Multiple sequence alignment - TraesCS7B01G401600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G401600 chr7B 100.000 4308 0 0 1 4308 667776711 667781018 0.000000e+00 7956.0
1 TraesCS7B01G401600 chr7B 90.566 53 1 3 403 452 636337901 636337952 2.780000e-07 67.6
2 TraesCS7B01G401600 chr7D 91.769 3900 206 63 1 3861 593179695 593175872 0.000000e+00 5317.0
3 TraesCS7B01G401600 chr7A 92.211 2311 122 31 1700 4001 685906497 685904236 0.000000e+00 3217.0
4 TraesCS7B01G401600 chr7A 88.709 1727 114 44 3 1703 685908327 685906656 0.000000e+00 2034.0
5 TraesCS7B01G401600 chr7A 87.000 100 7 5 545 639 318259728 318259826 1.640000e-19 108.0
6 TraesCS7B01G401600 chr6D 77.538 463 98 6 2836 3295 152269677 152269218 1.530000e-69 274.0
7 TraesCS7B01G401600 chr6D 93.056 144 8 2 4002 4143 423081154 423081297 4.370000e-50 209.0
8 TraesCS7B01G401600 chr6D 80.469 128 17 6 508 632 467078994 467079116 1.650000e-14 91.6
9 TraesCS7B01G401600 chr6B 77.586 464 96 8 2836 3295 276746009 276745550 1.530000e-69 274.0
10 TraesCS7B01G401600 chr6B 85.047 107 11 4 545 650 693359964 693360066 2.120000e-18 104.0
11 TraesCS7B01G401600 chr6A 77.322 463 99 6 2836 3295 189921897 189922356 7.100000e-68 268.0
12 TraesCS7B01G401600 chr6A 77.003 287 20 23 545 831 579956450 579956210 5.850000e-24 122.0
13 TraesCS7B01G401600 chr3B 91.608 143 6 5 4000 4141 179668044 179668181 4.400000e-45 193.0
14 TraesCS7B01G401600 chr3B 94.382 89 5 0 4208 4296 592595608 592595696 2.090000e-28 137.0
15 TraesCS7B01G401600 chr3B 89.091 55 3 3 403 457 25632761 25632812 1.000000e-06 65.8
16 TraesCS7B01G401600 chr5A 78.171 339 30 22 501 831 119999681 119999379 4.430000e-40 176.0
17 TraesCS7B01G401600 chr5A 87.000 100 8 4 545 639 175564079 175564178 1.640000e-19 108.0
18 TraesCS7B01G401600 chr5A 95.082 61 3 0 403 463 563314823 563314883 3.550000e-16 97.1
19 TraesCS7B01G401600 chr4B 92.308 104 6 2 4030 4131 10407913 10408016 3.470000e-31 147.0
20 TraesCS7B01G401600 chr4B 90.196 51 2 3 403 453 665333701 665333748 3.600000e-06 63.9
21 TraesCS7B01G401600 chr3D 94.382 89 5 0 4208 4296 38194339 38194427 2.090000e-28 137.0
22 TraesCS7B01G401600 chr3D 81.081 111 13 4 396 498 414650617 414650507 9.930000e-12 82.4
23 TraesCS7B01G401600 chr2B 91.000 100 9 0 4197 4296 566617922 566618021 7.510000e-28 135.0
24 TraesCS7B01G401600 chr2B 83.146 89 6 5 531 611 100085952 100086039 5.980000e-09 73.1
25 TraesCS7B01G401600 chr2A 93.407 91 6 0 4206 4296 132067631 132067541 7.510000e-28 135.0
26 TraesCS7B01G401600 chr2A 91.753 97 7 1 4200 4296 751839649 751839744 2.700000e-27 134.0
27 TraesCS7B01G401600 chr4A 92.391 92 7 0 4205 4296 463545413 463545504 9.720000e-27 132.0
28 TraesCS7B01G401600 chr4A 89.744 78 8 0 4033 4110 597763300 597763223 2.740000e-17 100.0
29 TraesCS7B01G401600 chr3A 93.258 89 6 0 4208 4296 711082621 711082533 9.720000e-27 132.0
30 TraesCS7B01G401600 chr3A 90.722 97 9 0 4200 4296 102529840 102529744 3.500000e-26 130.0
31 TraesCS7B01G401600 chr3A 90.000 50 3 2 403 451 240491437 240491389 3.600000e-06 63.9
32 TraesCS7B01G401600 chr1A 92.391 92 7 0 4205 4296 108154801 108154892 9.720000e-27 132.0
33 TraesCS7B01G401600 chr1B 87.500 96 6 5 549 639 77805755 77805849 5.890000e-19 106.0
34 TraesCS7B01G401600 chr1B 86.869 99 8 4 546 639 346760437 346760535 5.890000e-19 106.0
35 TraesCS7B01G401600 chr1B 92.308 52 0 3 403 451 44187266 44187316 2.150000e-08 71.3
36 TraesCS7B01G401600 chr5D 78.836 189 15 13 645 831 391983455 391983290 2.120000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G401600 chr7B 667776711 667781018 4307 False 7956.0 7956 100.000 1 4308 1 chr7B.!!$F2 4307
1 TraesCS7B01G401600 chr7D 593175872 593179695 3823 True 5317.0 5317 91.769 1 3861 1 chr7D.!!$R1 3860
2 TraesCS7B01G401600 chr7A 685904236 685908327 4091 True 2625.5 3217 90.460 3 4001 2 chr7A.!!$R1 3998

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
671 687 0.327964 CTCATCCCCCTTCCCTCCTT 60.328 60.000 0.00 0.0 0.0 3.36 F
1356 1386 0.041238 CTGTGGAGGAGGAGGTGGTA 59.959 60.000 0.00 0.0 0.0 3.25 F
1980 2173 1.408822 GCACCCAGGCTGCTATTAGTT 60.409 52.381 9.56 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2451 2656 0.896226 GGAACTGGGCGTAGAGACTT 59.104 55.000 0.0 0.0 0.00 3.01 R
2462 2667 1.072965 ACAAGCAGAAGAGGAACTGGG 59.927 52.381 0.0 0.0 41.55 4.45 R
3651 3860 0.387929 GGATATCGAACTGCCCGTCA 59.612 55.000 0.0 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 189 3.168528 GCCCCGAAGCCCTCCATA 61.169 66.667 0.00 0.00 0.00 2.74
185 193 2.421739 CGAAGCCCTCCATACCCG 59.578 66.667 0.00 0.00 0.00 5.28
192 202 2.423446 CTCCATACCCGCTCTGCC 59.577 66.667 0.00 0.00 0.00 4.85
205 216 1.507141 CTCTGCCCGTGCTCGTTTTT 61.507 55.000 7.47 0.00 38.71 1.94
228 239 1.001641 GAACAGGGGAGCAGCACAT 60.002 57.895 0.00 0.00 0.00 3.21
235 246 1.410083 GGGGAGCAGCACATATTTGGA 60.410 52.381 0.00 0.00 0.00 3.53
248 259 6.542852 CACATATTTGGAGAAACGTTACAGG 58.457 40.000 0.00 0.00 0.00 4.00
249 260 6.148811 CACATATTTGGAGAAACGTTACAGGT 59.851 38.462 0.00 0.00 0.00 4.00
250 261 7.332430 CACATATTTGGAGAAACGTTACAGGTA 59.668 37.037 0.00 0.00 0.00 3.08
251 262 7.548075 ACATATTTGGAGAAACGTTACAGGTAG 59.452 37.037 0.00 0.00 0.00 3.18
253 264 6.403866 TTTGGAGAAACGTTACAGGTAGTA 57.596 37.500 0.00 0.00 0.00 1.82
254 265 6.594788 TTGGAGAAACGTTACAGGTAGTAT 57.405 37.500 0.00 0.00 31.53 2.12
255 266 7.701539 TTGGAGAAACGTTACAGGTAGTATA 57.298 36.000 0.00 0.00 31.53 1.47
262 273 7.998753 AACGTTACAGGTAGTATAATTCTGC 57.001 36.000 0.00 0.00 31.53 4.26
263 274 6.204359 ACGTTACAGGTAGTATAATTCTGCG 58.796 40.000 4.01 0.00 31.53 5.18
303 314 0.660300 CAAGTTTCGAAGGGCGTTGC 60.660 55.000 0.00 0.00 41.80 4.17
510 521 4.351054 CAGGACCCCCACCAGCAC 62.351 72.222 0.00 0.00 33.88 4.40
524 535 4.475135 GCACCGCCTCCCTCCTTC 62.475 72.222 0.00 0.00 0.00 3.46
529 540 3.093172 GCCTCCCTCCTTCCTGGG 61.093 72.222 0.00 0.00 44.66 4.45
601 612 2.760385 AGGTAGCCGCCACTCCTC 60.760 66.667 0.00 0.00 0.00 3.71
608 619 3.827898 CGCCACTCCTCCGTCCTC 61.828 72.222 0.00 0.00 0.00 3.71
610 621 2.360980 CCACTCCTCCGTCCTCCT 59.639 66.667 0.00 0.00 0.00 3.69
619 635 2.364961 CGTCCTCCTTCCTCCCCT 59.635 66.667 0.00 0.00 0.00 4.79
629 645 0.800239 TTCCTCCCCTCTCCTTCCTT 59.200 55.000 0.00 0.00 0.00 3.36
634 650 1.398234 CCCTCTCCTTCCTTCCCCT 59.602 63.158 0.00 0.00 0.00 4.79
637 653 1.208706 CTCTCCTTCCTTCCCCTTCC 58.791 60.000 0.00 0.00 0.00 3.46
662 678 1.319799 CCTCTTCCCTCATCCCCCT 59.680 63.158 0.00 0.00 0.00 4.79
671 687 0.327964 CTCATCCCCCTTCCCTCCTT 60.328 60.000 0.00 0.00 0.00 3.36
676 692 1.694525 CCCCTTCCCTCCTTCCTCC 60.695 68.421 0.00 0.00 0.00 4.30
696 714 2.486982 CCTGCATCCTCTGTTTGTTCAG 59.513 50.000 0.00 0.00 36.85 3.02
700 724 4.402155 TGCATCCTCTGTTTGTTCAGTTTT 59.598 37.500 0.00 0.00 36.85 2.43
753 777 8.879342 ATGAGTACTTGCTGTAGATTTGATAC 57.121 34.615 0.00 0.00 0.00 2.24
760 784 5.664457 TGCTGTAGATTTGATACTGTGAGG 58.336 41.667 0.00 0.00 0.00 3.86
763 787 6.423302 GCTGTAGATTTGATACTGTGAGGATG 59.577 42.308 0.00 0.00 0.00 3.51
766 790 8.977412 TGTAGATTTGATACTGTGAGGATGTAA 58.023 33.333 0.00 0.00 0.00 2.41
