Multiple sequence alignment - TraesCS7B01G400800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G400800 chr7B 100.000 5078 0 0 1 5078 667306244 667311321 0.000000e+00 9378
1 TraesCS7B01G400800 chr7B 80.052 381 40 19 4713 5078 667320247 667320606 3.040000e-62 250
2 TraesCS7B01G400800 chr7B 88.776 196 17 4 4348 4538 667319760 667319955 8.500000e-58 235
3 TraesCS7B01G400800 chr7A 90.428 2685 172 51 1959 4599 686235723 686233080 0.000000e+00 3456
4 TraesCS7B01G400800 chr7A 87.978 1098 66 25 735 1792 686237175 686236104 0.000000e+00 1236
5 TraesCS7B01G400800 chr7A 82.664 548 56 16 168 707 686237824 686237308 2.790000e-122 449
6 TraesCS7B01G400800 chr7A 86.692 263 29 5 4816 5078 686230611 686230355 2.310000e-73 287
7 TraesCS7B01G400800 chr7D 94.892 1801 84 7 2413 4213 593669075 593667283 0.000000e+00 2809
8 TraesCS7B01G400800 chr7D 87.996 1008 57 27 708 1670 593670622 593669634 0.000000e+00 1133
9 TraesCS7B01G400800 chr7D 82.081 346 28 14 166 507 593673636 593673321 1.080000e-66 265
10 TraesCS7B01G400800 chr7D 88.421 190 19 2 4816 5005 593666902 593666716 5.120000e-55 226
11 TraesCS7B01G400800 chr7D 96.324 136 5 0 4379 4514 593667074 593666939 1.840000e-54 224
12 TraesCS7B01G400800 chr4B 88.218 348 33 4 1045 1385 635619366 635619020 4.730000e-110 409
13 TraesCS7B01G400800 chr4B 96.178 157 6 0 1429 1585 635619021 635618865 1.810000e-64 257
14 TraesCS7B01G400800 chr6B 87.535 353 35 6 1045 1390 45533050 45533400 2.850000e-107 399
15 TraesCS7B01G400800 chr6B 93.299 194 13 0 1386 1579 45538476 45538669 2.310000e-73 287
16 TraesCS7B01G400800 chr2B 83.069 378 60 4 1207 1582 732609600 732609225 1.750000e-89 340
17 TraesCS7B01G400800 chr2A 80.319 188 36 1 1287 1474 19694772 19694958 1.910000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G400800 chr7B 667306244 667311321 5077 False 9378.0 9378 100.0000 1 5078 1 chr7B.!!$F1 5077
1 TraesCS7B01G400800 chr7B 667319760 667320606 846 False 242.5 250 84.4140 4348 5078 2 chr7B.!!$F2 730
2 TraesCS7B01G400800 chr7A 686230355 686237824 7469 True 1357.0 3456 86.9405 168 5078 4 chr7A.!!$R1 4910
3 TraesCS7B01G400800 chr7D 593666716 593673636 6920 True 931.4 2809 89.9428 166 5005 5 chr7D.!!$R1 4839
4 TraesCS7B01G400800 chr4B 635618865 635619366 501 True 333.0 409 92.1980 1045 1585 2 chr4B.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.174617 ACGTGGTGCCTTTTGTTTGG 59.825 50.0 0.00 0.0 0.00 3.28 F
116 117 0.174617 CGTGGTGCCTTTTGTTTGGT 59.825 50.0 0.00 0.0 0.00 3.67 F
194 195 0.393267 GTTGTTAGCACCCGGCCATA 60.393 55.0 2.24 0.0 46.50 2.74 F
1912 4790 0.256752 GGTACCTACGGGGGCAATTT 59.743 55.0 4.06 0.0 40.03 1.82 F
3660 6583 0.033504 GAGGGCTCCGCATAATCGAA 59.966 55.0 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1593 4142 0.533032 GGTGAGAAGAGAACGAGGGG 59.467 60.000 0.00 0.00 0.00 4.79 R
1912 4790 1.001268 GTAGGATTCTGCGATCGAGCA 60.001 52.381 21.57 7.25 45.96 4.26 R
2103 5008 1.059264 GAGCGACAGTGTGCGATTAAC 59.941 52.381 16.04 2.07 35.87 2.01 R
3783 6706 0.451783 GCGTGCCATCCTTAACCTTG 59.548 55.000 0.00 0.00 0.00 3.61 R
4898 10300 0.178955 TTACCCCTCGTCCACTCACA 60.179 55.000 0.00 0.00 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.000429 CATTAAGCCTTGCAGGTTGC 58.000 50.000 1.00 0.00 45.29 4.17
31 32 4.579127 GGTTGCAACCTGAGGTGT 57.421 55.556 36.26 0.00 45.75 4.16
32 33 2.331265 GGTTGCAACCTGAGGTGTC 58.669 57.895 36.26 10.81 45.75 3.67
33 34 0.179018 GGTTGCAACCTGAGGTGTCT 60.179 55.000 36.26 0.00 45.75 3.41
34 35 0.947244 GTTGCAACCTGAGGTGTCTG 59.053 55.000 19.15 0.16 35.34 3.51
35 36 0.179020 TTGCAACCTGAGGTGTCTGG 60.179 55.000 4.15 0.00 45.30 3.86
42 43 3.981071 CCTGAGGTGTCTGGTATTGAA 57.019 47.619 0.00 0.00 37.10 2.69
43 44 4.286297 CCTGAGGTGTCTGGTATTGAAA 57.714 45.455 0.00 0.00 37.10 2.69
44 45 4.651778 CCTGAGGTGTCTGGTATTGAAAA 58.348 43.478 0.00 0.00 37.10 2.29
45 46 4.697352 CCTGAGGTGTCTGGTATTGAAAAG 59.303 45.833 0.00 0.00 37.10 2.27
46 47 5.513094 CCTGAGGTGTCTGGTATTGAAAAGA 60.513 44.000 0.00 0.00 37.10 2.52
47 48 6.126863 TGAGGTGTCTGGTATTGAAAAGAT 57.873 37.500 0.00 0.00 0.00 2.40
48 49 6.173339 TGAGGTGTCTGGTATTGAAAAGATC 58.827 40.000 0.00 0.00 0.00 2.75
49 50 6.013379 TGAGGTGTCTGGTATTGAAAAGATCT 60.013 38.462 0.00 0.00 0.00 2.75
50 51 6.176183 AGGTGTCTGGTATTGAAAAGATCTG 58.824 40.000 0.00 0.00 0.00 2.90
51 52 6.013379 AGGTGTCTGGTATTGAAAAGATCTGA 60.013 38.462 0.00 0.00 0.00 3.27
52 53 6.655003 GGTGTCTGGTATTGAAAAGATCTGAA 59.345 38.462 0.00 0.00 0.00 3.02
53 54 7.174946 GGTGTCTGGTATTGAAAAGATCTGAAA 59.825 37.037 0.00 0.00 0.00 2.69
54 55 8.567948 GTGTCTGGTATTGAAAAGATCTGAAAA 58.432 33.333 0.00 0.00 0.00 2.29
55 56 9.130661 TGTCTGGTATTGAAAAGATCTGAAAAA 57.869 29.630 0.00 0.00 0.00 1.94
102 103 5.862924 CAAGAATTGTCAATCTACGTGGT 57.137 39.130 0.00 0.00 42.34 4.16
103 104 5.621422 CAAGAATTGTCAATCTACGTGGTG 58.379 41.667 0.00 0.00 42.34 4.17
104 105 3.684788 AGAATTGTCAATCTACGTGGTGC 59.315 43.478 0.00 0.00 0.00 5.01
105 106 1.803334 TTGTCAATCTACGTGGTGCC 58.197 50.000 0.00 0.00 0.00 5.01
106 107 0.973632 TGTCAATCTACGTGGTGCCT 59.026 50.000 0.00 0.00 0.00 4.75
107 108 1.346395 TGTCAATCTACGTGGTGCCTT 59.654 47.619 0.00 0.00 0.00 4.35
108 109 2.224426 TGTCAATCTACGTGGTGCCTTT 60.224 45.455 0.00 0.00 0.00 3.11
109 110 2.812011 GTCAATCTACGTGGTGCCTTTT 59.188 45.455 0.00 0.00 0.00 2.27
110 111 2.811431 TCAATCTACGTGGTGCCTTTTG 59.189 45.455 0.00 0.00 0.00 2.44
111 112 2.552315 CAATCTACGTGGTGCCTTTTGT 59.448 45.455 0.00 0.00 0.00 2.83
112 113 2.335316 TCTACGTGGTGCCTTTTGTT 57.665 45.000 0.00 0.00 0.00 2.83
113 114 2.645802 TCTACGTGGTGCCTTTTGTTT 58.354 42.857 0.00 0.00 0.00 2.83
114 115 2.356382 TCTACGTGGTGCCTTTTGTTTG 59.644 45.455 0.00 0.00 0.00 2.93
115 116 0.174617 ACGTGGTGCCTTTTGTTTGG 59.825 50.000 0.00 0.00 0.00 3.28
116 117 0.174617 CGTGGTGCCTTTTGTTTGGT 59.825 50.000 0.00 0.00 0.00 3.67
117 118 1.404851 CGTGGTGCCTTTTGTTTGGTT 60.405 47.619 0.00 0.00 0.00 3.67
118 119 2.006169 GTGGTGCCTTTTGTTTGGTTG 58.994 47.619 0.00 0.00 0.00 3.77
119 120 1.902508 TGGTGCCTTTTGTTTGGTTGA 59.097 42.857 0.00 0.00 0.00 3.18
120 121 2.303022 TGGTGCCTTTTGTTTGGTTGAA 59.697 40.909 0.00 0.00 0.00 2.69
