Multiple sequence alignment - TraesCS7B01G399700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G399700 chr7B 100.000 4685 0 0 1 4685 666322088 666326772 0.000000e+00 8652.0
1 TraesCS7B01G399700 chr7B 94.517 1769 76 14 1972 3727 665677897 665679657 0.000000e+00 2710.0
2 TraesCS7B01G399700 chr7B 96.053 1140 34 3 681 1810 665676620 665677758 0.000000e+00 1845.0
3 TraesCS7B01G399700 chr7B 81.761 1738 285 22 1999 3721 666411042 666412762 0.000000e+00 1424.0
4 TraesCS7B01G399700 chr7B 92.407 777 43 7 1048 1813 665558697 665557926 0.000000e+00 1094.0
5 TraesCS7B01G399700 chr7B 88.023 860 91 3 2736 3595 460280146 460279299 0.000000e+00 1007.0
6 TraesCS7B01G399700 chr7B 96.564 553 11 4 1 551 665676103 665676649 0.000000e+00 909.0
7 TraesCS7B01G399700 chr7B 87.774 638 57 17 940 1563 460281457 460280827 0.000000e+00 726.0
8 TraesCS7B01G399700 chr7B 86.780 590 65 11 3563 4150 665688293 665688871 0.000000e+00 645.0
9 TraesCS7B01G399700 chr7B 88.757 338 23 7 3983 4308 460279230 460278896 2.630000e-107 399.0
10 TraesCS7B01G399700 chr7B 90.667 150 11 3 4225 4373 665688840 665688987 3.700000e-46 196.0
11 TraesCS7B01G399700 chr7B 86.207 145 7 5 921 1052 665570197 665570053 1.360000e-30 145.0
12 TraesCS7B01G399700 chr7D 92.487 1970 129 11 1961 3926 590818820 590816866 0.000000e+00 2800.0
13 TraesCS7B01G399700 chr7D 93.610 892 49 4 920 1807 590820039 590819152 0.000000e+00 1325.0
14 TraesCS7B01G399700 chr7D 82.982 1375 216 16 2367 3728 590855007 590856376 0.000000e+00 1227.0
15 TraesCS7B01G399700 chr7D 96.000 75 3 0 4399 4473 261896126 261896052 6.370000e-24 122.0
16 TraesCS7B01G399700 chr7D 84.874 119 15 3 548 663 135973628 135973510 2.960000e-22 117.0
17 TraesCS7B01G399700 chr5B 94.004 1651 97 2 2061 3709 93447471 93449121 0.000000e+00 2499.0
18 TraesCS7B01G399700 chr5B 96.000 75 3 0 4399 4473 485633556 485633482 6.370000e-24 122.0
19 TraesCS7B01G399700 chr5B 88.298 94 9 2 4399 4492 476888424 476888515 1.380000e-20 111.0
20 TraesCS7B01G399700 chr3B 90.904 1638 141 3 1959 3595 593545257 593546887 0.000000e+00 2193.0
21 TraesCS7B01G399700 chr3B 86.039 659 54 17 938 1563 593544068 593544721 0.000000e+00 673.0
22 TraesCS7B01G399700 chr3B 93.590 78 5 0 4399 4476 775823796 775823873 2.960000e-22 117.0
23 TraesCS7B01G399700 chr3A 88.372 860 88 3 2736 3595 459077560 459076713 0.000000e+00 1024.0
24 TraesCS7B01G399700 chr3A 88.438 640 53 17 938 1563 459078873 459078241 0.000000e+00 752.0
25 TraesCS7B01G399700 chr3A 88.757 338 23 7 3983 4308 459076644 459076310 2.630000e-107 399.0
26 TraesCS7B01G399700 chrUn 100.000 400 0 0 796 1195 478744249 478743850 0.000000e+00 739.0
27 TraesCS7B01G399700 chrUn 88.994 318 21 6 4003 4308 477942858 477943173 9.510000e-102 381.0
28 TraesCS7B01G399700 chr5A 88.356 146 15 2 1961 2105 591607551 591607695 1.730000e-39 174.0
29 TraesCS7B01G399700 chr5A 88.889 126 8 3 1723 1848 591607692 591607811 2.920000e-32 150.0
30 TraesCS7B01G399700 chr5A 92.391 92 7 0 2039 2130 296677841 296677932 1.060000e-26 132.0
31 TraesCS7B01G399700 chr5A 90.141 71 7 0 1961 2031 296677677 296677747 4.990000e-15 93.5
32 TraesCS7B01G399700 chr4D 95.181 83 2 2 4399 4481 12695964 12695884 3.800000e-26 130.0
33 TraesCS7B01G399700 chr4D 92.683 82 6 0 4399 4480 120095615 120095696 8.240000e-23 119.0