768 792 8.899427 AGATTTGATACTGTGAGGATGTAATG 57.101 34.615 0.00 0.00 0.00 1.90
770 794 9.499479 GATTTGATACTGTGAGGATGTAATGAT 57.501 33.333 0.00 0.00 0.00 2.45
771 795 8.667076 TTTGATACTGTGAGGATGTAATGATG 57.333 34.615 0.00 0.00 0.00 3.07
772 796 7.601705 TGATACTGTGAGGATGTAATGATGA 57.398 36.000 0.00 0.00 0.00 2.92
775 799 9.499479 GATACTGTGAGGATGTAATGATGAATT 57.501 33.333 0.00 0.00 0.00 2.17
776 800 7.563888 ACTGTGAGGATGTAATGATGAATTG 57.436 36.000 0.00 0.00 0.00 2.32
777 801 6.544931 ACTGTGAGGATGTAATGATGAATTGG 59.455 38.462 0.00 0.00 0.00 3.16
778 802 6.425735 TGTGAGGATGTAATGATGAATTGGT 58.574 36.000 0.00 0.00 0.00 3.67
779 803 6.319405 TGTGAGGATGTAATGATGAATTGGTG 59.681 38.462 0.00 0.00 0.00 4.17
780 804 6.543465 GTGAGGATGTAATGATGAATTGGTGA 59.457 38.462 0.00 0.00 0.00 4.02
781 805 7.230108 GTGAGGATGTAATGATGAATTGGTGAT 59.770 37.037 0.00 0.00 0.00 3.06
782 806 7.446319 TGAGGATGTAATGATGAATTGGTGATC 59.554 37.037 0.00 0.00 0.00 2.92
783 807 7.292319 AGGATGTAATGATGAATTGGTGATCA 58.708 34.615 0.00 0.00 0.00 2.92
964 988 0.602638 TCCACCACTGATTGTGCGTC 60.603 55.000 0.00 0.00 44.92 5.19
986 1010 4.785453 GTCTGAGGCCGGCCAAGG 62.785 72.222 45.13 31.68 38.92 3.61
1125 1149 2.625087 CCCCTGGGATTTGCAAGAAGAT 60.625 50.000 16.20 0.00 37.50 2.40
1128 1152 4.340381 CCCTGGGATTTGCAAGAAGATAAG 59.660 45.833 7.01 0.00 0.00 1.73
1129 1153 4.340381 CCTGGGATTTGCAAGAAGATAAGG 59.660 45.833 0.00 0.00 0.00 2.69
1130 1154 4.280819 TGGGATTTGCAAGAAGATAAGGG 58.719 43.478 0.00 0.00 0.00 3.95
1131 1155 3.068732 GGGATTTGCAAGAAGATAAGGGC 59.931 47.826 0.00 0.00 0.00 5.19
1132 1156 3.068732 GGATTTGCAAGAAGATAAGGGCC 59.931 47.826 0.00 0.00 0.00 5.80
1133 1157 2.897271 TTGCAAGAAGATAAGGGCCA 57.103 45.000 6.18 0.00 0.00 5.36
1134 1158 3.386932 TTGCAAGAAGATAAGGGCCAT 57.613 42.857 6.18 0.00 0.00 4.40
1197 1227 1.671054 TGGGCTGTTTGCTAGCGTC 60.671 57.895 10.77 3.50 42.03 5.19
1215 1245 1.026584 TCGGTCTCAAAGTGTCGACA 58.973 50.000 15.76 15.76 0.00 4.35
1224 1254 2.734591 GTGTCGACACCTGCTCCA 59.265 61.111 33.62 0.00 40.85 3.86
1289 1319 6.127925 CCTTTTGCTGATCACTGCATAAAGTA 60.128 38.462 23.64 7.63 46.81 2.24
1329 1359 2.432563 CCAGTTGTTGGGGCCGTA 59.567 61.111 0.00 0.00 43.75 4.02
1331 1361 2.033602 AGTTGTTGGGGCCGTAGC 59.966 61.111 0.00 0.00 38.76 3.58
1334 1364 2.521451 TTGTTGGGGCCGTAGCTGA 61.521 57.895 0.00 0.00 39.73 4.26
1356 1386 0.041238 CTGTGGAGGAGGAGGTGGTA 59.959 60.000 0.00 0.00 0.00 3.25
1431 1461 4.976224 AATTAAGATTGGTAACCCGCAC 57.024 40.909 0.00 0.00 0.00 5.34
1548 1578 3.067742 GCAATGGGGATTCAATGACAGAG 59.932 47.826 0.00 0.00 0.00 3.35
1570 1600 7.173907 CAGAGGTGTTTCAGACAATTATGAAGT 59.826 37.037 1.63 0.00 40.65 3.01
1572 1602 6.147821 AGGTGTTTCAGACAATTATGAAGTCG 59.852 38.462 0.00 0.00 40.65 4.18
1679 1709 1.544724 TGCTACTTGGCAATTCCCAC 58.455 50.000 0.00 0.00 39.43 4.61
1702 1894 7.360946 CCACTAGACCTTGTTGCTAAAATGTAC 60.361 40.741 0.00 0.00 0.00 2.90
1711 1903 7.225784 TGTTGCTAAAATGTACCATGTGATT 57.774 32.000 0.00 0.00 0.00 2.57
1714 1906 9.289303 GTTGCTAAAATGTACCATGTGATTTAG 57.711 33.333 0.00 0.00 33.94 1.85
1757 1949 4.898265 TGATGCTATAGAGGTTCTCTGCTT 59.102 41.667 3.21 1.83 41.37 3.91
1760 1952 7.890655 TGATGCTATAGAGGTTCTCTGCTTATA 59.109 37.037 3.21 0.00 41.37 0.98
1762 1954 8.657387 TGCTATAGAGGTTCTCTGCTTATAAT 57.343 34.615 3.21 0.00 41.37 1.28
1764 1956 7.913297 GCTATAGAGGTTCTCTGCTTATAATCG 59.087 40.741 3.21 0.00 41.37 3.34
1804 1997 7.714813 TGTCTACTTCACTTTCATTTGTGATCA 59.285 33.333 0.00 0.00 41.93 2.92
1811 2004 5.631929 CACTTTCATTTGTGATCATGTGGTG 59.368 40.000 0.00 1.48 36.38 4.17
1980 2173 1.408822 GCACCCAGGCTGCTATTAGTT 60.409 52.381 9.56 0.00 0.00 2.24
1981 2174 2.945890 GCACCCAGGCTGCTATTAGTTT 60.946 50.000 9.56 0.00 0.00 2.66
1994 2187 7.977853 GCTGCTATTAGTTTAGTAGGTGTAACA 59.022 37.037 0.00 0.00 39.98 2.41
2003 2196 8.974238 AGTTTAGTAGGTGTAACAGTATATGCA 58.026 33.333 0.00 0.00 39.98 3.96
2024 2217 5.290643 TGCAATTTGTAAACACAGTTTCTGC 59.709 36.000 0.00 1.98 34.37 4.26
2040 2233 2.745968 TCTGCAAAGGAGTTTGGGTTT 58.254 42.857 0.00 0.00 42.99 3.27
2046 2239 2.586648 AGGAGTTTGGGTTTGCCTAG 57.413 50.000 0.00 0.00 34.45 3.02
2060 2253 1.625315 TGCCTAGCAGTGAGTTGATGT 59.375 47.619 0.00 0.00 33.32 3.06
2079 2280 9.906660 GTTGATGTTTTCCTACATTTGATTACA 57.093 29.630 0.00 0.00 38.80 2.41
2080 2281 9.906660 TTGATGTTTTCCTACATTTGATTACAC 57.093 29.630 0.00 0.00 38.80 2.90
2112 2313 9.082313 AGTTTTGTCTTTCATATGATCAAAGGT 57.918 29.630 6.17 5.37 0.00 3.50
2168 2369 7.342769 TGACACTCTTAACAAAGTCAGACTA 57.657 36.000 2.64 0.00 32.76 2.59
2179 2380 6.357367 ACAAAGTCAGACTATGGACACTTTT 58.643 36.000 2.64 0.00 36.50 2.27
2220 2421 7.652507 ACTCTTAGTTGTTTAGTTCTGCACTAC 59.347 37.037 0.00 0.00 37.74 2.73
2221 2422 7.723324 TCTTAGTTGTTTAGTTCTGCACTACT 58.277 34.615 1.92 1.92 37.74 2.57
2222 2423 8.202137 TCTTAGTTGTTTAGTTCTGCACTACTT 58.798 33.333 1.61 0.00 37.74 2.24
2223 2424 6.846325 AGTTGTTTAGTTCTGCACTACTTC 57.154 37.500 1.61 0.00 37.74 3.01
2224 2425 6.583562 AGTTGTTTAGTTCTGCACTACTTCT 58.416 36.000 1.61 0.00 37.74 2.85
2225 2426 7.723324 AGTTGTTTAGTTCTGCACTACTTCTA 58.277 34.615 1.61 0.00 37.74 2.10
2226 2427 7.868415 AGTTGTTTAGTTCTGCACTACTTCTAG 59.132 37.037 1.61 0.00 37.74 2.43
2227 2428 7.286215 TGTTTAGTTCTGCACTACTTCTAGT 57.714 36.000 1.61 0.00 37.74 2.57
2372 2573 7.919621 GGTTTGACTATTGCTATAGAAGTACGT 59.080 37.037 20.01 0.00 37.70 3.57
2388 2589 4.258543 AGTACGTTGGGTGGTTATGATTG 58.741 43.478 0.00 0.00 0.00 2.67
2451 2656 4.991153 TGTTACACTCAAATTGGTTGCA 57.009 36.364 0.00 0.00 37.13 4.08
2460 2665 5.239525 ACTCAAATTGGTTGCAAGTCTCTAC 59.760 40.000 0.00 0.00 37.13 2.59
2462 2667 1.508632 TTGGTTGCAAGTCTCTACGC 58.491 50.000 0.00 0.00 0.00 4.42
2463 2668 0.320421 TGGTTGCAAGTCTCTACGCC 60.320 55.000 0.00 0.00 0.00 5.68
2472 2677 0.456628 GTCTCTACGCCCAGTTCCTC 59.543 60.000 0.00 0.00 0.00 3.71
2481 2686 1.818642 CCCAGTTCCTCTTCTGCTTG 58.181 55.000 0.00 0.00 0.00 4.01
2483 2688 2.487986 CCCAGTTCCTCTTCTGCTTGTT 60.488 50.000 0.00 0.00 0.00 2.83
2487 2692 5.123027 CCAGTTCCTCTTCTGCTTGTTAATC 59.877 44.000 0.00 0.00 0.00 1.75
2543 2749 6.827586 TCAAACACTTTGTTGTTTACCTCT 57.172 33.333 1.12 0.00 45.85 3.69
2551 2757 8.455682 CACTTTGTTGTTTACCTCTTAAGACAA 58.544 33.333 0.00 1.08 0.00 3.18
2950 3156 3.580458 GTCTGATAGGAGTGGTGCCATAT 59.420 47.826 0.00 0.00 0.00 1.78
2968 3174 0.179119 ATGCCGCGACCAACTACTAC 60.179 55.000 8.23 0.00 0.00 2.73
3118 3324 3.436924 CGCAAGCAGATGCAGGCA 61.437 61.111 17.13 0.00 46.76 4.75
3163 3369 0.586319 ACAAGAACGTGTTCCATGCG 59.414 50.000 9.03 0.00 40.33 4.73
3199 3405 2.687566 AAGGAAGGGATCGGCGGT 60.688 61.111 7.21 0.00 0.00 5.68
3415 3621 8.954350 AGAAAAATTGGATGATCAACTACTCAG 58.046 33.333 0.00 0.00 0.00 3.35
3460 3666 5.644977 TTGAGACACGTCTGTTAGATGAT 57.355 39.130 4.01 0.00 40.61 2.45
3491 3698 5.488341 TGGCCTCTAAATTAGTTCTGTGTC 58.512 41.667 3.32 0.00 0.00 3.67
3583 3792 3.527937 ACTAGCCCTGTTTCTCCCTTTA 58.472 45.455 0.00 0.00 0.00 1.85
3651 3860 7.928307 TCTTTGCTGAAAATAGAAGTGCTAT 57.072 32.000 0.00 0.00 41.59 2.97