121 122 3.244561 TGGTGCCTTTTGTTTGGTTGAAA 60.245 39.130 0.00 0.00 0.00 2.69
122 123 3.944650 GGTGCCTTTTGTTTGGTTGAAAT 59.055 39.130 0.00 0.00 0.00 2.17
123 124 4.035091 GGTGCCTTTTGTTTGGTTGAAATC 59.965 41.667 0.00 0.00 0.00 2.17
124 125 4.035091 GTGCCTTTTGTTTGGTTGAAATCC 59.965 41.667 0.00 0.00 0.00 3.01
125 126 3.563808 GCCTTTTGTTTGGTTGAAATCCC 59.436 43.478 0.00 0.00 0.00 3.85
126 127 4.775236 CCTTTTGTTTGGTTGAAATCCCA 58.225 39.130 0.00 0.00 0.00 4.37
127 128 4.815846 CCTTTTGTTTGGTTGAAATCCCAG 59.184 41.667 0.00 0.00 31.04 4.45
128 129 3.467374 TTGTTTGGTTGAAATCCCAGC 57.533 42.857 0.00 0.00 31.04 4.85
129 130 1.691434 TGTTTGGTTGAAATCCCAGCC 59.309 47.619 0.00 0.00 37.85 4.85
130 131 1.691434 GTTTGGTTGAAATCCCAGCCA 59.309 47.619 0.00 0.00 44.06 4.75
131 132 2.302733 GTTTGGTTGAAATCCCAGCCAT 59.697 45.455 0.00 0.00 44.87 4.40
132 133 3.464720 TTGGTTGAAATCCCAGCCATA 57.535 42.857 0.00 0.00 44.87 2.74
133 134 3.686227 TGGTTGAAATCCCAGCCATAT 57.314 42.857 0.00 0.00 41.52 1.78
134 135 3.565307 TGGTTGAAATCCCAGCCATATC 58.435 45.455 0.00 0.00 41.52 1.63
135 136 3.205056 TGGTTGAAATCCCAGCCATATCT 59.795 43.478 0.00 0.00 41.52 1.98
136 137 4.415179 TGGTTGAAATCCCAGCCATATCTA 59.585 41.667 0.00 0.00 41.52 1.98
137 138 5.074929 TGGTTGAAATCCCAGCCATATCTAT 59.925 40.000 0.00 0.00 41.52 1.98
138 139 5.416952 GGTTGAAATCCCAGCCATATCTATG 59.583 44.000 0.00 0.00 37.37 2.23
182 183 5.522460 CGGGTAACTATGGACATGTTGTTAG 59.478 44.000 0.00 4.22 0.00 2.34
194 195 0.393267 GTTGTTAGCACCCGGCCATA 60.393 55.000 2.24 0.00 46.50 2.74
200 201 2.113139 CACCCGGCCATACCCATC 59.887 66.667 2.24 0.00 33.26 3.51
217 219 2.301583 CCATCCCACCCATTTCGTTTTT 59.698 45.455 0.00 0.00 0.00 1.94
221 223 3.321396 TCCCACCCATTTCGTTTTTAACC 59.679 43.478 0.00 0.00 0.00 2.85
222 224 3.322541 CCCACCCATTTCGTTTTTAACCT 59.677 43.478 0.00 0.00 0.00 3.50
223 225 4.523558 CCCACCCATTTCGTTTTTAACCTA 59.476 41.667 0.00 0.00 0.00 3.08
224 226 5.186215 CCCACCCATTTCGTTTTTAACCTAT 59.814 40.000 0.00 0.00 0.00 2.57
225 227 6.096695 CCACCCATTTCGTTTTTAACCTATG 58.903 40.000 0.00 0.00 0.00 2.23
271 273 7.229306 CCATACCATATATAATGGCGCTTTGAT 59.771 37.037 7.64 0.00 42.82 2.57
279 281 2.464459 GGCGCTTTGATGGTCGAGG 61.464 63.158 7.64 0.00 0.00 4.63
288 290 1.825474 TGATGGTCGAGGGAGAAGTTC 59.175 52.381 0.00 0.00 0.00 3.01
325 327 4.696402 ACCTTTTCAGTACAACGTTGTTGA 59.304 37.500 36.26 29.89 42.35 3.18
331 333 4.509970 TCAGTACAACGTTGTTGAGAATGG 59.490 41.667 36.26 17.79 42.35 3.16
397 402 1.597663 GGCCTATTTGACGGTTCATCG 59.402 52.381 0.00 0.00 0.00 3.84
415 420 6.266168 TCATCGAAATGGTGCAATAAACTT 57.734 33.333 0.00 0.00 33.42 2.66
416 421 6.686630 TCATCGAAATGGTGCAATAAACTTT 58.313 32.000 0.00 0.00 33.42 2.66
418 423 5.226396 TCGAAATGGTGCAATAAACTTTGG 58.774 37.500 0.00 0.00 0.00 3.28
420 425 5.868801 CGAAATGGTGCAATAAACTTTGGAT 59.131 36.000 0.00 0.00 29.37 3.41
452 457 8.780846 ATTTACATTTATCTGTTGTACCACGA 57.219 30.769 0.00 0.00 0.00 4.35
544 560 9.844257 AAAAAGAAGAAGAAGAAGAAGAGATGA 57.156 29.630 0.00 0.00 0.00 2.92
546 562 9.439500 AAAGAAGAAGAAGAAGAAGAGATGATG 57.561 33.333 0.00 0.00 0.00 3.07
547 563 8.365060 AGAAGAAGAAGAAGAAGAGATGATGA 57.635 34.615 0.00 0.00 0.00 2.92
549 565 8.951787 AAGAAGAAGAAGAAGAGATGATGATG 57.048 34.615 0.00 0.00 0.00 3.07
550 566 8.308851 AGAAGAAGAAGAAGAGATGATGATGA 57.691 34.615 0.00 0.00 0.00 2.92
553 569 8.308851 AGAAGAAGAAGAGATGATGATGAAGA 57.691 34.615 0.00 0.00 0.00 2.87
565 1901 6.426980 TGATGATGAAGAAGACAAAATCGG 57.573 37.500 0.00 0.00 0.00 4.18
577 1913 5.883661 AGACAAAATCGGCATTGATAGTTG 58.116 37.500 0.00 0.00 33.21 3.16
609 1945 1.613437 CCGAATTCACAGCCCAGTTTT 59.387 47.619 6.22 0.00 0.00 2.43
623 1959 4.219725 GCCCAGTTTTAATTGAACTAGCCA 59.780 41.667 8.24 0.00 35.68 4.75
626 1962 6.657541 CCCAGTTTTAATTGAACTAGCCAGTA 59.342 38.462 8.24 0.00 35.68 2.74
685 2022 6.282930 AGAGTTGTGTTTGGAATTTGGATTG 58.717 36.000 0.00 0.00 0.00 2.67
686 2023 6.098124 AGAGTTGTGTTTGGAATTTGGATTGA 59.902 34.615 0.00 0.00 0.00 2.57
703 2041 6.612741 TGGATTGAATTCCCATGACATGATA 58.387 36.000 17.24 1.37 34.67 2.15
768 3283 5.653255 ATTTCTCCATGGCCTAGTACAAT 57.347 39.130 6.96 0.00 0.00 2.71
792 3308 0.776810 TGGGAATTTGGAGGAGTGCA 59.223 50.000 0.00 0.00 0.00 4.57
818 3334 3.661648 GGGGCCTCCAGCTTTCCA 61.662 66.667 0.84 0.00 43.05 3.53
852 3376 1.931551 CGGACGACACCAAACAGTG 59.068 57.895 0.00 0.00 43.65 3.66
853 3377 1.647084 GGACGACACCAAACAGTGC 59.353 57.895 0.00 0.00 41.67 4.40
862 3386 1.806542 ACCAAACAGTGCGCAGATAAG 59.193 47.619 12.22 1.02 0.00 1.73
863 3387 1.466360 CCAAACAGTGCGCAGATAAGC 60.466 52.381 12.22 0.00 0.00 3.09
885 3409 2.097038 CGAGGGAGCAAAGCTGTCG 61.097 63.158 0.00 0.00 39.88 4.35
979 3503 2.749044 CAATCAGCCACGCAGCCT 60.749 61.111 0.00 0.00 0.00 4.58
984 3508 3.314331 AGCCACGCAGCCTACACT 61.314 61.111 0.00 0.00 0.00 3.55
1165 3708 2.104132 CGTCATCGGATGCCACGA 59.896 61.111 21.03 0.05 45.19 4.35
1166 3709 1.946156 CGTCATCGGATGCCACGAG 60.946 63.158 21.03 3.96 44.24 4.18
1167 3710 1.592669 GTCATCGGATGCCACGAGG 60.593 63.158 13.15 0.00 44.24 4.63
1308 3857 2.829003 CTGACGGCGGAGGAGCTA 60.829 66.667 13.24 0.00 37.29 3.32
1608 4165 3.007973 GCGCCCCTCGTTCTCTTCT 62.008 63.158 0.00 0.00 41.07 2.85
1612 4169 0.533032 CCCCTCGTTCTCTTCTCACC 59.467 60.000 0.00 0.00 0.00 4.02
1613 4170 1.257743 CCCTCGTTCTCTTCTCACCA 58.742 55.000 0.00 0.00 0.00 4.17
1661 4239 2.028631 GATACCTACGGCCACGGC 59.971 66.667 2.24 0.00 46.48 5.68
1697 4275 4.495422 ACCGAAGTATCATGTGTTCTGAC 58.505 43.478 0.00 0.00 0.00 3.51
1698 4276 3.547868 CCGAAGTATCATGTGTTCTGACG 59.452 47.826 0.00 0.00 0.00 4.35
1699 4277 4.412207 CGAAGTATCATGTGTTCTGACGA 58.588 43.478 0.00 0.00 0.00 4.20
1700 4278 4.263209 CGAAGTATCATGTGTTCTGACGAC 59.737 45.833 0.00 0.00 0.00 4.34
1701 4279 5.392767 AAGTATCATGTGTTCTGACGACT 57.607 39.130 0.00 0.00 0.00 4.18
1702 4280 4.987832 AGTATCATGTGTTCTGACGACTC 58.012 43.478 0.00 0.00 0.00 3.36
1703 4281 3.942130 ATCATGTGTTCTGACGACTCA 57.058 42.857 0.00 0.00 0.00 3.41
1704 4282 3.013276 TCATGTGTTCTGACGACTCAC 57.987 47.619 0.00 0.00 0.00 3.51
1705 4283 2.360801 TCATGTGTTCTGACGACTCACA 59.639 45.455 0.00 0.00 38.05 3.58
1706 4284 2.203800 TGTGTTCTGACGACTCACAC 57.796 50.000 0.00 0.00 32.85 3.82
