAC | 62.749 | 60.000 | 0.00 | 5.23 | 0.00 | 3.51 |
229 | 230 | 1.227118 | TCGCTGCACTGACGTGAAA | 60.227 | 52.632 | 0.00 | 0.00 | 43.97 | 2.69 |
230 | 231 | 1.083401 | CGCTGCACTGACGTGAAAC | 60.083 | 57.895 | 0.00 | 0.00 | 43.97 | 2.78 |
231 | 232 | 1.761244 | CGCTGCACTGACGTGAAACA | 61.761 | 55.000 | 0.00 | 0.00 | 43.97 | 2.83 |
248 | 249 | 0.326595 | ACACGTATTGGTGGATGGCA | 59.673 | 50.000 | 0.00 | 0.00 | 42.23 | 4.92 |
250 | 251 | 1.334556 | CACGTATTGGTGGATGGCATG | 59.665 | 52.381 | 3.81 | 0.00 | 34.27 | 4.06 |
288 | 289 | 2.234300 | ACGAAGTTTTCCAGAGCGAA | 57.766 | 45.000 | 0.00 | 0.00 | 37.78 | 4.70 |
297 | 298 | 2.310233 | CCAGAGCGAACACACACGG | 61.310 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
304 | 305 | 1.802337 | CGAACACACACGGGAGAGGA | 61.802 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
311 | 312 | 1.070134 | CACACGGGAGAGGAGTTTTGA | 59.930 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
319 | 320 | 4.445019 | GGGAGAGGAGTTTTGAGTGAGTTT | 60.445 | 45.833 | 0.00 | 0.00 | 0.00 | 2.66 |
325 | 326 | 2.097466 | AGTTTTGAGTGAGTTTGGTGCG | 59.903 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
327 | 328 | 1.295792 | TTGAGTGAGTTTGGTGCGTC | 58.704 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
334 | 335 | 2.355363 | TTTGGTGCGTCGGAGTCG | 60.355 | 61.111 | 0.00 | 0.00 | 42.81 | 4.18 |
352 | 353 | 2.551270 | GTTGCGGCAGACGTTCAG | 59.449 | 61.111 | 1.67 | 0.00 | 46.52 | 3.02 |
358 | 359 | 3.555428 | GCAGACGTTCAGACTGGC | 58.445 | 61.111 | 1.81 | 0.00 | 41.73 | 4.85 |
359 | 360 | 2.029844 | GCAGACGTTCAGACTGGCC | 61.030 | 63.158 | 1.81 | 0.00 | 41.73 | 5.36 |
360 | 361 | 1.374758 | CAGACGTTCAGACTGGCCC | 60.375 | 63.158 | 0.00 | 0.00 | 38.63 | 5.80 |
375 | 376 | 0.808755 | GGCCCGGACAATGTTTGTAG | 59.191 | 55.000 | 0.73 | 0.00 | 45.52 | 2.74 |
381 | 382 | 1.127951 | GGACAATGTTTGTAGCCGTCG | 59.872 | 52.381 | 0.00 | 0.00 | 45.52 | 5.12 |
436 | 437 | 4.136796 | CCAGACAGTTGAGGTTGATTTGA | 58.863 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
440 | 441 | 5.471456 | AGACAGTTGAGGTTGATTTGATGAC | 59.529 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
444 | 445 | 5.593909 | AGTTGAGGTTGATTTGATGACACAA | 59.406 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
455 | 456 | 3.213506 | TGATGACACAAGTTGGAGTTGG | 58.786 | 45.455 | 7.96 | 0.00 | 32.93 | 3.77 |
459 | 460 | 0.670162 | CACAAGTTGGAGTTGGCCTG | 59.330 | 55.000 | 3.32 | 0.00 | 32.93 | 4.85 |
468 | 469 | 1.517242 | GAGTTGGCCTGAGAACACAG | 58.483 | 55.000 | 3.32 | 0.00 | 37.61 | 3.66 |
469 | 470 | 1.070758 | GAGTTGGCCTGAGAACACAGA | 59.929 | 52.381 | 3.32 | 0.00 | 39.94 | 3.41 |
471 | 472 | 2.092429 | AGTTGGCCTGAGAACACAGAAA | 60.092 | 45.455 | 3.32 | 0.00 | 39.94 | 2.52 |
483 | 484 | 4.336433 | AGAACACAGAAAGTTGGACACATG | 59.664 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
492 | 493 | 0.251297 | TTGGACACATGGGGCTCAAG | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
541 | 544 | 8.867097 | AGCCAGAATCATATTTAGATTTTGCAT | 58.133 | 29.630 | 0.00 | 0.00 | 36.69 | 3.96 |
562 | 569 | 2.111756 | GCACAAGAAAAACAGTGCGAG | 58.888 | 47.619 | 0.00 | 0.00 | 46.35 | 5.03 |
572 | 596 | 7.797819 | AGAAAAACAGTGCGAGATAAGTAAAG | 58.202 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
606 | 634 | 3.008813 | AGTGTCCATGCATGTCTTCTCTT | 59.991 | 43.478 | 24.58 | 0.70 | 0.00 | 2.85 |
672 | 703 | 1.615392 | GCACCAAAACAGCAAGGAGAT | 59.385 | 47.619 | 0.00 | 0.00 | 0.00 | 2.75 |
797 | 2108 | 1.847737 | TCCCTCCTCCACTCTCTCTAC | 59.152 | 57.143 | 0.00 | 0.00 | 0.00 | 2.59 |
798 | 2109 | 1.566703 | CCCTCCTCCACTCTCTCTACA | 59.433 | 57.143 | 0.00 | 0.00 | 0.00 | 2.74 |
799 | 2110 | 2.650322 | CCTCCTCCACTCTCTCTACAC | 58.350 | 57.143 | 0.00 | 0.00 | 0.00 | 2.90 |
830 | 2204 | 4.230502 | ACCCTCTCAATCTCTTCTCTCTCT | 59.769 | 45.833 | 0.00 | 0.00 | 0.00 | 3.10 |
913 | 2334 | 3.634448 | ACTGATTCATACAGCTAGCGAGT | 59.366 | 43.478 | 17.79 | 17.79 | 38.74 | 4.18 |
914 | 2335 | 3.969899 | TGATTCATACAGCTAGCGAGTG | 58.030 | 45.455 | 21.32 | 12.44 | 0.00 | 3.51 |
915 | 2336 | 3.632145 | TGATTCATACAGCTAGCGAGTGA | 59.368 | 43.478 | 21.32 | 15.56 | 0.00 | 3.41 |
916 | 2337 | 3.699779 | TTCATACAGCTAGCGAGTGAG | 57.300 | 47.619 | 21.32 | 14.72 | 0.00 | 3.51 |
917 | 2338 | 1.335182 | TCATACAGCTAGCGAGTGAGC | 59.665 | 52.381 | 21.32 | 0.00 | 39.08 | 4.26 |
953 | 2382 | 1.894756 | ACGCCTCCTAGCTAGCTCG | 60.895 | 63.158 | 23.26 | 19.42 | 0.00 | 5.03 |
976 | 2405 | 0.718343 | CGGCTTTCTCTTCTTGAGCG | 59.282 | 55.000 | 0.00 | 0.00 | 42.38 | 5.03 |
1153 | 2626 | 2.922950 | AACTTCGACTACGCGGCCA | 61.923 | 57.895 | 12.47 | 0.00 | 39.58 | 5.36 |
1285 | 2773 | 2.592574 | TGCAGATGCCGCCTATGC | 60.593 | 61.111 | 8.17 | 8.17 | 41.18 | 3.14 |
1288 | 2776 | 3.958860 | AGATGCCGCCTATGCCCC | 61.959 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
1289 | 2777 | 4.269523 | GATGCCGCCTATGCCCCA | 62.270 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
1290 | 2778 | 4.586235 | ATGCCGCCTATGCCCCAC | 62.586 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
1347 | 2835 | 3.371097 | GATGGTGAAGCGCGAGGGA | 62.371 | 63.158 | 12.10 | 0.00 | 0.00 | 4.20 |
1526 | 3023 | 1.462238 | AGGTGGAGGACTGCAAGGT | 60.462 | 57.895 | 0.00 | 0.00 | 39.30 | 3.50 |
1647 | 3144 | 1.677966 | CCAGCAATGCAGCAGGTCT | 60.678 | 57.895 | 8.35 | 0.00 | 36.52 | 3.85 |
1662 | 3169 | 2.852075 | TCTGACCCCACACCCCAC | 60.852 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
1797 | 7174 | 1.329292 | CGCTCTGTTTTTGGTTCACGA | 59.671 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
1940 | 7404 | 2.281276 | GCCGTTTTCCCGTCCTGT | 60.281 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
2065 | 11503 | 2.500714 | CCTGTGGCAGGCTTTTGCA | 61.501 | 57.895 | 1.93 | 0.00 | 45.13 | 4.08 |
2208 | 11729 | 7.558435 | AATTTTGTTGAGTAGTACGTACGAG | 57.442 | 36.000 | 24.41 | 0.00 | 36.66 | 4.18 |