3655 3864 5.291858 TGCTGAAAATAGAAGTGCTATGACG 59.708 40.000 0.00 0.00 39.73 4.35
3700 3909 0.736053 GTCACTGCGGTTGGTTGAAA 59.264 50.000 0.00 0.00 0.00 2.69
3701 3910 1.336755 GTCACTGCGGTTGGTTGAAAT 59.663 47.619 0.00 0.00 0.00 2.17
3741 3950 2.254546 TGAGCGGCAACTAATATGGG 57.745 50.000 1.45 0.00 0.00 4.00
3818 4029 4.151867 ACTCGTAACGATTTTTCAGCCTTC 59.848 41.667 0.00 0.00 34.61 3.46
3819 4030 4.312443 TCGTAACGATTTTTCAGCCTTCT 58.688 39.130 0.00 0.00 0.00 2.85
3885 4096 3.175133 AGCCTGGCTTAAATCACCG 57.825 52.632 17.22 0.00 33.89 4.94
3886 4097 0.328258 AGCCTGGCTTAAATCACCGT 59.672 50.000 17.22 0.00 33.89 4.83
3924 4135 1.597663 GCCTGATTTGGGTCGATTACG 59.402 52.381 0.00 0.00 41.26 3.18
3934 4145 0.375803 GTCGATTACGCCCGCAAAAT 59.624 50.000 0.00 0.00 39.58 1.82
3935 4146 1.593933 GTCGATTACGCCCGCAAAATA 59.406 47.619 0.00 0.00 39.58 1.40
3936 4147 1.593933 TCGATTACGCCCGCAAAATAC 59.406 47.619 0.00 0.00 39.58 1.89
3973 4184 1.828595 TGCTGAAATACTACCGCCTGA 59.171 47.619 0.00 0.00 0.00 3.86
4001 4212 9.756571 ATACTACTCCTTAATACTACAGGGATG 57.243 37.037 0.00 0.00 0.00 3.51
4002 4213 7.011382 ACTACTCCTTAATACTACAGGGATGG 58.989 42.308 0.00 0.00 0.00 3.51
4003 4214 5.155905 ACTCCTTAATACTACAGGGATGGG 58.844 45.833 0.00 0.00 0.00 4.00
4004 4215 5.102783 ACTCCTTAATACTACAGGGATGGGA 60.103 44.000 0.00 0.00 0.00 4.37
4005 4216 5.989717 TCCTTAATACTACAGGGATGGGAT 58.010 41.667 0.00 0.00 0.00 3.85
4006 4217 5.785423 TCCTTAATACTACAGGGATGGGATG 59.215 44.000 0.00 0.00 0.00 3.51
4007 4218 5.548056 CCTTAATACTACAGGGATGGGATGT 59.452 44.000 0.00 0.00 0.00 3.06
4008 4219 6.729100 CCTTAATACTACAGGGATGGGATGTA 59.271 42.308 0.00 0.00 0.00 2.29
4009 4220 7.236847 CCTTAATACTACAGGGATGGGATGTAA 59.763 40.741 0.00 0.00 0.00 2.41
4010 4221 6.688073 AATACTACAGGGATGGGATGTAAG 57.312 41.667 0.00 0.00 0.00 2.34
4011 4222 2.706190 ACTACAGGGATGGGATGTAAGC 59.294 50.000 0.00 0.00 0.00 3.09
4012 4223 0.846693 ACAGGGATGGGATGTAAGCC 59.153 55.000 0.00 0.00 46.17 4.35
4013 4224 1.143813 CAGGGATGGGATGTAAGCCT 58.856 55.000 0.00 0.00 46.10 4.58
4014 4225 1.496429 CAGGGATGGGATGTAAGCCTT 59.504 52.381 0.00 0.00 46.10 4.35
4015 4226 1.496429 AGGGATGGGATGTAAGCCTTG 59.504 52.381 0.00 0.00 46.10 3.61
4016 4227 1.479389 GGGATGGGATGTAAGCCTTGG 60.479 57.143 0.00 0.00 46.10 3.61
4017 4228 1.322442 GATGGGATGTAAGCCTTGGC 58.678 55.000 2.97 2.97 46.10 4.52
4018 4229 0.929244 ATGGGATGTAAGCCTTGGCT 59.071 50.000 8.56 8.56 46.10 4.75
4019 4230 0.255890 TGGGATGTAAGCCTTGGCTC 59.744 55.000 15.10 4.05 46.10 4.70
4020 4231 0.255890 GGGATGTAAGCCTTGGCTCA 59.744 55.000 15.10 9.87 46.10 4.26
4021 4232 1.340991 GGGATGTAAGCCTTGGCTCAA 60.341 52.381 15.10 3.65 46.10 3.02
4022 4233 2.659428 GGATGTAAGCCTTGGCTCAAT 58.341 47.619 15.10 8.74 41.12 2.57
4023 4234 2.360165 GGATGTAAGCCTTGGCTCAATG 59.640 50.000 15.10 0.00 41.12 2.82
4024 4235 1.838112 TGTAAGCCTTGGCTCAATGG 58.162 50.000 15.10 0.00 0.00 3.16
4025 4236 1.075374 TGTAAGCCTTGGCTCAATGGT 59.925 47.619 15.10 0.51 0.00 3.55
4026 4237 2.307392 TGTAAGCCTTGGCTCAATGGTA 59.693 45.455 15.10 0.00 0.00 3.25
4027 4238 2.134789 AAGCCTTGGCTCAATGGTAG 57.865 50.000 15.10 0.00 0.00 3.18
4028 4239 1.289160 AGCCTTGGCTCAATGGTAGA 58.711 50.000 8.56 0.00 0.00 2.59
4029 4240 1.065126 AGCCTTGGCTCAATGGTAGAC 60.065 52.381 8.56 0.00 0.00 2.59
4030 4241 1.340017 GCCTTGGCTCAATGGTAGACA 60.340 52.381 4.11 0.00 0.00 3.41
4031 4242 2.879756 GCCTTGGCTCAATGGTAGACAA 60.880 50.000 4.11 0.00 39.68 3.18
4032 4243 2.749621 CCTTGGCTCAATGGTAGACAAC 59.250 50.000 0.00 0.00 37.05 3.32
4033 4244 3.411446 CTTGGCTCAATGGTAGACAACA 58.589 45.455 0.00 0.00 37.05 3.33
4034 4245 2.778299 TGGCTCAATGGTAGACAACAC 58.222 47.619 0.00 0.00 0.00 3.32
4035 4246 2.371841 TGGCTCAATGGTAGACAACACT 59.628 45.455 0.00 0.00 0.00 3.55
4036 4247 3.580895 TGGCTCAATGGTAGACAACACTA 59.419 43.478 0.00 0.00 0.00 2.74
4037 4248 4.225042 TGGCTCAATGGTAGACAACACTAT 59.775 41.667 0.00 0.00 0.00 2.12
4038 4249 4.572389 GGCTCAATGGTAGACAACACTATG 59.428 45.833 0.00 0.00 0.00 2.23
4039 4250 4.572389 GCTCAATGGTAGACAACACTATGG 59.428 45.833 0.00 0.00 0.00 2.74
4040 4251 5.734720 CTCAATGGTAGACAACACTATGGT 58.265 41.667 0.00 0.00 0.00 3.55
4041 4252 6.121776 TCAATGGTAGACAACACTATGGTT 57.878 37.500 0.00 0.00 0.00 3.67
4051 4262 3.526931 ACACTATGGTTGATGTCTCCG 57.473 47.619 0.00 0.00 0.00 4.63
4052 4263 3.096852 ACACTATGGTTGATGTCTCCGA 58.903 45.455 0.00 0.00 0.00 4.55
4053 4264 3.119101 ACACTATGGTTGATGTCTCCGAC 60.119 47.826 0.00 0.00 0.00 4.79
4054 4265 2.431057 ACTATGGTTGATGTCTCCGACC 59.569 50.000 0.00 0.00 0.00 4.79
4055 4266 1.275666 ATGGTTGATGTCTCCGACCA 58.724 50.000 4.86 4.86 39.49 4.02
4056 4267 0.608130 TGGTTGATGTCTCCGACCAG 59.392 55.000 0.00 0.00 33.87 4.00
4057 4268 0.108138 GGTTGATGTCTCCGACCAGG 60.108 60.000 0.00 0.00 42.97 4.45
4058 4269 0.741221 GTTGATGTCTCCGACCAGGC 60.741 60.000 0.00 0.00 40.77 4.85
4059 4270 0.904865 TTGATGTCTCCGACCAGGCT 60.905 55.000 0.00 0.00 40.77 4.58
4060 4271 0.904865 TGATGTCTCCGACCAGGCTT 60.905 55.000 0.00 0.00 40.77 4.35
4061 4272 0.179097 GATGTCTCCGACCAGGCTTC 60.179 60.000 0.00 0.00 40.77 3.86
4062 4273 1.949847 ATGTCTCCGACCAGGCTTCG 61.950 60.000 1.63 1.63 40.77 3.79
4063 4274 2.035155 TCTCCGACCAGGCTTCGA 59.965 61.111 10.05 0.00 38.85 3.71
4064 4275 2.182030 CTCCGACCAGGCTTCGAC 59.818 66.667 10.05 0.00 38.85 4.20
4065 4276 3.685214 CTCCGACCAGGCTTCGACG 62.685 68.421 10.05 3.52 38.85 5.12
4066 4277 4.052229 CCGACCAGGCTTCGACGT 62.052 66.667 10.05 0.00 38.85 4.34
4067 4278 2.504244 CGACCAGGCTTCGACGTC 60.504 66.667 5.18 5.18 38.85 4.34
4068 4279 2.126031 GACCAGGCTTCGACGTCC 60.126 66.667 10.58 0.00 0.00 4.79
4069 4280 3.644399 GACCAGGCTTCGACGTCCC 62.644 68.421 10.58 5.14 0.00 4.46
4070 4281 3.691342 CCAGGCTTCGACGTCCCA 61.691 66.667 10.58 0.00 0.00 4.37
4071 4282 2.432628 CAGGCTTCGACGTCCCAC 60.433 66.667 10.58 0.00 0.00 4.61
4072 4283 2.600769 AGGCTTCGACGTCCCACT 60.601 61.111 10.58 0.00 0.00 4.00
4073 4284 2.126031 GGCTTCGACGTCCCACTC 60.126 66.667 10.58 0.00 0.00 3.51
4074 4285 2.637383 GGCTTCGACGTCCCACTCT 61.637 63.158 10.58 0.00 0.00 3.24
4075 4286 1.153997 GCTTCGACGTCCCACTCTC 60.154 63.158 10.58 0.00 0.00 3.20
4076 4287 1.134901 CTTCGACGTCCCACTCTCG 59.865 63.158 10.58 0.00 0.00 4.04
4077 4288 2.254703 CTTCGACGTCCCACTCTCGG 62.255 65.000 10.58 0.00 0.00 4.63
4078 4289 2.736579 TTCGACGTCCCACTCTCGGA 62.737 60.000 10.58 0.00 0.00 4.55
4079 4290 2.751913 CGACGTCCCACTCTCGGAG 61.752 68.421 10.58 0.00 35.52 4.63
4080 4291 1.674980 GACGTCCCACTCTCGGAGT 60.675 63.158 3.51 1.23 44.44 3.85
4081 4292 1.228490 ACGTCCCACTCTCGGAGTT 60.228 57.895 4.69 0.00 41.37 3.01
4082 4293 0.826672 ACGTCCCACTCTCGGAGTTT 60.827 55.000 4.69 0.00 41.37 2.66
4083 4294 0.317479 CGTCCCACTCTCGGAGTTTT 59.683 55.000 4.69 0.00 41.37 2.43
4084 4295 1.669211 CGTCCCACTCTCGGAGTTTTC 60.669 57.143 4.69 0.00 41.37 2.29
4085 4296 1.619332 GTCCCACTCTCGGAGTTTTCT 59.381 52.381 4.69 0.00 41.37 2.52
4086 4297 1.893801 TCCCACTCTCGGAGTTTTCTC 59.106 52.381 4.69 0.00 41.37 2.87
4120 4331 3.439440 GGGGGTGGCATCTAATTCC 57.561 57.895 0.00 0.00 0.00 3.01