34 TraesCS7B01G399700 chr6A 96.000 75 3 0 4399 4473 540151679 540151753 6.370000e-24 122.0
35 TraesCS7B01G399700 chr2D 91.954 87 7 0 4395 4481 620552130 620552216 6.370000e-24 122.0
36 TraesCS7B01G399700 chr1D 92.771 83 4 2 4399 4481 435529343 435529423 8.240000e-23 119.0
37 TraesCS7B01G399700 chr1A 79.137 139 20 8 545 677 20907774 20907639 2.320000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G399700 chr7B 666322088 666326772 4684 False 8652.000000 8652 100.000000 1 4685 1 chr7B.!!$F1 4684
1 TraesCS7B01G399700 chr7B 665676103 665679657 3554 False 1821.333333 2710 95.711333 1 3727 3 chr7B.!!$F3 3726
2 TraesCS7B01G399700 chr7B 666411042 666412762 1720 False 1424.000000 1424 81.761000 1999 3721 1 chr7B.!!$F2 1722
3 TraesCS7B01G399700 chr7B 665557926 665558697 771 True 1094.000000 1094 92.407000 1048 1813 1 chr7B.!!$R1 765
4 TraesCS7B01G399700 chr7B 460278896 460281457 2561 True 710.666667 1007 88.184667 940 4308 3 chr7B.!!$R3 3368
5 TraesCS7B01G399700 chr7B 665688293 665688987 694 False 420.500000 645 88.723500 3563 4373 2 chr7B.!!$F4 810
6 TraesCS7B01G399700 chr7D 590816866 590820039 3173 True 2062.500000 2800 93.048500 920 3926 2 chr7D.!!$R3 3006
7 TraesCS7B01G399700 chr7D 590855007 590856376 1369 False 1227.000000 1227 82.982000 2367 3728 1 chr7D.!!$F1 1361
8 TraesCS7B01G399700 chr5B 93447471 93449121 1650 False 2499.000000 2499 94.004000 2061 3709 1 chr5B.!!$F1 1648
9 TraesCS7B01G399700 chr3B 593544068 593546887 2819 False 1433.000000 2193 88.471500 938 3595 2 chr3B.!!$F2 2657
10 TraesCS7B01G399700 chr3A 459076310 459078873 2563 True 725.000000 1024 88.522333 938 4308 3 chr3A.!!$R1 3370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 651 0.178992 CTTGAACTTGGGTGGGCTGA 60.179 55.000 0.00 0.0 0.00 4.26 F
687 690 0.391228 GCCAACGGGGTCAACATTTT 59.609 50.000 0.00 0.0 39.65 1.82 F
1553 1690 0.970937 GAGATGGTGACCGGACAGGA 60.971 60.000 9.46 0.0 45.00 3.86 F
1644 1783 2.004733 GTGTATAGGTTGGTCAACGCC 58.995 52.381 7.62 0.0 42.02 5.68 F
3087 3562 1.028868 GCAACCTCCCTGCACAGATC 61.029 60.000 0.00 0.0 39.69 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 2194 0.524862 ACGCACTGAACTACCTACGG 59.475 55.0 0.00 0.00 0.00 4.02 R
1920 2230 2.325583 AAAGTGCACTGGAGAAACGA 57.674 45.0 22.49 0.00 0.00 3.85 R
3087 3562 0.033228 CCAGGCATCTTAGCTCTCCG 59.967 60.0 0.00 0.00 34.17 4.63 R
3534 4009 0.543277 TATGCTTCAGGCCTGACAGG 59.457 55.0 35.26 25.89 39.66 4.00 R
4612 5111 0.029167 TGTGAATGTGCAAGTGCGTG 59.971 50.0 0.00 0.00 45.83 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 193 6.646240 CCAATTTAGTTTTGTGATCTGGGTTG 59.354 38.462 0.00 0.00 0.00 3.77
195 196 2.887152 AGTTTTGTGATCTGGGTTGCTC 59.113 45.455 0.00 0.00 0.00 4.26
227 228 7.881775 ATGTAGGGACTTGTCCATATTTTTC 57.118 36.000 19.90 7.01 41.75 2.29
262 264 7.348080 TGTTTCCATGTGTAAAATGTGGTTA 57.652 32.000 0.00 0.00 25.83 2.85
360 363 8.854614 ATGAGGGAAAGCTATTCATATTACAC 57.145 34.615 9.75 0.00 0.00 2.90
458 461 9.743057 TCTATGTTCGTTCAAAACATTTTCAAT 57.257 25.926 6.78 0.00 43.08 2.57
568 571 1.632589 AAATGAGACCAACCAAGGGC 58.367 50.000 0.00 0.00 36.73 5.19
574 577 2.808906 GACCAACCAAGGGCTAATCT 57.191 50.000 0.00 0.00 32.29 2.40
575 578 3.087370 GACCAACCAAGGGCTAATCTT 57.913 47.619 0.00 0.00 32.29 2.40
576 579 3.431415 GACCAACCAAGGGCTAATCTTT 58.569 45.455 0.00 0.00 32.29 2.52