2214 | 11735 | 7.635423 | TGTTGAGTAGTACGTACGAGTTAAAA | 58.365 | 34.615 | 24.41 | 12.46 | 36.66 | 1.52 |
2242 | 11781 | 2.355209 | GGTGCTCAAGGTTAGCTAGCTT | 60.355 | 50.000 | 24.88 | 7.25 | 45.15 | 3.74 |
2244 | 11783 | 4.116238 | GTGCTCAAGGTTAGCTAGCTTAG | 58.884 | 47.826 | 24.88 | 10.05 | 42.49 | 2.18 |
2245 | 11784 | 3.769844 | TGCTCAAGGTTAGCTAGCTTAGT | 59.230 | 43.478 | 24.88 | 0.00 | 42.49 | 2.24 |
2246 | 11785 | 4.223032 | TGCTCAAGGTTAGCTAGCTTAGTT | 59.777 | 41.667 | 24.88 | 7.49 | 42.49 | 2.24 |
2483 | 12158 | 1.531149 | CAACAGTAAGCCGACACCTTG | 59.469 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
2533 | 12220 | 5.237048 | TGCGATTGATCATCATTTATCGGA | 58.763 | 37.500 | 20.77 | 17.25 | 36.37 | 4.55 |
2619 | 12315 | 2.816958 | CACCAGCGCGATCAGCTT | 60.817 | 61.111 | 12.10 | 0.00 | 44.06 | 3.74 |
2852 | 12594 | 2.342279 | CAAACGGCGAGGTCTCCA | 59.658 | 61.111 | 16.62 | 0.00 | 0.00 | 3.86 |
2987 | 12776 | 5.648092 | AGAACACCACATTAGATTGTAAGCC | 59.352 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3013 | 12802 | 3.543099 | GTGTTTTGTTTTCACCGGTTACG | 59.457 | 43.478 | 2.97 | 0.00 | 40.55 | 3.18 |
3065 | 12866 | 5.293560 | GGGCTAAACAGCAACAAAACATTA | 58.706 | 37.500 | 0.00 | 0.00 | 36.33 | 1.90 |
3075 | 12876 | 9.638239 | ACAGCAACAAAACATTATACTAATTGG | 57.362 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
3114 | 12931 | 5.012561 | AGTGGACTTTGAGATAGTTTCAGCT | 59.987 | 40.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3123 | 12940 | 7.661536 | TGAGATAGTTTCAGCTACCAAGTAT | 57.338 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3124 | 12941 | 7.717568 | TGAGATAGTTTCAGCTACCAAGTATC | 58.282 | 38.462 | 13.76 | 13.76 | 34.80 | 2.24 |
3125 | 12942 | 7.561722 | TGAGATAGTTTCAGCTACCAAGTATCT | 59.438 | 37.037 | 19.59 | 19.59 | 42.24 | 1.98 |
3126 | 12943 | 7.947282 | AGATAGTTTCAGCTACCAAGTATCTC | 58.053 | 38.462 | 16.43 | 3.13 | 38.16 | 2.75 |
3127 | 12944 | 5.000012 | AGTTTCAGCTACCAAGTATCTCG | 58.000 | 43.478 | 0.00 | 0.00 | 0.00 | 4.04 |
3128 | 12945 | 4.705507 | AGTTTCAGCTACCAAGTATCTCGA | 59.294 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
3129 | 12946 | 5.185249 | AGTTTCAGCTACCAAGTATCTCGAA | 59.815 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3130 | 12947 | 5.654603 | TTCAGCTACCAAGTATCTCGAAA | 57.345 | 39.130 | 0.00 | 0.00 | 0.00 | 3.46 |
3131 | 12948 | 4.995124 | TCAGCTACCAAGTATCTCGAAAC | 58.005 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
3132 | 12949 | 4.461431 | TCAGCTACCAAGTATCTCGAAACA | 59.539 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
3133 | 12950 | 4.800993 | CAGCTACCAAGTATCTCGAAACAG | 59.199 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
3134 | 12951 | 4.113354 | GCTACCAAGTATCTCGAAACAGG | 58.887 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
3135 | 12952 | 2.973945 | ACCAAGTATCTCGAAACAGGC | 58.026 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
3136 | 12953 | 2.301870 | ACCAAGTATCTCGAAACAGGCA | 59.698 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
3137 | 12954 | 3.055094 | ACCAAGTATCTCGAAACAGGCAT | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
3138 | 12955 | 3.941483 | CCAAGTATCTCGAAACAGGCATT | 59.059 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
3139 | 12956 | 4.034510 | CCAAGTATCTCGAAACAGGCATTC | 59.965 | 45.833 | 0.00 | 0.00 | 0.00 | 2.67 |
3141 | 12958 | 1.009829 | ATCTCGAAACAGGCATTCGC | 58.990 | 50.000 | 13.09 | 0.00 | 46.85 | 4.70 |
3142 | 12959 | 0.037326 | TCTCGAAACAGGCATTCGCT | 60.037 | 50.000 | 13.09 | 0.00 | 46.85 | 4.93 |
3143 | 12960 | 0.371645 | CTCGAAACAGGCATTCGCTC | 59.628 | 55.000 | 13.09 | 0.00 | 46.85 | 5.03 |
3144 | 12961 | 1.019278 | TCGAAACAGGCATTCGCTCC | 61.019 | 55.000 | 13.09 | 0.00 | 46.85 | 4.70 |
3145 | 12962 | 1.425428 | GAAACAGGCATTCGCTCCG | 59.575 | 57.895 | 0.00 | 0.00 | 38.60 | 4.63 |
3146 | 12963 | 2.583685 | GAAACAGGCATTCGCTCCGC | 62.584 | 60.000 | 0.00 | 0.00 | 38.60 | 5.54 |
3147 | 12964 | 3.612247 | AACAGGCATTCGCTCCGCT | 62.612 | 57.895 | 0.00 | 0.00 | 38.60 | 5.52 |
3148 | 12965 | 2.821366 | CAGGCATTCGCTCCGCTT | 60.821 | 61.111 | 0.00 | 0.00 | 38.60 | 4.68 |
3149 | 12966 | 2.045926 | AGGCATTCGCTCCGCTTT | 60.046 | 55.556 | 0.00 | 0.00 | 38.60 | 3.51 |
3150 | 12967 | 1.089481 | CAGGCATTCGCTCCGCTTTA | 61.089 | 55.000 | 0.00 | 0.00 | 38.60 | 1.85 |
3151 | 12968 | 0.179045 | AGGCATTCGCTCCGCTTTAT | 60.179 | 50.000 | 0.00 | 0.00 | 38.60 | 1.40 |
3152 | 12969 | 1.070134 | AGGCATTCGCTCCGCTTTATA | 59.930 | 47.619 | 0.00 | 0.00 | 38.60 | 0.98 |
3153 | 12970 | 1.871039 | GGCATTCGCTCCGCTTTATAA | 59.129 | 47.619 | 0.00 | 0.00 | 38.60 | 0.98 |
3154 | 12971 | 2.289547 | GGCATTCGCTCCGCTTTATAAA | 59.710 | 45.455 | 0.00 | 0.00 | 38.60 | 1.40 |
3155 | 12972 | 3.058224 | GGCATTCGCTCCGCTTTATAAAT | 60.058 | 43.478 | 0.00 | 0.00 | 38.60 | 1.40 |
3156 | 12973 | 4.153475 | GGCATTCGCTCCGCTTTATAAATA | 59.847 | 41.667 | 0.00 | 0.00 | 38.60 | 1.40 |
3157 | 12974 | 5.334569 | GGCATTCGCTCCGCTTTATAAATAA | 60.335 | 40.000 | 0.00 | 0.00 | 38.60 | 1.40 |
3158 | 12975 | 6.140110 | GCATTCGCTCCGCTTTATAAATAAA | 58.860 | 36.000 | 0.00 | 0.00 | 34.30 | 1.40 |
3159 | 12976 | 6.635239 | GCATTCGCTCCGCTTTATAAATAAAA | 59.365 | 34.615 | 0.00 | 0.00 | 31.75 | 1.52 |
3160 | 12977 | 7.357287 | GCATTCGCTCCGCTTTATAAATAAAAC | 60.357 | 37.037 | 0.00 | 0.00 | 31.75 | 2.43 |
3161 | 12978 | 6.665474 | TCGCTCCGCTTTATAAATAAAACA | 57.335 | 33.333 | 0.00 | 0.00 | 32.39 | 2.83 |
3162 | 12979 | 7.074507 | TCGCTCCGCTTTATAAATAAAACAA | 57.925 | 32.000 | 0.00 | 0.00 | 32.39 | 2.83 |
3163 | 12980 | 6.962678 | TCGCTCCGCTTTATAAATAAAACAAC | 59.037 | 34.615 | 0.00 | 0.00 | 32.39 | 3.32 |
3164 | 12981 | 6.743627 | CGCTCCGCTTTATAAATAAAACAACA | 59.256 | 34.615 | 0.00 | 0.00 | 32.39 | 3.33 |
3165 | 12982 | 7.271653 | CGCTCCGCTTTATAAATAAAACAACAA | 59.728 | 33.333 | 0.00 | 0.00 | 32.39 | 2.83 |