4121 4332 0.178961 GGGGGTGGCATCTAATTCCC 60.179 60.000 0.00 0.00 34.68 3.97
4122 4333 0.178961 GGGGTGGCATCTAATTCCCC 60.179 60.000 10.08 10.08 46.11 4.81
4123 4334 0.853530 GGGTGGCATCTAATTCCCCT 59.146 55.000 0.00 0.00 0.00 4.79
4124 4335 1.202940 GGGTGGCATCTAATTCCCCTC 60.203 57.143 0.00 0.00 0.00 4.30
4125 4336 1.202940 GGTGGCATCTAATTCCCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
4126 4337 1.149101 TGGCATCTAATTCCCCTCCC 58.851 55.000 0.00 0.00 0.00 4.30
4127 4338 0.405973 GGCATCTAATTCCCCTCCCC 59.594 60.000 0.00 0.00 0.00 4.81
4128 4339 0.036875 GCATCTAATTCCCCTCCCCG 59.963 60.000 0.00 0.00 0.00 5.73
4129 4340 1.435256 CATCTAATTCCCCTCCCCGT 58.565 55.000 0.00 0.00 0.00 5.28
4130 4341 1.348036 CATCTAATTCCCCTCCCCGTC 59.652 57.143 0.00 0.00 0.00 4.79
4131 4342 0.399519 TCTAATTCCCCTCCCCGTCC 60.400 60.000 0.00 0.00 0.00 4.79
4132 4343 0.400093 CTAATTCCCCTCCCCGTCCT 60.400 60.000 0.00 0.00 0.00 3.85
4133 4344 0.693092 TAATTCCCCTCCCCGTCCTG 60.693 60.000 0.00 0.00 0.00 3.86
4134 4345 2.782997 AATTCCCCTCCCCGTCCTGT 62.783 60.000 0.00 0.00 0.00 4.00
4135 4346 2.782997 ATTCCCCTCCCCGTCCTGTT 62.783 60.000 0.00 0.00 0.00 3.16
4136 4347 2.933834 CCCCTCCCCGTCCTGTTT 60.934 66.667 0.00 0.00 0.00 2.83
4137 4348 2.669240 CCCTCCCCGTCCTGTTTC 59.331 66.667 0.00 0.00 0.00 2.78
4138 4349 1.918800 CCCTCCCCGTCCTGTTTCT 60.919 63.158 0.00 0.00 0.00 2.52
4139 4350 1.489560 CCCTCCCCGTCCTGTTTCTT 61.490 60.000 0.00 0.00 0.00 2.52
4140 4351 1.272807 CCTCCCCGTCCTGTTTCTTA 58.727 55.000 0.00 0.00 0.00 2.10
4141 4352 1.207329 CCTCCCCGTCCTGTTTCTTAG 59.793 57.143 0.00 0.00 0.00 2.18
4142 4353 1.900486 CTCCCCGTCCTGTTTCTTAGT 59.100 52.381 0.00 0.00 0.00 2.24
4143 4354 3.094572 CTCCCCGTCCTGTTTCTTAGTA 58.905 50.000 0.00 0.00 0.00 1.82
4144 4355 2.827921 TCCCCGTCCTGTTTCTTAGTAC 59.172 50.000 0.00 0.00 0.00 2.73
4145 4356 2.830321 CCCCGTCCTGTTTCTTAGTACT 59.170 50.000 0.00 0.00 0.00 2.73
4146 4357 4.019174 CCCCGTCCTGTTTCTTAGTACTA 58.981 47.826 0.00 0.00 0.00 1.82
4147 4358 4.142293 CCCCGTCCTGTTTCTTAGTACTAC 60.142 50.000 0.91 0.00 0.00 2.73
4148 4359 4.460382 CCCGTCCTGTTTCTTAGTACTACA 59.540 45.833 0.91 0.00 0.00 2.74
4149 4360 5.392811 CCCGTCCTGTTTCTTAGTACTACAG 60.393 48.000 13.58 13.58 36.77 2.74
4161 4372 9.750783 TTCTTAGTACTACAGGAATACAAGAGT 57.249 33.333 0.91 0.00 0.00 3.24
4166 4377 9.924010 AGTACTACAGGAATACAAGAGTAGATT 57.076 33.333 0.00 0.00 34.56 2.40
4169 4380 9.256228 ACTACAGGAATACAAGAGTAGATTTCA 57.744 33.333 0.00 0.00 34.56 2.69
4172 4383 9.220767 ACAGGAATACAAGAGTAGATTTCAAAC 57.779 33.333 0.00 0.00 32.86 2.93
4173 4384 9.442047 CAGGAATACAAGAGTAGATTTCAAACT 57.558 33.333 0.00 0.00 32.86 2.66
4180 4391 9.847224 ACAAGAGTAGATTTCAAACTTTTAGGA 57.153 29.630 0.00 0.00 0.00 2.94
4182 4393 8.850007 AGAGTAGATTTCAAACTTTTAGGACC 57.150 34.615 0.00 0.00 0.00 4.46
4183 4394 8.437575 AGAGTAGATTTCAAACTTTTAGGACCA 58.562 33.333 0.00 0.00 0.00 4.02
4184 4395 8.622948 AGTAGATTTCAAACTTTTAGGACCAG 57.377 34.615 0.00 0.00 0.00 4.00
4185 4396 6.332735 AGATTTCAAACTTTTAGGACCAGC 57.667 37.500 0.00 0.00 0.00 4.85
4186 4397 5.833131 AGATTTCAAACTTTTAGGACCAGCA 59.167 36.000 0.00 0.00 0.00 4.41
4187 4398 5.514274 TTTCAAACTTTTAGGACCAGCAG 57.486 39.130 0.00 0.00 0.00 4.24
4188 4399 4.164843 TCAAACTTTTAGGACCAGCAGT 57.835 40.909 0.00 0.00 0.00 4.40
4189 4400 3.882888 TCAAACTTTTAGGACCAGCAGTG 59.117 43.478 0.00 0.00 0.00 3.66
4190 4401 3.857157 AACTTTTAGGACCAGCAGTGA 57.143 42.857 0.00 0.00 0.00 3.41
4191 4402 3.857157 ACTTTTAGGACCAGCAGTGAA 57.143 42.857 0.00 0.00 0.00 3.18
4192 4403 3.477530 ACTTTTAGGACCAGCAGTGAAC 58.522 45.455 0.00 0.00 0.00 3.18
4193 4404 2.163818 TTTAGGACCAGCAGTGAACG 57.836 50.000 0.00 0.00 0.00 3.95
4194 4405 1.334160 TTAGGACCAGCAGTGAACGA 58.666 50.000 0.00 0.00 0.00 3.85
4195 4406 1.557099 TAGGACCAGCAGTGAACGAT 58.443 50.000 0.00 0.00 0.00 3.73
4196 4407 0.687354 AGGACCAGCAGTGAACGATT 59.313 50.000 0.00 0.00 0.00 3.34
4197 4408 1.072331 AGGACCAGCAGTGAACGATTT 59.928 47.619 0.00 0.00 0.00 2.17
4198 4409 1.880027 GGACCAGCAGTGAACGATTTT 59.120 47.619 0.00 0.00 0.00 1.82
4199 4410 3.071479 GGACCAGCAGTGAACGATTTTA 58.929 45.455 0.00 0.00 0.00 1.52
4200 4411 3.500680 GGACCAGCAGTGAACGATTTTAA 59.499 43.478 0.00 0.00 0.00 1.52
4201 4412 4.023536 GGACCAGCAGTGAACGATTTTAAA 60.024 41.667 0.00 0.00 0.00 1.52
4202 4413 4.855531 ACCAGCAGTGAACGATTTTAAAC 58.144 39.130 0.00 0.00 0.00 2.01
4203 4414 4.578928 ACCAGCAGTGAACGATTTTAAACT 59.421 37.500 0.00 0.00 0.00 2.66
4204 4415 5.067283 ACCAGCAGTGAACGATTTTAAACTT 59.933 36.000 0.00 0.00 0.00 2.66
4205 4416 5.977129 CCAGCAGTGAACGATTTTAAACTTT 59.023 36.000 0.00 0.00 0.00 2.66
4206 4417 6.475402 CCAGCAGTGAACGATTTTAAACTTTT 59.525 34.615 0.00 0.00 0.00 2.27
4207 4418 7.646130 CCAGCAGTGAACGATTTTAAACTTTTA 59.354 33.333 0.00 0.00 0.00 1.52
4208 4419 8.682016 CAGCAGTGAACGATTTTAAACTTTTAG 58.318 33.333 0.00 0.00 0.00 1.85
4209 4420 7.860872 AGCAGTGAACGATTTTAAACTTTTAGG 59.139 33.333 0.00 0.00 0.00 2.69
4210 4421 7.358105 GCAGTGAACGATTTTAAACTTTTAGGC 60.358 37.037 0.00 0.00 0.00 3.93
4211 4422 7.114388 CAGTGAACGATTTTAAACTTTTAGGCC 59.886 37.037 0.00 0.00 0.00 5.19
4212 4423 7.013942 AGTGAACGATTTTAAACTTTTAGGCCT 59.986 33.333 11.78 11.78 0.00 5.19
4213 4424 7.325338 GTGAACGATTTTAAACTTTTAGGCCTC 59.675 37.037 9.68 0.00 0.00 4.70
4214 4425 6.263516 ACGATTTTAAACTTTTAGGCCTCC 57.736 37.500 9.68 0.00 0.00 4.30
4215 4426 6.008331 ACGATTTTAAACTTTTAGGCCTCCT 58.992 36.000 9.68 0.00 37.71 3.69
4216 4427 6.492429 ACGATTTTAAACTTTTAGGCCTCCTT 59.508 34.615 9.68 0.00 34.61 3.36
4217 4428 7.014905 ACGATTTTAAACTTTTAGGCCTCCTTT 59.985 33.333 9.68 3.37 34.61 3.11
4218 4429 7.328493 CGATTTTAAACTTTTAGGCCTCCTTTG 59.672 37.037 9.68 0.00 34.61 2.77
4219 4430 6.413783 TTTAAACTTTTAGGCCTCCTTTGG 57.586 37.500 9.68 0.00 34.61 3.28
4220 4431 3.612795 AACTTTTAGGCCTCCTTTGGT 57.387 42.857 9.68 0.00 34.61 3.67
4221 4432 3.612795 ACTTTTAGGCCTCCTTTGGTT 57.387 42.857 9.68 0.00 34.61 3.67
4222 4433 3.923648 ACTTTTAGGCCTCCTTTGGTTT 58.076 40.909 9.68 0.00 34.61 3.27
4223 4434 3.641436 ACTTTTAGGCCTCCTTTGGTTTG 59.359 43.478 9.68 0.00 34.61 2.93
4224 4435 3.322191 TTTAGGCCTCCTTTGGTTTGT 57.678 42.857 9.68 0.00 34.61 2.83
4225 4436 4.456662 TTTAGGCCTCCTTTGGTTTGTA 57.543 40.909 9.68 0.00 34.61 2.41
4226 4437 2.586648 AGGCCTCCTTTGGTTTGTAG 57.413 50.000 0.00 0.00 0.00 2.74
4227 4438 1.075536 AGGCCTCCTTTGGTTTGTAGG 59.924 52.381 0.00 0.00 0.00 3.18
4228 4439 1.074889 GGCCTCCTTTGGTTTGTAGGA 59.925 52.381 0.00 0.00 36.65 2.94
4229 4440 2.291605 GGCCTCCTTTGGTTTGTAGGAT 60.292 50.000 0.00 0.00 37.44 3.24
4230 4441 3.431415 GCCTCCTTTGGTTTGTAGGATT 58.569 45.455 0.00 0.00 37.44 3.01
4231 4442 3.832490 GCCTCCTTTGGTTTGTAGGATTT 59.168 43.478 0.00 0.00 37.44 2.17
4232 4443 4.283467 GCCTCCTTTGGTTTGTAGGATTTT 59.717 41.667 0.00 0.00 37.44 1.82
4233 4444 5.221641 GCCTCCTTTGGTTTGTAGGATTTTT 60.222 40.000 0.00 0.00 37.44 1.94
4234 4445 6.014925 GCCTCCTTTGGTTTGTAGGATTTTTA 60.015 38.462 0.00 0.00 37.44 1.52
4235 4446 7.310423 GCCTCCTTTGGTTTGTAGGATTTTTAT 60.310 37.037 0.00 0.00 37.44 1.40