577 580 3.165071 ACCAACCAAGGGCTAATCTTTG 58.835 45.455 0.00 0.00 0.00 2.77
578 581 3.165071 CCAACCAAGGGCTAATCTTTGT 58.835 45.455 0.00 0.00 0.00 2.83
579 582 3.578282 CCAACCAAGGGCTAATCTTTGTT 59.422 43.478 0.00 0.00 32.57 2.83
580 583 4.559153 CAACCAAGGGCTAATCTTTGTTG 58.441 43.478 0.00 0.00 39.63 3.33
581 584 3.165071 ACCAAGGGCTAATCTTTGTTGG 58.835 45.455 0.00 0.00 39.13 3.77
582 585 2.094026 CCAAGGGCTAATCTTTGTTGGC 60.094 50.000 0.00 0.00 35.15 4.52
583 586 2.562298 CAAGGGCTAATCTTTGTTGGCA 59.438 45.455 0.00 0.00 37.32 4.92
584 587 3.105959 AGGGCTAATCTTTGTTGGCAT 57.894 42.857 0.00 0.00 37.32 4.40
585 588 3.444029 AGGGCTAATCTTTGTTGGCATT 58.556 40.909 0.00 0.00 37.32 3.56
586 589 3.840078 AGGGCTAATCTTTGTTGGCATTT 59.160 39.130 0.00 0.00 37.32 2.32
587 590 4.286808 AGGGCTAATCTTTGTTGGCATTTT 59.713 37.500 0.00 0.00 37.32 1.82
588 591 5.003160 GGGCTAATCTTTGTTGGCATTTTT 58.997 37.500 0.00 0.00 37.32 1.94
609 612 2.261671 GGAGAAACTCCGCGAGCA 59.738 61.111 8.23 0.00 41.08 4.26
610 613 2.095252 GGAGAAACTCCGCGAGCAC 61.095 63.158 8.23 0.00 41.08 4.40
611 614 2.048127 AGAAACTCCGCGAGCACC 60.048 61.111 8.23 0.00 32.04 5.01
612 615 3.479269 GAAACTCCGCGAGCACCG 61.479 66.667 8.23 0.00 42.21 4.94
621 624 3.329231 CGAGCACCGCAAGTCAAA 58.671 55.556 0.00 0.00 0.00 2.69
622 625 1.205064 CGAGCACCGCAAGTCAAAG 59.795 57.895 0.00 0.00 0.00 2.77
623 626 1.498865 CGAGCACCGCAAGTCAAAGT 61.499 55.000 0.00 0.00 0.00 2.66
624 627 0.235926 GAGCACCGCAAGTCAAAGTC 59.764 55.000 0.00 0.00 0.00 3.01
625 628 1.082756 GCACCGCAAGTCAAAGTCG 60.083 57.895 0.00 0.00 0.00 4.18
626 629 1.569493 CACCGCAAGTCAAAGTCGG 59.431 57.895 0.00 0.00 45.04 4.79
627 630 1.597027 ACCGCAAGTCAAAGTCGGG 60.597 57.895 4.00 0.00 43.93 5.14
628 631 2.325082 CCGCAAGTCAAAGTCGGGG 61.325 63.158 0.00 0.00 36.73 5.73
629 632 2.954611 GCAAGTCAAAGTCGGGGC 59.045 61.111 0.00 0.00 0.00 5.80
630 633 1.600916 GCAAGTCAAAGTCGGGGCT 60.601 57.895 0.00 0.00 0.00 5.19
631 634 1.172812 GCAAGTCAAAGTCGGGGCTT 61.173 55.000 0.00 0.00 0.00 4.35
632 635 0.593128 CAAGTCAAAGTCGGGGCTTG 59.407 55.000 0.00 0.00 0.00 4.01
633 636 0.472471 AAGTCAAAGTCGGGGCTTGA 59.528 50.000 0.00 0.00 0.00 3.02
634 637 0.472471 AGTCAAAGTCGGGGCTTGAA 59.528 50.000 0.00 0.00 0.00 2.69
635 638 0.591659 GTCAAAGTCGGGGCTTGAAC 59.408 55.000 0.00 0.00 0.00 3.18
636 639 0.472471 TCAAAGTCGGGGCTTGAACT 59.528 50.000 0.00 0.00 0.00 3.01
637 640 1.133915 TCAAAGTCGGGGCTTGAACTT 60.134 47.619 0.00 0.00 0.00 2.66
638 641 1.001378 CAAAGTCGGGGCTTGAACTTG 60.001 52.381 0.00 0.00 0.00 3.16
639 642 0.537371 AAGTCGGGGCTTGAACTTGG 60.537 55.000 0.00 0.00 0.00 3.61
640 643 1.971695 GTCGGGGCTTGAACTTGGG 60.972 63.158 0.00 0.00 0.00 4.12
641 644 2.115266 CGGGGCTTGAACTTGGGT 59.885 61.111 0.00 0.00 0.00 4.51
642 645 2.268076 CGGGGCTTGAACTTGGGTG 61.268 63.158 0.00 0.00 0.00 4.61
643 646 1.908299 GGGGCTTGAACTTGGGTGG 60.908 63.158 0.00 0.00 0.00 4.61
644 647 1.908299 GGGCTTGAACTTGGGTGGG 60.908 63.158 0.00 0.00 0.00 4.61
645 648 2.574018 GGCTTGAACTTGGGTGGGC 61.574 63.158 0.00 0.00 0.00 5.36
646 649 1.531602 GCTTGAACTTGGGTGGGCT 60.532 57.895 0.00 0.00 0.00 5.19
647 650 1.809567 GCTTGAACTTGGGTGGGCTG 61.810 60.000 0.00 0.00 0.00 4.85
648 651 0.178992 CTTGAACTTGGGTGGGCTGA 60.179 55.000 0.00 0.00 0.00 4.26