1771 4350 8.298030 TGTATCACATCTGCATTTTAGTATCG 57.702 34.615 0.00 0.00 0.00 2.92
1776 4355 7.171508 TCACATCTGCATTTTAGTATCGGATTC 59.828 37.037 0.00 0.00 0.00 2.52
1792 4371 9.736023 GTATCGGATTCTAAAATTTCAGCATTT 57.264 29.630 0.00 0.00 0.00 2.32
1793 4372 8.638685 ATCGGATTCTAAAATTTCAGCATTTG 57.361 30.769 0.00 0.00 0.00 2.32
1794 4373 7.825681 TCGGATTCTAAAATTTCAGCATTTGA 58.174 30.769 0.00 0.00 0.00 2.69
1795 4374 7.970061 TCGGATTCTAAAATTTCAGCATTTGAG 59.030 33.333 0.00 0.00 37.07 3.02
1839 4431 8.484214 ACAGAGATCTATTAAGCAACCATCTA 57.516 34.615 0.00 0.00 0.00 1.98
1840 4432 9.099071 ACAGAGATCTATTAAGCAACCATCTAT 57.901 33.333 0.00 0.00 0.00 1.98
1852 4721 4.260948 GCAACCATCTATTAAGCAGTCTGC 60.261 45.833 17.48 17.48 45.46 4.26
1912 4790 0.256752 GGTACCTACGGGGGCAATTT 59.743 55.000 4.06 0.00 40.03 1.82
1924 4802 0.590732 GGCAATTTGCTCGATCGCAG 60.591 55.000 20.06 10.03 44.28 5.18
1932 4810 1.001268 TGCTCGATCGCAGAATCCTAC 60.001 52.381 11.09 0.00 43.58 3.18
1936 4814 2.095718 TCGATCGCAGAATCCTACGATG 60.096 50.000 11.09 0.24 45.88 3.84
1938 4816 3.120304 CGATCGCAGAATCCTACGATGTA 60.120 47.826 0.26 0.00 45.88 2.29
1940 4818 4.848562 TCGCAGAATCCTACGATGTATT 57.151 40.909 0.00 0.00 33.60 1.89
1942 4820 5.597806 TCGCAGAATCCTACGATGTATTTT 58.402 37.500 0.00 0.00 33.60 1.82
1943 4821 5.462068 TCGCAGAATCCTACGATGTATTTTG 59.538 40.000 0.00 0.00 33.60 2.44
1944 4822 5.462068 CGCAGAATCCTACGATGTATTTTGA 59.538 40.000 0.00 0.00 30.94 2.69
1946 4824 6.292919 GCAGAATCCTACGATGTATTTTGACC 60.293 42.308 0.00 0.00 0.00 4.02
1950 4853 6.918892 TCCTACGATGTATTTTGACCAATG 57.081 37.500 0.00 0.00 0.00 2.82
1959 4862 9.722056 GATGTATTTTGACCAATGTACTTCATC 57.278 33.333 0.00 0.00 35.48 2.92
1965 4868 4.455533 TGACCAATGTACTTCATCTGCAAC 59.544 41.667 0.00 0.00 35.48 4.17
1972 4875 8.383619 CAATGTACTTCATCTGCAACTTAGTAC 58.616 37.037 14.19 14.19 37.85 2.73
1973 4876 7.228314 TGTACTTCATCTGCAACTTAGTACT 57.772 36.000 18.52 0.00 38.07 2.73
1974 4877 8.344446 TGTACTTCATCTGCAACTTAGTACTA 57.656 34.615 18.52 0.00 38.07 1.82
1983 4886 7.837863 TCTGCAACTTAGTACTAGCTGTTAAT 58.162 34.615 11.74 0.00 0.00 1.40
1996 4899 8.626093 ACTAGCTGTTAATACTTTTAGTACGC 57.374 34.615 0.00 0.00 32.84 4.42
2024 4929 6.954944 TGTGTTCTCTTCCAGTTAATTTTCG 58.045 36.000 0.00 0.00 0.00 3.46
2054 4959 6.667848 TGAATCCACTAGAACAGTTATCTCCA 59.332 38.462 0.00 0.00 34.26 3.86
2075 4980 9.921637 TCTCCATTTTACATTTTACCAACATTC 57.078 29.630 0.00 0.00 0.00 2.67
2111 5016 6.707599 GTGATCCACCTAATAGTTAATCGC 57.292 41.667 0.00 0.00 0.00 4.58
2119 5024 6.019801 CACCTAATAGTTAATCGCACACTGTC 60.020 42.308 0.00 0.00 0.00 3.51
2124 5029 0.796870 TAATCGCACACTGTCGCTCG 60.797 55.000 0.00 0.00 0.00 5.03
2136 5047 3.321111 ACTGTCGCTCGGTGGATTATATT 59.679 43.478 0.00 0.00 33.92 1.28
2138 5049 5.185249 ACTGTCGCTCGGTGGATTATATTAT 59.815 40.000 0.00 0.00 33.92 1.28
2163 5074 8.684973 TTATTACTGTAGCTTCGTTCTCTTTC 57.315 34.615 0.00 0.00 0.00 2.62
2164 5075 4.857509 ACTGTAGCTTCGTTCTCTTTCT 57.142 40.909 0.00 0.00 0.00 2.52
2165 5076 4.800784 ACTGTAGCTTCGTTCTCTTTCTC 58.199 43.478 0.00 0.00 0.00 2.87
2166 5077 4.521256 ACTGTAGCTTCGTTCTCTTTCTCT 59.479 41.667 0.00 0.00 0.00 3.10
2170 5081 7.431249 TGTAGCTTCGTTCTCTTTCTCTTTTA 58.569 34.615 0.00 0.00 0.00 1.52
2180 5094 9.600646 GTTCTCTTTCTCTTTTATTGTTGCTAC 57.399 33.333 0.00 0.00 0.00 3.58
2181 5095 9.561069 TTCTCTTTCTCTTTTATTGTTGCTACT 57.439 29.630 0.00 0.00 0.00 2.57
2215 5129 8.557029 AGTAAACTGAAACTTTACACTATGTGC 58.443 33.333 0.00 0.00 36.80 4.57
2216 5130 6.935741 AACTGAAACTTTACACTATGTGCA 57.064 33.333 0.00 0.00 36.98 4.57
2217 5131 7.510549 AACTGAAACTTTACACTATGTGCAT 57.489 32.000 0.00 0.00 36.98 3.96
2218 5132 7.133891 ACTGAAACTTTACACTATGTGCATC 57.866 36.000 0.00 0.00 36.98 3.91
2219 5133 6.710295 ACTGAAACTTTACACTATGTGCATCA 59.290 34.615 0.00 0.00 36.98 3.07
2220 5134 7.391554 ACTGAAACTTTACACTATGTGCATCAT 59.608 33.333 0.00 0.00 36.98 2.45
2221 5135 7.529158 TGAAACTTTACACTATGTGCATCATG 58.471 34.615 10.77 0.00 36.98 3.07
2222 5136 7.174772 TGAAACTTTACACTATGTGCATCATGT 59.825 33.333 10.77 5.08 36.98 3.21
2279 5193 8.467402 AGACTGAACTACATAAATTTGAGTCG 57.533 34.615 0.00 0.00 0.00 4.18
2280 5194 8.304596 AGACTGAACTACATAAATTTGAGTCGA 58.695 33.333 0.00 0.00 0.00 4.20
2281 5195 8.240883 ACTGAACTACATAAATTTGAGTCGAC 57.759 34.615 7.70 7.70 0.00 4.20
2282 5196 7.870954 ACTGAACTACATAAATTTGAGTCGACA 59.129 33.333 19.50 0.00 0.00 4.35
2344 5266 2.228582 TCAACATGGCAAGTTCGAATGG 59.771 45.455 4.93 0.00 0.00 3.16
2345 5267 2.198827 ACATGGCAAGTTCGAATGGA 57.801 45.000 0.00 0.00 0.00 3.41
2346 5268 2.513753 ACATGGCAAGTTCGAATGGAA 58.486 42.857 0.00 0.00 0.00 3.53
2347 5269 2.890311 ACATGGCAAGTTCGAATGGAAA 59.110 40.909 0.00 0.00 36.14 3.13
2348 5270 3.244976 CATGGCAAGTTCGAATGGAAAC 58.755 45.455 0.00 0.00 36.14 2.78
2349 5271 2.582052 TGGCAAGTTCGAATGGAAACT 58.418 42.857 0.00 0.00 36.14 2.66
2350 5272 2.955660 TGGCAAGTTCGAATGGAAACTT 59.044 40.909 0.00 0.00 36.14 2.66
2351 5273 3.383185 TGGCAAGTTCGAATGGAAACTTT 59.617 39.130 0.00 0.00 36.14 2.66
2352 5274 4.580995 TGGCAAGTTCGAATGGAAACTTTA 59.419 37.500 0.00 0.00 36.14 1.85
2353 5275 5.242838 TGGCAAGTTCGAATGGAAACTTTAT 59.757 36.000 0.00 0.00 36.14 1.40
2354 5276 5.800438 GGCAAGTTCGAATGGAAACTTTATC 59.200 40.000 0.00 0.00 36.14 1.75
2355 5277 6.378582 GCAAGTTCGAATGGAAACTTTATCA 58.621 36.000 0.00 0.00 36.14 2.15
2356 5278 6.305638 GCAAGTTCGAATGGAAACTTTATCAC 59.694 38.462 0.00 0.00 36.14 3.06
2357 5279 7.584987 CAAGTTCGAATGGAAACTTTATCACT 58.415 34.615 0.00 0.00 36.14 3.41
2358 5280 7.133891 AGTTCGAATGGAAACTTTATCACTG 57.866 36.000 0.00 0.00 36.14 3.66
2359 5281 6.934645 AGTTCGAATGGAAACTTTATCACTGA 59.065 34.615 0.00 0.00 36.14 3.41
2401 5323 1.669502 GGCAAAATTCATCGTGCTGCA 60.670 47.619 0.00 0.00 37.17 4.41
2436 5358 7.095481 CGTGCTAATATAGTGTCATGATTTGCT 60.095 37.037 0.00 0.00 32.05 3.91
2531 5453 3.062466 GGCTTCGGGAAGGTTGGC 61.062 66.667 10.22 0.00 38.80 4.52
2540 5462 1.628846 GGGAAGGTTGGCTCAGAAGTA 59.371 52.381 0.00 0.00 0.00 2.24
2546 5468 0.532573 TTGGCTCAGAAGTAGCTCGG 59.467 55.000 0.00 0.00 39.97 4.63