4236 4447 9.250246 CCTCCTTTGGTTTGTAGGATTTTTATA 57.750 33.333 0.00 0.00 37.44 0.98
4238 4449 9.250246 TCCTTTGGTTTGTAGGATTTTTATAGG 57.750 33.333 0.00 0.00 33.23 2.57
4239 4450 8.474831 CCTTTGGTTTGTAGGATTTTTATAGGG 58.525 37.037 0.00 0.00 0.00 3.53
4240 4451 9.250246 CTTTGGTTTGTAGGATTTTTATAGGGA 57.750 33.333 0.00 0.00 0.00 4.20
4241 4452 9.777008 TTTGGTTTGTAGGATTTTTATAGGGAT 57.223 29.630 0.00 0.00 0.00 3.85
4242 4453 9.777008 TTGGTTTGTAGGATTTTTATAGGGATT 57.223 29.630 0.00 0.00 0.00 3.01
4243 4454 9.416284 TGGTTTGTAGGATTTTTATAGGGATTC 57.584 33.333 0.00 0.00 0.00 2.52
4244 4455 9.642343 GGTTTGTAGGATTTTTATAGGGATTCT 57.358 33.333 0.00 0.00 0.00 2.40
4262 4473 9.411848 AGGGATTCTATAGGATAGGATTTTTGT 57.588 33.333 0.00 0.00 0.00 2.83
4283 4494 9.705290 TTTTGTATGAAAAATTCCTTTAGAGCC 57.295 29.630 0.00 0.00 0.00 4.70
4284 4495 7.404671 TGTATGAAAAATTCCTTTAGAGCCC 57.595 36.000 0.00 0.00 0.00 5.19
4285 4496 7.182060 TGTATGAAAAATTCCTTTAGAGCCCT 58.818 34.615 0.00 0.00 0.00 5.19
4286 4497 7.673926 TGTATGAAAAATTCCTTTAGAGCCCTT 59.326 33.333 0.00 0.00 0.00 3.95
4287 4498 6.994421 TGAAAAATTCCTTTAGAGCCCTTT 57.006 33.333 0.00 0.00 0.00 3.11
4288 4499 6.758254 TGAAAAATTCCTTTAGAGCCCTTTG 58.242 36.000 0.00 0.00 0.00 2.77
4289 4500 5.745312 AAAATTCCTTTAGAGCCCTTTGG 57.255 39.130 0.00 0.00 0.00 3.28
4290 4501 4.404185 AATTCCTTTAGAGCCCTTTGGT 57.596 40.909 0.00 0.00 0.00 3.67
4291 4502 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
4292 4503 3.895704 TCCTTTAGAGCCCTTTGGTTT 57.104 42.857 0.00 0.00 0.00 3.27
4293 4504 3.496331 TCCTTTAGAGCCCTTTGGTTTG 58.504 45.455 0.00 0.00 0.00 2.93
4294 4505 3.117284 TCCTTTAGAGCCCTTTGGTTTGT 60.117 43.478 0.00 0.00 0.00 2.83
4295 4506 4.105057 TCCTTTAGAGCCCTTTGGTTTGTA 59.895 41.667 0.00 0.00 0.00 2.41
4296 4507 4.217767 CCTTTAGAGCCCTTTGGTTTGTAC 59.782 45.833 0.00 0.00 0.00 2.90
4297 4508 4.440826 TTAGAGCCCTTTGGTTTGTACA 57.559 40.909 0.00 0.00 0.00 2.90
4298 4509 2.583143 AGAGCCCTTTGGTTTGTACAC 58.417 47.619 0.00 0.00 0.00 2.90
4299 4510 2.092103 AGAGCCCTTTGGTTTGTACACA 60.092 45.455 0.00 0.00 0.00 3.72
4300 4511 2.028876 AGCCCTTTGGTTTGTACACAC 58.971 47.619 3.45 3.45 0.00 3.82
4301 4512 1.751924 GCCCTTTGGTTTGTACACACA 59.248 47.619 13.84 2.14 0.00 3.72
4302 4513 2.480587 GCCCTTTGGTTTGTACACACAC 60.481 50.000 13.84 4.46 33.30 3.82
4303 4514 2.755655 CCCTTTGGTTTGTACACACACA 59.244 45.455 13.84 6.82 33.30 3.72
4304 4515 3.383185 CCCTTTGGTTTGTACACACACAT 59.617 43.478 13.84 0.00 33.30 3.21
4305 4516 4.358851 CCTTTGGTTTGTACACACACATG 58.641 43.478 13.84 0.00 33.30 3.21
4306 4517 4.142271 CCTTTGGTTTGTACACACACATGT 60.142 41.667 13.84 0.00 40.80 3.21
4307 4518 5.392767 TTTGGTTTGTACACACACATGTT 57.607 34.783 13.84 0.00 36.72 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 102 4.664677 AGTGTCGCCACGGTGCTC 62.665 66.667 1.68 0.00 46.56 4.26
95 103 4.969196 CAGTGTCGCCACGGTGCT 62.969 66.667 1.68 0.00 46.56 4.40
172 180 2.844839 AGAGCGGGTATGGAGGGC 60.845 66.667 0.00 0.00 0.00 5.19
173 181 3.142393 CAGAGCGGGTATGGAGGG 58.858 66.667 0.00 0.00 0.00 4.30
174 182 2.423446 GCAGAGCGGGTATGGAGG 59.577 66.667 3.84 0.00 0.00 4.30
175 183 2.423446 GGCAGAGCGGGTATGGAG 59.577 66.667 3.84 0.00 0.00 3.86
176 184 3.161450 GGGCAGAGCGGGTATGGA 61.161 66.667 3.84 0.00 0.00 3.41
179 187 3.849951 CACGGGCAGAGCGGGTAT 61.850 66.667 0.00 0.00 0.00 2.73
214 225 1.410648 CCAAATATGTGCTGCTCCCCT 60.411 52.381 0.00 0.00 0.00 4.79
219 230 3.127548 CGTTTCTCCAAATATGTGCTGCT 59.872 43.478 0.00 0.00 0.00 4.24
228 239 6.996509 ACTACCTGTAACGTTTCTCCAAATA 58.003 36.000 5.91 0.00 0.00 1.40
235 246 9.798994 CAGAATTATACTACCTGTAACGTTTCT 57.201 33.333 5.91 0.00 34.45 2.52
248 259 5.120830 CCATGGAAGCGCAGAATTATACTAC 59.879 44.000 11.47 0.00 0.00 2.73
249 260 5.237815 CCATGGAAGCGCAGAATTATACTA 58.762 41.667 11.47 0.00 0.00 1.82
250 261 4.067896 CCATGGAAGCGCAGAATTATACT 58.932 43.478 11.47 0.00 0.00 2.12
251 262 3.189287 CCCATGGAAGCGCAGAATTATAC 59.811 47.826 15.22 0.00 0.00 1.47
253 264 2.233271 CCCATGGAAGCGCAGAATTAT 58.767 47.619 15.22 0.00 0.00 1.28
254 265 1.679139 CCCATGGAAGCGCAGAATTA 58.321 50.000 15.22 0.00 0.00 1.40
255 266 1.039233 CCCCATGGAAGCGCAGAATT 61.039 55.000 15.22 0.00 0.00 2.17
303 314 4.801330 TGCGTAATATAGGGACAGGATG 57.199 45.455 0.00 0.00 46.00 3.51
510 521 3.474570 CAGGAAGGAGGGAGGCGG 61.475 72.222 0.00 0.00 0.00 6.13
555 566 3.902086 GGTCGCCGGAGTAGCTCC 61.902 72.222 5.05 5.15 46.44 4.70
601 612 2.764547 GGGGAGGAAGGAGGACGG 60.765 72.222 0.00 0.00 0.00 4.79
608 619 0.692756 GGAAGGAGAGGGGAGGAAGG 60.693 65.000 0.00 0.00 0.00 3.46
610 621 0.800239 AAGGAAGGAGAGGGGAGGAA 59.200 55.000 0.00 0.00 0.00 3.36
619 635 0.800239 AGGAAGGGGAAGGAAGGAGA 59.200 55.000 0.00 0.00 0.00 3.71
629 645 1.229853 GAGGTGGGAAGGAAGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
634 650 0.196118 AGGGAAGAGGTGGGAAGGAA 59.804 55.000 0.00 0.00 0.00 3.36
637 653 1.488393 GATGAGGGAAGAGGTGGGAAG 59.512 57.143 0.00 0.00 0.00 3.46
662 678 0.253347 ATGCAGGAGGAAGGAGGGAA 60.253 55.000 0.00 0.00 0.00 3.97
671 687 1.280133 CAAACAGAGGATGCAGGAGGA 59.720 52.381 0.00 0.00 0.00 3.71
676 692 3.144506 ACTGAACAAACAGAGGATGCAG 58.855 45.455 0.00 0.00 40.63 4.41
716 740 7.495934 ACAGCAAGTACTCATCCAATACAATAC 59.504 37.037 0.00 0.00 0.00 1.89
718 742 6.418101 ACAGCAAGTACTCATCCAATACAAT 58.582 36.000 0.00 0.00 0.00 2.71
719 743 5.804639 ACAGCAAGTACTCATCCAATACAA 58.195 37.500 0.00 0.00 0.00 2.41
720 744 5.420725 ACAGCAAGTACTCATCCAATACA 57.579 39.130 0.00 0.00 0.00 2.29
721 745 6.806751 TCTACAGCAAGTACTCATCCAATAC 58.193 40.000 0.00 0.00 0.00 1.89
736 760 6.070824 TCCTCACAGTATCAAATCTACAGCAA 60.071 38.462 0.00 0.00 0.00 3.91
753 777 6.544931 ACCAATTCATCATTACATCCTCACAG 59.455 38.462 0.00 0.00 0.00 3.66
760 784 9.622004 GAATGATCACCAATTCATCATTACATC 57.378 33.333 0.00 0.00 43.95 3.06
763 787 9.459640 CAAGAATGATCACCAATTCATCATTAC 57.540 33.333 0.00 2.44 43.95 1.89
766 790 7.891498 TCAAGAATGATCACCAATTCATCAT 57.109 32.000 0.00 0.00 38.63 2.45
768 792 7.937649 TCATCAAGAATGATCACCAATTCATC 58.062 34.615 0.00 0.00 44.53 2.92
770 794 6.888088 ACTCATCAAGAATGATCACCAATTCA 59.112 34.615 0.00 0.00 44.53 2.57
771 795 7.330900 ACTCATCAAGAATGATCACCAATTC 57.669 36.000 0.00 0.00 44.53 2.17
772 796 8.051535 AGTACTCATCAAGAATGATCACCAATT 58.948 33.333 0.00 0.00 44.53 2.32
775 799 6.550938 AGTACTCATCAAGAATGATCACCA 57.449 37.500 0.00 0.00 44.53 4.17
776 800 6.238320 GCAAGTACTCATCAAGAATGATCACC 60.238 42.308 0.00 0.00 44.53 4.02
777 801 6.238320 GGCAAGTACTCATCAAGAATGATCAC 60.238 42.308 0.00 0.00 44.53 3.06
778 802 5.819379 GGCAAGTACTCATCAAGAATGATCA 59.181 40.000 0.00 0.00 44.53 2.92
779 803 5.050499 CGGCAAGTACTCATCAAGAATGATC 60.050 44.000 0.00 0.00 44.53 2.92
781 805 4.183865 CGGCAAGTACTCATCAAGAATGA 58.816 43.478 0.00 0.00 42.21 2.57
782 806 3.242543 GCGGCAAGTACTCATCAAGAATG 60.243 47.826 0.00 0.00 36.65 2.67
783 807 2.939103 GCGGCAAGTACTCATCAAGAAT 59.061 45.455 0.00 0.00 0.00 2.40
802 826 3.379372 AGATGAACTGGGAAAATCATGCG 59.621 43.478 0.00 0.00 32.90 4.73