649 652 0.467290 TTGAACTTGGGTGGGCTGAC 60.467 55.000 0.00 0.00 0.00 3.51
650 653 1.150536 GAACTTGGGTGGGCTGACA 59.849 57.895 0.00 0.00 0.00 3.58
651 654 0.890996 GAACTTGGGTGGGCTGACAG 60.891 60.000 0.00 0.00 0.00 3.51
652 655 2.674380 CTTGGGTGGGCTGACAGC 60.674 66.667 19.55 19.55 41.46 4.40
653 656 3.177884 TTGGGTGGGCTGACAGCT 61.178 61.111 25.92 0.00 41.99 4.24
654 657 1.841302 CTTGGGTGGGCTGACAGCTA 61.841 60.000 25.92 13.36 41.99 3.32
655 658 2.124507 TTGGGTGGGCTGACAGCTAC 62.125 60.000 25.92 22.57 41.99 3.58
656 659 2.269241 GGTGGGCTGACAGCTACC 59.731 66.667 26.95 26.95 41.99 3.18
657 660 2.269241 GTGGGCTGACAGCTACCC 59.731 66.667 25.92 18.90 41.99 3.69
658 661 3.009115 TGGGCTGACAGCTACCCC 61.009 66.667 25.92 18.56 41.99 4.95
659 662 3.009115 GGGCTGACAGCTACCCCA 61.009 66.667 25.92 0.00 41.99 4.96
660 663 2.586792 GGCTGACAGCTACCCCAG 59.413 66.667 25.92 0.00 41.99 4.45
677 680 2.203209 GCTATCCAGCCAACGGGG 60.203 66.667 0.00 0.00 42.37 5.73
679 682 1.146263 CTATCCAGCCAACGGGGTC 59.854 63.158 0.00 0.00 44.97 4.46
680 683 1.613928 TATCCAGCCAACGGGGTCA 60.614 57.895 0.00 0.00 44.97 4.02
681 684 1.202099 TATCCAGCCAACGGGGTCAA 61.202 55.000 0.00 0.00 44.97 3.18
682 685 2.764637 ATCCAGCCAACGGGGTCAAC 62.765 60.000 0.00 0.00 44.97 3.18
683 686 2.203280 CAGCCAACGGGGTCAACA 60.203 61.111 0.00 0.00 44.97 3.33
684 687 1.603455 CAGCCAACGGGGTCAACAT 60.603 57.895 0.00 0.00 44.97 2.71
685 688 1.152830 AGCCAACGGGGTCAACATT 59.847 52.632 0.00 0.00 42.56 2.71
686 689 0.469144 AGCCAACGGGGTCAACATTT 60.469 50.000 0.00 0.00 42.56 2.32
687 690 0.391228 GCCAACGGGGTCAACATTTT 59.609 50.000 0.00 0.00 39.65 1.82
688 691 1.202592 GCCAACGGGGTCAACATTTTT 60.203 47.619 0.00 0.00 39.65 1.94
770 773 3.553508 CCCAACAATCTGGAGTGCTTTTG 60.554 47.826 0.00 0.00 38.96 2.44
783 786 1.112459 GCTTTTGCTCGTTGTTGACG 58.888 50.000 0.00 0.00 44.15 4.35
1195 1205 4.415332 CCGACGTCCAGACCACCG 62.415 72.222 10.58 0.00 0.00 4.94
1553 1690 0.970937 GAGATGGTGACCGGACAGGA 60.971 60.000 9.46 0.00 45.00 3.86
1555 1692 2.240162 GATGGTGACCGGACAGGACC 62.240 65.000 9.46 6.80 45.00 4.46
1644 1783 2.004733 GTGTATAGGTTGGTCAACGCC 58.995 52.381 7.62 0.00 42.02 5.68
1694 1833 4.180946 CCGGAGCTCAGACGTCGG 62.181 72.222 17.19 14.01 0.00 4.79
1849 2159 9.476202 GACAAGATTTTTAGCCAAAACAGTTAT 57.524 29.630 0.00 0.00 37.18 1.89
1858 2168 9.823647 TTTAGCCAAAACAGTTATTTGAATCAA 57.176 25.926 0.00 0.00 39.56 2.57
1860 2170 8.538409 AGCCAAAACAGTTATTTGAATCAATC 57.462 30.769 0.00 0.00 39.56 2.67
1861 2171 7.603784 AGCCAAAACAGTTATTTGAATCAATCC 59.396 33.333 0.00 0.00 39.56 3.01
1863 2173 8.711457 CCAAAACAGTTATTTGAATCAATCCAC 58.289 33.333 0.00 0.00 39.56 4.02
1864 2174 9.480053 CAAAACAGTTATTTGAATCAATCCACT 57.520 29.630 0.00 0.00 39.56 4.00
1866 2176 9.696917 AAACAGTTATTTGAATCAATCCACTTC 57.303 29.630 0.00 0.00 0.00 3.01
1868 2178 8.734386 ACAGTTATTTGAATCAATCCACTTCTC 58.266 33.333 0.00 0.00 0.00 2.87
1877 2187 9.605275 TGAATCAATCCACTTCTCTATTTACTG 57.395 33.333 0.00 0.00 0.00 2.74
1878 2188 9.823647 GAATCAATCCACTTCTCTATTTACTGA 57.176 33.333 0.00 0.00 0.00 3.41
1879 2189 9.606631 AATCAATCCACTTCTCTATTTACTGAC 57.393 33.333 0.00 0.00 0.00 3.51
1881 2191 8.593679 TCAATCCACTTCTCTATTTACTGACAA 58.406 33.333 0.00 0.00 0.00 3.18
1884 2194 8.603242 TCCACTTCTCTATTTACTGACAAAAC 57.397 34.615 0.00 0.00 0.00 2.43