2585 5507 4.523173 GGAATGGATGTCATTGCTCATGAT 59.477 41.667 0.00 0.00 46.48 2.45
2591 5513 5.123502 GGATGTCATTGCTCATGATCCATAC 59.876 44.000 0.00 5.80 44.11 2.39
2708 5630 7.317842 TCTAACACCGTCAACAACAAAAATA 57.682 32.000 0.00 0.00 0.00 1.40
2872 5795 8.686334 GTCCATTAATCCAAATGTTGATAGTGT 58.314 33.333 0.00 0.00 35.48 3.55
2921 5844 6.149308 TGGCTCATTTAGTTATGCCATTATCG 59.851 38.462 0.00 0.00 44.35 2.92
2934 5857 3.994392 GCCATTATCGTGGGTATAGTGTG 59.006 47.826 0.00 0.00 39.73 3.82
2972 5895 9.620259 AGACAGTAGACATTTCTTTTCTTTTCT 57.380 29.630 0.00 0.00 32.75 2.52
3015 5938 4.420522 TTGGCCTTTTTCTGATTGCTTT 57.579 36.364 3.32 0.00 0.00 3.51
3041 5964 1.079543 GTGTCAGGCAGCACTCGAT 60.080 57.895 0.00 0.00 33.22 3.59
3065 5988 0.753479 TTTTTGAAGAGCCACCGCCA 60.753 50.000 0.00 0.00 34.57 5.69
3170 6093 4.095632 TGTTTGTTTTGCAACGATCTCTGA 59.904 37.500 0.00 0.00 36.72 3.27
3175 6098 2.768253 TGCAACGATCTCTGAACCAT 57.232 45.000 0.00 0.00 0.00 3.55
3179 6102 4.141959 TGCAACGATCTCTGAACCATATCA 60.142 41.667 0.00 0.00 0.00 2.15
3203 6126 8.267894 TCATGCTAGCTTATCCTCTTAACTTTT 58.732 33.333 17.23 0.00 0.00 2.27
3204 6127 7.849804 TGCTAGCTTATCCTCTTAACTTTTG 57.150 36.000 17.23 0.00 0.00 2.44
3207 6130 4.950475 AGCTTATCCTCTTAACTTTTGCCC 59.050 41.667 0.00 0.00 0.00 5.36
3208 6131 4.201920 GCTTATCCTCTTAACTTTTGCCCG 60.202 45.833 0.00 0.00 0.00 6.13
3209 6132 1.530323 TCCTCTTAACTTTTGCCCGC 58.470 50.000 0.00 0.00 0.00 6.13
3279 6202 1.404035 GGTGCGTTGAAAGGTGAACTT 59.596 47.619 0.00 0.00 42.52 2.66
3338 6261 1.005450 GGTACTCCCATTGCCAAGGAA 59.995 52.381 0.00 0.00 0.00 3.36
3341 6264 3.303351 ACTCCCATTGCCAAGGAATAG 57.697 47.619 0.00 0.00 0.00 1.73
3346 6269 3.633986 CCCATTGCCAAGGAATAGACTTC 59.366 47.826 0.00 0.00 0.00 3.01
3347 6270 3.633986 CCATTGCCAAGGAATAGACTTCC 59.366 47.826 0.00 0.00 38.86 3.46
3348 6271 4.272489 CATTGCCAAGGAATAGACTTCCA 58.728 43.478 6.76 0.00 41.00 3.53
3351 6274 5.912149 TGCCAAGGAATAGACTTCCATAT 57.088 39.130 6.76 0.00 41.00 1.78
3519 6442 5.414360 GCAGTCAAGATTGTCTACTCATCA 58.586 41.667 0.00 0.00 0.00 3.07
3538 6461 0.468400 AGCTAGAGACCCGGATGACC 60.468 60.000 0.73 0.00 0.00 4.02
3558 6481 2.289694 CCTGGACACAAGAATTCTCCGT 60.290 50.000 8.78 6.55 0.00 4.69
3576 6499 1.303236 TGCCATGGTCACGAAAGGG 60.303 57.895 14.67 0.00 0.00 3.95
3606 6529 4.420522 ACCCATTTCAAGTGCATTTGTT 57.579 36.364 19.91 5.60 0.00 2.83
3612 6535 7.292292 CCATTTCAAGTGCATTTGTTAACATG 58.708 34.615 19.91 6.98 0.00 3.21
3615 6538 5.288015 TCAAGTGCATTTGTTAACATGGTG 58.712 37.500 19.91 9.64 0.00 4.17
3627 6550 6.179756 TGTTAACATGGTGAATGCTGACTAT 58.820 36.000 3.59 0.00 40.22 2.12
3633 6556 3.012518 GGTGAATGCTGACTATGTTGCT 58.987 45.455 0.00 0.00 0.00 3.91
3660 6583 0.033504 GAGGGCTCCGCATAATCGAA 59.966 55.000 0.00 0.00 0.00 3.71
3744 6667 0.687354 ATGTGGAGTCCAAGTTCGCT 59.313 50.000 15.09 0.00 34.18 4.93
3783 6706 2.592308 GACATCAGGGTGGAGGGC 59.408 66.667 0.00 0.00 0.00 5.19
3915 6838 1.408822 GGCAAGGTGGGATCGATTCTT 60.409 52.381 3.13 0.00 0.00 2.52
4193 7116 1.067060 GATAATTTTCCGCCCACCTGC 59.933 52.381 0.00 0.00 0.00 4.85
4259 7268 3.376918 GCCTGTTCTTGGGCCTGC 61.377 66.667 4.53 0.00 42.30 4.85
4276 7285 3.127721 GCCTGCTGTCCTACTTTTTGATC 59.872 47.826 0.00 0.00 0.00 2.92
4304 7340 3.521560 TCTTACTGTTGCTATGCCTTCG 58.478 45.455 0.00 0.00 0.00 3.79
4334 7370 8.450578 TTTTTGGATAGACATATCATCCACAC 57.549 34.615 2.07 0.00 46.07 3.82
4365 7401 7.537596 TTTATGGCTTCAAATTTCTCTGGAA 57.462 32.000 0.00 0.00 0.00 3.53
4382 7418 1.882623 GGAAGCTGAACCAAAGACCAG 59.117 52.381 0.00 0.00 0.00 4.00
4502 7542 2.341257 AGACATCACTGCATTCGTGTC 58.659 47.619 12.03 12.03 36.98 3.67
4564 7637 8.310677 CGACATCGTTATAACAAAAATGGAAG 57.689 34.615 15.67 2.98 34.11 3.46
4597 7670 5.864418 TTAGTACAGGTGAAGAGTGTTGT 57.136 39.130 0.00 0.00 0.00 3.32
4598 7671 4.323553 AGTACAGGTGAAGAGTGTTGTC 57.676 45.455 0.00 0.00 0.00 3.18
4599 7672 3.961408 AGTACAGGTGAAGAGTGTTGTCT 59.039 43.478 0.00 0.00 0.00 3.41
4600 7673 3.914426 ACAGGTGAAGAGTGTTGTCTT 57.086 42.857 0.00 0.00 39.59 3.01
4601 7674 4.222124 ACAGGTGAAGAGTGTTGTCTTT 57.778 40.909 0.00 0.00 36.89 2.52
4602 7675 4.589908 ACAGGTGAAGAGTGTTGTCTTTT 58.410 39.130 0.00 0.00 36.89 2.27
4603 7676 5.010282 ACAGGTGAAGAGTGTTGTCTTTTT 58.990 37.500 0.00 0.00 36.89 1.94
4624 7697 3.502123 TTTTTCCGGGTGATGAAGAGT 57.498 42.857 0.00 0.00 0.00 3.24
4625 7698 2.472695 TTTCCGGGTGATGAAGAGTG 57.527 50.000 0.00 0.00 0.00 3.51
4626 7699 1.348064 TTCCGGGTGATGAAGAGTGT 58.652 50.000 0.00 0.00 0.00 3.55
4627 7700 1.348064 TCCGGGTGATGAAGAGTGTT 58.652 50.000 0.00 0.00 0.00 3.32
4628 7701 1.001974 TCCGGGTGATGAAGAGTGTTG 59.998 52.381 0.00 0.00 0.00 3.33
4669 7742 4.080638 GGATCTCCTCTGAACCTGAAACAT 60.081 45.833 0.00 0.00 0.00 2.71
4674 7747 6.441924 TCTCCTCTGAACCTGAAACATATTCT 59.558 38.462 0.00 0.00 0.00 2.40
4690 7763 0.687354 TTCTGCTCTTGGGAGTGTCC 59.313 55.000 0.00 0.00 41.38 4.02
4703 7807 3.003480 GGAGTGTCCAATAGCAGTGAAC 58.997 50.000 0.00 0.00 36.28 3.18
4704 7808 3.003480 GAGTGTCCAATAGCAGTGAACC 58.997 50.000 0.00 0.00 0.00 3.62
4705 7809 2.084546 GTGTCCAATAGCAGTGAACCC 58.915 52.381 0.00 0.00 0.00 4.11
4709 7813 3.440522 GTCCAATAGCAGTGAACCCTTTC 59.559 47.826 0.00 0.00 0.00 2.62
4710 7814 3.073798 TCCAATAGCAGTGAACCCTTTCA 59.926 43.478 0.00 0.00 39.55 2.69
4711 7815 4.019174 CCAATAGCAGTGAACCCTTTCAT 58.981 43.478 0.00 0.00 43.72 2.57
4725 9076 2.041620 CCTTTCATCCACCTTTCTCCCA 59.958 50.000 0.00 0.00 0.00 4.37
4729 9080 1.075374 CATCCACCTTTCTCCCACCAA 59.925 52.381 0.00 0.00 0.00 3.67
4732 9083 1.203050 CCACCTTTCTCCCACCAACAT 60.203 52.381 0.00 0.00 0.00 2.71
4754 9105 6.884836 ACATGAACAACTAACCCTAATCCTTC 59.115 38.462 0.00 0.00 0.00 3.46
4755 9106 5.812286 TGAACAACTAACCCTAATCCTTCC 58.188 41.667 0.00 0.00 0.00 3.46
4757 10157 3.199289 ACAACTAACCCTAATCCTTCCCG 59.801 47.826 0.00 0.00 0.00 5.14
4767 10167 1.338136 ATCCTTCCCGATGCCGTTCT 61.338 55.000 0.00 0.00 0.00 3.01
4768 10168 1.815421 CCTTCCCGATGCCGTTCTG 60.815 63.158 0.00 0.00 0.00 3.02
4771 10171 2.829043 TTCCCGATGCCGTTCTGTCG 62.829 60.000 0.00 0.00 0.00 4.35
4773 10173 2.158959 CCGATGCCGTTCTGTCGTC 61.159 63.158 0.00 0.00 32.55 4.20
4778 10178 1.371389 GCCGTTCTGTCGTCGTCTT 60.371 57.895 0.00 0.00 0.00 3.01
