Multiple sequence alignment - TraesCS7B01G402200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G402200 chr7B 100.000 9423 0 0 1 9423 668906244 668915666 0.000000e+00 17402.0
1 TraesCS7B01G402200 chr7B 86.909 1291 86 32 453 1731 668931149 668929930 0.000000e+00 1371.0
2 TraesCS7B01G402200 chr7B 88.866 979 73 16 734 1692 669141716 669140754 0.000000e+00 1171.0
3 TraesCS7B01G402200 chr7B 100.000 248 0 0 7485 7732 668908912 668909159 8.620000e-125 459.0
4 TraesCS7B01G402200 chr7B 100.000 248 0 0 2669 2916 668913728 668913975 8.620000e-125 459.0
5 TraesCS7B01G402200 chr7B 73.110 807 191 24 5090 5883 639388832 639389625 2.020000e-66 265.0
6 TraesCS7B01G402200 chr7B 83.516 273 29 11 481 742 669175049 669174782 3.400000e-59 241.0
7 TraesCS7B01G402200 chr7B 79.718 355 52 10 8015 8358 669139804 669139459 1.220000e-58 239.0
8 TraesCS7B01G402200 chr7B 93.182 44 3 0 441 484 669175412 669175369 2.200000e-06 65.8
9 TraesCS7B01G402200 chr7B 87.719 57 3 3 2288 2344 668929538 668929486 7.900000e-06 63.9
10 TraesCS7B01G402200 chr7B 86.792 53 3 3 2292 2344 669140377 669140329 1.000000e-03 56.5
11 TraesCS7B01G402200 chr7A 98.427 5086 55 5 2669 7739 680525746 680520671 0.000000e+00 8925.0
12 TraesCS7B01G402200 chr7A 86.273 1457 142 31 7733 9161 685228838 685227412 0.000000e+00 1530.0
13 TraesCS7B01G402200 chr7A 86.176 1331 89 39 435 1683 685231310 685229993 0.000000e+00 1351.0
14 TraesCS7B01G402200 chr7A 88.482 929 60 14 810 1729 685212497 685213387 0.000000e+00 1079.0
15 TraesCS7B01G402200 chr7A 85.543 920 69 33 798 1703 685089965 685090834 0.000000e+00 904.0
16 TraesCS7B01G402200 chr7A 85.263 760 95 9 947 1705 684292500 684293243 0.000000e+00 767.0
17 TraesCS7B01G402200 chr7A 79.943 703 98 26 7733 8424 685214044 685214714 2.380000e-130 477.0
18 TraesCS7B01G402200 chr7A 99.600 250 1 0 2669 2918 680520924 680520675 3.100000e-124 457.0
19 TraesCS7B01G402200 chr7A 98.795 249 2 1 7485 7732 680525746 680525498 8.680000e-120 442.0
20 TraesCS7B01G402200 chr7A 79.542 655 51 41 1732 2357 685229634 685229034 3.190000e-104 390.0
21 TraesCS7B01G402200 chr7A 85.445 371 40 8 419 786 685212155 685212514 3.210000e-99 374.0
22 TraesCS7B01G402200 chr7A 80.711 394 59 12 8035 8424 685095458 685095838 3.330000e-74 291.0
23 TraesCS7B01G402200 chr7A 96.154 78 1 2 700 776 685089912 685089988 9.930000e-25 126.0
24 TraesCS7B01G402200 chr2D 95.806 5079 138 23 2669 7733 591698371 591693354 0.000000e+00 8130.0
25 TraesCS7B01G402200 chr2D 95.187 187 9 0 2348 2534 589508604 589508790 7.150000e-76 296.0
26 TraesCS7B01G402200 chr2D 87.550 249 7 8 2669 2916 591693580 591693355 5.610000e-67 267.0
27 TraesCS7B01G402200 chr5D 95.592 5059 115 30 2689 7732 486218155 486223120 0.000000e+00 8008.0
28 TraesCS7B01G402200 chr5D 88.755 249 4 8 2669 2916 486222895 486223120 5.570000e-72 283.0
29 TraesCS7B01G402200 chr2A 98.195 3879 47 1 2669 6547 27518375 27514520 0.000000e+00 6754.0
30 TraesCS7B01G402200 chr2A 96.649 1164 7 2 6579 7733 27514530 27513390 0.000000e+00 1905.0
31 TraesCS7B01G402200 chr2A 88.262 869 42 26 7903 8734 737478901 737478056 0.000000e+00 985.0
32 TraesCS7B01G402200 chr2A 88.480 408 28 12 8732 9130 737477896 737477499 8.560000e-130 475.0
33 TraesCS7B01G402200 chr2A 90.400 250 1 1 7483 7732 27518377 27518151 3.310000e-79 307.0
34 TraesCS7B01G402200 chr2A 90.323 248 1 1 2669 2916 27513615 27513391 4.280000e-78 303.0
35 TraesCS7B01G402200 chr2A 97.959 49 1 0 9334 9382 737477488 737477440 1.690000e-12 86.1
36 TraesCS7B01G402200 chr2B 97.862 3883 57 4 2669 6550 281809046 281812903 0.000000e+00 6687.0
37 TraesCS7B01G402200 chr2B 95.295 1169 23 3 6573 7732 281812878 281814023 0.000000e+00 1825.0
38 TraesCS7B01G402200 chr2B 86.853 1004 62 31 7903 8859 227683555 227682575 0.000000e+00 1059.0
39 TraesCS7B01G402200 chr2B 91.795 585 26 7 8815 9382 227682583 227682004 0.000000e+00 795.0
40 TraesCS7B01G402200 chr2B 96.296 189 7 0 2347 2535 801141537 801141349 2.560000e-80 311.0
41 TraesCS7B01G402200 chr2B 94.898 196 8 2 2343 2537 89545325 89545519 1.190000e-78 305.0
42 TraesCS7B01G402200 chr2B 89.919 248 2 1 7485 7732 281809046 281809270 1.990000e-76 298.0
43 TraesCS7B01G402200 chr4A 93.973 4065 163 20 3684 7733 215041523 215045520 0.000000e+00 6074.0
44 TraesCS7B01G402200 chr4A 93.536 1021 42 6 2669 3689 215030621 215031617 0.000000e+00 1498.0
45 TraesCS7B01G402200 chr4A 96.316 190 6 1 2344 2533 662620984 662621172 2.560000e-80 311.0
46 TraesCS7B01G402200 chr4A 98.844 173 2 0 2358 2530 646994648 646994820 9.190000e-80 309.0
47 TraesCS7B01G402200 chr5A 79.877 2609 433 52 4950 7491 77338220 77340803 0.000000e+00 1825.0
48 TraesCS7B01G402200 chr5A 86.572 1415 183 3 2897 4307 77336318 77337729 0.000000e+00 1554.0
49 TraesCS7B01G402200 chr3B 84.977 1724 249 4 2897 4613 771769875 771771595 0.000000e+00 1740.0
50 TraesCS7B01G402200 chr3B 79.064 2608 439 55 4950 7491 771771980 771774546 0.000000e+00 1692.0
51 TraesCS7B01G402200 chr3B 97.753 178 4 0 2351 2528 15974171 15973994 3.310000e-79 307.0
52 TraesCS7B01G402200 chr6B 89.132 1371 71 24 8066 9382 265822700 265821354 0.000000e+00 1635.0
53 TraesCS7B01G402200 chr6B 96.648 179 5 1 2356 2534 713829814 713829637 7.150000e-76 296.0
54 TraesCS7B01G402200 chr7D 92.321 1120 40 16 806 1909 592860385 592859296 0.000000e+00 1550.0
55 TraesCS7B01G402200 chr7D 89.328 1087 59 14 7733 8798 592858660 592857610 0.000000e+00 1312.0
56 TraesCS7B01G402200 chr7D 89.266 885 64 9 806 1690 592677218 592678071 0.000000e+00 1079.0
57 TraesCS7B01G402200 chr7D 90.805 783 61 7 4 782 592861241 592860466 0.000000e+00 1037.0
58 TraesCS7B01G402200 chr7D 88.352 704 39 8 982 1683 592816335 592816997 0.000000e+00 806.0
59 TraesCS7B01G402200 chr7D 86.505 741 87 5 983 1723 592632301 592633028 0.000000e+00 802.0
60 TraesCS7B01G402200 chr7D 92.176 409 21 8 8794 9192 592857519 592857112 1.370000e-157 568.0
61 TraesCS7B01G402200 chr7D 85.283 530 56 15 406 929 592815829 592816342 2.330000e-145 527.0
62 TraesCS7B01G402200 chr7D 85.194 412 35 13 1957 2357 592859282 592858886 5.300000e-107 399.0
63 TraesCS7B01G402200 chr7D 78.150 627 90 23 7733 8358 592818770 592819350 1.160000e-93 355.0
64 TraesCS7B01G402200 chr7D 84.520 323 29 14 435 742 592675530 592675846 5.530000e-77 300.0
65 TraesCS7B01G402200 chr7D 94.152 171 4 4 9218 9382 592857115 592856945 1.210000e-63 255.0