3166 | 12983 | 8.370321 | GCTCCGCTTTATAAATAAAACAACAAC | 58.630 | 33.333 | 0.00 | 0.00 | 32.39 | 3.32 |
3167 | 12984 | 8.745464 | TCCGCTTTATAAATAAAACAACAACC | 57.255 | 30.769 | 0.00 | 0.00 | 32.39 | 3.77 |
3168 | 12985 | 8.358148 | TCCGCTTTATAAATAAAACAACAACCA | 58.642 | 29.630 | 0.00 | 0.00 | 32.39 | 3.67 |
3169 | 12986 | 9.145865 | CCGCTTTATAAATAAAACAACAACCAT | 57.854 | 29.630 | 0.00 | 0.00 | 32.39 | 3.55 |
3179 | 12996 | 9.453325 | AATAAAACAACAACCATAAGTTACACG | 57.547 | 29.630 | 0.00 | 0.00 | 36.18 | 4.49 |
3180 | 12997 | 5.427036 | AACAACAACCATAAGTTACACGG | 57.573 | 39.130 | 0.00 | 0.00 | 36.18 | 4.94 |
3181 | 12998 | 3.251487 | ACAACAACCATAAGTTACACGGC | 59.749 | 43.478 | 0.00 | 0.00 | 36.18 | 5.68 |
3182 | 12999 | 2.070783 | ACAACCATAAGTTACACGGCG | 58.929 | 47.619 | 4.80 | 4.80 | 36.18 | 6.46 |
3183 | 13000 | 2.288948 | ACAACCATAAGTTACACGGCGA | 60.289 | 45.455 | 16.62 | 0.00 | 36.18 | 5.54 |
3184 | 13001 | 2.737783 | CAACCATAAGTTACACGGCGAA | 59.262 | 45.455 | 16.62 | 0.00 | 36.18 | 4.70 |
3185 | 13002 | 3.042871 | ACCATAAGTTACACGGCGAAA | 57.957 | 42.857 | 16.62 | 1.36 | 0.00 | 3.46 |
3186 | 13003 | 3.401182 | ACCATAAGTTACACGGCGAAAA | 58.599 | 40.909 | 16.62 | 0.94 | 0.00 | 2.29 |
3187 | 13004 | 3.434299 | ACCATAAGTTACACGGCGAAAAG | 59.566 | 43.478 | 16.62 | 2.56 | 0.00 | 2.27 |
3188 | 13005 | 3.680937 | CCATAAGTTACACGGCGAAAAGA | 59.319 | 43.478 | 16.62 | 0.00 | 0.00 | 2.52 |
3189 | 13006 | 4.331717 | CCATAAGTTACACGGCGAAAAGAT | 59.668 | 41.667 | 16.62 | 0.00 | 0.00 | 2.40 |
3190 | 13007 | 5.521010 | CCATAAGTTACACGGCGAAAAGATA | 59.479 | 40.000 | 16.62 | 0.00 | 0.00 | 1.98 |
3191 | 13008 | 4.916099 | AAGTTACACGGCGAAAAGATAC | 57.084 | 40.909 | 16.62 | 1.99 | 0.00 | 2.24 |
3192 | 13009 | 3.916761 | AGTTACACGGCGAAAAGATACA | 58.083 | 40.909 | 16.62 | 0.00 | 0.00 | 2.29 |
3193 | 13010 | 4.309099 | AGTTACACGGCGAAAAGATACAA | 58.691 | 39.130 | 16.62 | 0.00 | 0.00 | 2.41 |
3194 | 13011 | 4.933400 | AGTTACACGGCGAAAAGATACAAT | 59.067 | 37.500 | 16.62 | 0.00 | 0.00 | 2.71 |
3195 | 13012 | 6.101332 | AGTTACACGGCGAAAAGATACAATA | 58.899 | 36.000 | 16.62 | 0.00 | 0.00 | 1.90 |
3196 | 13013 | 6.759827 | AGTTACACGGCGAAAAGATACAATAT | 59.240 | 34.615 | 16.62 | 0.00 | 0.00 | 1.28 |
3197 | 13014 | 5.403897 | ACACGGCGAAAAGATACAATATG | 57.596 | 39.130 | 16.62 | 0.00 | 0.00 | 1.78 |
3198 | 13015 | 5.113383 | ACACGGCGAAAAGATACAATATGA | 58.887 | 37.500 | 16.62 | 0.00 | 0.00 | 2.15 |
3199 | 13016 | 5.758296 | ACACGGCGAAAAGATACAATATGAT | 59.242 | 36.000 | 16.62 | 0.00 | 0.00 | 2.45 |
3200 | 13017 | 6.073369 | CACGGCGAAAAGATACAATATGATG | 58.927 | 40.000 | 16.62 | 0.00 | 0.00 | 3.07 |
3201 | 13018 | 5.989168 | ACGGCGAAAAGATACAATATGATGA | 59.011 | 36.000 | 16.62 | 0.00 | 0.00 | 2.92 |
3202 | 13019 | 6.146184 | ACGGCGAAAAGATACAATATGATGAG | 59.854 | 38.462 | 16.62 | 0.00 | 0.00 | 2.90 |
3203 | 13020 | 6.401474 | CGGCGAAAAGATACAATATGATGAGG | 60.401 | 42.308 | 0.00 | 0.00 | 0.00 | 3.86 |
3204 | 13021 | 6.428159 | GGCGAAAAGATACAATATGATGAGGT | 59.572 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
3205 | 13022 | 7.602644 | GGCGAAAAGATACAATATGATGAGGTA | 59.397 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
3206 | 13023 | 8.988934 | GCGAAAAGATACAATATGATGAGGTAA | 58.011 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
3209 | 13026 | 9.574516 | AAAAGATACAATATGATGAGGTAACCC | 57.425 | 33.333 | 0.00 | 0.00 | 37.17 | 4.11 |
3210 | 13027 | 8.511748 | AAGATACAATATGATGAGGTAACCCT | 57.488 | 34.615 | 0.00 | 0.00 | 46.66 | 4.34 |
3228 | 13045 | 2.215907 | CTCTCACATAGAGCAACCGG | 57.784 | 55.000 | 0.00 | 0.00 | 45.22 | 5.28 |
3233 | 13050 | 4.038042 | TCTCACATAGAGCAACCGGATAAG | 59.962 | 45.833 | 9.46 | 0.00 | 44.35 | 1.73 |
3254 | 13071 | 6.655078 | AAGAGAACAATAAGCACAAATGGT | 57.345 | 33.333 | 0.00 | 0.00 | 38.52 | 3.55 |
3306 | 13123 | 3.187842 | AGAAAACGGGAATAAGAACACGC | 59.812 | 43.478 | 0.00 | 0.00 | 36.31 | 5.34 |
3396 | 13213 | 8.934507 | ACTCTAGAATTTACAATACACTCAGC | 57.065 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
3397 | 13214 | 8.531982 | ACTCTAGAATTTACAATACACTCAGCA | 58.468 | 33.333 | 0.00 | 0.00 | 0.00 | 4.41 |
3398 | 13215 | 8.703604 | TCTAGAATTTACAATACACTCAGCAC | 57.296 | 34.615 | 0.00 | 0.00 | 0.00 | 4.40 |
3399 | 13216 | 6.743575 | AGAATTTACAATACACTCAGCACC | 57.256 | 37.500 | 0.00 | 0.00 | 0.00 | 5.01 |
3400 | 13217 | 6.476378 | AGAATTTACAATACACTCAGCACCT | 58.524 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3401 | 13218 | 6.942576 | AGAATTTACAATACACTCAGCACCTT | 59.057 | 34.615 | 0.00 | 0.00 | 0.00 | 3.50 |
3402 | 13219 | 8.100791 | AGAATTTACAATACACTCAGCACCTTA | 58.899 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
3403 | 13220 | 7.611213 | ATTTACAATACACTCAGCACCTTAC | 57.389 | 36.000 | 0.00 | 0.00 | 0.00 | 2.34 |
3404 | 13221 | 3.939066 | ACAATACACTCAGCACCTTACC | 58.061 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
3405 | 13222 | 3.326588 | ACAATACACTCAGCACCTTACCA | 59.673 | 43.478 | 0.00 | 0.00 | 0.00 | 3.25 |
3406 | 13223 | 4.202419 | ACAATACACTCAGCACCTTACCAA | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
3407 | 13224 | 2.256117 | ACACTCAGCACCTTACCAAC | 57.744 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3408 | 13225 | 1.768870 | ACACTCAGCACCTTACCAACT | 59.231 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
3409 | 13226 | 2.969950 | ACACTCAGCACCTTACCAACTA | 59.030 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
3410 | 13227 | 3.006967 | ACACTCAGCACCTTACCAACTAG | 59.993 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
3411 | 13228 | 2.028020 | ACTCAGCACCTTACCAACTAGC | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 3.42 |
3412 | 13229 | 1.974957 | TCAGCACCTTACCAACTAGCA | 59.025 | 47.619 | 0.00 | 0.00 | 0.00 | 3.49 |
3413 | 13230 | 2.028112 | TCAGCACCTTACCAACTAGCAG | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3414 | 13231 | 1.087501 | GCACCTTACCAACTAGCAGC | 58.912 | 55.000 | 0.00 | 0.00 | 0.00 | 5.25 |