4781 10181 1.319172 CGTTCTGTCGTCGTCTTCAG 58.681 55.000 0.00 0.00 0.00 3.02
4790 10190 1.226407 TCGTCTTCAGCTCGCATCG 60.226 57.895 0.00 0.00 0.00 3.84
4863 10263 7.967890 AAATTGATGATTTTGGTGAGGAAAC 57.032 32.000 0.00 0.00 34.27 2.78
4888 10290 3.323243 ACTGTCCACGAATTAGAAACCG 58.677 45.455 0.00 0.00 0.00 4.44
4892 10294 4.081862 TGTCCACGAATTAGAAACCGAGAT 60.082 41.667 0.00 0.00 0.00 2.75
4894 10296 4.158949 TCCACGAATTAGAAACCGAGATGA 59.841 41.667 0.00 0.00 0.00 2.92
4898 10300 6.477033 CACGAATTAGAAACCGAGATGAATCT 59.523 38.462 0.00 0.00 40.50 2.40
4943 10353 2.383442 ACGGACTCTATGCCAGGTAT 57.617 50.000 0.00 0.00 0.00 2.73
4944 10354 3.520691 ACGGACTCTATGCCAGGTATA 57.479 47.619 0.00 0.00 0.00 1.47
4945 10355 3.840991 ACGGACTCTATGCCAGGTATAA 58.159 45.455 0.00 0.00 0.00 0.98
4946 10356 3.827302 ACGGACTCTATGCCAGGTATAAG 59.173 47.826 0.00 2.81 0.00 1.73
4947 10357 3.827302 CGGACTCTATGCCAGGTATAAGT 59.173 47.826 10.23 10.23 0.00 2.24
4948 10358 5.008331 CGGACTCTATGCCAGGTATAAGTA 58.992 45.833 10.35 0.00 0.00 2.24
4949 10359 5.475909 CGGACTCTATGCCAGGTATAAGTAA 59.524 44.000 10.35 0.00 0.00 2.24
4950 10360 6.015688 CGGACTCTATGCCAGGTATAAGTAAA 60.016 42.308 10.35 0.00 0.00 2.01
4951 10361 7.153315 GGACTCTATGCCAGGTATAAGTAAAC 58.847 42.308 10.35 4.26 0.00 2.01
4975 10391 7.513856 ACGTAAAAGTAAAACCCTAAACCCTA 58.486 34.615 0.00 0.00 0.00 3.53
4976 10392 8.163408 ACGTAAAAGTAAAACCCTAAACCCTAT 58.837 33.333 0.00 0.00 0.00 2.57
4977 10393 9.013229 CGTAAAAGTAAAACCCTAAACCCTATT 57.987 33.333 0.00 0.00 0.00 1.73
4999 10421 5.699097 TTGTTTCTTACCCCAAATTCTCG 57.301 39.130 0.00 0.00 0.00 4.04
5012 10434 4.757149 CCAAATTCTCGTCCTCTGAGTTTT 59.243 41.667 3.66 0.00 34.99 2.43
5047 10469 4.319177 ACCCTTCTCTCAAATTCTCAACG 58.681 43.478 0.00 0.00 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.947244 CAGACACCTCAGGTTGCAAC 59.053 55.000 21.59 21.59 31.02 4.17
16 17 0.179020 CCAGACACCTCAGGTTGCAA 60.179 55.000 0.00 0.00 31.02 4.08
17 18 1.344953 ACCAGACACCTCAGGTTGCA 61.345 55.000 0.00 0.00 32.38 4.08
18 19 0.685097 TACCAGACACCTCAGGTTGC 59.315 55.000 0.00 0.00 37.48 4.17
19 20 3.007940 TCAATACCAGACACCTCAGGTTG 59.992 47.826 0.00 0.00 37.48 3.77
20 21 3.248024 TCAATACCAGACACCTCAGGTT 58.752 45.455 0.00 0.00 37.48 3.50
21 22 2.902608 TCAATACCAGACACCTCAGGT 58.097 47.619 0.00 0.00 39.55 4.00
22 23 3.981071 TTCAATACCAGACACCTCAGG 57.019 47.619 0.00 0.00 0.00 3.86
23 24 5.551233 TCTTTTCAATACCAGACACCTCAG 58.449 41.667 0.00 0.00 0.00 3.35
24 25 5.560722 TCTTTTCAATACCAGACACCTCA 57.439 39.130 0.00 0.00 0.00 3.86
25 26 6.314896 CAGATCTTTTCAATACCAGACACCTC 59.685 42.308 0.00 0.00 0.00 3.85
26 27 6.013379 TCAGATCTTTTCAATACCAGACACCT 60.013 38.462 0.00 0.00 0.00 4.00
27 28 6.173339 TCAGATCTTTTCAATACCAGACACC 58.827 40.000 0.00 0.00 0.00 4.16
28 29 7.672983 TTCAGATCTTTTCAATACCAGACAC 57.327 36.000 0.00 0.00 0.00 3.67
29 30 8.690203 TTTTCAGATCTTTTCAATACCAGACA 57.310 30.769 0.00 0.00 0.00 3.41
75 76 8.664798 CCACGTAGATTGACAATTCTTGAAATA 58.335 33.333 1.39 0.00 0.00 1.40
76 77 7.174946 ACCACGTAGATTGACAATTCTTGAAAT 59.825 33.333 1.39 0.00 0.00 2.17
77 78 6.485313 ACCACGTAGATTGACAATTCTTGAAA 59.515 34.615 1.39 0.00 0.00 2.69
78 79 5.995282 ACCACGTAGATTGACAATTCTTGAA 59.005 36.000 1.39 0.00 0.00 2.69
79 80 5.408299 CACCACGTAGATTGACAATTCTTGA 59.592 40.000 1.39 0.00 0.00 3.02
80 81 5.621422 CACCACGTAGATTGACAATTCTTG 58.379 41.667 1.39 1.42 0.00 3.02
81 82 4.154195 GCACCACGTAGATTGACAATTCTT 59.846 41.667 1.39 0.00 0.00 2.52
82 83 3.684788 GCACCACGTAGATTGACAATTCT 59.315 43.478 1.39 4.11 0.00 2.40
83 84 3.181510 GGCACCACGTAGATTGACAATTC 60.182 47.826 1.39 0.00 0.00 2.17
84 85 2.747446 GGCACCACGTAGATTGACAATT 59.253 45.455 1.39 0.00 0.00 2.32
85 86 2.027192 AGGCACCACGTAGATTGACAAT 60.027 45.455 0.00 0.00 0.00 2.71
86 87 1.346395 AGGCACCACGTAGATTGACAA 59.654 47.619 0.00 0.00 0.00 3.18
87 88 0.973632 AGGCACCACGTAGATTGACA 59.026 50.000 0.00 0.00 0.00 3.58
88 89 2.094762 AAGGCACCACGTAGATTGAC 57.905 50.000 0.00 0.00 0.00 3.18
89 90 2.811431 CAAAAGGCACCACGTAGATTGA 59.189 45.455 0.00 0.00 0.00 2.57
90 91 2.552315 ACAAAAGGCACCACGTAGATTG 59.448 45.455 0.00 0.00 0.00 2.67
91 92 2.858745 ACAAAAGGCACCACGTAGATT 58.141 42.857 0.00 0.00 0.00 2.40
92 93 2.561478 ACAAAAGGCACCACGTAGAT 57.439 45.000 0.00 0.00 0.00 1.98
93 94 2.335316 AACAAAAGGCACCACGTAGA 57.665 45.000 0.00 0.00 0.00 2.59
94 95 2.542824 CCAAACAAAAGGCACCACGTAG 60.543 50.000 0.00 0.00 0.00 3.51
95 96 1.405821 CCAAACAAAAGGCACCACGTA 59.594 47.619 0.00 0.00 0.00 3.57
96 97 0.174617 CCAAACAAAAGGCACCACGT 59.825 50.000 0.00 0.00 0.00 4.49
97 98 0.174617 ACCAAACAAAAGGCACCACG 59.825 50.000 0.00 0.00 0.00 4.94
98 99 2.006169 CAACCAAACAAAAGGCACCAC 58.994 47.619 0.00 0.00 0.00 4.16
99 100 1.902508 TCAACCAAACAAAAGGCACCA 59.097 42.857 0.00 0.00 0.00 4.17
100 101 2.682155 TCAACCAAACAAAAGGCACC 57.318 45.000 0.00 0.00 0.00 5.01
101 102 4.035091 GGATTTCAACCAAACAAAAGGCAC 59.965 41.667 0.00 0.00 0.00 5.01
102 103 4.195416 GGATTTCAACCAAACAAAAGGCA 58.805 39.130 0.00 0.00 0.00 4.75
103 104 3.563808 GGGATTTCAACCAAACAAAAGGC 59.436 43.478 0.00 0.00 0.00 4.35
104 105 4.775236 TGGGATTTCAACCAAACAAAAGG 58.225 39.130 0.00 0.00 32.89 3.11
105 106 4.273235 GCTGGGATTTCAACCAAACAAAAG 59.727 41.667 0.00 0.00 36.09 2.27
106 107 4.195416 GCTGGGATTTCAACCAAACAAAA 58.805 39.130 0.00 0.00 36.09 2.44
107 108 3.432890 GGCTGGGATTTCAACCAAACAAA 60.433 43.478 0.00 0.00 36.09 2.83
108 109 2.103941 GGCTGGGATTTCAACCAAACAA 59.896 45.455 0.00 0.00 36.09 2.83
109 110 1.691434 GGCTGGGATTTCAACCAAACA 59.309 47.619 0.00 0.00 36.09 2.83
110 111 1.691434 TGGCTGGGATTTCAACCAAAC 59.309 47.619 0.00 0.00 36.09 2.93
111 112 2.094100 TGGCTGGGATTTCAACCAAA 57.906 45.000 0.00 0.00 36.09 3.28
112 113 2.323999 ATGGCTGGGATTTCAACCAA 57.676 45.000 0.00 0.00 36.60 3.67
113 114 3.205056 AGATATGGCTGGGATTTCAACCA 59.795 43.478 0.00 0.00 37.31 3.67
114 115 3.837355 AGATATGGCTGGGATTTCAACC 58.163 45.455 0.00 0.00 0.00 3.77
115 116 5.416952 CCATAGATATGGCTGGGATTTCAAC 59.583 44.000 5.95 0.00 45.92 3.18
116 117 5.573219 CCATAGATATGGCTGGGATTTCAA 58.427 41.667 5.95 0.00 45.92 2.69