66 TraesCS7B01G402200 chr7D 85.938 64 3 5 2281 2344 592678706 592678763 7.900000e-06 63.9
67 TraesCS7B01G402200 chr7D 87.719 57 3 3 2288 2344 592818573 592818625 7.900000e-06 63.9
68 TraesCS7B01G402200 chr6A 81.839 1718 304 8 2904 4617 555463903 555465616 0.000000e+00 1437.0
69 TraesCS7B01G402200 chr1A 91.733 375 9 6 9022 9382 544193551 544193185 1.410000e-137 501.0
70 TraesCS7B01G402200 chr1A 85.882 425 34 15 7903 8315 544193981 544193571 6.760000e-116 429.0
71 TraesCS7B01G402200 chrUn 86.998 423 49 6 5688 6107 476735791 476735372 1.110000e-128 472.0
72 TraesCS7B01G402200 chr5B 98.295 176 3 0 2358 2533 309814021 309813846 9.190000e-80 309.0
73 TraesCS7B01G402200 chr5B 94.792 192 7 3 2346 2535 680850973 680850783 7.150000e-76 296.0
74 TraesCS7B01G402200 chr4B 93.467 199 9 4 2339 2536 666668267 666668462 9.260000e-75 292.0
75 TraesCS7B01G402200 chr4B 92.965 199 10 4 2339 2536 666704882 666705077 4.310000e-73 287.0
76 TraesCS7B01G402200 chr1D 90.541 148 8 2 1276 1423 391223243 391223102 3.470000e-44 191.0
77 TraesCS7B01G402200 chr1D 71.059 812 215 18 5082 5883 223775508 223774707 7.520000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G402200 chr7B 668906244 668915666 9422 False 17402.000000 17402 100.000000 1 9423 1 chr7B.!!$F2 9422
1 TraesCS7B01G402200 chr7B 668929486 668931149 1663 True 717.450000 1371 87.314000 453 2344 2 chr7B.!!$R1 1891
2 TraesCS7B01G402200 chr7B 669139459 669141716 2257 True 488.833333 1171 85.125333 734 8358 3 chr7B.!!$R2 7624
3 TraesCS7B01G402200 chr7B 639388832 639389625 793 False 265.000000 265 73.110000 5090 5883 1 chr7B.!!$F1 793
4 TraesCS7B01G402200 chr7A 680520671 680525746 5075 True 8925.000000 8925 98.427000 2669 7739 1 chr7A.!!$R1 5070
5 TraesCS7B01G402200 chr7A 685227412 685231310 3898 True 1090.333333 1530 83.997000 435 9161 3 chr7A.!!$R4 8726
6 TraesCS7B01G402200 chr7A 684292500 684293243 743 False 767.000000 767 85.263000 947 1705 1 chr7A.!!$F1 758
7 TraesCS7B01G402200 chr7A 685212155 685214714 2559 False 643.333333 1079 84.623333 419 8424 3 chr7A.!!$F4 8005
8 TraesCS7B01G402200 chr7A 685089912 685090834 922 False 515.000000 904 90.848500 700 1703 2 chr7A.!!$F3 1003
9 TraesCS7B01G402200 chr2D 591693354 591698371 5017 True 8130.000000 8130 95.806000 2669 7733 1 chr2D.!!$R1 5064
10 TraesCS7B01G402200 chr5D 486218155 486223120 4965 False 4145.500000 8008 92.173500 2669 7732 2 chr5D.!!$F1 5063
11 TraesCS7B01G402200 chr2A 27513390 27518377 4987 True 2317.250000 6754 93.891750 2669 7733 4 chr2A.!!$R1 5064
12 TraesCS7B01G402200 chr2A 737477440 737478901 1461 True 515.366667 985 91.567000 7903 9382 3 chr2A.!!$R2 1479
13 TraesCS7B01G402200 chr2B 281809046 281814023 4977 False 2936.666667 6687 94.358667 2669 7732 3 chr2B.!!$F2 5063
14 TraesCS7B01G402200 chr2B 227682004 227683555 1551 True 927.000000 1059 89.324000 7903 9382 2 chr2B.!!$R2 1479
15 TraesCS7B01G402200 chr4A 215041523 215045520 3997 False 6074.000000 6074 93.973000 3684 7733 1 chr4A.!!$F2 4049
16 TraesCS7B01G402200 chr4A 215030621 215031617 996 False 1498.000000 1498 93.536000 2669 3689 1 chr4A.!!$F1 1020
17 TraesCS7B01G402200 chr5A 77336318 77340803 4485 False 1689.500000 1825 83.224500 2897 7491 2 chr5A.!!$F1 4594
18 TraesCS7B01G402200 chr3B 771769875 771774546 4671 False 1716.000000 1740 82.020500 2897 7491 2 chr3B.!!$F1 4594
19 TraesCS7B01G402200 chr6B 265821354 265822700 1346 True 1635.000000 1635 89.132000 8066 9382 1 chr6B.!!$R1 1316
20 TraesCS7B01G402200 chr7D 592856945 592861241 4296 True 853.500000 1550 90.662667 4 9382 6 chr7D.!!$R1 9378
21 TraesCS7B01G402200 chr7D 592632301 592633028 727 False 802.000000 802 86.505000 983 1723 1 chr7D.!!$F1 740
22 TraesCS7B01G402200 chr7D 592675530 592678763 3233 False 480.966667 1079 86.574667 435 2344 3 chr7D.!!$F2 1909
23 TraesCS7B01G402200 chr7D 592815829 592819350 3521 False 437.975000 806 84.876000 406 8358 4 chr7D.!!$F3 7952
24 TraesCS7B01G402200 chr6A 555463903 555465616 1713 False 1437.000000 1437 81.839000 2904 4617 1 chr6A.!!$F1 1713
25 TraesCS7B01G402200 chr1A 544193185 544193981 796 True 465.000000 501 88.807500 7903 9382 2 chr1A.!!$R1 1479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 385 0.108963 AAAAATGTCGGGACCGTCCA 59.891 50.000 19.43 9.20 38.64 4.02 F
573 601 0.625316 ATAGCCCATGCAAGTGTCCA 59.375 50.000 0.00 0.00 41.13 4.02 F
574 602 0.625316 TAGCCCATGCAAGTGTCCAT 59.375 50.000 0.00 0.00 41.13 3.41 F
1932 3698 0.939419 CTTTGTGCAAAAGCAAGCCC 59.061 50.000 7.96 0.00 0.00 5.19 F
2314 5272 0.179174 GACCAATGTTTTAGCGGCCG 60.179 55.000 24.05 24.05 0.00 6.13 F
2315 5273 0.891904 ACCAATGTTTTAGCGGCCGT 60.892 50.000 28.70 16.08 0.00 5.68 F
2440 5438 0.973632 AGATACAACCCACGTCAGCA 59.026 50.000 0.00 0.00 0.00 4.41 F
2441 5439 1.076332 GATACAACCCACGTCAGCAC 58.924 55.000 0.00 0.00 0.00 4.40 F
2453 5451 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10 F
7756 11111 1.867615 CTCACCGAGTTCGACGAGT 59.132 57.895 2.59 0.00 43.02 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1826 3591 0.039165 GAAAAGGCCAACAGCTTCCG 60.039 55.000 5.01 0.0 43.05 4.30 R
2188 5146 0.047176 TCCCTCCTCTCCTCTCCTCT 59.953 60.000 0.00 0.0 0.00 3.69 R
2190 5148 0.047176 TCTCCCTCCTCTCCTCTCCT 59.953 60.000 0.00 0.0 0.00 3.69 R
2791 5919 5.552870 ATTATAACGTGGAGATCAAGCCT 57.447 39.130 0.00 0.0 0.00 4.58 R
4732 7947 2.267006 CTGGTGCAGAGGCGACAT 59.733 61.111 0.00 0.0 45.35 3.06 R
5348 8591 6.966534 AAAGTCATTCAATCTCAAACACCT 57.033 33.333 0.00 0.0 0.00 4.00 R
6338 9585 1.078072 AGCAACCAACCACGTCACA 60.078 52.632 0.00 0.0 0.00 3.58 R
6752 10098 2.125106 AATCTCGTCGCCAAGGGC 60.125 61.111 0.00 0.0 46.75 5.19 R
7758 11113 1.153469 CTTCCGGCAGCTCCTCTTC 60.153 63.158 0.00 0.0 0.00 2.87 R
8881 12640 0.387239 CTAAAGCTTTGGGCACGCAC 60.387 55.000 22.02 0.0 44.79 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 5.211201 ACTTAAATAACTAGGGTAGGCGGA 58.789 41.667 0.00 0.00 0.00 5.54
80 81 1.234615 AACGGGTTGAATGTGGAGCG 61.235 55.000 0.00 0.00 0.00 5.03
82 83 1.971167 GGGTTGAATGTGGAGCGCA 60.971 57.895 11.47 0.00 0.00 6.09
96 97 1.395262 GAGCGCAGGAGTAAGCTTTTC 59.605 52.381 11.47 2.98 40.39 2.29
104 105 2.003301 GAGTAAGCTTTTCAGGCTCCG 58.997 52.381 3.20 0.00 39.30 4.63
105 106 0.448197 GTAAGCTTTTCAGGCTCCGC 59.552 55.000 3.20 0.00 39.30 5.54
106 107 1.019278 TAAGCTTTTCAGGCTCCGCG 61.019 55.000 3.20 0.00 39.30 6.46
107 108 2.731691 AAGCTTTTCAGGCTCCGCGA 62.732 55.000 8.23 0.00 39.30 5.87