3415 | 13232 | 1.610624 | GCACCTTACCAACTAGCAGCA | 60.611 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
3416 | 13233 | 2.778299 | CACCTTACCAACTAGCAGCAA | 58.222 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
3417 | 13234 | 2.484264 | CACCTTACCAACTAGCAGCAAC | 59.516 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3418 | 13235 | 2.084546 | CCTTACCAACTAGCAGCAACC | 58.915 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
3419 | 13236 | 2.552155 | CCTTACCAACTAGCAGCAACCA | 60.552 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3420 | 13237 | 2.178912 | TACCAACTAGCAGCAACCAC | 57.821 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
3421 | 13238 | 0.182537 | ACCAACTAGCAGCAACCACA | 59.817 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3422 | 13239 | 1.317613 | CCAACTAGCAGCAACCACAA | 58.682 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
3423 | 13240 | 1.267806 | CCAACTAGCAGCAACCACAAG | 59.732 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
3424 | 13241 | 1.949525 | CAACTAGCAGCAACCACAAGT | 59.050 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
3425 | 13242 | 1.597742 | ACTAGCAGCAACCACAAGTG | 58.402 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3436 | 13253 | 2.223537 | CCACAAGTGGCAAGAAAACC | 57.776 | 50.000 | 6.27 | 0.00 | 44.73 | 3.27 |
3437 | 13254 | 1.480137 | CCACAAGTGGCAAGAAAACCA | 59.520 | 47.619 | 6.27 | 0.00 | 44.73 | 3.67 |
3444 | 13261 | 3.685139 | TGGCAAGAAAACCACAAAACA | 57.315 | 38.095 | 0.00 | 0.00 | 0.00 | 2.83 |
3445 | 13262 | 4.008074 | TGGCAAGAAAACCACAAAACAA | 57.992 | 36.364 | 0.00 | 0.00 | 0.00 | 2.83 |
3446 | 13263 | 4.389374 | TGGCAAGAAAACCACAAAACAAA | 58.611 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
3447 | 13264 | 4.453819 | TGGCAAGAAAACCACAAAACAAAG | 59.546 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
3448 | 13265 | 4.454161 | GGCAAGAAAACCACAAAACAAAGT | 59.546 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
3449 | 13266 | 5.049060 | GGCAAGAAAACCACAAAACAAAGTT | 60.049 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
3450 | 13267 | 6.147985 | GGCAAGAAAACCACAAAACAAAGTTA | 59.852 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
3451 | 13268 | 7.308049 | GGCAAGAAAACCACAAAACAAAGTTAA | 60.308 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
3452 | 13269 | 8.233868 | GCAAGAAAACCACAAAACAAAGTTAAT | 58.766 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3453 | 13270 | 9.540431 | CAAGAAAACCACAAAACAAAGTTAATG | 57.460 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
3454 | 13271 | 7.747888 | AGAAAACCACAAAACAAAGTTAATGC | 58.252 | 30.769 | 0.00 | 0.00 | 0.00 | 3.56 |
3455 | 13272 | 7.389053 | AGAAAACCACAAAACAAAGTTAATGCA | 59.611 | 29.630 | 0.00 | 0.00 | 0.00 | 3.96 |
3456 | 13273 | 6.660887 | AACCACAAAACAAAGTTAATGCAG | 57.339 | 33.333 | 0.00 | 0.00 | 0.00 | 4.41 |
3457 | 13274 | 5.971763 | ACCACAAAACAAAGTTAATGCAGA | 58.028 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
3458 | 13275 | 6.581712 | ACCACAAAACAAAGTTAATGCAGAT | 58.418 | 32.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3459 | 13276 | 7.047271 | ACCACAAAACAAAGTTAATGCAGATT | 58.953 | 30.769 | 0.00 | 0.00 | 0.00 | 2.40 |
3460 | 13277 | 8.200792 | ACCACAAAACAAAGTTAATGCAGATTA | 58.799 | 29.630 | 0.00 | 0.00 | 0.00 | 1.75 |
3461 | 13278 | 9.206870 | CCACAAAACAAAGTTAATGCAGATTAT | 57.793 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
3463 | 13280 | 9.762933 | ACAAAACAAAGTTAATGCAGATTATGT | 57.237 | 25.926 | 0.00 | 0.00 | 0.00 | 2.29 |
3467 | 13284 | 9.855021 | AACAAAGTTAATGCAGATTATGTTACC | 57.145 | 29.630 | 0.00 | 0.00 | 28.46 | 2.85 |
3468 | 13285 | 9.243105 | ACAAAGTTAATGCAGATTATGTTACCT | 57.757 | 29.630 | 0.00 | 0.00 | 0.00 | 3.08 |
3471 | 13288 | 8.142994 | AGTTAATGCAGATTATGTTACCTTCG | 57.857 | 34.615 | 0.00 | 0.00 | 0.00 | 3.79 |
3472 | 13289 | 7.985184 | AGTTAATGCAGATTATGTTACCTTCGA | 59.015 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
3473 | 13290 | 8.774586 | GTTAATGCAGATTATGTTACCTTCGAT | 58.225 | 33.333 | 0.00 | 0.00 | 0.00 | 3.59 |
3474 | 13291 | 9.990360 | TTAATGCAGATTATGTTACCTTCGATA | 57.010 | 29.630 | 0.00 | 0.00 | 0.00 | 2.92 |
3475 | 13292 | 8.902540 | AATGCAGATTATGTTACCTTCGATAA | 57.097 | 30.769 | 0.00 | 0.00 | 0.00 | 1.75 |
3476 | 13293 | 7.709269 | TGCAGATTATGTTACCTTCGATAAC | 57.291 | 36.000 | 1.28 | 1.28 | 33.85 | 1.89 |
3477 | 13294 | 6.704493 | TGCAGATTATGTTACCTTCGATAACC | 59.296 | 38.462 | 5.24 | 0.00 | 32.52 | 2.85 |
3478 | 13295 | 6.929606 | GCAGATTATGTTACCTTCGATAACCT | 59.070 | 38.462 | 5.24 | 0.00 | 32.52 | 3.50 |
3479 | 13296 | 8.086522 | GCAGATTATGTTACCTTCGATAACCTA | 58.913 | 37.037 | 5.24 | 0.00 | 32.52 | 3.08 |
3484 | 13301 | 5.839621 | TGTTACCTTCGATAACCTATGAGC | 58.160 | 41.667 | 5.24 | 0.00 | 32.52 | 4.26 |
3485 | 13302 | 5.597182 | TGTTACCTTCGATAACCTATGAGCT | 59.403 | 40.000 | 5.24 | 0.00 | 32.52 | 4.09 |
3486 | 13303 | 4.592485 | ACCTTCGATAACCTATGAGCTG | 57.408 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
3503 | 13320 | 1.932511 | GCTGCTCTCATACTGCTGAAC | 59.067 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
3516 | 13333 | 1.586028 | CTGAACCAAATGGCACGGG | 59.414 | 57.895 | 0.00 | 0.00 | 39.32 | 5.28 |
3519 | 13336 | 0.894835 | GAACCAAATGGCACGGGATT | 59.105 | 50.000 | 7.80 | 0.00 | 39.32 | 3.01 |
3520 | 13337 | 1.275010 | GAACCAAATGGCACGGGATTT | 59.725 | 47.619 | 7.80 | 0.00 | 39.32 | 2.17 |
3521 | 13338 | 0.607620 | ACCAAATGGCACGGGATTTG | 59.392 | 50.000 | 7.80 | 5.13 | 38.67 | 2.32 |
3522 | 13339 | 3.439494 | CAAATGGCACGGGATTTGG | 57.561 | 52.632 | 4.33 | 0.00 | 36.37 | 3.28 |
3560 | 13377 | 9.856488 | ATATGTAAGCTCGAAACATATACGAAT | 57.144 | 29.630 | 16.31 | 1.70 | 42.27 | 3.34 |
3835 | 13652 | 1.133513 | TGGAAGAACCATTGTGCCACT | 60.134 | 47.619 | 0.00 | 0.00 | 44.64 | 4.00 |