117 118 5.183530 CCATAGATATGGCTGGGATTTCA 57.816 43.478 5.95 0.00 45.92 2.69
152 153 3.752665 TGTCCATAGTTACCCGCAAAAA 58.247 40.909 0.00 0.00 0.00 1.94
153 154 3.420300 TGTCCATAGTTACCCGCAAAA 57.580 42.857 0.00 0.00 0.00 2.44
154 155 3.275143 CATGTCCATAGTTACCCGCAAA 58.725 45.455 0.00 0.00 0.00 3.68
155 156 2.237643 ACATGTCCATAGTTACCCGCAA 59.762 45.455 0.00 0.00 0.00 4.85
156 157 1.834896 ACATGTCCATAGTTACCCGCA 59.165 47.619 0.00 0.00 0.00 5.69
157 158 2.612212 CAACATGTCCATAGTTACCCGC 59.388 50.000 0.00 0.00 0.00 6.13
158 159 3.869065 ACAACATGTCCATAGTTACCCG 58.131 45.455 0.00 0.00 0.00 5.28
159 160 5.296035 GCTAACAACATGTCCATAGTTACCC 59.704 44.000 0.00 0.00 0.00 3.69
160 161 5.878116 TGCTAACAACATGTCCATAGTTACC 59.122 40.000 0.00 0.00 0.00 2.85
161 162 6.183360 GGTGCTAACAACATGTCCATAGTTAC 60.183 42.308 0.00 5.96 31.96 2.50
162 163 5.878116 GGTGCTAACAACATGTCCATAGTTA 59.122 40.000 0.00 3.60 31.96 2.24
163 164 4.700213 GGTGCTAACAACATGTCCATAGTT 59.300 41.667 0.00 2.58 31.96 2.24
164 165 4.261801 GGTGCTAACAACATGTCCATAGT 58.738 43.478 0.00 0.00 31.96 2.12
182 183 4.204028 ATGGGTATGGCCGGGTGC 62.204 66.667 2.18 0.00 38.44 5.01
194 195 1.306296 CGAAATGGGTGGGATGGGT 59.694 57.895 0.00 0.00 0.00 4.51
200 201 3.322541 AGGTTAAAAACGAAATGGGTGGG 59.677 43.478 0.00 0.00 0.00 4.61
265 267 2.234908 ACTTCTCCCTCGACCATCAAAG 59.765 50.000 0.00 0.00 0.00 2.77
271 273 1.248785 CGGAACTTCTCCCTCGACCA 61.249 60.000 0.00 0.00 41.87 4.02
279 281 1.480954 TGCTATGTCCGGAACTTCTCC 59.519 52.381 5.23 0.00 41.40 3.71
288 290 3.254657 TGAAAAGGTTTTGCTATGTCCGG 59.745 43.478 0.00 0.00 0.00 5.14
325 327 5.553162 TGGCTGGGATTATAAGATCCATTCT 59.447 40.000 7.30 0.00 46.11 2.40
331 333 6.479884 AGTCAATGGCTGGGATTATAAGATC 58.520 40.000 0.00 0.00 0.00 2.75
397 402 8.034804 ACTATCCAAAGTTTATTGCACCATTTC 58.965 33.333 0.00 0.00 0.00 2.17
441 446 5.791480 CGGTTTTGAAATATCGTGGTACAAC 59.209 40.000 0.00 0.00 44.16 3.32
450 455 8.850454 ATATTTGGTTCGGTTTTGAAATATCG 57.150 30.769 0.00 0.00 0.00 2.92
480 485 5.505181 TTCTCTTTTTCTCCTGCCTACAT 57.495 39.130 0.00 0.00 0.00 2.29
482 487 6.635030 TTTTTCTCTTTTTCTCCTGCCTAC 57.365 37.500 0.00 0.00 0.00 3.18
540 556 7.130917 CCGATTTTGTCTTCTTCATCATCATC 58.869 38.462 0.00 0.00 0.00 2.92
541 557 6.459298 GCCGATTTTGTCTTCTTCATCATCAT 60.459 38.462 0.00 0.00 0.00 2.45
542 558 5.163723 GCCGATTTTGTCTTCTTCATCATCA 60.164 40.000 0.00 0.00 0.00 3.07
543 559 5.163723 TGCCGATTTTGTCTTCTTCATCATC 60.164 40.000 0.00 0.00 0.00 2.92
544 560 4.701651 TGCCGATTTTGTCTTCTTCATCAT 59.298 37.500 0.00 0.00 0.00 2.45
546 562 4.685169 TGCCGATTTTGTCTTCTTCATC 57.315 40.909 0.00 0.00 0.00 2.92
547 563 5.183713 TCAATGCCGATTTTGTCTTCTTCAT 59.816 36.000 0.00 0.00 0.00 2.57
549 565 5.046910 TCAATGCCGATTTTGTCTTCTTC 57.953 39.130 0.00 0.00 0.00 2.87
550 566 5.649782 ATCAATGCCGATTTTGTCTTCTT 57.350 34.783 0.00 0.00 0.00 2.52
553 569 6.071952 ACAACTATCAATGCCGATTTTGTCTT 60.072 34.615 0.00 0.00 30.40 3.01
577 1913 3.380004 TGTGAATTCGGCCCATTGATAAC 59.620 43.478 0.00 0.00 0.00 1.89
609 1945 6.953101 TCAATGGTACTGGCTAGTTCAATTA 58.047 36.000 8.46 0.00 38.36 1.40
655 1991 9.410556 CCAAATTCCAAACACAACTCTATAAAG 57.589 33.333 0.00 0.00 0.00 1.85
660 1997 7.286546 TCAATCCAAATTCCAAACACAACTCTA 59.713 33.333 0.00 0.00 0.00 2.43
665 2002 8.152309 GAATTCAATCCAAATTCCAAACACAA 57.848 30.769 0.00 0.00 37.22 3.33
674 2011 6.642430 TGTCATGGGAATTCAATCCAAATTC 58.358 36.000 7.93 0.00 41.55 2.17
686 2023 9.896645 GTACTCATATATCATGTCATGGGAATT 57.103 33.333 12.90 0.00 0.00 2.17
741 3248 4.934356 ACTAGGCCATGGAGAAATTCAAA 58.066 39.130 18.40 0.00 0.00 2.69
768 3283 4.466015 GCACTCCTCCAAATTCCCAAAATA 59.534 41.667 0.00 0.00 0.00 1.40
792 3308 1.229951 TGGAGGCCCCTTGTCAGAT 60.230 57.895 0.00 0.00 35.38 2.90
818 3334 2.415168 CGTCCGCACAACATTTCAGTAT 59.585 45.455 0.00 0.00 0.00 2.12
864 3388 4.416738 AGCTTTGCTCCCTCGCCC 62.417 66.667 0.00 0.00 30.62 6.13
865 3389 3.130160 CAGCTTTGCTCCCTCGCC 61.130 66.667 0.00 0.00 36.40 5.54
891 3415 2.813908 GTGTTCCGCCTACGCCTG 60.814 66.667 0.00 0.00 38.22 4.85
892 3416 4.430765 CGTGTTCCGCCTACGCCT 62.431 66.667 0.00 0.00 38.22 5.52
928 3452 4.041723 GGAATCTGGAACGTTTGTTGTTG 58.958 43.478 0.46 0.00 38.78 3.33
979 3503 1.443702 CGTAGCTGTGCGCAGTGTA 60.444 57.895 27.02 16.48 44.32 2.90
1149 3692 1.592669 CCTCGTGGCATCCGATGAC 60.593 63.158 12.79 10.13 39.32 3.06
1589 4138 3.296709 GAAGAGAACGAGGGGCGCA 62.297 63.158 10.83 0.00 46.04 6.09
1593 4142 0.533032 GGTGAGAAGAGAACGAGGGG 59.467 60.000 0.00 0.00 0.00 4.79
1594 4143 1.067495 GTGGTGAGAAGAGAACGAGGG 60.067 57.143 0.00 0.00 0.00 4.30
1596 4145 2.034685 TGTGTGGTGAGAAGAGAACGAG 59.965 50.000 0.00 0.00 0.00 4.18
1597 4146 2.028876 TGTGTGGTGAGAAGAGAACGA 58.971 47.619 0.00 0.00 0.00 3.85
1599 4148 2.128035 CGTGTGTGGTGAGAAGAGAAC 58.872 52.381 0.00 0.00 0.00 3.01
1608 4165 3.140225 TACGCAGCGTGTGTGGTGA 62.140 57.895 30.67 4.47 41.73 4.02
1612 4169 1.071019 CTACCTACGCAGCGTGTGTG 61.071 60.000 30.67 16.92 41.73 3.82
1613 4170 1.211969 CTACCTACGCAGCGTGTGT 59.788 57.895 30.67 25.92 44.22 3.72
1685 4263 2.472861 GTGTGAGTCGTCAGAACACATG 59.527 50.000 0.00 0.00 42.80 3.21
1704 4282 1.567504 AAGTCGAACACTCAACGGTG 58.432 50.000 0.00 0.00 42.34 4.94
1705 4283 2.360165 AGTAAGTCGAACACTCAACGGT 59.640 45.455 0.00 0.00 32.30 4.83
1706 4284 3.009301 AGTAAGTCGAACACTCAACGG 57.991 47.619 0.00 0.00 32.30 4.44
1771 4350 8.992835 ACTCAAATGCTGAAATTTTAGAATCC 57.007 30.769 13.77 0.00 32.17 3.01
1813 4404 7.800092 AGATGGTTGCTTAATAGATCTCTGTT 58.200 34.615 0.00 0.00 0.00 3.16
1814 4405 7.372260 AGATGGTTGCTTAATAGATCTCTGT 57.628 36.000 0.00 0.00 0.00 3.41
1852 4721 7.101700 TCATATATTCCATAGAGCAACAGCAG 58.898 38.462 0.00 0.00 0.00 4.24
1901 4775 2.063541 GATCGAGCAAATTGCCCCCG 62.064 60.000 15.04 15.20 46.52 5.73
1912 4790 1.001268 GTAGGATTCTGCGATCGAGCA 60.001 52.381 21.57 7.25 45.96 4.26
1924 4802 7.548196 TTGGTCAAAATACATCGTAGGATTC 57.452 36.000 0.00 0.00 0.00 2.52
1932 4810 7.747888 TGAAGTACATTGGTCAAAATACATCG 58.252 34.615 0.00 0.00 0.00 3.84
1936 4814 7.698130 GCAGATGAAGTACATTGGTCAAAATAC 59.302 37.037 0.00 0.00 39.56 1.89
1938 4816 6.209192 TGCAGATGAAGTACATTGGTCAAAAT 59.791 34.615 0.00 0.00 39.56 1.82