113 114 4.147449 CAGGCTCCGCGATGGTGA 62.147 66.667 8.23 0.00 39.52 4.02
154 155 1.355563 CGCTCAGCTGGCATGAATG 59.644 57.895 21.86 5.81 0.00 2.67
189 190 0.388520 TCACGTCCACTCTGAATGCG 60.389 55.000 0.00 0.00 0.00 4.73
197 198 1.134580 CACTCTGAATGCGTGGAGGAT 60.135 52.381 8.15 0.00 0.00 3.24
203 205 0.537188 AATGCGTGGAGGATTCTCGT 59.463 50.000 0.00 0.00 35.99 4.18
207 209 1.519455 GTGGAGGATTCTCGTGGCG 60.519 63.158 0.00 0.00 40.85 5.69
208 210 2.586357 GGAGGATTCTCGTGGCGC 60.586 66.667 0.00 0.00 40.85 6.53
214 216 3.417275 ATTCTCGTGGCGCGGAGAG 62.417 63.158 21.40 17.45 41.72 3.20
237 239 3.662290 TTTTTCGATGGGTCCAGGG 57.338 52.632 0.00 0.00 0.00 4.45
296 299 3.945640 AACCTACCCTCAGTTTGTGTT 57.054 42.857 0.00 0.00 0.00 3.32
313 316 3.243035 TGTGTTGGTTTGCGAGAATTCAG 60.243 43.478 8.44 2.35 0.00 3.02
315 318 3.003275 TGTTGGTTTGCGAGAATTCAGAC 59.997 43.478 8.44 0.00 0.00 3.51
316 319 3.126001 TGGTTTGCGAGAATTCAGACT 57.874 42.857 8.44 0.00 0.00 3.24
322 325 2.562738 TGCGAGAATTCAGACTTCTGGA 59.437 45.455 14.42 0.00 43.91 3.86
344 347 5.588648 GGATCGGTCTGGACAAATTTAATGA 59.411 40.000 0.00 0.00 0.00 2.57
356 359 5.245075 ACAAATTTAATGACCGTGGTTGGAT 59.755 36.000 0.00 0.00 0.00 3.41
358 361 3.426787 TTAATGACCGTGGTTGGATGT 57.573 42.857 0.00 0.00 0.00 3.06
359 362 1.533625 AATGACCGTGGTTGGATGTG 58.466 50.000 0.00 0.00 0.00 3.21
360 363 0.690192 ATGACCGTGGTTGGATGTGA 59.310 50.000 0.00 0.00 0.00 3.58
361 364 0.690192 TGACCGTGGTTGGATGTGAT 59.310 50.000 0.00 0.00 0.00 3.06
365 368 3.754323 GACCGTGGTTGGATGTGATAAAA 59.246 43.478 0.00 0.00 0.00 1.52
382 385 0.108963 AAAAATGTCGGGACCGTCCA 59.891 50.000 19.43 9.20 38.64 4.02
445 448 3.251004 GTGGTTGCTCTAGGAACACAAAG 59.749 47.826 15.04 0.00 46.34 2.77
524 527 5.660629 TCACATTTTGATTTTGCAAGCAG 57.339 34.783 0.00 0.00 27.73 4.24
572 600 1.027357 CATAGCCCATGCAAGTGTCC 58.973 55.000 0.00 0.00 41.13 4.02
573 601 0.625316 ATAGCCCATGCAAGTGTCCA 59.375 50.000 0.00 0.00 41.13 4.02
574 602 0.625316 TAGCCCATGCAAGTGTCCAT 59.375 50.000 0.00 0.00 41.13 3.41
575 603 0.968901 AGCCCATGCAAGTGTCCATG 60.969 55.000 0.00 0.00 41.13 3.66
801 2154 1.549170 CCCTCTACACCACAGTACACC 59.451 57.143 0.00 0.00 0.00 4.16
870 2236 1.683441 CCCTCCACCACCTTACACC 59.317 63.158 0.00 0.00 0.00 4.16
881 2257 0.955428 CCTTACACCGCACAGCACAT 60.955 55.000 0.00 0.00 0.00 3.21
897 2273 4.510711 CAGCACATCCTCACTGATTCATAC 59.489 45.833 0.00 0.00 31.67 2.39
898 2274 4.162888 AGCACATCCTCACTGATTCATACA 59.837 41.667 0.00 0.00 0.00 2.29
899 2275 4.510711 GCACATCCTCACTGATTCATACAG 59.489 45.833 0.00 0.00 40.68 2.74
900 2276 4.510711 CACATCCTCACTGATTCATACAGC 59.489 45.833 0.00 0.00 38.74 4.40
938 2343 2.669569 CCAACCACACGCCTCCTG 60.670 66.667 0.00 0.00 0.00 3.86
940 2345 3.168528 AACCACACGCCTCCTGGT 61.169 61.111 0.00 0.00 40.17 4.00
941 2346 3.178540 AACCACACGCCTCCTGGTC 62.179 63.158 0.00 0.00 37.30 4.02
942 2347 4.394712 CCACACGCCTCCTGGTCC 62.395 72.222 0.00 0.00 35.27 4.46
943 2348 3.314331 CACACGCCTCCTGGTCCT 61.314 66.667 0.00 0.00 35.27 3.85
944 2349 1.982395 CACACGCCTCCTGGTCCTA 60.982 63.158 0.00 0.00 35.27 2.94
1708 3175 2.750350 CACACACCCACTCCCTCC 59.250 66.667 0.00 0.00 0.00 4.30
1795 3558 1.931635 AGCCCAGTATAGCTAGAGCC 58.068 55.000 0.00 0.00 43.38 4.70
1805 3568 1.197430 AGCTAGAGCCAGGTTGCAGT 61.197 55.000 0.00 0.00 43.38 4.40
1826 3591 3.561241 GCTAGGGGTAGGGCCAGC 61.561 72.222 6.18 0.00 39.65 4.85
1868 3634 3.326210 GCGCTCTGATTCGGCTCG 61.326 66.667 0.00 3.02 0.00 5.03
1871 3637 2.520904 GCTCTGATTCGGCTCGTGC 61.521 63.158 0.00 0.00 38.76 5.34
1906 3672 2.348888 GCAGCCATGGCAAAGCTCT 61.349 57.895 37.18 13.31 44.88 4.09
1910 3676 1.511305 CCATGGCAAAGCTCTGCTG 59.489 57.895 12.63 2.95 42.25 4.41
1914 3680 1.303155 GGCAAAGCTCTGCTGTCCT 60.303 57.895 12.63 0.00 42.25 3.85
1932 3698 0.939419 CTTTGTGCAAAAGCAAGCCC 59.061 50.000 7.96 0.00 0.00 5.19
1935 3701 1.957695 GTGCAAAAGCAAGCCCAGC 60.958 57.895 0.00 0.00 0.00 4.85
1938 3704 1.080974 CAAAAGCAAGCCCAGCTCG 60.081 57.895 0.00 0.00 42.53 5.03
1939 3705 2.270986 AAAAGCAAGCCCAGCTCGG 61.271 57.895 0.00 0.00 42.53 4.63
2043 3818 3.006323 GGAGTACTAGGTCATGCTCATGG 59.994 52.174 9.69 0.00 39.24 3.66
2045 3820 2.996249 ACTAGGTCATGCTCATGGTG 57.004 50.000 9.69 0.00 39.24 4.17
2047 3822 1.764723 CTAGGTCATGCTCATGGTGGA 59.235 52.381 9.69 0.00 39.24 4.02
2102 3884 2.259818 ATCGATCGATCAGCGGGC 59.740 61.111 24.60 0.00 41.33 6.13
2103 3885 3.617122 ATCGATCGATCAGCGGGCG 62.617 63.158 24.60 9.91 41.33 6.13
2105 3887 3.978491 GATCGATCAGCGGGCGGA 61.978 66.667 20.52 0.00 41.33 5.54
2121 5052 1.597461 GGAGACCGGAGAAAGGGTG 59.403 63.158 9.46 0.00 36.46 4.61
2183 5141 4.074526 GCAGAGCGCAGACTGGGA 62.075 66.667 22.65 0.00 41.79 4.37
2184 5142 2.183811 CAGAGCGCAGACTGGGAG 59.816 66.667 22.65 5.65 31.21 4.30
2186 5144 2.051518 AGAGCGCAGACTGGGAGAG 61.052 63.158 22.65 0.00 31.21 3.20
2187 5145 3.073735 AGCGCAGACTGGGAGAGG 61.074 66.667 22.65 0.00 31.21 3.69
2188 5146 3.071206 GCGCAGACTGGGAGAGGA 61.071 66.667 22.65 0.00 31.21 3.71
2189 5147 3.074999 GCGCAGACTGGGAGAGGAG 62.075 68.421 22.65 0.00 31.21 3.69
2190 5148 1.379176 CGCAGACTGGGAGAGGAGA 60.379 63.158 14.07 0.00 31.21 3.71
2213 5171 2.835895 GGAGAGGAGGGAGACGCC 60.836 72.222 0.00 0.00 39.70 5.68
2214 5172 2.043852 GAGAGGAGGGAGACGCCA 60.044 66.667 0.00 0.00 42.23 5.69
2215 5173 1.456705 GAGAGGAGGGAGACGCCAT 60.457 63.158 0.00 0.00 42.23 4.40
2216 5174 1.743321 GAGAGGAGGGAGACGCCATG 61.743 65.000 0.00 0.00 42.23 3.66
2217 5175 2.765807 AGGAGGGAGACGCCATGG 60.766 66.667 7.63 7.63 42.23 3.66
2218 5176 4.554036 GGAGGGAGACGCCATGGC 62.554 72.222 27.67 27.67 39.13 4.40
2219 5177 3.474570 GAGGGAGACGCCATGGCT 61.475 66.667 33.07 20.54 38.95 4.75
2220 5178 3.746949 GAGGGAGACGCCATGGCTG 62.747 68.421 33.07 26.84 38.95 4.85
2221 5179 4.864334 GGGAGACGCCATGGCTGG 62.864 72.222 33.07 21.43 46.17 4.85
2267 5225 1.727062 CCCTGACCATATCTCTGCCT 58.273 55.000 0.00 0.00 0.00 4.75
2268 5226 1.347050 CCCTGACCATATCTCTGCCTG 59.653 57.143 0.00 0.00 0.00 4.85
2269 5227 1.270732 CCTGACCATATCTCTGCCTGC 60.271 57.143 0.00 0.00 0.00 4.85
2270 5228 1.693062 CTGACCATATCTCTGCCTGCT 59.307 52.381 0.00 0.00 0.00 4.24
2271 5229 1.415289 TGACCATATCTCTGCCTGCTG 59.585 52.381 0.00 0.00 0.00 4.41
2305 5263 3.541242 TCCTCCCATTGACCAATGTTT 57.459 42.857 18.15 0.00 44.97 2.83
2312 5270 2.715737 TTGACCAATGTTTTAGCGGC 57.284 45.000 0.00 0.00 0.00 6.53