1886 2196 7.360101 CCACTTCTCTATTTACTGACAAAACCG 60.360 40.741 0.00 0.00 0.00 4.44
1888 2198 8.362639 ACTTCTCTATTTACTGACAAAACCGTA 58.637 33.333 0.00 0.00 0.00 4.02
1889 2199 8.752766 TTCTCTATTTACTGACAAAACCGTAG 57.247 34.615 0.00 0.00 0.00 3.51
1905 2215 3.476295 CGTAGGTAGTTCAGTGCGTTA 57.524 47.619 0.00 0.00 0.00 3.18
1906 2216 4.025015 CGTAGGTAGTTCAGTGCGTTAT 57.975 45.455 0.00 0.00 0.00 1.89
1907 2217 4.418392 CGTAGGTAGTTCAGTGCGTTATT 58.582 43.478 0.00 0.00 0.00 1.40
1910 2220 7.355017 CGTAGGTAGTTCAGTGCGTTATTATA 58.645 38.462 0.00 0.00 0.00 0.98
1911 2221 7.322222 CGTAGGTAGTTCAGTGCGTTATTATAC 59.678 40.741 0.00 0.00 0.00 1.47
1913 2223 7.424001 AGGTAGTTCAGTGCGTTATTATACTC 58.576 38.462 0.00 0.00 0.00 2.59
1916 2226 7.700322 AGTTCAGTGCGTTATTATACTCATG 57.300 36.000 0.00 0.00 0.00 3.07
1917 2227 7.489160 AGTTCAGTGCGTTATTATACTCATGA 58.511 34.615 0.00 0.00 0.00 3.07
1918 2228 7.979537 AGTTCAGTGCGTTATTATACTCATGAA 59.020 33.333 0.00 0.00 0.00 2.57
1919 2229 8.600625 GTTCAGTGCGTTATTATACTCATGAAA 58.399 33.333 0.00 0.00 0.00 2.69
1920 2230 8.887036 TCAGTGCGTTATTATACTCATGAAAT 57.113 30.769 0.00 0.00 0.00 2.17
1921 2231 8.978539 TCAGTGCGTTATTATACTCATGAAATC 58.021 33.333 0.00 0.00 0.00 2.17
1922 2232 7.946768 CAGTGCGTTATTATACTCATGAAATCG 59.053 37.037 0.00 0.00 0.00 3.34
1925 2277 8.822855 TGCGTTATTATACTCATGAAATCGTTT 58.177 29.630 0.00 0.00 0.00 3.60
1933 2285 4.692625 ACTCATGAAATCGTTTCTCCAGTG 59.307 41.667 0.00 0.00 40.32 3.66
1934 2286 3.436704 TCATGAAATCGTTTCTCCAGTGC 59.563 43.478 0.00 0.00 40.32 4.40
1936 2288 2.548057 TGAAATCGTTTCTCCAGTGCAC 59.452 45.455 9.40 9.40 40.32 4.57
2031 2480 6.222038 TCCTCTTGGTTGAGATACATGTAC 57.778 41.667 7.96 2.64 36.23 2.90
2032 2481 5.719563 TCCTCTTGGTTGAGATACATGTACA 59.280 40.000 7.96 0.00 36.23 2.90
2033 2482 6.384015 TCCTCTTGGTTGAGATACATGTACAT 59.616 38.462 7.96 1.41 36.23 2.29
2034 2483 7.563556 TCCTCTTGGTTGAGATACATGTACATA 59.436 37.037 7.96 0.00 36.23 2.29
2035 2484 8.370940 CCTCTTGGTTGAGATACATGTACATAT 58.629 37.037 7.96 0.00 36.23 1.78
2036 2485 9.770097 CTCTTGGTTGAGATACATGTACATATT 57.230 33.333 7.96 1.08 36.23 1.28
2059 2524 3.784178 ACTCTCTGACTCATTTCCCTCA 58.216 45.455 0.00 0.00 0.00 3.86
2458 2925 4.074970 CACAAATTCAGAGCTACAAGGGT 58.925 43.478 0.00 0.00 0.00 4.34
3072 3547 2.191128 AGGGAACAGATGTCAGCAAC 57.809 50.000 0.00 0.00 0.00 4.17
3087 3562 1.028868 GCAACCTCCCTGCACAGATC 61.029 60.000 0.00 0.00 39.69 2.75
3150 3625 1.187087 AGGTGAAAGAGCTACCTCCG 58.813 55.000 0.00 0.00 40.73 4.63
3300 3775 7.095910 CGGATATCATTCAAGAGCTCAGTAAT 58.904 38.462 17.77 8.91 0.00 1.89
3346 3821 7.147983 TGGAATTATTTTGTAATGTTCCTCGGG 60.148 37.037 13.29 0.00 38.88 5.14
3564 4039 3.999001 GCCTGAAGCATATGATCATCGAA 59.001 43.478 12.53 0.00 42.97 3.71
3591 4066 2.795973 CATGATGTGGGTGCTGCG 59.204 61.111 0.00 0.00 0.00 5.18
3659 4134 7.041303 CCCTAATTGTCAAGTGATCATCATGAG 60.041 40.741 0.00 0.00 0.00 2.90
3674 4149 9.491675 GATCATCATGAGTGTTGATAAGAAGAT 57.508 33.333 9.06 0.00 42.16 2.40
3679 4154 4.081697 TGAGTGTTGATAAGAAGATCGGCA 60.082 41.667 0.00 0.00 0.00 5.69
3702 4185 1.251251 AGAGTTTGGAGCATTGTGCC 58.749 50.000 0.00 0.00 46.52 5.01
3717 4200 0.179000 GTGCCCATCTGATTCCGAGT 59.821 55.000 0.00 0.00 0.00 4.18
3741 4224 1.136891 CATGAGCGGTGTCCAGATGTA 59.863 52.381 0.00 0.00 0.00 2.29