1940 4818 5.069318 TGCAGATGAAGTACATTGGTCAAA 58.931 37.500 0.00 0.00 39.56 2.69
1942 4820 4.284829 TGCAGATGAAGTACATTGGTCA 57.715 40.909 0.00 0.00 39.56 4.02
1943 4821 4.697352 AGTTGCAGATGAAGTACATTGGTC 59.303 41.667 0.00 0.00 39.56 4.02
1944 4822 4.655963 AGTTGCAGATGAAGTACATTGGT 58.344 39.130 0.00 0.00 39.56 3.67
1946 4824 7.369803 ACTAAGTTGCAGATGAAGTACATTG 57.630 36.000 0.00 0.00 39.56 2.82
1950 4853 7.432838 GCTAGTACTAAGTTGCAGATGAAGTAC 59.567 40.741 15.19 15.19 38.59 2.73
1959 4862 9.021863 GTATTAACAGCTAGTACTAAGTTGCAG 57.978 37.037 18.21 11.68 30.22 4.41
1972 4875 8.624701 TGCGTACTAAAAGTATTAACAGCTAG 57.375 34.615 0.00 0.00 32.65 3.42
1973 4876 8.984891 TTGCGTACTAAAAGTATTAACAGCTA 57.015 30.769 0.00 0.00 32.65 3.32
1974 4877 7.894376 TTGCGTACTAAAAGTATTAACAGCT 57.106 32.000 0.00 0.00 32.65 4.24
1983 4886 7.654520 AGAGAACACATTTGCGTACTAAAAGTA 59.345 33.333 0.00 0.00 0.00 2.24
1994 4897 2.549754 ACTGGAAGAGAACACATTTGCG 59.450 45.455 0.00 0.00 37.43 4.85
1996 4899 9.533253 AAAATTAACTGGAAGAGAACACATTTG 57.467 29.630 0.00 0.00 37.43 2.32
2075 4980 3.354948 TGGATCACCAAACAGGATCAG 57.645 47.619 0.00 0.00 43.91 2.90
2103 5008 1.059264 GAGCGACAGTGTGCGATTAAC 59.941 52.381 16.04 2.07 35.87 2.01
2106 5011 2.088763 CGAGCGACAGTGTGCGATT 61.089 57.895 16.04 6.01 35.87 3.34
2107 5012 2.504899 CGAGCGACAGTGTGCGAT 60.505 61.111 16.04 11.22 35.87 4.58
2108 5013 4.700365 CCGAGCGACAGTGTGCGA 62.700 66.667 16.04 0.00 35.87 5.10
2110 5015 3.406361 CACCGAGCGACAGTGTGC 61.406 66.667 0.00 4.96 0.00 4.57
2111 5016 2.492449 ATCCACCGAGCGACAGTGTG 62.492 60.000 0.00 0.00 0.00 3.82
2119 5024 9.745880 AGTAATAATAATATAATCCACCGAGCG 57.254 33.333 0.00 0.00 0.00 5.03
2138 5049 8.521176 AGAAAGAGAACGAAGCTACAGTAATAA 58.479 33.333 0.00 0.00 0.00 1.40
2159 5070 9.950680 TCAAAGTAGCAACAATAAAAGAGAAAG 57.049 29.630 0.00 0.00 0.00 2.62
2217 5131 9.558396 TGTACTAATTCAATATGATGCACATGA 57.442 29.630 0.00 1.13 39.77 3.07
2218 5132 9.603298 GTGTACTAATTCAATATGATGCACATG 57.397 33.333 10.77 0.00 39.77 3.21
2219 5133 9.565090 AGTGTACTAATTCAATATGATGCACAT 57.435 29.630 0.00 0.00 42.39 3.21
2220 5134 8.829612 CAGTGTACTAATTCAATATGATGCACA 58.170 33.333 0.00 0.00 0.00 4.57
2221 5135 9.045223 TCAGTGTACTAATTCAATATGATGCAC 57.955 33.333 0.00 0.00 0.00 4.57
2222 5136 9.612066 TTCAGTGTACTAATTCAATATGATGCA 57.388 29.630 0.00 0.00 0.00 3.96
2279 5193 2.555199 ACTCTGTTCTTGCACACTGTC 58.445 47.619 0.00 0.00 0.00 3.51
2280 5194 2.698855 ACTCTGTTCTTGCACACTGT 57.301 45.000 0.00 0.00 0.00 3.55
2281 5195 5.008019 ACAATTACTCTGTTCTTGCACACTG 59.992 40.000 0.00 0.00 0.00 3.66
2282 5196 5.126067 ACAATTACTCTGTTCTTGCACACT 58.874 37.500 0.00 0.00 0.00 3.55
2344 5266 8.976986 AGCATTTCATTCAGTGATAAAGTTTC 57.023 30.769 0.00 0.00 36.54 2.78
2379 5301 2.256174 CAGCACGATGAATTTTGCCAG 58.744 47.619 0.00 0.00 35.47 4.85
2383 5305 2.659757 CAGTGCAGCACGATGAATTTTG 59.340 45.455 19.96 5.60 39.64 2.44
2386 5308 0.169672 GCAGTGCAGCACGATGAATT 59.830 50.000 19.96 0.00 39.64 2.17
2436 5358 4.936411 CCATTTGCCTGAATATGCACAAAA 59.064 37.500 4.12 0.00 37.18 2.44
2501 5423 3.451178 TCCCGAAGCCCATAATAGCTATC 59.549 47.826 6.72 0.00 38.74 2.08
2531 5453 1.587613 GCGCCGAGCTACTTCTGAG 60.588 63.158 0.00 0.00 44.04 3.35
2546 5468 4.445545 CCAAGTCCTTTCGCGCGC 62.446 66.667 27.95 23.91 0.00 6.86
2585 5507 1.252215 TGTCAACGGGAGCGTATGGA 61.252 55.000 0.00 0.00 0.00 3.41
2591 5513 2.811317 GCTCTGTCAACGGGAGCG 60.811 66.667 10.56 0.00 42.03 5.03
2624 5546 4.090642 GCATCATCGAACGATACAAGATCC 59.909 45.833 9.33 0.00 32.93 3.36
2708 5630 5.437289 TTGCAAAAGTCTCATCGTTGAAT 57.563 34.783 0.00 0.00 0.00 2.57
2898 5821 7.017645 CACGATAATGGCATAACTAAATGAGC 58.982 38.462 0.00 0.00 0.00 4.26
2921 5844 9.204570 CTATGCTAAATAACACACTATACCCAC 57.795 37.037 0.00 0.00 0.00 4.61
2972 5895 7.597386 CCAATGGAAACCTTTTGAAACAAAAA 58.403 30.769 0.00 0.00 0.00 1.94
3015 5938 1.668793 CTGCCTGACACACATCGCA 60.669 57.895 0.00 0.00 34.22 5.10
3047 5970 0.753479 TTGGCGGTGGCTCTTCAAAA 60.753 50.000 0.00 0.00 39.81 2.44
3065 5988 5.433526 TGGTGTACTAACTTGCTGTCTTTT 58.566 37.500 0.00 0.00 0.00 2.27
3170 6093 6.443206 AGAGGATAAGCTAGCATGATATGGTT 59.557 38.462 18.83 1.18 41.83 3.67
3175 6098 8.657387 AGTTAAGAGGATAAGCTAGCATGATA 57.343 34.615 18.83 4.80 0.00 2.15
3179 6102 7.012799 GCAAAAGTTAAGAGGATAAGCTAGCAT 59.987 37.037 18.83 7.77 0.00 3.79
3207 6130 1.337817 CTTCCTGTCGACGAACAGCG 61.338 60.000 11.62 12.25 44.34 5.18
3208 6131 1.009389 CCTTCCTGTCGACGAACAGC 61.009 60.000 11.62 0.15 44.34 4.40
3209 6132 1.009389 GCCTTCCTGTCGACGAACAG 61.009 60.000 11.62 15.93 45.10 3.16
3279 6202 1.228337 ATTGACAGCAGTGGCAGCA 60.228 52.632 1.37 0.00 44.85 4.41
3341 6264 7.874940 TGCATTATGCTGTAAATATGGAAGTC 58.125 34.615 18.44 0.00 45.31 3.01
3346 6269 8.355169 AGAGTTTGCATTATGCTGTAAATATGG 58.645 33.333 18.44 0.00 45.31 2.74
3347 6270 9.177304 CAGAGTTTGCATTATGCTGTAAATATG 57.823 33.333 18.44 11.79 45.31 1.78
3367 6290 4.265073 ACTGTTCAAACTGAAGCAGAGTT 58.735 39.130 17.85 0.00 37.00 3.01
3398 6321 0.739813 CTCGGCTAAAACCTGTCGGG 60.740 60.000 0.00 0.00 41.89 5.14
3519 6442 0.468400 GGTCATCCGGGTCTCTAGCT 60.468 60.000 0.00 0.00 0.00 3.32
3538 6461 2.738846 CACGGAGAATTCTTGTGTCCAG 59.261 50.000 23.46 13.39 31.90 3.86
3558 6481 1.303236 CCCTTTCGTGACCATGGCA 60.303 57.895 13.04 8.31 0.00 4.92
3576 6499 3.000727 ACTTGAAATGGGTTCGACGATC 58.999 45.455 0.00 0.00 39.30 3.69
3606 6529 5.744171 ACATAGTCAGCATTCACCATGTTA 58.256 37.500 0.00 0.00 34.98 2.41
3612 6535 3.012518 AGCAACATAGTCAGCATTCACC 58.987 45.455 0.00 0.00 0.00 4.02
3615 6538 4.333649 TGCTTAGCAACATAGTCAGCATTC 59.666 41.667 3.67 0.00 34.76 2.67
3633 6556 2.577059 CGGAGCCCTCGTTGCTTA 59.423 61.111 0.00 0.00 39.69 3.09
3660 6583 1.021202 CGTCGAGGAGAATCTGCTCT 58.979 55.000 25.38 3.93 44.85 4.09
3744 6667 4.273257 TCGTCAGACAACGCGCCA 62.273 61.111 5.73 0.00 42.31 5.69
3783 6706 0.451783 GCGTGCCATCCTTAACCTTG 59.548 55.000 0.00 0.00 0.00 3.61
3915 6838 1.628340 ACATTCAGGTTCATCGTCCCA 59.372 47.619 0.00 0.00 0.00 4.37
3966 6889 1.076559 CATGATGGCCTGCTTCCCA 60.077 57.895 3.32 0.00 35.21 4.37
4162 7085 7.721842 TGGGCGGAAAATTATCATTCTACATAA 59.278 33.333 0.00 0.00 0.00 1.90