2313 5271 0.885196 TGACCAATGTTTTAGCGGCC 59.115 50.000 0.00 0.00 0.00 6.13
2314 5272 0.179174 GACCAATGTTTTAGCGGCCG 60.179 55.000 24.05 24.05 0.00 6.13
2315 5273 0.891904 ACCAATGTTTTAGCGGCCGT 60.892 50.000 28.70 16.08 0.00 5.68
2357 5355 7.037438 AGACTTTTGCATGCCAATTATAGTTG 58.963 34.615 16.68 1.10 32.49 3.16
2359 5357 4.669206 TTGCATGCCAATTATAGTTGGG 57.331 40.909 23.93 11.73 46.97 4.12
2365 5363 5.043737 TGCCAATTATAGTTGGGAGTACC 57.956 43.478 23.93 10.07 46.97 3.34
2366 5364 4.724798 TGCCAATTATAGTTGGGAGTACCT 59.275 41.667 23.93 0.00 46.97 3.08
2367 5365 5.906495 TGCCAATTATAGTTGGGAGTACCTA 59.094 40.000 23.93 0.00 46.97 3.08
2368 5366 6.042781 TGCCAATTATAGTTGGGAGTACCTAG 59.957 42.308 23.93 0.54 46.97 3.02
2369 5367 6.269307 GCCAATTATAGTTGGGAGTACCTAGA 59.731 42.308 23.93 0.00 46.97 2.43
2371 5369 8.148999 CCAATTATAGTTGGGAGTACCTAGAAC 58.851 40.741 17.19 0.00 43.94 3.01
2372 5370 8.925338 CAATTATAGTTGGGAGTACCTAGAACT 58.075 37.037 1.47 1.47 41.11 3.01
2375 5373 4.949121 AGTTGGGAGTACCTAGAACTCAT 58.051 43.478 20.28 4.85 44.25 2.90
2378 5376 5.988865 TGGGAGTACCTAGAACTCATCTA 57.011 43.478 20.28 5.84 44.25 1.98
2414 5412 8.424274 AATTTGGTCTCATTCACTTTGAAAAC 57.576 30.769 0.00 0.00 40.12 2.43
2415 5413 6.522625 TTGGTCTCATTCACTTTGAAAACA 57.477 33.333 0.00 0.00 40.12 2.83
2416 5414 6.522625 TGGTCTCATTCACTTTGAAAACAA 57.477 33.333 0.00 0.00 40.12 2.83
2418 5416 6.376864 TGGTCTCATTCACTTTGAAAACAAGA 59.623 34.615 0.00 0.00 40.12 3.02
2419 5417 7.093988 TGGTCTCATTCACTTTGAAAACAAGAA 60.094 33.333 0.00 0.00 40.12 2.52
2420 5418 7.220875 GGTCTCATTCACTTTGAAAACAAGAAC 59.779 37.037 0.00 0.00 40.12 3.01
2421 5419 7.754924 GTCTCATTCACTTTGAAAACAAGAACA 59.245 33.333 0.00 0.00 40.12 3.18
2423 5421 7.825681 TCATTCACTTTGAAAACAAGAACAGA 58.174 30.769 0.00 0.00 40.12 3.41
2425 5423 9.734620 CATTCACTTTGAAAACAAGAACAGATA 57.265 29.630 0.00 0.00 40.12 1.98
2426 5424 9.736023 ATTCACTTTGAAAACAAGAACAGATAC 57.264 29.630 0.00 0.00 40.12 2.24
2427 5425 8.275015 TCACTTTGAAAACAAGAACAGATACA 57.725 30.769 0.00 0.00 0.00 2.29
2428 5426 8.735315 TCACTTTGAAAACAAGAACAGATACAA 58.265 29.630 0.00 0.00 0.00 2.41
2430 5428 7.973944 ACTTTGAAAACAAGAACAGATACAACC 59.026 33.333 0.00 0.00 0.00 3.77
2431 5429 6.385649 TGAAAACAAGAACAGATACAACCC 57.614 37.500 0.00 0.00 0.00 4.11
2432 5430 5.888724 TGAAAACAAGAACAGATACAACCCA 59.111 36.000 0.00 0.00 0.00 4.51
2433 5431 5.767816 AAACAAGAACAGATACAACCCAC 57.232 39.130 0.00 0.00 0.00 4.61
2434 5432 3.399330 ACAAGAACAGATACAACCCACG 58.601 45.455 0.00 0.00 0.00 4.94
2435 5433 3.181458 ACAAGAACAGATACAACCCACGT 60.181 43.478 0.00 0.00 0.00 4.49
2436 5434 3.314541 AGAACAGATACAACCCACGTC 57.685 47.619 0.00 0.00 0.00 4.34
2437 5435 2.631062 AGAACAGATACAACCCACGTCA 59.369 45.455 0.00 0.00 0.00 4.35
2438 5436 2.743636 ACAGATACAACCCACGTCAG 57.256 50.000 0.00 0.00 0.00 3.51
2440 5438 0.973632 AGATACAACCCACGTCAGCA 59.026 50.000 0.00 0.00 0.00 4.41
2441 5439 1.076332 GATACAACCCACGTCAGCAC 58.924 55.000 0.00 0.00 0.00 4.40
2445 5443 1.817941 AACCCACGTCAGCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
2446 5444 3.337889 CCCACGTCAGCACACACG 61.338 66.667 0.00 0.00 41.90 4.49
2447 5445 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
2449 5447 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
2450 5448 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
2453 5451 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
2455 5453 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
2456 5454 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
2457 5455 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
2458 5456 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
2459 5457 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
2460 5458 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
2461 5459 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
2462 5460 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
2463 5461 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
2466 5464 5.178252 ACACGCATCTTATAGCATCACATTC 59.822 40.000 0.00 0.00 0.00 2.67
2467 5465 4.386954 ACGCATCTTATAGCATCACATTCG 59.613 41.667 0.00 0.00 0.00 3.34
2468 5466 4.622740 CGCATCTTATAGCATCACATTCGA 59.377 41.667 0.00 0.00 0.00 3.71
2470 5468 6.476051 GCATCTTATAGCATCACATTCGATG 58.524 40.000 0.00 0.00 44.69 3.84
2471 5469 6.456584 GCATCTTATAGCATCACATTCGATGG 60.457 42.308 3.32 0.00 42.58 3.51
2472 5470 4.931601 TCTTATAGCATCACATTCGATGGC 59.068 41.667 3.32 0.00 42.58 4.40
2474 5472 2.916702 AGCATCACATTCGATGGCTA 57.083 45.000 3.32 0.00 42.58 3.93
2475 5473 3.413846 AGCATCACATTCGATGGCTAT 57.586 42.857 3.32 0.00 42.58 2.97
2477 5475 4.502016 AGCATCACATTCGATGGCTATAG 58.498 43.478 0.00 0.00 42.58 1.31
2479 5477 4.931601 GCATCACATTCGATGGCTATAGAA 59.068 41.667 7.99 7.99 42.58 2.10
2480 5478 5.063186 GCATCACATTCGATGGCTATAGAAG 59.937 44.000 11.02 6.37 42.58 2.85
2481 5479 5.139435 TCACATTCGATGGCTATAGAAGG 57.861 43.478 14.21 14.21 36.31 3.46
2485 5490 5.070446 ACATTCGATGGCTATAGAAGGTGAA 59.930 40.000 19.14 2.06 40.01 3.18
2491 5496 5.537300 TGGCTATAGAAGGTGAATGAGAC 57.463 43.478 3.21 0.00 0.00 3.36
2492 5497 4.345257 TGGCTATAGAAGGTGAATGAGACC 59.655 45.833 3.21 0.00 0.00 3.85
2493 5498 4.345257 GGCTATAGAAGGTGAATGAGACCA 59.655 45.833 3.21 0.00 35.76 4.02
2494 5499 5.163301 GGCTATAGAAGGTGAATGAGACCAA 60.163 44.000 3.21 0.00 35.76 3.67
2532 5537 8.715191 CTAGATGAGTTCTAGCAAAACTGATT 57.285 34.615 0.32 0.00 45.63 2.57
2533 5538 9.809096 CTAGATGAGTTCTAGCAAAACTGATTA 57.191 33.333 0.32 0.00 45.63 1.75
2537 5542 8.425577 TGAGTTCTAGCAAAACTGATTATAGC 57.574 34.615 0.32 0.00 37.10 2.97
2547 5552 8.023128 GCAAAACTGATTATAGCTTTCTTGACA 58.977 33.333 0.00 0.00 0.00 3.58
2556 5561 3.159472 AGCTTTCTTGACAATCCATGCA 58.841 40.909 0.00 0.00 0.00 3.96
2557 5562 3.767673 AGCTTTCTTGACAATCCATGCAT 59.232 39.130 0.00 0.00 0.00 3.96
2569 5588 2.646930 TCCATGCATGTCTGAACATCC 58.353 47.619 24.58 0.00 44.41 3.51
2584 5603 4.039004 TGAACATCCTTTGGTTGAATGGTG 59.961 41.667 2.13 0.00 31.88 4.17
2592 5611 3.448093 TGGTTGAATGGTGGATGCTAA 57.552 42.857 0.00 0.00 0.00 3.09
2602 5621 5.567037 TGGTGGATGCTAATTACTGCTAT 57.433 39.130 0.00 0.00 0.00 2.97
2603 5622 6.680148 TGGTGGATGCTAATTACTGCTATA 57.320 37.500 0.00 0.00 0.00 1.31
2604 5623 6.701340 TGGTGGATGCTAATTACTGCTATAG 58.299 40.000 0.00 0.00 0.00 1.31
2605 5624 6.109359 GGTGGATGCTAATTACTGCTATAGG 58.891 44.000 1.04 0.00 0.00 2.57