3843 | 13660 | 3.700538 | ACCATTGTGCCACTAACATCAT | 58.299 | 40.909 | 0.00 | 0.00 | 0.00 | 2.45 |
3845 | 13662 | 4.883585 | ACCATTGTGCCACTAACATCATAG | 59.116 | 41.667 | 0.00 | 0.00 | 0.00 | 2.23 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
8 | 9 | 2.513897 | GCCTGGTTTCGGATCCGG | 60.514 | 66.667 | 32.79 | 16.38 | 40.25 | 5.14 |
17 | 18 | 1.062488 | AGTGGGTCAGAGCCTGGTTT | 61.062 | 55.000 | 19.59 | 0.00 | 36.53 | 3.27 |
36 | 37 | 1.774894 | AAGCCCTACGCCTCCAACAA | 61.775 | 55.000 | 0.00 | 0.00 | 38.78 | 2.83 |
39 | 40 | 1.198759 | AAGAAGCCCTACGCCTCCAA | 61.199 | 55.000 | 0.00 | 0.00 | 38.78 | 3.53 |
69 | 70 | 1.966451 | CACTTCCAGGACCGGTTGC | 60.966 | 63.158 | 9.42 | 0.00 | 0.00 | 4.17 |
81 | 82 | 2.896801 | CGCACACCAGCACACTTCC | 61.897 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
84 | 85 | 1.889105 | CTTCGCACACCAGCACACT | 60.889 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
108 | 109 | 1.075600 | CCTCCTCCTCTCCTGTCCC | 60.076 | 68.421 | 0.00 | 0.00 | 0.00 | 4.46 |
113 | 114 | 1.348160 | ACCCTATCCTCCTCCTCTCCT | 60.348 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
114 | 115 | 1.163408 | ACCCTATCCTCCTCCTCTCC | 58.837 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
141 | 142 | 1.421410 | ATTAAAGCCAGACGAGCGCG | 61.421 | 55.000 | 8.75 | 8.75 | 44.79 | 6.86 |
161 | 162 | 3.647771 | GACAACCCTTCCCCGGCT | 61.648 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
163 | 164 | 2.798148 | CTTCGACAACCCTTCCCCGG | 62.798 | 65.000 | 0.00 | 0.00 | 0.00 | 5.73 |
164 | 165 | 1.375523 | CTTCGACAACCCTTCCCCG | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 5.73 |
171 | 172 | 2.814336 | AGAATTGAAGCTTCGACAACCC | 59.186 | 45.455 | 18.81 | 6.54 | 0.00 | 4.11 |
179 | 180 | 5.044558 | CCTACTCCGTAGAATTGAAGCTTC | 58.955 | 45.833 | 19.89 | 19.89 | 38.29 | 3.86 |
188 | 189 | 2.879646 | CGAGAAGCCTACTCCGTAGAAT | 59.120 | 50.000 | 2.74 | 0.00 | 38.29 | 2.40 |
191 | 192 | 0.945813 | CCGAGAAGCCTACTCCGTAG | 59.054 | 60.000 | 0.00 | 0.00 | 36.04 | 3.51 |
192 | 193 | 0.254178 | ACCGAGAAGCCTACTCCGTA | 59.746 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
209 | 210 | 3.406361 | CACGTCAGTGCAGCGACC | 61.406 | 66.667 | 9.30 | 0.00 | 41.94 | 4.79 |
229 | 230 | 0.326595 | TGCCATCCACCAATACGTGT | 59.673 | 50.000 | 0.00 | 0.00 | 31.47 | 4.49 |
230 | 231 | 1.334556 | CATGCCATCCACCAATACGTG | 59.665 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
231 | 232 | 1.064758 | ACATGCCATCCACCAATACGT | 60.065 | 47.619 | 0.00 | 0.00 | 0.00 | 3.57 |
248 | 249 | 3.693085 | GTCACATTCATTCTGGCTGACAT | 59.307 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
250 | 251 | 2.094894 | CGTCACATTCATTCTGGCTGAC | 59.905 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
258 | 259 | 5.757886 | TGGAAAACTTCGTCACATTCATTC | 58.242 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
288 | 289 | 0.759436 | AACTCCTCTCCCGTGTGTGT | 60.759 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
297 | 298 | 4.344359 | AACTCACTCAAAACTCCTCTCC | 57.656 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
304 | 305 | 2.097466 | CGCACCAAACTCACTCAAAACT | 59.903 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
311 | 312 | 1.594293 | CCGACGCACCAAACTCACT | 60.594 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
334 | 335 | 2.954753 | CTGAACGTCTGCCGCAACC | 61.955 | 63.158 | 0.00 | 0.00 | 41.42 | 3.77 |
352 | 353 | 0.893727 | AAACATTGTCCGGGCCAGTC | 60.894 | 55.000 | 2.12 | 0.00 | 0.00 | 3.51 |
358 | 359 | 0.808755 | GGCTACAAACATTGTCCGGG | 59.191 | 55.000 | 0.00 | 0.00 | 44.12 | 5.73 |
359 | 360 | 0.446222 | CGGCTACAAACATTGTCCGG | 59.554 | 55.000 | 12.82 | 0.00 | 43.39 | 5.14 |
360 | 361 | 3.967734 | CGGCTACAAACATTGTCCG | 57.032 | 52.632 | 8.38 | 8.38 | 44.12 | 4.79 |
381 | 382 | 5.351740 | ACTCGAAAGCTTTTAGCCATCTAAC | 59.648 | 40.000 | 14.05 | 0.00 | 43.77 | 2.34 |
436 | 437 | 1.956477 | GCCAACTCCAACTTGTGTCAT | 59.044 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
440 | 441 | 0.670162 | CAGGCCAACTCCAACTTGTG | 59.330 | 55.000 | 5.01 | 0.00 | 0.00 | 3.33 |
444 | 445 | 1.140312 | TTCTCAGGCCAACTCCAACT | 58.860 | 50.000 | 5.01 | 0.00 | 0.00 | 3.16 |
455 | 456 | 2.291741 | CCAACTTTCTGTGTTCTCAGGC | 59.708 | 50.000 | 2.76 | 0.00 | 36.25 | 4.85 |
459 | 460 | 3.938963 | TGTGTCCAACTTTCTGTGTTCTC | 59.061 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
468 | 469 | 0.603065 | GCCCCATGTGTCCAACTTTC | 59.397 | 55.000 | 0.00 | 0.00 | 0.00 | 2.62 |
469 | 470 | 0.188342 | AGCCCCATGTGTCCAACTTT | 59.812 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
471 | 472 | 1.380302 | GAGCCCCATGTGTCCAACT | 59.620 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
483 | 484 | 0.460987 | CACGTGATCTCTTGAGCCCC | 60.461 | 60.000 | 10.90 | 0.00 | 0.00 | 5.80 |
492 | 493 | 3.786576 | CGAACATGTACTCACGTGATCTC | 59.213 | 47.826 | 20.40 | 12.22 | 43.26 | 2.75 |
516 | 519 | 8.922676 | CATGCAAAATCTAAATATGATTCTGGC | 58.077 | 33.333 | 0.00 | 0.00 | 33.54 | 4.85 |
559 | 562 | 4.288531 | CGTGGGCTACTTTACTTATCTCG | 58.711 | 47.826 | 0.00 | 0.00 | 0.00 | 4.04 |
562 | 569 | 3.788937 | TGCGTGGGCTACTTTACTTATC | 58.211 | 45.455 | 0.00 | 0.00 | 40.82 | 1.75 |
572 | 596 | 2.033194 | GGACACTTGCGTGGGCTAC | 61.033 | 63.158 | 0.00 | 0.00 | 45.50 | 3.58 |
606 | 634 | 0.184451 | AGAGAAGCGTATACCCCCGA | 59.816 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
797 | 2108 | 3.695060 | AGATTGAGAGGGTAGTGTACGTG | 59.305 | 47.826 | 0.00 | 0.00 | 0.00 | 4.49 |
798 | 2109 | 3.946558 | GAGATTGAGAGGGTAGTGTACGT | 59.053 | 47.826 | 0.00 | 0.00 | 0.00 | 3.57 |
799 | 2110 | 4.200874 | AGAGATTGAGAGGGTAGTGTACG | 58.799 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
913 | 2334 | 0.036010 | GGTTGGCTAAGCTCAGCTCA | 60.036 | 55.000 | 9.21 | 2.16 | 38.25 | 4.26 |
914 | 2335 | 0.036010 | TGGTTGGCTAAGCTCAGCTC | 60.036 | 55.000 | 9.21 | 0.00 | 38.25 | 4.09 |