4174 7097 1.111277 GCAGGTGGGCGGAAAATTAT 58.889 50.000 0.00 0.00 0.00 1.28
4183 7106 4.711949 AGCTTCTGCAGGTGGGCG 62.712 66.667 15.13 0.00 42.74 6.13
4193 7116 3.808466 TGTATCTACCAGCAGCTTCTG 57.192 47.619 6.37 6.37 34.12 3.02
4259 7268 5.419542 TCATCCGATCAAAAAGTAGGACAG 58.580 41.667 0.00 0.00 0.00 3.51
4276 7285 4.151335 GCATAGCAACAGTAAGATCATCCG 59.849 45.833 0.00 0.00 0.00 4.18
4304 7340 8.787852 GGATGATATGTCTATCCAAAAAGTTCC 58.212 37.037 12.72 0.00 40.07 3.62
4365 7401 1.212935 ACACTGGTCTTTGGTTCAGCT 59.787 47.619 0.00 0.00 0.00 4.24
4382 7418 6.643770 AGATCATGCAATTTGTTTCAGAACAC 59.356 34.615 0.00 0.00 45.01 3.32
4568 7641 8.594550 ACACTCTTCACCTGTACTAATTGTTAT 58.405 33.333 0.00 0.00 0.00 1.89
4581 7654 5.567138 AAAAAGACAACACTCTTCACCTG 57.433 39.130 0.00 0.00 29.74 4.00
4604 7677 3.146066 CACTCTTCATCACCCGGAAAAA 58.854 45.455 0.73 0.00 0.00 1.94
4605 7678 2.105821 ACACTCTTCATCACCCGGAAAA 59.894 45.455 0.73 0.00 0.00 2.29
4606 7679 1.697432 ACACTCTTCATCACCCGGAAA 59.303 47.619 0.73 0.00 0.00 3.13
4607 7680 1.348064 ACACTCTTCATCACCCGGAA 58.652 50.000 0.73 0.00 0.00 4.30
4608 7681 1.001974 CAACACTCTTCATCACCCGGA 59.998 52.381 0.73 0.00 0.00 5.14
4609 7682 1.270839 ACAACACTCTTCATCACCCGG 60.271 52.381 0.00 0.00 0.00 5.73
4610 7683 2.069273 GACAACACTCTTCATCACCCG 58.931 52.381 0.00 0.00 0.00 5.28
4611 7684 3.070018 CTGACAACACTCTTCATCACCC 58.930 50.000 0.00 0.00 0.00 4.61
4612 7685 3.733337 ACTGACAACACTCTTCATCACC 58.267 45.455 0.00 0.00 0.00 4.02
4613 7686 4.626042 AGACTGACAACACTCTTCATCAC 58.374 43.478 0.00 0.00 0.00 3.06
4614 7687 4.944619 AGACTGACAACACTCTTCATCA 57.055 40.909 0.00 0.00 0.00 3.07
4615 7688 6.625362 TCATAGACTGACAACACTCTTCATC 58.375 40.000 0.00 0.00 0.00 2.92
4616 7689 6.596309 TCATAGACTGACAACACTCTTCAT 57.404 37.500 0.00 0.00 0.00 2.57
4617 7690 6.405278 TTCATAGACTGACAACACTCTTCA 57.595 37.500 0.00 0.00 32.17 3.02
4618 7691 7.439655 ACTTTTCATAGACTGACAACACTCTTC 59.560 37.037 0.00 0.00 32.17 2.87
4619 7692 7.275920 ACTTTTCATAGACTGACAACACTCTT 58.724 34.615 0.00 0.00 32.17 2.85
4620 7693 6.821388 ACTTTTCATAGACTGACAACACTCT 58.179 36.000 0.00 0.00 32.17 3.24
4621 7694 7.348201 CAACTTTTCATAGACTGACAACACTC 58.652 38.462 0.00 0.00 32.17 3.51
4622 7695 6.260936 CCAACTTTTCATAGACTGACAACACT 59.739 38.462 0.00 0.00 32.17 3.55
4623 7696 6.260050 TCCAACTTTTCATAGACTGACAACAC 59.740 38.462 0.00 0.00 32.17 3.32
4624 7697 6.353323 TCCAACTTTTCATAGACTGACAACA 58.647 36.000 0.00 0.00 32.17 3.33
4625 7698 6.861065 TCCAACTTTTCATAGACTGACAAC 57.139 37.500 0.00 0.00 32.17 3.32
4626 7699 7.453393 AGATCCAACTTTTCATAGACTGACAA 58.547 34.615 0.00 0.00 32.17 3.18
4627 7700 7.009179 AGATCCAACTTTTCATAGACTGACA 57.991 36.000 0.00 0.00 32.17 3.58
4628 7701 6.536941 GGAGATCCAACTTTTCATAGACTGAC 59.463 42.308 0.00 0.00 32.34 3.51
4638 7711 4.697828 GGTTCAGAGGAGATCCAACTTTTC 59.302 45.833 0.92 0.00 38.89 2.29
4669 7742 2.501723 GGACACTCCCAAGAGCAGAATA 59.498 50.000 0.00 0.00 44.65 1.75
4674 7747 2.538790 TTGGACACTCCCAAGAGCA 58.461 52.632 0.00 0.00 44.65 4.26
4690 7763 4.096984 GGATGAAAGGGTTCACTGCTATTG 59.903 45.833 0.00 0.00 46.40 1.90
4703 7807 2.621668 GGGAGAAAGGTGGATGAAAGGG 60.622 54.545 0.00 0.00 0.00 3.95
4704 7808 2.041620 TGGGAGAAAGGTGGATGAAAGG 59.958 50.000 0.00 0.00 0.00 3.11
4705 7809 3.084786 GTGGGAGAAAGGTGGATGAAAG 58.915 50.000 0.00 0.00 0.00 2.62
4709 7813 0.698238 TGGTGGGAGAAAGGTGGATG 59.302 55.000 0.00 0.00 0.00 3.51
4710 7814 1.075536 GTTGGTGGGAGAAAGGTGGAT 59.924 52.381 0.00 0.00 0.00 3.41
4711 7815 0.476771 GTTGGTGGGAGAAAGGTGGA 59.523 55.000 0.00 0.00 0.00 4.02
4725 9076 4.178956 AGGGTTAGTTGTTCATGTTGGT 57.821 40.909 0.00 0.00 0.00 3.67
4729 9080 6.388619 AGGATTAGGGTTAGTTGTTCATGT 57.611 37.500 0.00 0.00 0.00 3.21
4732 9083 5.280830 GGGAAGGATTAGGGTTAGTTGTTCA 60.281 44.000 0.00 0.00 0.00 3.18
4754 9105 2.885644 CGACAGAACGGCATCGGG 60.886 66.667 0.00 0.00 41.39 5.14
4755 9106 2.126071 ACGACAGAACGGCATCGG 60.126 61.111 0.00 0.00 41.39 4.18
4757 10157 1.403972 GACGACGACAGAACGGCATC 61.404 60.000 0.00 0.00 41.84 3.91
4767 10167 1.206831 CGAGCTGAAGACGACGACA 59.793 57.895 0.00 0.00 0.00 4.35
4768 10168 2.147133 GCGAGCTGAAGACGACGAC 61.147 63.158 0.00 0.00 0.00 4.34
4771 10171 1.467556 CGATGCGAGCTGAAGACGAC 61.468 60.000 0.00 0.00 0.00 4.34
4773 10173 1.199229 CTCGATGCGAGCTGAAGACG 61.199 60.000 3.76 0.00 46.75 4.18
4804 10204 3.041940 GTGTCCGACGGTGGCAAG 61.042 66.667 14.79 0.00 0.00 4.01
4805 10205 4.953868 CGTGTCCGACGGTGGCAA 62.954 66.667 14.79 0.00 44.85 4.52
4813 10213 2.218075 GTCTTTCTTGTTCGTGTCCGAC 59.782 50.000 0.00 0.00 44.13 4.79
4814 10214 2.159212 TGTCTTTCTTGTTCGTGTCCGA 60.159 45.455 0.00 0.00 42.41 4.55
4863 10263 5.107065 GGTTTCTAATTCGTGGACAGTCAAG 60.107 44.000 2.17 0.00 0.00 3.02
4888 10290 3.129462 TCGTCCACTCACAGATTCATCTC 59.871 47.826 0.00 0.00 34.22 2.75
4892 10294 1.546029 CCTCGTCCACTCACAGATTCA 59.454 52.381 0.00 0.00 0.00 2.57
4894 10296 0.898320 CCCTCGTCCACTCACAGATT 59.102 55.000 0.00 0.00 0.00 2.40
4898 10300 0.178955 TTACCCCTCGTCCACTCACA 60.179 55.000 0.00 0.00 0.00 3.58
4946 10356 9.445786 GGTTTAGGGTTTTACTTTTACGTTTAC 57.554 33.333 0.00 0.00 0.00 2.01
4947 10357 8.625651 GGGTTTAGGGTTTTACTTTTACGTTTA 58.374 33.333 0.00 0.00 0.00 2.01
4948 10358 7.341769 AGGGTTTAGGGTTTTACTTTTACGTTT 59.658 33.333 0.00 0.00 0.00 3.60
4949 10359 6.833416 AGGGTTTAGGGTTTTACTTTTACGTT 59.167 34.615 0.00 0.00 0.00 3.99
4950 10360 6.364701 AGGGTTTAGGGTTTTACTTTTACGT 58.635 36.000 0.00 0.00 0.00 3.57
4951 10361 6.882610 AGGGTTTAGGGTTTTACTTTTACG 57.117 37.500 0.00 0.00 0.00 3.18
4975 10391 6.266786 ACGAGAATTTGGGGTAAGAAACAAAT 59.733 34.615 0.00 0.00 43.20 2.32
4976 10392 5.595133 ACGAGAATTTGGGGTAAGAAACAAA 59.405 36.000 0.00 0.00 37.25 2.83
4977 10393 5.134661 ACGAGAATTTGGGGTAAGAAACAA 58.865 37.500 0.00 0.00 0.00 2.83
4999 10421 1.797025 CCACGGAAAACTCAGAGGAC 58.203 55.000 1.53 0.00 0.00 3.85
5047 10469 0.818040 GATGTGGTATTGGGCGTCCC 60.818 60.000 2.12 5.67 45.71 4.46
5053 10475 1.869754 CGCTCTCGATGTGGTATTGGG 60.870 57.143 0.00 0.00 38.10 4.12
5055 10477 1.067060 TCCGCTCTCGATGTGGTATTG 59.933 52.381 14.94 0.00 38.10 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.