2607 5626 6.591834 GTGGATGCTAATTACTGCTATAGGTG 59.408 42.308 1.04 0.00 0.00 4.00
2608 5627 6.270000 TGGATGCTAATTACTGCTATAGGTGT 59.730 38.462 1.04 0.00 0.00 4.16
2611 5630 8.608844 ATGCTAATTACTGCTATAGGTGTTTC 57.391 34.615 1.04 0.00 0.00 2.78
2612 5631 6.700081 TGCTAATTACTGCTATAGGTGTTTCG 59.300 38.462 1.04 0.00 0.00 3.46
2615 5634 9.740239 CTAATTACTGCTATAGGTGTTTCGTTA 57.260 33.333 1.04 0.00 0.00 3.18
2616 5635 8.644318 AATTACTGCTATAGGTGTTTCGTTAG 57.356 34.615 1.04 0.00 0.00 2.34
2617 5636 5.656213 ACTGCTATAGGTGTTTCGTTAGT 57.344 39.130 1.04 0.00 0.00 2.24
2636 5741 8.928733 TCGTTAGTACATAAAAGGTAGCAAAAG 58.071 33.333 0.00 0.00 0.00 2.27
2655 5760 9.869757 AGCAAAAGATTAAGTTAAGTTTGTTGT 57.130 25.926 19.79 10.10 0.00 3.32
2789 5917 2.301870 AGGCTTGATCTCCACGTTACAA 59.698 45.455 0.00 0.00 0.00 2.41
2790 5918 3.055094 AGGCTTGATCTCCACGTTACAAT 60.055 43.478 0.00 0.00 0.00 2.71
2791 5919 4.161565 AGGCTTGATCTCCACGTTACAATA 59.838 41.667 0.00 0.00 0.00 1.90
2792 5920 4.508124 GGCTTGATCTCCACGTTACAATAG 59.492 45.833 0.00 0.00 0.00 1.73
2793 5921 4.508124 GCTTGATCTCCACGTTACAATAGG 59.492 45.833 0.00 0.00 0.00 2.57
2794 5922 4.054780 TGATCTCCACGTTACAATAGGC 57.945 45.455 0.00 0.00 0.00 3.93
2795 5923 3.704566 TGATCTCCACGTTACAATAGGCT 59.295 43.478 0.00 0.00 0.00 4.58
2796 5924 4.161565 TGATCTCCACGTTACAATAGGCTT 59.838 41.667 0.00 0.00 0.00 4.35
2797 5925 3.857052 TCTCCACGTTACAATAGGCTTG 58.143 45.455 0.00 0.00 0.00 4.01
2798 5926 3.512329 TCTCCACGTTACAATAGGCTTGA 59.488 43.478 0.00 0.00 0.00 3.02
2799 5927 4.161565 TCTCCACGTTACAATAGGCTTGAT 59.838 41.667 0.00 0.00 0.00 2.57
2800 5928 4.439057 TCCACGTTACAATAGGCTTGATC 58.561 43.478 0.00 0.00 0.00 2.92
2801 5929 4.161565 TCCACGTTACAATAGGCTTGATCT 59.838 41.667 0.00 0.00 0.00 2.75
2802 5930 4.508124 CCACGTTACAATAGGCTTGATCTC 59.492 45.833 0.00 0.00 0.00 2.75
2803 5931 4.508124 CACGTTACAATAGGCTTGATCTCC 59.492 45.833 0.00 0.00 0.00 3.71
2804 5932 4.161565 ACGTTACAATAGGCTTGATCTCCA 59.838 41.667 0.00 0.00 0.00 3.86
2805 5933 4.508124 CGTTACAATAGGCTTGATCTCCAC 59.492 45.833 0.00 0.00 0.00 4.02
2806 5934 3.185246 ACAATAGGCTTGATCTCCACG 57.815 47.619 0.00 0.00 0.00 4.94
2807 5935 2.501723 ACAATAGGCTTGATCTCCACGT 59.498 45.455 0.00 0.00 0.00 4.49
2808 5936 3.055094 ACAATAGGCTTGATCTCCACGTT 60.055 43.478 0.00 0.00 0.00 3.99
2809 5937 4.161565 ACAATAGGCTTGATCTCCACGTTA 59.838 41.667 0.00 0.00 0.00 3.18
2810 5938 5.163301 ACAATAGGCTTGATCTCCACGTTAT 60.163 40.000 0.00 0.00 0.00 1.89
2811 5939 6.041637 ACAATAGGCTTGATCTCCACGTTATA 59.958 38.462 0.00 0.00 0.00 0.98
5348 8591 5.050490 GTGATATTGAAAAGGCGCTCTAGA 58.950 41.667 7.64 0.00 0.00 2.43
6585 9850 3.788766 CGCAGTTGTAGCCGCCAC 61.789 66.667 0.00 0.00 0.00 5.01
6586 9851 3.431725 GCAGTTGTAGCCGCCACC 61.432 66.667 0.00 0.00 0.00 4.61
7756 11111 1.867615 CTCACCGAGTTCGACGAGT 59.132 57.895 2.59 0.00 43.02 4.18
7875 11230 0.958822 CTTCCAAGAAACCCAACCCG 59.041 55.000 0.00 0.00 0.00 5.28
7921 11277 2.032924 GCCGACAACAACAGTAAGCTTT 59.967 45.455 3.20 0.00 0.00 3.51
8001 11361 1.361793 TTAACCACGCACGGCTAATC 58.638 50.000 0.00 0.00 0.00 1.75
8052 11413 2.281484 GAGCGCCACCAAGTCCAA 60.281 61.111 2.29 0.00 0.00 3.53
8080 11441 2.029288 CAACACGAGCGCCATCAGT 61.029 57.895 2.29 0.00 0.00 3.41
8110 11471 2.743928 CACGACCAGAGCAAGGCC 60.744 66.667 0.00 0.00 0.00 5.19
8149 11510 3.461773 ATGACGCTCACCCTCGGG 61.462 66.667 0.00 0.00 42.03 5.14
8178 11539 2.048503 GAAGGACGACCACCACCG 60.049 66.667 6.71 0.00 38.94 4.94
8207 11568 3.848301 AACGCCATGCAGCTCCACA 62.848 57.895 0.00 0.00 0.00 4.17
8251 11612 1.001764 CATCACCTCCCTGCTGCAA 60.002 57.895 3.02 0.00 0.00 4.08
8252 11613 1.030488 CATCACCTCCCTGCTGCAAG 61.030 60.000 3.02 0.00 0.00 4.01
8253 11614 2.207501 ATCACCTCCCTGCTGCAAGG 62.208 60.000 15.52 15.52 37.05 3.61
8365 11763 2.101249 CCAGAACAACAACAGCAACCAT 59.899 45.455 0.00 0.00 0.00 3.55
8370 11768 2.431260 CAACAGCAACCATGGCGC 60.431 61.111 13.04 15.45 36.08 6.53
8380 11778 4.132441 CATGGCGCCGGCAACAAT 62.132 61.111 28.98 14.27 42.43 2.71
8453 11851 1.739562 CGCAGGTGAGCTTGGAGAC 60.740 63.158 0.00 0.00 0.00 3.36
8488 11912 1.192146 TGGAGTGGTGACCAGCCTAC 61.192 60.000 20.25 10.54 32.34 3.18
8500 11924 2.586357 GCCTACGCCTAGCACTGC 60.586 66.667 0.00 0.00 0.00 4.40
8734 12353 8.567948 AGTGAGGAAATAATGTTTGTGTTAGTG 58.432 33.333 0.00 0.00 0.00 2.74
8751 12371 7.068348 TGTGTTAGTGTTATTTTTGCCCTGTTA 59.932 33.333 0.00 0.00 0.00 2.41
8789 12409 5.157067 GTCTCCTTGCATTTAAGTTTCTGC 58.843 41.667 0.00 0.00 35.21 4.26
8804 12519 5.341617 AGTTTCTGCGCTAGTACATCTTAC 58.658 41.667 9.73 0.00 0.00 2.34
8853 12612 2.910319 ACATAGAAAGGGGTGTGTAGCA 59.090 45.455 0.00 0.00 0.00 3.49
8881 12640 7.414984 GCTCCAAGAGGATAGTTCAAAATTCAG 60.415 40.741 0.00 0.00 44.70 3.02
8920 12680 0.247736 CCAAGAGAGGTCCCAACTCG 59.752 60.000 0.00 0.00 39.90 4.18
8929 12689 1.207329 GGTCCCAACTCGCATTACTCT 59.793 52.381 0.00 0.00 0.00 3.24
8930 12690 2.541556 GTCCCAACTCGCATTACTCTC 58.458 52.381 0.00 0.00 0.00 3.20
8956 12716 1.662438 TTTCGAATCCGCCATTGCCC 61.662 55.000 0.00 0.00 35.37 5.36
9143 12916 1.296432 CGTACGTACACGAGAGGCG 60.296 63.158 24.50 4.38 44.69 5.52
9202 12975 1.598183 CGCGCTCATCTACAGTAGTGG 60.598 57.143 5.56 1.74 0.00 4.00
9204 12977 2.796383 GCGCTCATCTACAGTAGTGGTG 60.796 54.545 7.50 5.92 0.00 4.17
9215 12994 2.494870 CAGTAGTGGTGGTGGTAGTACC 59.505 54.545 12.80 12.80 41.24 3.34
9382 13171 4.063967 CGTGGGACTGTAGCGGCA 62.064 66.667 1.45 0.00 0.00 5.69
9383 13172 2.125512 GTGGGACTGTAGCGGCAG 60.126 66.667 1.45 8.65 41.92 4.85
9384 13173 2.283604 TGGGACTGTAGCGGCAGA 60.284 61.111 15.63 0.00 39.62 4.26
9385 13174 1.911269 TGGGACTGTAGCGGCAGAA 60.911 57.895 15.63 0.00 39.62 3.02
9386 13175 1.264749 TGGGACTGTAGCGGCAGAAT 61.265 55.000 15.63 0.00 39.62 2.40
9387 13176 0.107654 GGGACTGTAGCGGCAGAATT 60.108 55.000 15.63 0.00 39.62 2.17
9388 13177 1.009829 GGACTGTAGCGGCAGAATTG 58.990 55.000 15.63 0.00 39.62 2.32
9389 13178 1.405526 GGACTGTAGCGGCAGAATTGA 60.406 52.381 15.63 0.00 39.62 2.57
9390 13179 1.661112 GACTGTAGCGGCAGAATTGAC 59.339 52.381 15.63 0.00 39.62 3.18
9391 13180 1.001974 ACTGTAGCGGCAGAATTGACA 59.998 47.619 15.63 0.00 39.62 3.58
9392 13181 2.076100 CTGTAGCGGCAGAATTGACAA 58.924 47.619 1.45 0.00 38.70 3.18
9393 13182 2.679837 CTGTAGCGGCAGAATTGACAAT 59.320 45.455 1.45 0.00 38.70 2.71
9394 13183 3.081061 TGTAGCGGCAGAATTGACAATT 58.919 40.909 13.24 13.24 30.39 2.32