865 889 1.885388 TTCGACACCACCAACGCAG 60.885 57.895 0.00 0.00 0.00 5.18
1131 1155 4.723309 AGCTTAATGAGAAGGCCTTATGG 58.277 43.478 19.41 4.14 0.00 2.74
1132 1156 5.506982 GCAAGCTTAATGAGAAGGCCTTATG 60.507 44.000 19.41 2.65 0.00 1.90
1133 1157 4.582240 GCAAGCTTAATGAGAAGGCCTTAT 59.418 41.667 20.54 17.12 0.00 1.73
1134 1158 3.947834 GCAAGCTTAATGAGAAGGCCTTA 59.052 43.478 20.54 2.73 0.00 2.69
1197 1227 1.129326 GTGTCGACACTTTGAGACCG 58.871 55.000 35.51 0.00 43.25 4.79
1224 1254 2.920645 CGGACTGGTCGACACTGCT 61.921 63.158 18.91 2.63 0.00 4.24
1289 1319 2.485582 CGACTGCCGACGAGACAT 59.514 61.111 0.00 0.00 41.76 3.06
1329 1359 0.614415 CCTCCTCCACAGACTCAGCT 60.614 60.000 0.00 0.00 0.00 4.24
1331 1361 1.473258 CTCCTCCTCCACAGACTCAG 58.527 60.000 0.00 0.00 0.00 3.35
1334 1364 0.252012 CACCTCCTCCTCCACAGACT 60.252 60.000 0.00 0.00 0.00 3.24
1356 1386 8.798975 TCTTCCTAATAATCTTACCATCCACT 57.201 34.615 0.00 0.00 0.00 4.00
1431 1461 1.021390 CACTAACCAGCCGCCTCAAG 61.021 60.000 0.00 0.00 0.00 3.02
1548 1578 6.307155 CGACTTCATAATTGTCTGAAACACC 58.693 40.000 0.00 0.00 37.70 4.16
1602 1632 6.378582 AGCAACACGGATAACATTTACAAAG 58.621 36.000 0.00 0.00 0.00 2.77
1679 1709 6.653320 TGGTACATTTTAGCAACAAGGTCTAG 59.347 38.462 0.00 0.00 0.00 2.43
1702 1894 2.696707 AGGCATTGGCTAAATCACATGG 59.303 45.455 11.57 0.00 40.87 3.66
1725 1917 5.788450 ACCTCTATAGCATCAGCAATACAC 58.212 41.667 0.00 0.00 45.49 2.90
1760 1952 8.937207 AGTAGACACCCTATAGTAAATCGATT 57.063 34.615 4.39 4.39 0.00 3.34
1762 1954 7.994911 TGAAGTAGACACCCTATAGTAAATCGA 59.005 37.037 0.00 0.00 0.00 3.59
1764 1956 9.134055 AGTGAAGTAGACACCCTATAGTAAATC 57.866 37.037 0.00 0.00 38.82 2.17
1782 1975 8.291740 CACATGATCACAAATGAAAGTGAAGTA 58.708 33.333 0.00 0.00 46.62 2.24
1804 1997 3.892284 TGAAAACTACACCACACCACAT 58.108 40.909 0.00 0.00 0.00 3.21
1854 2047 3.616219 ACTGAAGGTTGTTGTAAGTGCA 58.384 40.909 0.00 0.00 0.00 4.57
1855 2048 4.632538 AACTGAAGGTTGTTGTAAGTGC 57.367 40.909 0.00 0.00 36.70 4.40
1896 2089 1.225704 GCCCTCCTCCCACATCAAG 59.774 63.158 0.00 0.00 0.00 3.02
2003 2196 7.064490 CCTTTGCAGAAACTGTGTTTACAAATT 59.936 33.333 13.59 0.00 36.14 1.82
2024 2217 1.762370 AGGCAAACCCAAACTCCTTTG 59.238 47.619 0.00 0.00 37.16 2.77
2040 2233 1.625315 ACATCAACTCACTGCTAGGCA 59.375 47.619 0.00 0.00 36.92 4.75
2046 2239 4.515191 TGTAGGAAAACATCAACTCACTGC 59.485 41.667 0.00 0.00 0.00 4.40
2092 2293 8.273780 ACAGAACCTTTGATCATATGAAAGAC 57.726 34.615 9.99 2.95 0.00 3.01
2136 2337 2.035449 TGTTAAGAGTGTCAGGACCACG 59.965 50.000 0.00 0.00 0.00 4.94
2193 2394 7.048512 AGTGCAGAACTAAACAACTAAGAGTT 58.951 34.615 0.00 0.00 36.65 3.01
2196 2397 7.723324 AGTAGTGCAGAACTAAACAACTAAGA 58.277 34.615 0.00 0.00 43.08 2.10
2201 2402 6.846325 AGAAGTAGTGCAGAACTAAACAAC 57.154 37.500 1.46 0.00 43.08 3.32
2212 2413 6.037830 GGAGTAGAAGACTAGAAGTAGTGCAG 59.962 46.154 0.00 0.00 39.78 4.41
2214 2415 5.297527 GGGAGTAGAAGACTAGAAGTAGTGC 59.702 48.000 0.00 0.00 39.78 4.40
2220 2421 4.862371 ACCAGGGAGTAGAAGACTAGAAG 58.138 47.826 0.00 0.00 39.06 2.85
2221 2422 4.949966 ACCAGGGAGTAGAAGACTAGAA 57.050 45.455 0.00 0.00 39.06 2.10
2222 2423 4.949966 AACCAGGGAGTAGAAGACTAGA 57.050 45.455 0.00 0.00 39.06 2.43
2223 2424 5.017490 TCAAACCAGGGAGTAGAAGACTAG 58.983 45.833 0.00 0.00 39.06 2.57
2224 2425 5.006896 TCAAACCAGGGAGTAGAAGACTA 57.993 43.478 0.00 0.00 39.06 2.59
2225 2426 3.858135 TCAAACCAGGGAGTAGAAGACT 58.142 45.455 0.00 0.00 42.90 3.24
2226 2427 4.618920 TTCAAACCAGGGAGTAGAAGAC 57.381 45.455 0.00 0.00 0.00 3.01
2227 2428 4.844085 TCATTCAAACCAGGGAGTAGAAGA 59.156 41.667 0.00 0.00 0.00 2.87
2372 2573 4.042809 AGTCTGACAATCATAACCACCCAA 59.957 41.667 10.88 0.00 0.00 4.12
2388 2589 6.591834 AGTGTAACAGAATTATGCAGTCTGAC 59.408 38.462 20.21 0.00 41.08 3.51
2451 2656 0.896226 GGAACTGGGCGTAGAGACTT 59.104 55.000 0.00 0.00 0.00 3.01
2460 2665 1.743252 GCAGAAGAGGAACTGGGCG 60.743 63.158 0.00 0.00 41.55 6.13
2462 2667 1.072965 ACAAGCAGAAGAGGAACTGGG 59.927 52.381 0.00 0.00 41.55 4.45
2463 2668 2.557920 ACAAGCAGAAGAGGAACTGG 57.442 50.000 0.00 0.00 41.55 4.00
2472 2677 6.259608 CCCATACTGAGATTAACAAGCAGAAG 59.740 42.308 0.00 0.00 0.00 2.85
2481 2686 7.598759 TCTTAGGTCCCATACTGAGATTAAC 57.401 40.000 0.00 0.00 0.00 2.01
2483 2688 8.651389 CAAATCTTAGGTCCCATACTGAGATTA 58.349 37.037 10.71 0.00 44.36 1.75
2487 2692 6.240549 ACAAATCTTAGGTCCCATACTGAG 57.759 41.667 0.00 0.00 0.00 3.35
2950 3156 1.213537 GTAGTAGTTGGTCGCGGCA 59.786 57.895 14.93 0.00 0.00 5.69
2968 3174 2.490217 CTCAGGGTGTCGTAGGCG 59.510 66.667 0.00 0.00 39.92 5.52
3163 3369 4.039730 TCCTTCTCCATTATGCAGTAGAGC 59.960 45.833 0.00 0.00 0.00 4.09
3199 3405 2.074967 CCCAAGCCCCTTGTACAGA 58.925 57.895 0.00 0.00 39.58 3.41
3326 3532 2.565834 CCTCTTCTTTAAGGACCCGACA 59.434 50.000 0.00 0.00 34.35 4.35
3395 3601 5.129980 TCTGCTGAGTAGTTGATCATCCAAT 59.870 40.000 0.00 0.00 0.00 3.16
3415 3621 2.784347 ACCTTTGACCTAAGCTTCTGC 58.216 47.619 0.00 0.00 40.05 4.26
3460 3666 7.724061 AGAACTAATTTAGAGGCCAAAACTTCA 59.276 33.333 5.01 0.00 0.00 3.02
3491 3698 9.450807 GAATATTGTTTATGGATTTCAACTCGG 57.549 33.333 0.00 0.00 0.00 4.63
3583 3792 6.688073 AGATTAACCAAGATCCGGTGATAT 57.312 37.500 0.00 0.59 36.67 1.63
3651 3860 0.387929 GGATATCGAACTGCCCGTCA 59.612 55.000 0.00 0.00 0.00 4.35
3655 3864 1.048601 TCCAGGATATCGAACTGCCC 58.951 55.000 0.00 0.00 0.00 5.36
3728 3937 1.523758 CCTCCGCCCATATTAGTTGC 58.476 55.000 0.00 0.00 0.00 4.17
3732 3941 1.645710 ACTCCCTCCGCCCATATTAG 58.354 55.000 0.00 0.00 0.00 1.73
3733 3942 3.484953 ATACTCCCTCCGCCCATATTA 57.515 47.619 0.00 0.00 0.00 0.98
3734 3943 2.344093 ATACTCCCTCCGCCCATATT 57.656 50.000 0.00 0.00 0.00 1.28
3735 3944 3.484953 TTATACTCCCTCCGCCCATAT 57.515 47.619 0.00 0.00 0.00 1.78
3736 3945 3.484953 ATTATACTCCCTCCGCCCATA 57.515 47.619 0.00 0.00 0.00 2.74
3737 3946 2.305927 CAATTATACTCCCTCCGCCCAT 59.694 50.000 0.00 0.00 0.00 4.00
3738 3947 1.697432 CAATTATACTCCCTCCGCCCA 59.303 52.381 0.00 0.00 0.00 5.36
3741 3950 4.894784 TCAATCAATTATACTCCCTCCGC 58.105 43.478 0.00 0.00 0.00 5.54
3771 3981 7.939039 AGTCAAAGATTGTGTTTCTGAATCCTA 59.061 33.333 0.00 0.00 0.00 2.94
3818 4029 1.559682 TCCAGCCAGGCCTAAAACTAG 59.440 52.381 3.98 0.00 37.29 2.57
3819 4030 1.663911 TCCAGCCAGGCCTAAAACTA 58.336 50.000 3.98 0.00 37.29 2.24
3885 4096 4.267690 CAGGCGAAAAGGAAAACTGAAAAC 59.732 41.667 0.00 0.00 0.00 2.43
3886 4097 4.158764 TCAGGCGAAAAGGAAAACTGAAAA 59.841 37.500 0.00 0.00 31.30 2.29
3924 4135 3.129109 GGAGTAGTAGTATTTTGCGGGC 58.871 50.000 0.00 0.00 0.00 6.13
3934 4145 9.690913 TTTCAGCAGTATTAAGGAGTAGTAGTA 57.309 33.333 0.00 0.00 0.00 1.82
3935 4146 8.591114 TTTCAGCAGTATTAAGGAGTAGTAGT 57.409 34.615 0.00 0.00 0.00 2.73
3954 4165 2.596904 TCAGGCGGTAGTATTTCAGC 57.403 50.000 0.00 0.00 0.00 4.26
3998 4209 1.322442 GCCAAGGCTTACATCCCATC 58.678 55.000 0.00 0.00 38.26 3.51
4010 4221 1.340017 TGTCTACCATTGAGCCAAGGC 60.340 52.381 2.02 2.02 42.33 4.35
4011 4222 2.749621 GTTGTCTACCATTGAGCCAAGG 59.250 50.000 0.00 0.00 0.00 3.61
4012 4223 3.189287 GTGTTGTCTACCATTGAGCCAAG 59.811 47.826 0.00 0.00 0.00 3.61