3754 4237 7.015292 GGTGTCCAGATGTAATATACCTTCTGA 59.985 40.741 14.27 4.00 38.87 3.27
3767 4250 1.135915 CCTTCTGATGGAGACGGTCAG 59.864 57.143 11.27 0.00 43.27 3.51
3768 4251 1.135915 CTTCTGATGGAGACGGTCAGG 59.864 57.143 11.27 0.00 42.59 3.86
3784 4267 2.767960 GTCAGGGGGCATTTGATGATTT 59.232 45.455 0.00 0.00 0.00 2.17
3803 4286 9.346725 GATGATTTATTTCAACACACTTCCTTC 57.653 33.333 0.00 0.00 0.00 3.46
3813 4296 2.869801 CACACTTCCTTCAACAGCGTTA 59.130 45.455 0.00 0.00 0.00 3.18
3815 4298 4.024048 CACACTTCCTTCAACAGCGTTATT 60.024 41.667 0.00 0.00 0.00 1.40
3816 4299 5.178623 CACACTTCCTTCAACAGCGTTATTA 59.821 40.000 0.00 0.00 0.00 0.98
3825 4308 7.754924 CCTTCAACAGCGTTATTATGATTTGTT 59.245 33.333 0.00 0.00 0.00 2.83
3866 4351 1.668826 TGATGCCCCTAGAACTTGGT 58.331 50.000 0.00 0.00 0.00 3.67
3930 4416 2.062971 ACTTGCTTCTATGCCCATGG 57.937 50.000 4.14 4.14 0.00 3.66
3931 4417 1.565759 ACTTGCTTCTATGCCCATGGA 59.434 47.619 15.22 0.00 0.00 3.41
3935 4421 1.747206 GCTTCTATGCCCATGGACGTT 60.747 52.381 15.22 0.00 0.00 3.99
3946 4432 1.127951 CATGGACGTTAAGCCGTGAAC 59.872 52.381 7.31 0.00 42.50 3.18
3976 4462 8.973378 GCATTGTGTTTTACAGTAATTGCTAAA 58.027 29.630 0.00 0.00 41.10 1.85
4061 4547 3.560025 GGCCCTATATGGAGTTCATGTGG 60.560 52.174 0.00 0.00 38.35 4.17
4087 4580 9.180678 GATACCTTTGTTTTGTAAATGACTGTG 57.819 33.333 0.00 0.00 0.00 3.66
4158 4651 4.882671 ACATGGATTTCACGTGAATAGC 57.117 40.909 30.10 21.65 33.54 2.97
4167 4660 8.774586 GGATTTCACGTGAATAGCTTTGTATAT 58.225 33.333 30.10 16.20 33.54 0.86
4275 4774 6.588719 TCACAAAGAAGGATTTAACATGGG 57.411 37.500 0.00 0.00 0.00 4.00
4279 4778 6.328934 ACAAAGAAGGATTTAACATGGGGTTT 59.671 34.615 0.00 0.00 40.96 3.27
4318 4817 7.994425 TTGCTAATTTCTATCAGTTCACCAA 57.006 32.000 0.00 0.00 0.00 3.67
4322 4821 9.294030 GCTAATTTCTATCAGTTCACCAAAATG 57.706 33.333 0.00 0.00 34.27 2.32
4424 4923 9.974980 ATTTTTATTATTTCTGGTGTTCGTTGT 57.025 25.926 0.00 0.00 0.00 3.32
4426 4925 9.881529 TTTTATTATTTCTGGTGTTCGTTGTAC 57.118 29.630 0.00 0.00 0.00 2.90
4427 4926 8.836268 TTATTATTTCTGGTGTTCGTTGTACT 57.164 30.769 0.00 0.00 0.00 2.73
4428 4927 6.533819 TTATTTCTGGTGTTCGTTGTACTG 57.466 37.500 0.00 0.00 0.00 2.74
4429 4928 1.860676 TCTGGTGTTCGTTGTACTGC 58.139 50.000 0.00 0.00 0.00 4.40
4430 4929 0.865769 CTGGTGTTCGTTGTACTGCC 59.134 55.000 0.00 0.00 0.00 4.85
4431 4930 0.876777 TGGTGTTCGTTGTACTGCCG 60.877 55.000 0.00 0.00 0.00 5.69
4432 4931 0.877213 GGTGTTCGTTGTACTGCCGT 60.877 55.000 0.00 0.00 0.00 5.68
4433 4932 0.231279 GTGTTCGTTGTACTGCCGTG 59.769 55.000 0.00 0.00 0.00 4.94
4434 4933 0.102663 TGTTCGTTGTACTGCCGTGA 59.897 50.000 0.00 0.00 0.00 4.35
4435 4934 1.269883 TGTTCGTTGTACTGCCGTGAT 60.270 47.619 0.00 0.00 0.00 3.06
4436 4935 1.796459 GTTCGTTGTACTGCCGTGATT 59.204 47.619 0.00 0.00 0.00 2.57
4437 4936 1.424403 TCGTTGTACTGCCGTGATTG 58.576 50.000 0.00 0.00 0.00 2.67
4438 4937 1.000052 TCGTTGTACTGCCGTGATTGA 60.000 47.619 0.00 0.00 0.00 2.57
4439 4938 1.795872 CGTTGTACTGCCGTGATTGAA 59.204 47.619 0.00 0.00 0.00 2.69
4440 4939 2.159841 CGTTGTACTGCCGTGATTGAAG 60.160 50.000 0.00 0.00 0.00 3.02
4441 4940 3.064207 GTTGTACTGCCGTGATTGAAGA 58.936 45.455 0.00 0.00 0.00 2.87
4442 4941 2.683968 TGTACTGCCGTGATTGAAGAC 58.316 47.619 0.00 0.00 0.00 3.01
4443 4942 1.654105 GTACTGCCGTGATTGAAGACG 59.346 52.381 0.00 0.00 35.31 4.18