9395 13184 3.505680 TGTAGCGGCAGAATTGACAATTT 59.494 39.130 14.46 2.92 30.39 1.82
9396 13185 3.665745 AGCGGCAGAATTGACAATTTT 57.334 38.095 14.46 6.50 30.39 1.82
9397 13186 3.319755 AGCGGCAGAATTGACAATTTTG 58.680 40.909 21.37 21.37 36.40 2.44
9398 13187 3.005684 AGCGGCAGAATTGACAATTTTGA 59.994 39.130 27.04 0.00 35.61 2.69
9399 13188 3.121778 GCGGCAGAATTGACAATTTTGAC 59.878 43.478 27.04 24.49 37.58 3.18
9400 13189 3.674753 CGGCAGAATTGACAATTTTGACC 59.325 43.478 27.04 24.04 37.64 4.02
9401 13190 4.559300 CGGCAGAATTGACAATTTTGACCT 60.559 41.667 27.04 12.61 37.64 3.85
9402 13191 5.299949 GGCAGAATTGACAATTTTGACCTT 58.700 37.500 27.04 1.43 35.54 3.50
9403 13192 6.454795 GGCAGAATTGACAATTTTGACCTTA 58.545 36.000 27.04 0.00 35.54 2.69
9404 13193 6.928492 GGCAGAATTGACAATTTTGACCTTAA 59.072 34.615 27.04 0.00 35.54 1.85
9405 13194 7.440856 GGCAGAATTGACAATTTTGACCTTAAA 59.559 33.333 27.04 0.00 35.54 1.52
9406 13195 8.490355 GCAGAATTGACAATTTTGACCTTAAAG 58.510 33.333 27.04 5.73 35.61 1.85
9407 13196 9.533253 CAGAATTGACAATTTTGACCTTAAAGT 57.467 29.630 21.20 0.00 35.61 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.605319 TTTAAGTCAGCTGGCCACGG 60.605 55.000 16.31 0.00 0.00 4.94
32 33 6.214399 CGCCTACCCTAGTTATTTAAGTCAG 58.786 44.000 0.00 0.00 0.00 3.51
33 34 5.069516 CCGCCTACCCTAGTTATTTAAGTCA 59.930 44.000 0.00 0.00 0.00 3.41
58 59 0.179004 TCCACATTCAACCCGTTGCT 60.179 50.000 2.60 0.00 40.24 3.91
63 64 3.039202 GCGCTCCACATTCAACCCG 62.039 63.158 0.00 0.00 0.00 5.28
80 81 1.470494 GCCTGAAAAGCTTACTCCTGC 59.530 52.381 0.00 1.84 0.00 4.85
82 83 2.026729 GGAGCCTGAAAAGCTTACTCCT 60.027 50.000 0.00 0.00 41.75 3.69
104 105 1.027357 AATGGCATTCTCACCATCGC 58.973 50.000 6.96 0.00 46.04 4.58
105 106 3.251729 CCTAAATGGCATTCTCACCATCG 59.748 47.826 14.04 0.00 46.04 3.84
106 107 4.843220 CCTAAATGGCATTCTCACCATC 57.157 45.455 14.04 0.00 46.04 3.51
134 135 0.679002 ATTCATGCCAGCTGAGCGTT 60.679 50.000 17.39 6.00 0.00 4.84
136 137 1.355563 CATTCATGCCAGCTGAGCG 59.644 57.895 17.39 5.59 0.00 5.03
171 172 0.667487 ACGCATTCAGAGTGGACGTG 60.667 55.000 0.00 0.00 0.00 4.49
189 190 1.519455 CGCCACGAGAATCCTCCAC 60.519 63.158 0.00 0.00 36.04 4.02
203 205 2.112297 AAAAACCTCTCCGCGCCA 59.888 55.556 0.00 0.00 0.00 5.69
226 228 1.071314 TTCCAACACCCTGGACCCAT 61.071 55.000 0.00 0.00 45.37 4.00
237 239 2.410730 CCGTCACGTTAGATTCCAACAC 59.589 50.000 0.00 0.00 0.00 3.32
262 264 1.004394 GTAGGTTTGGGGGAGTTCAGG 59.996 57.143 0.00 0.00 0.00 3.86
263 265 1.004394 GGTAGGTTTGGGGGAGTTCAG 59.996 57.143 0.00 0.00 0.00 3.02
264 266 1.069775 GGTAGGTTTGGGGGAGTTCA 58.930 55.000 0.00 0.00 0.00 3.18
266 268 0.103554 AGGGTAGGTTTGGGGGAGTT 60.104 55.000 0.00 0.00 0.00 3.01
296 299 3.126001 AGTCTGAATTCTCGCAAACCA 57.874 42.857 7.05 0.00 0.00 3.67
313 316 1.135333 GTCCAGACCGATCCAGAAGTC 59.865 57.143 0.00 0.00 0.00 3.01
315 318 1.186200 TGTCCAGACCGATCCAGAAG 58.814 55.000 0.00 0.00 0.00 2.85
316 319 1.639722 TTGTCCAGACCGATCCAGAA 58.360 50.000 0.00 0.00 0.00 3.02
322 325 5.357032 GGTCATTAAATTTGTCCAGACCGAT 59.643 40.000 0.00 0.00 35.49 4.18
344 347 3.426787 TTTATCACATCCAACCACGGT 57.573 42.857 0.00 0.00 0.00 4.83
365 368 1.295423 CTGGACGGTCCCGACATTT 59.705 57.895 23.81 0.00 42.83 2.32
367 370 2.283676 ACTGGACGGTCCCGACAT 60.284 61.111 23.81 0.00 42.83 3.06
368 371 2.987547 GACTGGACGGTCCCGACA 60.988 66.667 23.81 9.85 42.83 4.35
382 385 4.672542 CGATCGCAAAATGTTCATTGGACT 60.673 41.667 0.26 0.00 0.00 3.85
387 390 5.289193 CCAAATCGATCGCAAAATGTTCATT 59.711 36.000 11.09 0.00 0.00 2.57
445 448 1.078426 CCGGATGTGTCCTCAACCC 60.078 63.158 0.00 0.00 42.73 4.11
573 601 2.683362 CACAGAGAAGACATGCATGCAT 59.317 45.455 27.46 27.46 37.08 3.96
574 602 2.081462 CACAGAGAAGACATGCATGCA 58.919 47.619 26.53 25.04 0.00 3.96
575 603 1.400846 CCACAGAGAAGACATGCATGC 59.599 52.381 26.53 18.25 0.00 4.06
675 705 2.046507 GTCAGCTGCCTCACTGGG 60.047 66.667 9.47 0.00 34.57 4.45
801 2154 4.280819 AGAGAGAAGAGATTGAGAGGGTG 58.719 47.826 0.00 0.00 0.00 4.61
870 2236 1.375140 AGTGAGGATGTGCTGTGCG 60.375 57.895 0.00 0.00 0.00 5.34
881 2257 3.106827 TGGCTGTATGAATCAGTGAGGA 58.893 45.455 0.00 0.00 35.60 3.71
938 2343 1.534476 GGGGGAGCTAGCTAGGACC 60.534 68.421 19.38 14.50 0.00 4.46
1708 3175 0.478507 GAGAGAGAGAGGGAGGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
1795 3558 1.407437 CCCTAGCCTAACTGCAACCTG 60.407 57.143 0.00 0.00 0.00 4.00
1805 3568 1.238049 GGCCCTACCCCTAGCCTAA 59.762 63.158 0.00 0.00 42.34 2.69
1826 3591 0.039165 GAAAAGGCCAACAGCTTCCG 60.039 55.000 5.01 0.00 43.05 4.30
1837 3602 2.126850 GCGCGAACTGAAAAGGCC 60.127 61.111 12.10 0.00 0.00 5.19
1868 3634 2.258286 GCAACGGACAATGGGCAC 59.742 61.111 0.00 0.00 0.00 5.01
1898 3664 1.952296 ACAAAGGACAGCAGAGCTTTG 59.048 47.619 0.00 0.00 36.40 2.77
1906 3672 1.471327 GCTTTTGCACAAAGGACAGCA 60.471 47.619 17.37 0.00 46.58 4.41
1942 3708 2.430921 AGTGTAGTGCGCGACTGC 60.431 61.111 12.10 14.61 37.78 4.40
1943 3709 1.067743 CTCAGTGTAGTGCGCGACTG 61.068 60.000 12.10 14.02 37.72 3.51
1944 3710 1.210413 CTCAGTGTAGTGCGCGACT 59.790 57.895 12.10 13.42 38.88 4.18
1945 3711 1.066114 GTCTCAGTGTAGTGCGCGAC 61.066 60.000 12.10 5.29 0.00 5.19
1946 3712 1.209383 GTCTCAGTGTAGTGCGCGA 59.791 57.895 12.10 0.00 0.00 5.87
1947 3713 2.146519 CGTCTCAGTGTAGTGCGCG 61.147 63.158 0.00 0.00 0.00 6.86
1948 3714 1.066114 GTCGTCTCAGTGTAGTGCGC 61.066 60.000 0.00 0.00 0.00 6.09
1949 3715 0.454620 GGTCGTCTCAGTGTAGTGCG 60.455 60.000 0.00 0.00 0.00 5.34
1950 3716 0.596577 TGGTCGTCTCAGTGTAGTGC 59.403 55.000 0.00 0.00 0.00 4.40
1951 3717 1.880675 ACTGGTCGTCTCAGTGTAGTG 59.119 52.381 7.12 0.00 43.07 2.74
1952 3718 2.152830 GACTGGTCGTCTCAGTGTAGT 58.847 52.381 11.38 0.00 44.51 2.73
1953 3719 2.152016 TGACTGGTCGTCTCAGTGTAG 58.848 52.381 11.38 0.00 44.51 2.74
1954 3720 2.265589 TGACTGGTCGTCTCAGTGTA 57.734 50.000 11.38 1.02 44.51 2.90
1955 3721 1.270826 CATGACTGGTCGTCTCAGTGT 59.729 52.381 11.38 0.72 44.51 3.55
2043 3818 0.392998 ACGCCATGGTCAGATTCCAC 60.393 55.000 14.67 0.00 37.81 4.02
2045 3820 1.463674 AAACGCCATGGTCAGATTCC 58.536 50.000 14.67 0.00 0.00 3.01
2047 3822 1.818674 GGAAAACGCCATGGTCAGATT 59.181 47.619 14.67 3.80 0.00 2.40
2100 3882 2.184579 CTTTCTCCGGTCTCCGCC 59.815 66.667 0.00 0.00 46.86 6.13
2101 3883 2.184579 CCTTTCTCCGGTCTCCGC 59.815 66.667 0.00 0.00 46.86 5.54
2103 3885 1.597461 CACCCTTTCTCCGGTCTCC 59.403 63.158 0.00 0.00 0.00 3.71
2104 3886 1.192803 ACCACCCTTTCTCCGGTCTC 61.193 60.000 0.00 0.00 0.00 3.36