4013 4224 3.146066 GTGTTGTCTACCATTGAGCCAA 58.854 45.455 0.00 0.00 0.00 4.52
4014 4225 2.371841 AGTGTTGTCTACCATTGAGCCA 59.628 45.455 0.00 0.00 0.00 4.75
4015 4226 3.059352 AGTGTTGTCTACCATTGAGCC 57.941 47.619 0.00 0.00 0.00 4.70
4016 4227 4.572389 CCATAGTGTTGTCTACCATTGAGC 59.428 45.833 0.00 0.00 0.00 4.26
4017 4228 5.734720 ACCATAGTGTTGTCTACCATTGAG 58.265 41.667 0.00 0.00 0.00 3.02
4018 4229 5.755409 ACCATAGTGTTGTCTACCATTGA 57.245 39.130 0.00 0.00 0.00 2.57
4019 4230 5.937540 TCAACCATAGTGTTGTCTACCATTG 59.062 40.000 4.07 0.00 44.66 2.82
4020 4231 6.121776 TCAACCATAGTGTTGTCTACCATT 57.878 37.500 4.07 0.00 44.66 3.16
4021 4232 5.755409 TCAACCATAGTGTTGTCTACCAT 57.245 39.130 4.07 0.00 44.66 3.55
4022 4233 5.012664 ACATCAACCATAGTGTTGTCTACCA 59.987 40.000 4.07 0.00 44.66 3.25
4023 4234 5.488341 ACATCAACCATAGTGTTGTCTACC 58.512 41.667 4.07 0.00 44.66 3.18
4024 4235 6.398918 AGACATCAACCATAGTGTTGTCTAC 58.601 40.000 13.68 0.00 44.66 2.59
4025 4236 6.351033 GGAGACATCAACCATAGTGTTGTCTA 60.351 42.308 14.77 0.00 44.66 2.59
4026 4237 5.482908 GAGACATCAACCATAGTGTTGTCT 58.517 41.667 14.73 14.73 44.66 3.41
4027 4238 4.631813 GGAGACATCAACCATAGTGTTGTC 59.368 45.833 7.29 7.29 44.66 3.18
4028 4239 4.579869 GGAGACATCAACCATAGTGTTGT 58.420 43.478 4.07 0.00 44.66 3.32
4029 4240 3.618594 CGGAGACATCAACCATAGTGTTG 59.381 47.826 0.00 0.00 45.51 3.33
4030 4241 3.513912 TCGGAGACATCAACCATAGTGTT 59.486 43.478 0.00 0.00 0.00 3.32
4031 4242 3.096852 TCGGAGACATCAACCATAGTGT 58.903 45.455 0.00 0.00 0.00 3.55
4032 4243 3.801114 TCGGAGACATCAACCATAGTG 57.199 47.619 0.00 0.00 0.00 2.74
4046 4257 2.035155 TCGAAGCCTGGTCGGAGA 59.965 61.111 6.84 0.00 39.01 3.71
4047 4258 2.182030 GTCGAAGCCTGGTCGGAG 59.818 66.667 6.84 0.00 39.01 4.63
4048 4259 3.744719 CGTCGAAGCCTGGTCGGA 61.745 66.667 6.84 0.00 39.01 4.55
4049 4260 3.966026 GACGTCGAAGCCTGGTCGG 62.966 68.421 0.00 0.00 39.01 4.79
4050 4261 2.504244 GACGTCGAAGCCTGGTCG 60.504 66.667 0.00 0.60 39.88 4.79
4051 4262 2.126031 GGACGTCGAAGCCTGGTC 60.126 66.667 9.92 0.00 0.00 4.02
4052 4263 3.692406 GGGACGTCGAAGCCTGGT 61.692 66.667 9.92 0.00 0.00 4.00
4053 4264 3.691342 TGGGACGTCGAAGCCTGG 61.691 66.667 9.92 0.00 0.00 4.45
4054 4265 2.432628 GTGGGACGTCGAAGCCTG 60.433 66.667 9.92 0.00 0.00 4.85
4055 4266 2.600769 AGTGGGACGTCGAAGCCT 60.601 61.111 9.92 0.00 0.00 4.58
4056 4267 2.126031 GAGTGGGACGTCGAAGCC 60.126 66.667 9.92 5.51 0.00 4.35
4057 4268 1.153997 GAGAGTGGGACGTCGAAGC 60.154 63.158 9.92 0.00 0.00 3.86
4058 4269 1.134901 CGAGAGTGGGACGTCGAAG 59.865 63.158 9.92 0.00 33.25 3.79
4059 4270 2.330372 CCGAGAGTGGGACGTCGAA 61.330 63.158 9.92 0.00 33.25 3.71
4060 4271 2.745100 CCGAGAGTGGGACGTCGA 60.745 66.667 9.92 0.00 33.25 4.20
4061 4272 2.745100 TCCGAGAGTGGGACGTCG 60.745 66.667 9.92 0.00 31.90 5.12
4062 4273 1.242665 AACTCCGAGAGTGGGACGTC 61.243 60.000 7.13 7.13 42.59 4.34
4063 4274 0.826672 AAACTCCGAGAGTGGGACGT 60.827 55.000 1.33 0.00 42.59 4.34
4064 4275 0.317479 AAAACTCCGAGAGTGGGACG 59.683 55.000 1.33 0.00 42.59 4.79
4065 4276 1.619332 AGAAAACTCCGAGAGTGGGAC 59.381 52.381 1.33 1.81 42.59 4.46
4066 4277 1.893801 GAGAAAACTCCGAGAGTGGGA 59.106 52.381 1.33 0.00 42.59 4.37
4067 4278 1.066787 GGAGAAAACTCCGAGAGTGGG 60.067 57.143 1.33 0.00 42.59 4.61
4068 4279 2.371910 GGAGAAAACTCCGAGAGTGG 57.628 55.000 1.33 0.00 42.59 4.00
4076 4287 5.006844 GCTTCGCTTTATAGGAGAAAACTCC 59.993 44.000 8.06 8.06 43.65 3.85
4077 4288 5.276442 CGCTTCGCTTTATAGGAGAAAACTC 60.276 44.000 0.00 0.00 0.00 3.01
4078 4289 4.567159 CGCTTCGCTTTATAGGAGAAAACT 59.433 41.667 0.00 0.00 0.00 2.66
4079 4290 4.260253 CCGCTTCGCTTTATAGGAGAAAAC 60.260 45.833 0.00 0.00 0.00 2.43
4080 4291 3.869246 CCGCTTCGCTTTATAGGAGAAAA 59.131 43.478 0.00 0.00 0.00 2.29
4081 4292 3.454375 CCGCTTCGCTTTATAGGAGAAA 58.546 45.455 0.00 0.00 0.00 2.52
4082 4293 2.223971 CCCGCTTCGCTTTATAGGAGAA 60.224 50.000 0.00 0.00 0.00 2.87
4083 4294 1.340248 CCCGCTTCGCTTTATAGGAGA 59.660 52.381 0.00 0.00 0.00 3.71
4084 4295 1.605712 CCCCGCTTCGCTTTATAGGAG 60.606 57.143 0.00 0.00 0.00 3.69
4085 4296 0.391597 CCCCGCTTCGCTTTATAGGA 59.608 55.000 0.00 0.00 0.00 2.94
4086 4297 0.602905 CCCCCGCTTCGCTTTATAGG 60.603 60.000 0.00 0.00 0.00 2.57
4087 4298 2.914379 CCCCCGCTTCGCTTTATAG 58.086 57.895 0.00 0.00 0.00 1.31
4102 4313 0.178961 GGGAATTAGATGCCACCCCC 60.179 60.000 0.00 0.00 0.00 5.40
4103 4314 3.439440 GGGAATTAGATGCCACCCC 57.561 57.895 0.00 0.00 0.00 4.95
4104 4315 0.853530 AGGGGAATTAGATGCCACCC 59.146 55.000 0.00 0.00 36.93 4.61
4105 4316 1.202940 GGAGGGGAATTAGATGCCACC 60.203 57.143 0.00 0.00 31.30 4.61
4106 4317 1.202940 GGGAGGGGAATTAGATGCCAC 60.203 57.143 0.00 0.00 31.30 5.01
4107 4318 1.149101 GGGAGGGGAATTAGATGCCA 58.851 55.000 0.00 0.00 31.30 4.92
4108 4319 0.405973 GGGGAGGGGAATTAGATGCC 59.594 60.000 0.00 0.00 0.00 4.40
4109 4320 0.036875 CGGGGAGGGGAATTAGATGC 59.963 60.000 0.00 0.00 0.00 3.91
4110 4321 1.348036 GACGGGGAGGGGAATTAGATG 59.652 57.143 0.00 0.00 0.00 2.90
4111 4322 1.730851 GACGGGGAGGGGAATTAGAT 58.269 55.000 0.00 0.00 0.00 1.98
4112 4323 0.399519 GGACGGGGAGGGGAATTAGA 60.400 60.000 0.00 0.00 0.00 2.10
4113 4324 0.400093 AGGACGGGGAGGGGAATTAG 60.400 60.000 0.00 0.00 0.00 1.73
4114 4325 0.693092 CAGGACGGGGAGGGGAATTA 60.693 60.000 0.00 0.00 0.00 1.40
4115 4326 2.001269 CAGGACGGGGAGGGGAATT 61.001 63.158 0.00 0.00 0.00 2.17
4116 4327 2.366972 CAGGACGGGGAGGGGAAT 60.367 66.667 0.00 0.00 0.00 3.01
4117 4328 2.994912 AAACAGGACGGGGAGGGGAA 62.995 60.000 0.00 0.00 0.00 3.97
4118 4329 3.494080 AAACAGGACGGGGAGGGGA 62.494 63.158 0.00 0.00 0.00 4.81
4119 4330 2.933834 AAACAGGACGGGGAGGGG 60.934 66.667 0.00 0.00 0.00 4.79
4120 4331 1.489560 AAGAAACAGGACGGGGAGGG 61.490 60.000 0.00 0.00 0.00 4.30
4121 4332 1.207329 CTAAGAAACAGGACGGGGAGG 59.793 57.143 0.00 0.00 0.00 4.30
4122 4333 1.900486 ACTAAGAAACAGGACGGGGAG 59.100 52.381 0.00 0.00 0.00 4.30
4123 4334 2.019807 ACTAAGAAACAGGACGGGGA 57.980 50.000 0.00 0.00 0.00 4.81
4124 4335 2.830321 AGTACTAAGAAACAGGACGGGG 59.170 50.000 0.00 0.00 31.68 5.73
4125 4336 4.460382 TGTAGTACTAAGAAACAGGACGGG 59.540 45.833 3.61 0.00 31.68 5.28
4126 4337 5.633830 TGTAGTACTAAGAAACAGGACGG 57.366 43.478 3.61 0.00 31.68 4.79
4135 4346 9.750783 ACTCTTGTATTCCTGTAGTACTAAGAA 57.249 33.333 3.61 8.69 0.00 2.52
4140 4351 9.924010 AATCTACTCTTGTATTCCTGTAGTACT 57.076 33.333 0.00 0.00 32.02 2.73
4143 4354 9.256228 TGAAATCTACTCTTGTATTCCTGTAGT 57.744 33.333 0.00 0.00 32.02 2.73
4146 4357 9.220767 GTTTGAAATCTACTCTTGTATTCCTGT 57.779 33.333 0.00 0.00 0.00 4.00
4147 4358 9.442047 AGTTTGAAATCTACTCTTGTATTCCTG 57.558 33.333 0.00 0.00 0.00 3.86
4154 4365 9.847224 TCCTAAAAGTTTGAAATCTACTCTTGT 57.153 29.630 0.00 0.00 0.00 3.16
4156 4367 9.286170 GGTCCTAAAAGTTTGAAATCTACTCTT 57.714 33.333 0.00 0.00 0.00 2.85
4157 4368 8.437575 TGGTCCTAAAAGTTTGAAATCTACTCT 58.562 33.333 0.00 0.00 0.00 3.24
4158 4369 8.617290 TGGTCCTAAAAGTTTGAAATCTACTC 57.383 34.615 0.00 0.00 0.00 2.59
4159 4370 7.175119 GCTGGTCCTAAAAGTTTGAAATCTACT 59.825 37.037 0.00 0.00 0.00 2.57
4160 4371 7.040686 TGCTGGTCCTAAAAGTTTGAAATCTAC 60.041 37.037 0.00 0.00 0.00 2.59