4444 4943 0.317160 ACTGCCGTGATTGAAGACGA 59.683 50.000 0.00 0.00 37.81 4.20
4445 4944 1.270094 ACTGCCGTGATTGAAGACGAA 60.270 47.619 0.00 0.00 37.81 3.85
4446 4945 2.002586 CTGCCGTGATTGAAGACGAAT 58.997 47.619 0.00 0.00 37.81 3.34
4447 4946 3.186909 CTGCCGTGATTGAAGACGAATA 58.813 45.455 0.00 0.00 37.81 1.75
4448 4947 3.186909 TGCCGTGATTGAAGACGAATAG 58.813 45.455 0.00 0.00 37.81 1.73
4449 4948 3.119280 TGCCGTGATTGAAGACGAATAGA 60.119 43.478 0.00 0.00 37.81 1.98
4450 4949 4.051922 GCCGTGATTGAAGACGAATAGAT 58.948 43.478 0.00 0.00 37.81 1.98
4451 4950 4.508124 GCCGTGATTGAAGACGAATAGATT 59.492 41.667 0.00 0.00 37.81 2.40
4452 4951 5.557136 GCCGTGATTGAAGACGAATAGATTG 60.557 44.000 0.00 0.00 37.81 2.67
4453 4952 5.050769 CCGTGATTGAAGACGAATAGATTGG 60.051 44.000 0.00 0.00 37.81 3.16
4454 4953 5.748630 CGTGATTGAAGACGAATAGATTGGA 59.251 40.000 0.00 0.00 37.81 3.53
4455 4954 6.255670 CGTGATTGAAGACGAATAGATTGGAA 59.744 38.462 0.00 0.00 37.81 3.53
4456 4955 7.515841 CGTGATTGAAGACGAATAGATTGGAAG 60.516 40.741 0.00 0.00 37.81 3.46
4457 4956 7.278868 GTGATTGAAGACGAATAGATTGGAAGT 59.721 37.037 0.00 0.00 0.00 3.01
4458 4957 7.824289 TGATTGAAGACGAATAGATTGGAAGTT 59.176 33.333 0.00 0.00 0.00 2.66
4459 4958 7.979444 TTGAAGACGAATAGATTGGAAGTTT 57.021 32.000 0.00 0.00 0.00 2.66
4460 4959 7.979444 TGAAGACGAATAGATTGGAAGTTTT 57.021 32.000 0.00 0.00 0.00 2.43
4461 4960 8.029642 TGAAGACGAATAGATTGGAAGTTTTC 57.970 34.615 0.00 0.00 0.00 2.29
4462 4961 7.878127 TGAAGACGAATAGATTGGAAGTTTTCT 59.122 33.333 0.00 0.00 0.00 2.52
4463 4962 7.835634 AGACGAATAGATTGGAAGTTTTCTC 57.164 36.000 0.00 0.00 0.00 2.87
4464 4963 6.531948 AGACGAATAGATTGGAAGTTTTCTCG 59.468 38.462 0.00 0.00 0.00 4.04
4465 4964 5.063564 ACGAATAGATTGGAAGTTTTCTCGC 59.936 40.000 0.00 0.00 0.00 5.03
4466 4965 5.063438 CGAATAGATTGGAAGTTTTCTCGCA 59.937 40.000 0.00 0.00 0.00 5.10
4467 4966 6.402118 CGAATAGATTGGAAGTTTTCTCGCAA 60.402 38.462 0.00 0.00 0.00 4.85
4468 4967 6.817765 ATAGATTGGAAGTTTTCTCGCAAA 57.182 33.333 0.00 0.00 0.00 3.68
4469 4968 5.514274 AGATTGGAAGTTTTCTCGCAAAA 57.486 34.783 0.00 0.00 0.00 2.44
4470 4969 5.901552 AGATTGGAAGTTTTCTCGCAAAAA 58.098 33.333 0.00 0.00 0.00 1.94
4615 5114 4.866508 TTATCCATCTAGTAAGCCCACG 57.133 45.455 0.00 0.00 0.00 4.94
4616 5115 0.750850 TCCATCTAGTAAGCCCACGC 59.249 55.000 0.00 0.00 0.00 5.34
4617 5116 0.464036 CCATCTAGTAAGCCCACGCA 59.536 55.000 0.00 0.00 37.52 5.24
4618 5117 1.571919 CATCTAGTAAGCCCACGCAC 58.428 55.000 0.00 0.00 37.52 5.34
4619 5118 1.137086 CATCTAGTAAGCCCACGCACT 59.863 52.381 0.00 0.00 37.52 4.40
4620 5119 1.263356 TCTAGTAAGCCCACGCACTT 58.737 50.000 0.00 0.00 37.52 3.16
4621 5120 1.067142 TCTAGTAAGCCCACGCACTTG 60.067 52.381 0.00 0.00 37.52 3.16
4622 5121 0.672401 TAGTAAGCCCACGCACTTGC 60.672 55.000 0.00 0.00 37.52 4.01
4623 5122 2.112087 TAAGCCCACGCACTTGCA 59.888 55.556 1.48 0.00 42.21 4.08
4624 5123 2.258013 TAAGCCCACGCACTTGCAC 61.258 57.895 1.48 0.00 42.21 4.57
4625 5124 2.949705 TAAGCCCACGCACTTGCACA 62.950 55.000 1.48 0.00 42.21 4.57
4626 5125 3.673484 GCCCACGCACTTGCACAT 61.673 61.111 1.48 0.00 42.21 3.21
4627 5126 3.041701 CCCACGCACTTGCACATT 58.958 55.556 1.48 0.00 42.21 2.71
4628 5127 1.081242 CCCACGCACTTGCACATTC 60.081 57.895 1.48 0.00 42.21 2.67
4629 5128 1.653667 CCACGCACTTGCACATTCA 59.346 52.632 1.48 0.00 42.21 2.57