2105 3887 1.152096 ACCACCCTTTCTCCGGTCT 60.152 57.895 0.00 0.00 0.00 3.85
2121 5052 1.440362 TTTCCCTCCCCCTTTCCACC 61.440 60.000 0.00 0.00 0.00 4.61
2183 5141 1.010793 TCCTCTCCTCTCCTCTCCTCT 59.989 57.143 0.00 0.00 0.00 3.69
2184 5142 1.421646 CTCCTCTCCTCTCCTCTCCTC 59.578 61.905 0.00 0.00 0.00 3.71
2186 5144 0.478507 CCTCCTCTCCTCTCCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
2187 5145 0.478507 CCCTCCTCTCCTCTCCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
2188 5146 0.047176 TCCCTCCTCTCCTCTCCTCT 59.953 60.000 0.00 0.00 0.00 3.69
2189 5147 0.478507 CTCCCTCCTCTCCTCTCCTC 59.521 65.000 0.00 0.00 0.00 3.71
2190 5148 0.047176 TCTCCCTCCTCTCCTCTCCT 59.953 60.000 0.00 0.00 0.00 3.69
2213 5171 2.123854 ATCAGCCAGCCAGCCATG 60.124 61.111 0.00 0.00 0.00 3.66
2214 5172 2.195139 GATCAGCCAGCCAGCCAT 59.805 61.111 0.00 0.00 0.00 4.40
2215 5173 4.119363 GGATCAGCCAGCCAGCCA 62.119 66.667 0.00 0.00 36.34 4.75
2218 5176 3.790437 ACCGGATCAGCCAGCCAG 61.790 66.667 9.46 0.00 35.94 4.85
2219 5177 4.100084 CACCGGATCAGCCAGCCA 62.100 66.667 9.46 0.00 35.94 4.75
2267 5225 2.578021 AGGATAAAGAGGAAAGGCAGCA 59.422 45.455 0.00 0.00 0.00 4.41
2268 5226 3.210227 GAGGATAAAGAGGAAAGGCAGC 58.790 50.000 0.00 0.00 0.00 5.25
2269 5227 3.434310 GGGAGGATAAAGAGGAAAGGCAG 60.434 52.174 0.00 0.00 0.00 4.85
2270 5228 2.509964 GGGAGGATAAAGAGGAAAGGCA 59.490 50.000 0.00 0.00 0.00 4.75
2271 5229 2.509964 TGGGAGGATAAAGAGGAAAGGC 59.490 50.000 0.00 0.00 0.00 4.35
2357 5355 6.657541 CATCTAGATGAGTTCTAGGTACTCCC 59.342 46.154 25.78 12.05 44.99 4.30
2358 5356 7.455058 TCATCTAGATGAGTTCTAGGTACTCC 58.545 42.308 27.93 8.04 44.99 3.85
2388 5386 9.528018 GTTTTCAAAGTGAATGAGACCAAATTA 57.472 29.630 0.00 0.00 36.11 1.40
2389 5387 8.040132 TGTTTTCAAAGTGAATGAGACCAAATT 58.960 29.630 0.00 0.00 36.11 1.82
2390 5388 7.555087 TGTTTTCAAAGTGAATGAGACCAAAT 58.445 30.769 0.00 0.00 36.11 2.32
2392 5390 6.522625 TGTTTTCAAAGTGAATGAGACCAA 57.477 33.333 0.00 0.00 36.11 3.67
2393 5391 6.376864 TCTTGTTTTCAAAGTGAATGAGACCA 59.623 34.615 0.00 0.00 39.47 4.02
2395 5393 7.754924 TGTTCTTGTTTTCAAAGTGAATGAGAC 59.245 33.333 0.00 0.00 39.47 3.36
2397 5395 7.970061 TCTGTTCTTGTTTTCAAAGTGAATGAG 59.030 33.333 0.00 0.00 39.47 2.90
2399 5397 8.638685 ATCTGTTCTTGTTTTCAAAGTGAATG 57.361 30.769 0.00 0.00 39.47 2.67
2400 5398 9.736023 GTATCTGTTCTTGTTTTCAAAGTGAAT 57.264 29.630 0.00 0.00 39.47 2.57
2402 5400 8.275015 TGTATCTGTTCTTGTTTTCAAAGTGA 57.725 30.769 0.00 0.00 39.47 3.41
2403 5401 8.798153 GTTGTATCTGTTCTTGTTTTCAAAGTG 58.202 33.333 0.00 0.00 39.47 3.16
2404 5402 7.973944 GGTTGTATCTGTTCTTGTTTTCAAAGT 59.026 33.333 0.00 0.00 39.47 2.66
2405 5403 7.435192 GGGTTGTATCTGTTCTTGTTTTCAAAG 59.565 37.037 0.00 0.00 39.47 2.77
2406 5404 7.093727 TGGGTTGTATCTGTTCTTGTTTTCAAA 60.094 33.333 0.00 0.00 39.47 2.69
2408 5406 5.888724 TGGGTTGTATCTGTTCTTGTTTTCA 59.111 36.000 0.00 0.00 0.00 2.69
2409 5407 6.206498 GTGGGTTGTATCTGTTCTTGTTTTC 58.794 40.000 0.00 0.00 0.00 2.29
2410 5408 5.220970 CGTGGGTTGTATCTGTTCTTGTTTT 60.221 40.000 0.00 0.00 0.00 2.43
2411 5409 4.274950 CGTGGGTTGTATCTGTTCTTGTTT 59.725 41.667 0.00 0.00 0.00 2.83
2412 5410 3.813166 CGTGGGTTGTATCTGTTCTTGTT 59.187 43.478 0.00 0.00 0.00 2.83
2413 5411 3.181458 ACGTGGGTTGTATCTGTTCTTGT 60.181 43.478 0.00 0.00 0.00 3.16
2414 5412 3.399330 ACGTGGGTTGTATCTGTTCTTG 58.601 45.455 0.00 0.00 0.00 3.02
2415 5413 3.070446 TGACGTGGGTTGTATCTGTTCTT 59.930 43.478 0.00 0.00 0.00 2.52
2416 5414 2.631062 TGACGTGGGTTGTATCTGTTCT 59.369 45.455 0.00 0.00 0.00 3.01
2418 5416 2.870435 GCTGACGTGGGTTGTATCTGTT 60.870 50.000 0.00 0.00 0.00 3.16
2419 5417 1.337823 GCTGACGTGGGTTGTATCTGT 60.338 52.381 0.00 0.00 0.00 3.41
2420 5418 1.337728 TGCTGACGTGGGTTGTATCTG 60.338 52.381 0.00 0.00 0.00 2.90
2421 5419 0.973632 TGCTGACGTGGGTTGTATCT 59.026 50.000 0.00 0.00 0.00 1.98
2423 5421 0.394938 TGTGCTGACGTGGGTTGTAT 59.605 50.000 0.00 0.00 0.00 2.29
2425 5423 1.817941 GTGTGCTGACGTGGGTTGT 60.818 57.895 0.00 0.00 0.00 3.32
2426 5424 1.817520 TGTGTGCTGACGTGGGTTG 60.818 57.895 0.00 0.00 0.00 3.77
2427 5425 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
2428 5426 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
2430 5428 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
2431 5429 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
2432 5430 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
2433 5431 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
2434 5432 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
2435 5433 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
2436 5434 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
2437 5435 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
2438 5436 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
2440 5438 3.804325 GTGATGCTATAAGATGCGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
2441 5439 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
2445 5443 4.622740 TCGAATGTGATGCTATAAGATGCG 59.377 41.667 0.00 0.00 0.00 4.73
2446 5444 6.456584 CCATCGAATGTGATGCTATAAGATGC 60.457 42.308 0.00 0.00 43.52 3.91
2447 5445 6.456584 GCCATCGAATGTGATGCTATAAGATG 60.457 42.308 0.00 0.00 43.52 2.90
2449 5447 4.931601 GCCATCGAATGTGATGCTATAAGA 59.068 41.667 0.00 0.00 43.52 2.10
2450 5448 4.934001 AGCCATCGAATGTGATGCTATAAG 59.066 41.667 0.00 0.00 43.52 1.73
2453 5451 3.413846 AGCCATCGAATGTGATGCTAT 57.586 42.857 0.00 0.00 43.52 2.97
2455 5453 2.916702 TAGCCATCGAATGTGATGCT 57.083 45.000 0.00 0.00 43.52 3.79
2456 5454 4.498241 TCTATAGCCATCGAATGTGATGC 58.502 43.478 0.00 0.00 43.52 3.91
2457 5455 5.579904 CCTTCTATAGCCATCGAATGTGATG 59.420 44.000 0.00 1.36 44.29 3.07
2458 5456 5.247110 ACCTTCTATAGCCATCGAATGTGAT 59.753 40.000 0.00 0.00 0.00 3.06
2459 5457 4.588951 ACCTTCTATAGCCATCGAATGTGA 59.411 41.667 0.00 0.00 0.00 3.58
2460 5458 4.687948 CACCTTCTATAGCCATCGAATGTG 59.312 45.833 0.00 1.96 31.25 3.21
2461 5459 4.588951 TCACCTTCTATAGCCATCGAATGT 59.411 41.667 0.00 0.00 0.00 2.71
2462 5460 5.139435 TCACCTTCTATAGCCATCGAATG 57.861 43.478 0.00 0.00 0.00 2.67
2463 5461 5.808366 TTCACCTTCTATAGCCATCGAAT 57.192 39.130 0.00 0.00 0.00 3.34
2466 5464 5.047731 TCTCATTCACCTTCTATAGCCATCG 60.048 44.000 0.00 0.00 0.00 3.84
2467 5465 6.162777 GTCTCATTCACCTTCTATAGCCATC 58.837 44.000 0.00 0.00 0.00 3.51
2468 5466 5.012561 GGTCTCATTCACCTTCTATAGCCAT 59.987 44.000 0.00 0.00 0.00 4.40