915 | 2336 | 0.322008 | GTGGTTGGCTAAGCTCAGCT | 60.322 | 55.000 | 9.21 | 0.00 | 42.56 | 4.24 |
916 | 2337 | 0.606401 | TGTGGTTGGCTAAGCTCAGC | 60.606 | 55.000 | 13.36 | 0.00 | 41.02 | 4.26 |
917 | 2338 | 1.160137 | GTGTGGTTGGCTAAGCTCAG | 58.840 | 55.000 | 15.62 | 0.00 | 38.14 | 3.35 |
953 | 2382 | 1.002011 | AAGAAGAGAAAGCCGGGGC | 60.002 | 57.895 | 2.18 | 0.18 | 42.33 | 5.80 |
976 | 2405 | 3.628280 | GAGTGAGTGGTCGGTCGGC | 62.628 | 68.421 | 0.00 | 0.00 | 0.00 | 5.54 |
1281 | 2763 | 2.459969 | ATGCATCCCGTGGGGCATA | 61.460 | 57.895 | 17.01 | 0.00 | 43.94 | 3.14 |
1288 | 2776 | 3.520862 | GTGGCCATGCATCCCGTG | 61.521 | 66.667 | 9.72 | 0.00 | 0.00 | 4.94 |
1662 | 3169 | 0.543749 | GAGTTGATGGAGAGTGGGGG | 59.456 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
1753 | 7130 | 2.687935 | GACTGGAAAGGCAAACAGTTCA | 59.312 | 45.455 | 0.00 | 0.00 | 43.61 | 3.18 |
1940 | 7404 | 2.242926 | GATCCTGTCTCCATCGATCCA | 58.757 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2197 | 11712 | 7.653311 | ACCAAAATCTTTTAACTCGTACGTACT | 59.347 | 33.333 | 22.55 | 7.25 | 0.00 | 2.73 |
2208 | 11729 | 6.280643 | ACCTTGAGCACCAAAATCTTTTAAC | 58.719 | 36.000 | 0.00 | 0.00 | 33.76 | 2.01 |
2214 | 11735 | 3.507622 | GCTAACCTTGAGCACCAAAATCT | 59.492 | 43.478 | 0.00 | 0.00 | 39.84 | 2.40 |
2245 | 11784 | 9.921637 | CCAATTACAAGAACAATTTAGGCTAAA | 57.078 | 29.630 | 21.05 | 21.05 | 0.00 | 1.85 |
2246 | 11785 | 9.303116 | TCCAATTACAAGAACAATTTAGGCTAA | 57.697 | 29.630 | 2.04 | 2.04 | 0.00 | 3.09 |
2386 | 12061 | 1.206072 | CGGAGTCTTTCGACGACGT | 59.794 | 57.895 | 0.00 | 0.00 | 44.93 | 4.34 |
2443 | 12118 | 2.125793 | GTCGGCGGTGTAGGAACC | 60.126 | 66.667 | 7.21 | 0.00 | 36.82 | 3.62 |
2650 | 12352 | 4.719369 | GTCGTCGGCCTTGTCGCT | 62.719 | 66.667 | 0.00 | 0.00 | 0.00 | 4.93 |
2656 | 12358 | 4.719369 | GTGAGCGTCGTCGGCCTT | 62.719 | 66.667 | 0.00 | 0.00 | 37.56 | 4.35 |
2720 | 12443 | 1.378250 | GCTGCTGCTCCTGATGGTT | 60.378 | 57.895 | 8.53 | 0.00 | 36.03 | 3.67 |
2836 | 12578 | 1.301479 | GTTGGAGACCTCGCCGTTT | 60.301 | 57.895 | 0.00 | 0.00 | 38.78 | 3.60 |
2852 | 12594 | 0.375803 | GCGTTGTCGTTGTTCTGGTT | 59.624 | 50.000 | 0.00 | 0.00 | 39.49 | 3.67 |
2987 | 12776 | 2.849473 | CCGGTGAAAACAAAACACTTCG | 59.151 | 45.455 | 0.00 | 0.00 | 35.28 | 3.79 |
3075 | 12876 | 5.354842 | AGTCCACTATAAACTAAGGGTGC | 57.645 | 43.478 | 0.00 | 0.00 | 0.00 | 5.01 |
3110 | 12927 | 4.744570 | TGTTTCGAGATACTTGGTAGCTG | 58.255 | 43.478 | 0.00 | 0.00 | 34.77 | 4.24 |
3114 | 12931 | 3.512329 | TGCCTGTTTCGAGATACTTGGTA | 59.488 | 43.478 | 0.00 | 0.00 | 0.00 | 3.25 |
3123 | 12940 | 0.037326 | AGCGAATGCCTGTTTCGAGA | 60.037 | 50.000 | 9.74 | 0.00 | 46.73 | 4.04 |
3124 | 12941 | 0.371645 | GAGCGAATGCCTGTTTCGAG | 59.628 | 55.000 | 9.74 | 0.00 | 46.73 | 4.04 |
3125 | 12942 | 1.019278 | GGAGCGAATGCCTGTTTCGA | 61.019 | 55.000 | 9.74 | 0.00 | 46.73 | 3.71 |
3126 | 12943 | 1.425428 | GGAGCGAATGCCTGTTTCG | 59.575 | 57.895 | 1.70 | 1.70 | 46.56 | 3.46 |
3127 | 12944 | 1.425428 | CGGAGCGAATGCCTGTTTC | 59.575 | 57.895 | 0.00 | 0.00 | 44.31 | 2.78 |
3128 | 12945 | 3.578456 | CGGAGCGAATGCCTGTTT | 58.422 | 55.556 | 0.00 | 0.00 | 44.31 | 2.83 |
3141 | 12958 | 8.856247 | GGTTGTTGTTTTATTTATAAAGCGGAG | 58.144 | 33.333 | 3.94 | 0.00 | 36.59 | 4.63 |
3142 | 12959 | 8.358148 | TGGTTGTTGTTTTATTTATAAAGCGGA | 58.642 | 29.630 | 3.94 | 0.00 | 36.59 | 5.54 |
3143 | 12960 | 8.522178 | TGGTTGTTGTTTTATTTATAAAGCGG | 57.478 | 30.769 | 3.94 | 0.00 | 36.59 | 5.52 |
3153 | 12970 | 9.453325 | CGTGTAACTTATGGTTGTTGTTTTATT | 57.547 | 29.630 | 0.00 | 0.00 | 38.75 | 1.40 |
3154 | 12971 | 8.077386 | CCGTGTAACTTATGGTTGTTGTTTTAT | 58.923 | 33.333 | 0.00 | 0.00 | 38.75 | 1.40 |
3155 | 12972 | 7.416022 | CCGTGTAACTTATGGTTGTTGTTTTA | 58.584 | 34.615 | 0.00 | 0.00 | 38.75 | 1.52 |
3156 | 12973 | 6.267070 | CCGTGTAACTTATGGTTGTTGTTTT | 58.733 | 36.000 | 0.00 | 0.00 | 38.75 | 2.43 |
3157 | 12974 | 5.733937 | GCCGTGTAACTTATGGTTGTTGTTT | 60.734 | 40.000 | 0.00 | 0.00 | 38.75 | 2.83 |
3158 | 12975 | 4.261280 | GCCGTGTAACTTATGGTTGTTGTT | 60.261 | 41.667 | 0.00 | 0.00 | 38.75 | 2.83 |
3159 | 12976 | 3.251487 | GCCGTGTAACTTATGGTTGTTGT | 59.749 | 43.478 | 0.00 | 0.00 | 38.75 | 3.32 |
3160 | 12977 | 3.665848 | CGCCGTGTAACTTATGGTTGTTG | 60.666 | 47.826 | 0.00 | 0.00 | 38.75 | 3.33 |
3161 | 12978 | 2.481185 | CGCCGTGTAACTTATGGTTGTT | 59.519 | 45.455 | 0.00 | 0.00 | 38.75 | 2.83 |
3162 | 12979 | 2.070783 | CGCCGTGTAACTTATGGTTGT | 58.929 | 47.619 | 0.00 | 0.00 | 38.75 | 3.32 |
3163 | 12980 | 2.339418 | TCGCCGTGTAACTTATGGTTG | 58.661 | 47.619 | 0.00 | 0.00 | 38.75 | 3.77 |
3164 | 12981 | 2.747396 | TCGCCGTGTAACTTATGGTT | 57.253 | 45.000 | 0.00 | 0.00 | 41.54 | 3.67 |
3165 | 12982 | 2.747396 | TTCGCCGTGTAACTTATGGT | 57.253 | 45.000 | 0.00 | 0.00 | 31.75 | 3.55 |
3166 | 12983 | 3.680937 | TCTTTTCGCCGTGTAACTTATGG | 59.319 | 43.478 | 0.00 | 0.00 | 31.75 | 2.74 |
3167 | 12984 | 4.914312 | TCTTTTCGCCGTGTAACTTATG | 57.086 | 40.909 | 0.00 | 0.00 | 31.75 | 1.90 |
3168 | 12985 | 6.101332 | TGTATCTTTTCGCCGTGTAACTTAT | 58.899 | 36.000 | 0.00 | 0.00 | 31.75 | 1.73 |
3169 | 12986 | 5.468592 | TGTATCTTTTCGCCGTGTAACTTA | 58.531 | 37.500 | 0.00 | 0.00 | 31.75 | 2.24 |
3170 | 12987 | 4.309099 | TGTATCTTTTCGCCGTGTAACTT | 58.691 | 39.130 | 0.00 | 0.00 | 31.75 | 2.66 |
3171 | 12988 | 3.916761 | TGTATCTTTTCGCCGTGTAACT | 58.083 | 40.909 | 0.00 | 0.00 | 31.75 | 2.24 |
3172 | 12989 | 4.650545 | TTGTATCTTTTCGCCGTGTAAC | 57.349 | 40.909 | 0.00 | 0.00 | 0.00 | 2.50 |
3173 | 12990 | 6.757478 | TCATATTGTATCTTTTCGCCGTGTAA | 59.243 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
3174 | 12991 | 6.274579 | TCATATTGTATCTTTTCGCCGTGTA | 58.725 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3175 | 12992 | 5.113383 | TCATATTGTATCTTTTCGCCGTGT | 58.887 | 37.500 | 0.00 | 0.00 | 0.00 | 4.49 |
3176 | 12993 | 5.651172 | TCATATTGTATCTTTTCGCCGTG | 57.349 | 39.130 | 0.00 | 0.00 | 0.00 | 4.94 |