4161 4372 7.001674 TGCTGGTCCTAAAAGTTTGAAATCTA 58.998 34.615 0.00 0.00 0.00 1.98
4162 4373 5.833131 TGCTGGTCCTAAAAGTTTGAAATCT 59.167 36.000 0.00 0.00 0.00 2.40
4163 4374 6.084326 TGCTGGTCCTAAAAGTTTGAAATC 57.916 37.500 0.00 0.00 0.00 2.17
4164 4375 5.598417 ACTGCTGGTCCTAAAAGTTTGAAAT 59.402 36.000 0.00 0.00 0.00 2.17
4165 4376 4.953579 ACTGCTGGTCCTAAAAGTTTGAAA 59.046 37.500 0.00 0.00 0.00 2.69
4166 4377 4.338118 CACTGCTGGTCCTAAAAGTTTGAA 59.662 41.667 0.00 0.00 0.00 2.69
4167 4378 3.882888 CACTGCTGGTCCTAAAAGTTTGA 59.117 43.478 0.00 0.00 0.00 2.69
4168 4379 3.882888 TCACTGCTGGTCCTAAAAGTTTG 59.117 43.478 0.00 0.00 0.00 2.93
4169 4380 4.164843 TCACTGCTGGTCCTAAAAGTTT 57.835 40.909 0.00 0.00 0.00 2.66
4170 4381 3.857157 TCACTGCTGGTCCTAAAAGTT 57.143 42.857 0.00 0.00 0.00 2.66
4171 4382 3.477530 GTTCACTGCTGGTCCTAAAAGT 58.522 45.455 0.00 0.00 0.00 2.66
4172 4383 2.480419 CGTTCACTGCTGGTCCTAAAAG 59.520 50.000 0.00 0.00 0.00 2.27
4173 4384 2.103432 TCGTTCACTGCTGGTCCTAAAA 59.897 45.455 0.00 0.00 0.00 1.52
4174 4385 1.689813 TCGTTCACTGCTGGTCCTAAA 59.310 47.619 0.00 0.00 0.00 1.85
4175 4386 1.334160 TCGTTCACTGCTGGTCCTAA 58.666 50.000 0.00 0.00 0.00 2.69
4176 4387 1.557099 ATCGTTCACTGCTGGTCCTA 58.443 50.000 0.00 0.00 0.00 2.94
4177 4388 0.687354 AATCGTTCACTGCTGGTCCT 59.313 50.000 0.00 0.00 0.00 3.85
4178 4389 1.523758 AAATCGTTCACTGCTGGTCC 58.476 50.000 0.00 0.00 0.00 4.46
4179 4390 4.742438 TTAAAATCGTTCACTGCTGGTC 57.258 40.909 0.00 0.00 0.00 4.02
4180 4391 4.578928 AGTTTAAAATCGTTCACTGCTGGT 59.421 37.500 0.00 0.00 0.00 4.00
4181 4392 5.108385 AGTTTAAAATCGTTCACTGCTGG 57.892 39.130 0.00 0.00 0.00 4.85
4182 4393 7.449934 AAAAGTTTAAAATCGTTCACTGCTG 57.550 32.000 0.00 0.00 0.00 4.41
4183 4394 7.860872 CCTAAAAGTTTAAAATCGTTCACTGCT 59.139 33.333 0.00 0.00 0.00 4.24
4184 4395 7.358105 GCCTAAAAGTTTAAAATCGTTCACTGC 60.358 37.037 0.00 0.00 0.00 4.40
4185 4396 7.114388 GGCCTAAAAGTTTAAAATCGTTCACTG 59.886 37.037 0.00 0.00 0.00 3.66
4186 4397 7.013942 AGGCCTAAAAGTTTAAAATCGTTCACT 59.986 33.333 1.29 0.00 0.00 3.41
4187 4398 7.143340 AGGCCTAAAAGTTTAAAATCGTTCAC 58.857 34.615 1.29 0.00 0.00 3.18
4188 4399 7.279750 AGGCCTAAAAGTTTAAAATCGTTCA 57.720 32.000 1.29 0.00 0.00 3.18
4189 4400 6.805271 GGAGGCCTAAAAGTTTAAAATCGTTC 59.195 38.462 4.42 0.00 0.00 3.95
4190 4401 6.492429 AGGAGGCCTAAAAGTTTAAAATCGTT 59.508 34.615 4.42 0.00 28.47 3.85
4191 4402 6.008331 AGGAGGCCTAAAAGTTTAAAATCGT 58.992 36.000 4.42 0.00 28.47 3.73
4192 4403 6.510879 AGGAGGCCTAAAAGTTTAAAATCG 57.489 37.500 4.42 0.00 28.47 3.34
4193 4404 7.602644 CCAAAGGAGGCCTAAAAGTTTAAAATC 59.397 37.037 4.42 0.00 31.13 2.17
4194 4405 7.071950 ACCAAAGGAGGCCTAAAAGTTTAAAAT 59.928 33.333 4.42 0.00 31.13 1.82
4195 4406 6.384595 ACCAAAGGAGGCCTAAAAGTTTAAAA 59.615 34.615 4.42 0.00 31.13 1.52
4196 4407 5.900699 ACCAAAGGAGGCCTAAAAGTTTAAA 59.099 36.000 4.42 0.00 31.13 1.52
4197 4408 5.460416 ACCAAAGGAGGCCTAAAAGTTTAA 58.540 37.500 4.42 0.00 31.13 1.52
4198 4409 5.069518 ACCAAAGGAGGCCTAAAAGTTTA 57.930 39.130 4.42 0.00 31.13 2.01
4199 4410 3.923648 ACCAAAGGAGGCCTAAAAGTTT 58.076 40.909 4.42 0.00 31.13 2.66
4200 4411 3.612795 ACCAAAGGAGGCCTAAAAGTT 57.387 42.857 4.42 0.00 31.13 2.66
4201 4412 3.612795 AACCAAAGGAGGCCTAAAAGT 57.387 42.857 4.42 0.00 31.13 2.66
4202 4413 3.641436 ACAAACCAAAGGAGGCCTAAAAG 59.359 43.478 4.42 0.00 31.13 2.27
4203 4414 3.648739 ACAAACCAAAGGAGGCCTAAAA 58.351 40.909 4.42 0.00 31.13 1.52
4204 4415 3.322191 ACAAACCAAAGGAGGCCTAAA 57.678 42.857 4.42 0.00 31.13 1.85
4205 4416 3.245122 CCTACAAACCAAAGGAGGCCTAA 60.245 47.826 4.42 0.00 31.13 2.69
4206 4417 2.307686 CCTACAAACCAAAGGAGGCCTA 59.692 50.000 4.42 0.00 31.13 3.93
4207 4418 1.075536 CCTACAAACCAAAGGAGGCCT 59.924 52.381 3.86 3.86 33.87 5.19
4208 4419 1.074889 TCCTACAAACCAAAGGAGGCC 59.925 52.381 0.00 0.00 34.46 5.19
4209 4420 2.579410 TCCTACAAACCAAAGGAGGC 57.421 50.000 0.00 0.00 34.46 4.70
4210 4421 6.419484 AAAAATCCTACAAACCAAAGGAGG 57.581 37.500 0.00 0.00 42.53 4.30
4212 4423 9.250246 CCTATAAAAATCCTACAAACCAAAGGA 57.750 33.333 0.00 0.00 43.38 3.36
4213 4424 8.474831 CCCTATAAAAATCCTACAAACCAAAGG 58.525 37.037 0.00 0.00 0.00 3.11
4214 4425 9.250246 TCCCTATAAAAATCCTACAAACCAAAG 57.750 33.333 0.00 0.00 0.00 2.77
4215 4426 9.777008 ATCCCTATAAAAATCCTACAAACCAAA 57.223 29.630 0.00 0.00 0.00 3.28
4216 4427 9.777008 AATCCCTATAAAAATCCTACAAACCAA 57.223 29.630 0.00 0.00 0.00 3.67
4217 4428 9.416284 GAATCCCTATAAAAATCCTACAAACCA 57.584 33.333 0.00 0.00 0.00 3.67
4218 4429 9.642343 AGAATCCCTATAAAAATCCTACAAACC 57.358 33.333 0.00 0.00 0.00 3.27
4236 4447 9.411848 ACAAAAATCCTATCCTATAGAATCCCT 57.588 33.333 0.00 0.00 0.00 4.20
4257 4468 9.705290 GGCTCTAAAGGAATTTTTCATACAAAA 57.295 29.630 0.00 0.00 0.00 2.44
4258 4469 8.311109 GGGCTCTAAAGGAATTTTTCATACAAA 58.689 33.333 0.00 0.00 0.00 2.83
4259 4470 7.673926 AGGGCTCTAAAGGAATTTTTCATACAA 59.326 33.333 0.00 0.00 0.00 2.41
4260 4471 7.182060 AGGGCTCTAAAGGAATTTTTCATACA 58.818 34.615 0.00 0.00 0.00 2.29
4261 4472 7.646548 AGGGCTCTAAAGGAATTTTTCATAC 57.353 36.000 0.00 0.00 0.00 2.39
4262 4473 8.531146 CAAAGGGCTCTAAAGGAATTTTTCATA 58.469 33.333 0.00 0.00 0.00 2.15
4263 4474 7.389232 CAAAGGGCTCTAAAGGAATTTTTCAT 58.611 34.615 0.00 0.00 0.00 2.57
4264 4475 6.239572 CCAAAGGGCTCTAAAGGAATTTTTCA 60.240 38.462 0.00 0.00 0.00 2.69
4265 4476 6.166279 CCAAAGGGCTCTAAAGGAATTTTTC 58.834 40.000 0.00 0.00 0.00 2.29
4266 4477 5.606749 ACCAAAGGGCTCTAAAGGAATTTTT 59.393 36.000 5.94 0.00 37.90 1.94
4267 4478 5.155161 ACCAAAGGGCTCTAAAGGAATTTT 58.845 37.500 5.94 0.00 37.90 1.82
4268 4479 4.752063 ACCAAAGGGCTCTAAAGGAATTT 58.248 39.130 5.94 0.00 37.90 1.82
4269 4480 4.404185 ACCAAAGGGCTCTAAAGGAATT 57.596 40.909 5.94 0.00 37.90 2.17
4270 4481 4.404185 AACCAAAGGGCTCTAAAGGAAT 57.596 40.909 5.94 0.00 37.90 3.01
4271 4482 3.895041 CAAACCAAAGGGCTCTAAAGGAA 59.105 43.478 5.94 0.00 37.90 3.36
4272 4483 3.117284 ACAAACCAAAGGGCTCTAAAGGA 60.117 43.478 5.94 0.00 37.90 3.36
4273 4484 3.230976 ACAAACCAAAGGGCTCTAAAGG 58.769 45.455 0.00 0.00 37.90 3.11
4274 4485 4.825085 TGTACAAACCAAAGGGCTCTAAAG 59.175 41.667 0.00 0.00 37.90 1.85
4275 4486 4.581409 GTGTACAAACCAAAGGGCTCTAAA 59.419 41.667 0.00 0.00 37.90 1.85
4276 4487 4.139038 GTGTACAAACCAAAGGGCTCTAA 58.861 43.478 0.00 0.00 37.90 2.10
4277 4488 3.136809 TGTGTACAAACCAAAGGGCTCTA 59.863 43.478 0.00 0.00 37.90 2.43
4278 4489 2.092103 TGTGTACAAACCAAAGGGCTCT 60.092 45.455 0.00 0.00 37.90 4.09
4279 4490 2.034179 GTGTGTACAAACCAAAGGGCTC 59.966 50.000 4.69 0.00 37.90 4.70
4280 4491 2.028876 GTGTGTACAAACCAAAGGGCT 58.971 47.619 4.69 0.00 37.90 5.19
4281 4492 1.751924 TGTGTGTACAAACCAAAGGGC 59.248 47.619 13.71 0.00 33.24 5.19
4282 4493 2.755655 TGTGTGTGTACAAACCAAAGGG 59.244 45.455 13.71 0.00 38.82 3.95
4283 4494 4.142271 ACATGTGTGTGTACAAACCAAAGG 60.142 41.667 13.71 3.71 38.82 3.11
4284 4495 4.992688 ACATGTGTGTGTACAAACCAAAG 58.007 39.130 13.71 10.09 38.82 2.77
4285 4496 5.392767 AACATGTGTGTGTACAAACCAAA 57.607 34.783 13.71 0.00 38.92 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.