2470 5468 4.345257 TGGTCTCATTCACCTTCTATAGCC 59.655 45.833 0.00 0.00 34.66 3.93
2471 5469 5.537300 TGGTCTCATTCACCTTCTATAGC 57.463 43.478 0.00 0.00 34.66 2.97
2472 5470 8.970859 AATTTGGTCTCATTCACCTTCTATAG 57.029 34.615 0.00 0.00 34.66 1.31
2477 5475 9.566432 AGATATAATTTGGTCTCATTCACCTTC 57.434 33.333 0.00 0.00 34.66 3.46
2479 5477 8.717717 TGAGATATAATTTGGTCTCATTCACCT 58.282 33.333 10.50 0.00 41.40 4.00
2480 5478 8.908786 TGAGATATAATTTGGTCTCATTCACC 57.091 34.615 10.50 0.00 41.40 4.02
2511 5516 9.050601 GCTATAATCAGTTTTGCTAGAACTCAT 57.949 33.333 0.00 0.00 35.26 2.90
2516 5521 9.672673 AGAAAGCTATAATCAGTTTTGCTAGAA 57.327 29.630 0.00 0.00 30.23 2.10
2517 5522 9.672673 AAGAAAGCTATAATCAGTTTTGCTAGA 57.327 29.630 0.00 0.00 30.23 2.43
2522 5527 9.897744 TTGTCAAGAAAGCTATAATCAGTTTTG 57.102 29.630 0.00 0.00 30.23 2.44
2525 5530 8.897752 GGATTGTCAAGAAAGCTATAATCAGTT 58.102 33.333 0.00 0.00 0.00 3.16
2526 5531 8.049117 TGGATTGTCAAGAAAGCTATAATCAGT 58.951 33.333 0.00 0.00 0.00 3.41
2528 5533 8.843262 CATGGATTGTCAAGAAAGCTATAATCA 58.157 33.333 0.00 0.00 0.00 2.57
2529 5534 7.806960 GCATGGATTGTCAAGAAAGCTATAATC 59.193 37.037 0.00 0.00 0.00 1.75
2531 5536 6.602803 TGCATGGATTGTCAAGAAAGCTATAA 59.397 34.615 0.00 0.00 0.00 0.98
2532 5537 6.121590 TGCATGGATTGTCAAGAAAGCTATA 58.878 36.000 0.00 0.00 0.00 1.31
2533 5538 4.951715 TGCATGGATTGTCAAGAAAGCTAT 59.048 37.500 0.00 0.00 0.00 2.97
2536 5541 3.581024 TGCATGGATTGTCAAGAAAGC 57.419 42.857 0.00 0.00 0.00 3.51
2537 5542 5.068234 ACATGCATGGATTGTCAAGAAAG 57.932 39.130 29.41 0.00 0.00 2.62
2547 5552 4.913335 GATGTTCAGACATGCATGGATT 57.087 40.909 29.41 9.91 46.27 3.01
2557 5562 4.163441 TCAACCAAAGGATGTTCAGACA 57.837 40.909 0.00 0.00 40.71 3.41
2569 5588 2.564062 AGCATCCACCATTCAACCAAAG 59.436 45.455 0.00 0.00 0.00 2.77
2584 5603 6.702329 ACACCTATAGCAGTAATTAGCATCC 58.298 40.000 0.00 0.00 0.00 3.51
2592 5611 7.779073 ACTAACGAAACACCTATAGCAGTAAT 58.221 34.615 0.00 0.00 0.00 1.89
2602 5621 8.367156 ACCTTTTATGTACTAACGAAACACCTA 58.633 33.333 0.00 0.00 0.00 3.08
2603 5622 7.219322 ACCTTTTATGTACTAACGAAACACCT 58.781 34.615 0.00 0.00 0.00 4.00
2604 5623 7.425577 ACCTTTTATGTACTAACGAAACACC 57.574 36.000 0.00 0.00 0.00 4.16
2605 5624 8.164790 GCTACCTTTTATGTACTAACGAAACAC 58.835 37.037 0.00 0.00 0.00 3.32
2607 5626 8.243289 TGCTACCTTTTATGTACTAACGAAAC 57.757 34.615 0.00 0.00 0.00 2.78
2608 5627 8.830201 TTGCTACCTTTTATGTACTAACGAAA 57.170 30.769 0.00 0.00 0.00 3.46
2611 5630 8.928733 TCTTTTGCTACCTTTTATGTACTAACG 58.071 33.333 0.00 0.00 0.00 3.18
2636 5741 8.831000 ACACGAACAACAAACTTAACTTAATC 57.169 30.769 0.00 0.00 0.00 1.75
2640 5745 6.372381 ACCTACACGAACAACAAACTTAACTT 59.628 34.615 0.00 0.00 0.00 2.66
2655 5760 7.388437 ACCATATTTTACAGAACCTACACGAA 58.612 34.615 0.00 0.00 0.00 3.85
2789 5917 6.665992 TTATAACGTGGAGATCAAGCCTAT 57.334 37.500 0.00 0.00 0.00 2.57
2790 5918 6.665992 ATTATAACGTGGAGATCAAGCCTA 57.334 37.500 0.00 0.00 0.00 3.93
2791 5919 5.552870 ATTATAACGTGGAGATCAAGCCT 57.447 39.130 0.00 0.00 0.00 4.58
2792 5920 8.033038 TGTATATTATAACGTGGAGATCAAGCC 58.967 37.037 0.00 0.00 0.00 4.35
2793 5921 8.981724 TGTATATTATAACGTGGAGATCAAGC 57.018 34.615 0.00 0.00 0.00 4.01
2794 5922 9.077674 GCTGTATATTATAACGTGGAGATCAAG 57.922 37.037 0.00 0.00 0.00 3.02
2795 5923 8.803235 AGCTGTATATTATAACGTGGAGATCAA 58.197 33.333 0.00 0.00 0.00 2.57
2796 5924 8.349568 AGCTGTATATTATAACGTGGAGATCA 57.650 34.615 0.00 0.00 0.00 2.92
4732 7947 2.267006 CTGGTGCAGAGGCGACAT 59.733 61.111 0.00 0.00 45.35 3.06
5348 8591 6.966534 AAAGTCATTCAATCTCAAACACCT 57.033 33.333 0.00 0.00 0.00 4.00
6338 9585 1.078072 AGCAACCAACCACGTCACA 60.078 52.632 0.00 0.00 0.00 3.58
6752 10098 2.125106 AATCTCGTCGCCAAGGGC 60.125 61.111 0.00 0.00 46.75 5.19
7756 11111 3.452786 CCGGCAGCTCCTCTTCGA 61.453 66.667 0.00 0.00 0.00 3.71
7758 11113 1.153469 CTTCCGGCAGCTCCTCTTC 60.153 63.158 0.00 0.00 0.00 2.87
7830 11185 2.649034 GAGTCCTTGGACGTCGCA 59.351 61.111 9.92 6.05 0.00 5.10
7875 11230 4.925861 GAGCTGGAGATGGCGCCC 62.926 72.222 26.77 9.73 32.27 6.13
8001 11361 4.164822 TCGTACGTAGAAAAGGGAACTG 57.835 45.455 16.05 0.00 42.68 3.16
8131 11492 2.202797 CCGAGGGTGAGCGTCATG 60.203 66.667 5.18 0.00 0.00 3.07
8207 11568 2.839098 CTGCTCCTGGTGGTGGTT 59.161 61.111 0.00 0.00 34.23 3.67
8251 11612 1.321805 TGCTGTTGTTGTTGCTGCCT 61.322 50.000 0.00 0.00 0.00 4.75
8252 11613 0.459934 TTGCTGTTGTTGTTGCTGCC 60.460 50.000 0.00 0.00 0.00 4.85
8253 11614 0.646895 GTTGCTGTTGTTGTTGCTGC 59.353 50.000 0.00 0.00 0.00 5.25
8365 11763 2.673341 TTATTGTTGCCGGCGCCA 60.673 55.556 28.98 18.11 0.00 5.69
8370 11768 5.223382 TGTTATTGTTGTTATTGTTGCCGG 58.777 37.500 0.00 0.00 0.00 6.13
8380 11778 8.791675 TCAAAGAGATGCATGTTATTGTTGTTA 58.208 29.630 2.46 0.00 0.00 2.41
8453 11851 4.462394 CATGGCTCCATGTACGGG 57.538 61.111 18.34 0.00 46.20 5.28
8488 11912 2.358615 TTGGTGCAGTGCTAGGCG 60.359 61.111 17.60 0.00 0.00 5.52
8545 11975 4.152647 CCCTTAAGGTTTTTGCTCTCCTT 58.847 43.478 20.22 0.00 42.10 3.36
8669 12126 3.179265 GCATGCTTGCTTGCAGCG 61.179 61.111 22.71 5.26 46.26 5.18
8690 12147 3.318839 TCACTGAAACAGAAAATGGCAGG 59.681 43.478 5.76 0.00 35.18 4.85
8734 12353 7.617225 AGGGTTAATAACAGGGCAAAAATAAC 58.383 34.615 5.45 0.00 0.00 1.89
8743 12362 5.713389 ACAGTAAAAGGGTTAATAACAGGGC 59.287 40.000 5.45 0.00 0.00 5.19
8751 12371 5.710567 GCAAGGAGACAGTAAAAGGGTTAAT 59.289 40.000 0.00 0.00 0.00 1.40
8754 12374 3.117663 TGCAAGGAGACAGTAAAAGGGTT 60.118 43.478 0.00 0.00 0.00 4.11
8756 12376 3.140325 TGCAAGGAGACAGTAAAAGGG 57.860 47.619 0.00 0.00 0.00 3.95
8789 12409 5.915758 GTGGAAGATGTAAGATGTACTAGCG 59.084 44.000 0.00 0.00 0.00 4.26
8804 12519 4.696877 TGTGTTGATTAGCTGTGGAAGATG 59.303 41.667 0.00 0.00 0.00 2.90
8853 12612 5.505181 TTTGAACTATCCTCTTGGAGCTT 57.495 39.130 0.00 0.00 46.91 3.74
8881 12640 0.387239 CTAAAGCTTTGGGCACGCAC 60.387 55.000 22.02 0.00 44.79 5.34
8956 12716 0.593128 CGGTCAGGGTTGAAAGCTTG 59.407 55.000 0.00 0.00 34.49 4.01
9007 12768 5.509840 CCTTGGAATTACTCCTGATACTCCG 60.510 48.000 0.00 0.00 45.64 4.63
9143 12916 3.617263 CAGGTAGCCTTGTCGTGAATTAC 59.383 47.826 0.00 0.00 0.00 1.89
9184 12957 2.223595 CCACCACTACTGTAGATGAGCG 60.224 54.545 21.01 6.32 0.00 5.03
9202 12975 0.533491 TGATGCGGTACTACCACCAC 59.467 55.000 6.06 0.00 38.47 4.16
9204 12977 1.865865 CATGATGCGGTACTACCACC 58.134 55.000 6.06 0.00 38.47 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.