3177 | 12994 | 5.989168 | TCATCATATTGTATCTTTTCGCCGT | 59.011 | 36.000 | 0.00 | 0.00 | 0.00 | 5.68 |
3178 | 12995 | 6.401474 | CCTCATCATATTGTATCTTTTCGCCG | 60.401 | 42.308 | 0.00 | 0.00 | 0.00 | 6.46 |
3179 | 12996 | 6.428159 | ACCTCATCATATTGTATCTTTTCGCC | 59.572 | 38.462 | 0.00 | 0.00 | 0.00 | 5.54 |
3180 | 12997 | 7.426929 | ACCTCATCATATTGTATCTTTTCGC | 57.573 | 36.000 | 0.00 | 0.00 | 0.00 | 4.70 |
3183 | 13000 | 9.574516 | GGGTTACCTCATCATATTGTATCTTTT | 57.425 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
3184 | 13001 | 8.949421 | AGGGTTACCTCATCATATTGTATCTTT | 58.051 | 33.333 | 0.00 | 0.00 | 46.95 | 2.52 |
3185 | 13002 | 8.511748 | AGGGTTACCTCATCATATTGTATCTT | 57.488 | 34.615 | 0.00 | 0.00 | 46.95 | 2.40 |
3210 | 13027 | 1.847328 | TCCGGTTGCTCTATGTGAGA | 58.153 | 50.000 | 0.00 | 0.00 | 45.39 | 3.27 |
3211 | 13028 | 2.898729 | ATCCGGTTGCTCTATGTGAG | 57.101 | 50.000 | 0.00 | 0.00 | 45.33 | 3.51 |
3212 | 13029 | 3.958147 | TCTTATCCGGTTGCTCTATGTGA | 59.042 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
3213 | 13030 | 4.038042 | TCTCTTATCCGGTTGCTCTATGTG | 59.962 | 45.833 | 0.00 | 0.00 | 0.00 | 3.21 |
3214 | 13031 | 4.215908 | TCTCTTATCCGGTTGCTCTATGT | 58.784 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
3215 | 13032 | 4.855715 | TCTCTTATCCGGTTGCTCTATG | 57.144 | 45.455 | 0.00 | 0.00 | 0.00 | 2.23 |
3216 | 13033 | 4.649674 | TGTTCTCTTATCCGGTTGCTCTAT | 59.350 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
3217 | 13034 | 4.021229 | TGTTCTCTTATCCGGTTGCTCTA | 58.979 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
3218 | 13035 | 2.832129 | TGTTCTCTTATCCGGTTGCTCT | 59.168 | 45.455 | 0.00 | 0.00 | 0.00 | 4.09 |
3219 | 13036 | 3.247006 | TGTTCTCTTATCCGGTTGCTC | 57.753 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
3220 | 13037 | 3.695830 | TTGTTCTCTTATCCGGTTGCT | 57.304 | 42.857 | 0.00 | 0.00 | 0.00 | 3.91 |
3221 | 13038 | 5.504173 | GCTTATTGTTCTCTTATCCGGTTGC | 60.504 | 44.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3222 | 13039 | 5.584649 | TGCTTATTGTTCTCTTATCCGGTTG | 59.415 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3223 | 13040 | 5.585047 | GTGCTTATTGTTCTCTTATCCGGTT | 59.415 | 40.000 | 0.00 | 0.00 | 0.00 | 4.44 |
3224 | 13041 | 5.116882 | GTGCTTATTGTTCTCTTATCCGGT | 58.883 | 41.667 | 0.00 | 0.00 | 0.00 | 5.28 |
3225 | 13042 | 5.116180 | TGTGCTTATTGTTCTCTTATCCGG | 58.884 | 41.667 | 0.00 | 0.00 | 0.00 | 5.14 |
3226 | 13043 | 6.662414 | TTGTGCTTATTGTTCTCTTATCCG | 57.338 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
3227 | 13044 | 7.917505 | CCATTTGTGCTTATTGTTCTCTTATCC | 59.082 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
3228 | 13045 | 8.462016 | ACCATTTGTGCTTATTGTTCTCTTATC | 58.538 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
3233 | 13050 | 6.908825 | TGTACCATTTGTGCTTATTGTTCTC | 58.091 | 36.000 | 0.00 | 0.00 | 0.00 | 2.87 |
3254 | 13071 | 8.240682 | GGTTCTTGCACATGTACAAATATTGTA | 58.759 | 33.333 | 12.47 | 0.00 | 43.27 | 2.41 |
3268 | 13085 | 2.957402 | TTCTGGAGGTTCTTGCACAT | 57.043 | 45.000 | 0.00 | 0.00 | 0.00 | 3.21 |
3389 | 13206 | 2.550830 | AGTTGGTAAGGTGCTGAGTG | 57.449 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3390 | 13207 | 2.028020 | GCTAGTTGGTAAGGTGCTGAGT | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3391 | 13208 | 2.028112 | TGCTAGTTGGTAAGGTGCTGAG | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
3392 | 13209 | 1.974957 | TGCTAGTTGGTAAGGTGCTGA | 59.025 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
3393 | 13210 | 2.350522 | CTGCTAGTTGGTAAGGTGCTG | 58.649 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
3394 | 13211 | 1.339151 | GCTGCTAGTTGGTAAGGTGCT | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
3395 | 13212 | 1.087501 | GCTGCTAGTTGGTAAGGTGC | 58.912 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3396 | 13213 | 2.472695 | TGCTGCTAGTTGGTAAGGTG | 57.527 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3397 | 13214 | 2.552373 | GGTTGCTGCTAGTTGGTAAGGT | 60.552 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
3398 | 13215 | 2.084546 | GGTTGCTGCTAGTTGGTAAGG | 58.915 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
3399 | 13216 | 2.484264 | GTGGTTGCTGCTAGTTGGTAAG | 59.516 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
3400 | 13217 | 2.158740 | TGTGGTTGCTGCTAGTTGGTAA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
3401 | 13218 | 1.418264 | TGTGGTTGCTGCTAGTTGGTA | 59.582 | 47.619 | 0.00 | 0.00 | 0.00 | 3.25 |
3402 | 13219 | 0.182537 | TGTGGTTGCTGCTAGTTGGT | 59.817 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3403 | 13220 | 1.267806 | CTTGTGGTTGCTGCTAGTTGG | 59.732 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
3404 | 13221 | 1.949525 | ACTTGTGGTTGCTGCTAGTTG | 59.050 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
3405 | 13222 | 1.949525 | CACTTGTGGTTGCTGCTAGTT | 59.050 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
3406 | 13223 | 1.597742 | CACTTGTGGTTGCTGCTAGT | 58.402 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3407 | 13224 | 0.877071 | CCACTTGTGGTTGCTGCTAG | 59.123 | 55.000 | 11.39 | 0.00 | 0.00 | 3.42 |
3408 | 13225 | 1.172180 | GCCACTTGTGGTTGCTGCTA | 61.172 | 55.000 | 19.47 | 0.00 | 34.27 | 3.49 |
3409 | 13226 | 2.492773 | GCCACTTGTGGTTGCTGCT | 61.493 | 57.895 | 19.47 | 0.00 | 34.27 | 4.24 |
3410 | 13227 | 2.028043 | GCCACTTGTGGTTGCTGC | 59.972 | 61.111 | 19.47 | 0.00 | 34.27 | 5.25 |
3411 | 13228 | 0.249155 | CTTGCCACTTGTGGTTGCTG | 60.249 | 55.000 | 19.47 | 4.43 | 37.46 | 4.41 |
3412 | 13229 | 0.395586 | TCTTGCCACTTGTGGTTGCT | 60.396 | 50.000 | 19.47 | 0.00 | 37.46 | 3.91 |
3413 | 13230 | 0.459489 | TTCTTGCCACTTGTGGTTGC | 59.541 | 50.000 | 19.47 | 7.45 | 37.14 | 4.17 |
3414 | 13231 | 2.929398 | GTTTTCTTGCCACTTGTGGTTG | 59.071 | 45.455 | 19.47 | 10.80 | 0.00 | 3.77 |
3415 | 13232 | 2.093711 | GGTTTTCTTGCCACTTGTGGTT | 60.094 | 45.455 | 19.47 | 0.00 | 0.00 | 3.67 |
3416 | 13233 | 1.480545 | GGTTTTCTTGCCACTTGTGGT | 59.519 | 47.619 | 19.47 | 0.00 | 0.00 | 4.16 |
3417 | 13234 | 1.480137 | TGGTTTTCTTGCCACTTGTGG | 59.520 | 47.619 | 14.94 | 14.94 | 0.00 | 4.17 |
3418 | 13235 | 2.957491 | TGGTTTTCTTGCCACTTGTG | 57.043 | 45.000 | 0.00 | 0.00 | 0.00 | 3.33 |
3424 | 13241 | 3.685139 | TGTTTTGTGGTTTTCTTGCCA | 57.315 | 38.095 | 0.00 | 0.00 | 0.00 | 4.92 |
3425 | 13242 | 4.454161 | ACTTTGTTTTGTGGTTTTCTTGCC | 59.546 | 37.500 | 0.00 | 0.00 | 0.00 | 4.52 |
3426 | 13243 | 5.605564 | ACTTTGTTTTGTGGTTTTCTTGC | 57.394 | 34.783 | 0.00 | 0.00 | 0.00 | 4.01 |
3427 | 13244 | 9.540431 | CATTAACTTTGTTTTGTGGTTTTCTTG | 57.460 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
3428 | 13245 | 8.233868 | GCATTAACTTTGTTTTGTGGTTTTCTT | 58.766 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
3429 | 13246 | 7.389053 | TGCATTAACTTTGTTTTGTGGTTTTCT | 59.611 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
3430 | 13247 | 7.522374 | TGCATTAACTTTGTTTTGTGGTTTTC | 58.478 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
3431 | 13248 | 7.389053 | TCTGCATTAACTTTGTTTTGTGGTTTT | 59.611 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
3432 | 13249 | 6.876257 | TCTGCATTAACTTTGTTTTGTGGTTT | 59.124 | 30.769 | 0.00 | 0.00 | 0.00 | 3.27 |
3433 | 13250 | 6.402222 | TCTGCATTAACTTTGTTTTGTGGTT | 58.598 | 32.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3434 | 13251 | 5.971763 | TCTGCATTAACTTTGTTTTGTGGT | 58.028 | 33.333 | 0.00 | 0.00 | 0.00 | 4.16 |
3435 | 13252 | 7.481275 | AATCTGCATTAACTTTGTTTTGTGG | 57.519 | 32.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3437 | 13254 | 9.762933 | ACATAATCTGCATTAACTTTGTTTTGT | 57.237 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
3441 | 13258 | 9.855021 | GGTAACATAATCTGCATTAACTTTGTT | 57.145 | 29.630 | 0.00 | 0.00 | 32.47 | 2.83 |
3442 | 13259 | 9.243105 | AGGTAACATAATCTGCATTAACTTTGT | 57.757 | 29.630 | 0.00 | 0.00 | 41.41 | 2.83 |
3445 | 13262 | 8.612619 | CGAAGGTAACATAATCTGCATTAACTT | 58.387 | 33.333 | 4.38 | 4.38 | 35.89 | 2.66 |
3446 | 13263 | 7.985184 | TCGAAGGTAACATAATCTGCATTAACT | 59.015 | 33.333 | 0.00 | 0.00 | 41.41 | 2.24 |
3447 | 13264 | 8.138365 | TCGAAGGTAACATAATCTGCATTAAC | 57.862 | 34.615 | 0.00 | 0.00 | 41.41 | 2.01 |
3448 | 13265 | 8.902540 | ATCGAAGGTAACATAATCTGCATTAA | 57.097 | 30.769 | 0.00 | 0.00 | 41.41 | 1.40 |
3449 | 13266 | 9.990360 | TTATCGAAGGTAACATAATCTGCATTA | 57.010 | 29.630 | 0.00 | 0.00 | 41.41 | 1.90 |
3450 | 13267 | 8.774586 | GTTATCGAAGGTAACATAATCTGCATT | 58.225 | 33.333 | 0.00 | 0.00 | 41.41 | 3.56 |
3451 | 13268 | 7.387948 | GGTTATCGAAGGTAACATAATCTGCAT | 59.612 | 37.037 | 9.07 | 0.00 | 41.41 | 3.96 |
3452 | 13269 | 6.704493 | GGTTATCGAAGGTAACATAATCTGCA | 59.296 | 38.462 | 9.07 | 0.00 | 41.41 | 4.41 |
3453 | 13270 | 6.929606 | AGGTTATCGAAGGTAACATAATCTGC | 59.070 | 38.462 | 9.07 | 0.00 | 41.41 | 4.26 |
3458 | 13275 | 8.086522 | GCTCATAGGTTATCGAAGGTAACATAA | 58.913 | 37.037 | 9.07 | 0.00 | 33.65 | 1.90 |
3459 | 13276 | 7.450634 | AGCTCATAGGTTATCGAAGGTAACATA | 59.549 | 37.037 | 9.07 | 6.91 | 41.41 | 2.29 |
3460 | 13277 | 6.267928 | AGCTCATAGGTTATCGAAGGTAACAT | 59.732 | 38.462 | 9.07 | 5.12 | 41.41 | 2.71 |
3461 | 13278 | 5.597182 | AGCTCATAGGTTATCGAAGGTAACA | 59.403 | 40.000 | 9.07 | 0.00 | 41.41 | 2.41 |
3462 | 13279 | 5.921408 | CAGCTCATAGGTTATCGAAGGTAAC | 59.079 | 44.000 | 0.00 | 0.00 | 0.00 | 2.50 |
3463 | 13280 | 5.509163 | GCAGCTCATAGGTTATCGAAGGTAA | 60.509 | 44.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3464 | 13281 | 4.022242 | GCAGCTCATAGGTTATCGAAGGTA | 60.022 | 45.833 | 0.00 | 0.00 | 0.00 | 3.08 |
3465 | 13282 | 3.243907 | GCAGCTCATAGGTTATCGAAGGT | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 3.50 |
3466 | 13283 | 3.006323 | AGCAGCTCATAGGTTATCGAAGG | 59.994 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
3467 | 13284 | 4.022416 | AGAGCAGCTCATAGGTTATCGAAG | 60.022 | 45.833 | 24.64 | 0.00 | 32.06 | 3.79 |
3468 | 13285 | 3.891977 | AGAGCAGCTCATAGGTTATCGAA | 59.108 | 43.478 | 24.64 | 0.00 | 32.06 | 3.71 |
3469 | 13286 | 3.491342 | AGAGCAGCTCATAGGTTATCGA | 58.509 | 45.455 | 24.64 | 0.00 | 32.06 | 3.59 |
3470 | 13287 | 3.832276 | GAGAGCAGCTCATAGGTTATCG | 58.168 | 50.000 | 24.64 | 0.00 | 43.38 | 2.92 |
3481 | 13298 | 1.408340 | TCAGCAGTATGAGAGCAGCTC | 59.592 | 52.381 | 15.25 | 15.25 | 44.21 | 4.09 |
3482 | 13299 | 1.482954 | TCAGCAGTATGAGAGCAGCT | 58.517 | 50.000 | 0.00 | 0.00 | 39.69 | 4.24 |
3483 | 13300 | 1.932511 | GTTCAGCAGTATGAGAGCAGC | 59.067 | 52.381 | 0.00 | 0.00 | 39.69 | 5.25 |
3484 | 13301 | 2.093816 | TGGTTCAGCAGTATGAGAGCAG | 60.094 | 50.000 | 0.00 | 0.00 | 39.69 | 4.24 |
3485 | 13302 | 1.901833 | TGGTTCAGCAGTATGAGAGCA | 59.098 | 47.619 | 0.00 | 0.00 | 39.69 | 4.26 |
3486 | 13303 | 2.680312 | TGGTTCAGCAGTATGAGAGC | 57.320 | 50.000 | 0.00 | 0.00 | 39.69 | 4.09 |
3493 | 13310 | 1.885887 | GTGCCATTTGGTTCAGCAGTA | 59.114 | 47.619 | 0.00 | 0.00 | 37.57 | 2.74 |
3496 | 13313 | 1.659233 | CGTGCCATTTGGTTCAGCA | 59.341 | 52.632 | 0.00 | 0.00 | 37.57 | 4.41 |
3503 | 13320 | 3.439494 | CAAATCCCGTGCCATTTGG | 57.561 | 52.632 | 0.00 | 0.00 | 36.66 | 3.28 |
3537 | 13354 | 7.197703 | TGATTCGTATATGTTTCGAGCTTACA | 58.802 | 34.615 | 0.00 | 0.00 | 35.13 | 2.41 |
3593 | 13410 | 1.302366 | CGTATCAGCCATGCACACAT | 58.698 | 50.000 | 0.00 | 0.00 | 36.79 | 3.21 |
3704 | 13521 | 4.461081 | GTGGGCACTGGATTAATGTGTTAA | 59.539 | 41.667 | 0.00 | 0.00 | 34.50 | 2.01 |
3822 | 13639 | 3.153369 | TGATGTTAGTGGCACAATGGT | 57.847 | 42.857 | 21.41 | 0.31 | 44.16 | 3.55 |
3835 | 13652 | 2.062636 | GCCCCCTTCCCTATGATGTTA | 58.937 | 52.381 | 0.00 | 0.00 | 0.00 | 2.41 |
3843 | 13660 | 3.961651 | TGGTGGCCCCCTTCCCTA | 61.962 | 66.667 | 5.62 | 0.00 | 0.00 | 3.53 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.