4630 5129 0.661187 CCACGCACTTGCACATTCAC 60.661 55.000 1.48 0.00 42.21 3.18
4631 5130 0.029167 CACGCACTTGCACATTCACA 59.971 50.000 1.48 0.00 42.21 3.58
4632 5131 0.953727 ACGCACTTGCACATTCACAT 59.046 45.000 1.48 0.00 42.21 3.21
4633 5132 2.095819 CACGCACTTGCACATTCACATA 60.096 45.455 1.48 0.00 42.21 2.29
4634 5133 2.749076 ACGCACTTGCACATTCACATAT 59.251 40.909 1.48 0.00 42.21 1.78
4635 5134 3.103007 CGCACTTGCACATTCACATATG 58.897 45.455 0.00 0.00 42.21 1.78
4636 5135 3.426560 CGCACTTGCACATTCACATATGT 60.427 43.478 1.41 1.41 42.21 2.29
4637 5136 4.100529 GCACTTGCACATTCACATATGTC 58.899 43.478 5.07 0.00 36.64 3.06
4638 5137 4.379708 GCACTTGCACATTCACATATGTCA 60.380 41.667 5.07 0.00 36.64 3.58
4639 5138 5.677852 GCACTTGCACATTCACATATGTCAT 60.678 40.000 5.07 0.00 36.64 3.06
4640 5139 5.741982 CACTTGCACATTCACATATGTCATG 59.258 40.000 17.64 17.64 36.64 3.07
4641 5140 5.416639 ACTTGCACATTCACATATGTCATGT 59.583 36.000 18.62 18.62 36.64 3.21
4642 5141 6.598850 ACTTGCACATTCACATATGTCATGTA 59.401 34.615 21.83 10.88 36.64 2.29
4643 5142 6.998968 TGCACATTCACATATGTCATGTAA 57.001 33.333 21.83 14.34 36.64 2.41
4644 5143 7.571080 TGCACATTCACATATGTCATGTAAT 57.429 32.000 21.83 9.27 36.64 1.89
4646 5145 6.361481 GCACATTCACATATGTCATGTAATGC 59.639 38.462 21.83 18.54 46.21 3.56
4647 5146 6.859508 CACATTCACATATGTCATGTAATGCC 59.140 38.462 21.83 0.00 46.21 4.40
4648 5147 6.774170 ACATTCACATATGTCATGTAATGCCT 59.226 34.615 21.29 3.39 46.21 4.75
4649 5148 7.938490 ACATTCACATATGTCATGTAATGCCTA 59.062 33.333 21.29 0.00 46.21 3.93
4650 5149 7.967890 TTCACATATGTCATGTAATGCCTAG 57.032 36.000 5.07 0.00 46.21 3.02
4651 5150 6.466812 TCACATATGTCATGTAATGCCTAGG 58.533 40.000 5.07 3.67 46.21 3.02
4652 5151 6.043127 TCACATATGTCATGTAATGCCTAGGT 59.957 38.462 11.31 0.00 46.21 3.08
4653 5152 6.712095 CACATATGTCATGTAATGCCTAGGTT 59.288 38.462 11.31 0.00 46.21 3.50
4654 5153 6.936900 ACATATGTCATGTAATGCCTAGGTTC 59.063 38.462 11.31 0.00 46.21 3.62
4655 5154 4.150897 TGTCATGTAATGCCTAGGTTCC 57.849 45.455 11.31 0.00 46.21 3.62
4656 5155 3.118038 TGTCATGTAATGCCTAGGTTCCC 60.118 47.826 11.31 0.00 46.21 3.97
4657 5156 3.118038 GTCATGTAATGCCTAGGTTCCCA 60.118 47.826 11.31 0.00 46.21 4.37
4658 5157 3.136443 TCATGTAATGCCTAGGTTCCCAG 59.864 47.826 11.31 0.00 46.21 4.45
4659 5158 1.211949 TGTAATGCCTAGGTTCCCAGC 59.788 52.381 11.31 0.00 0.00 4.85
4660 5159 0.843984 TAATGCCTAGGTTCCCAGCC 59.156 55.000 11.31 0.00 0.00 4.85
4661 5160 0.921256 AATGCCTAGGTTCCCAGCCT 60.921 55.000 11.31 0.00 40.00 4.58
4662 5161 1.639635 ATGCCTAGGTTCCCAGCCTG 61.640 60.000 11.31 0.00 37.54 4.85
4663 5162 2.592308 CCTAGGTTCCCAGCCTGC 59.408 66.667 0.00 0.00 37.54 4.85
4664 5163 2.300967 CCTAGGTTCCCAGCCTGCA 61.301 63.158 0.00 0.00 37.54 4.41
4665 5164 1.639635 CCTAGGTTCCCAGCCTGCAT 61.640 60.000 0.00 0.00 37.54 3.96
4666 5165 1.131638 CTAGGTTCCCAGCCTGCATA 58.868 55.000 0.00 0.00 37.54 3.14
4667 5166 1.701847 CTAGGTTCCCAGCCTGCATAT 59.298 52.381 0.00 0.00 37.54 1.78
4668 5167 0.929244 AGGTTCCCAGCCTGCATATT 59.071 50.000 0.00 0.00 34.56 1.28
4669 5168 1.133668 AGGTTCCCAGCCTGCATATTC 60.134 52.381 0.00 0.00 34.56 1.75
4670 5169 1.133668 GGTTCCCAGCCTGCATATTCT 60.134 52.381 0.00 0.00 0.00 2.40
4671 5170 1.952296 GTTCCCAGCCTGCATATTCTG 59.048 52.381 0.00 0.00 0.00 3.02
4672 5171 0.475475 TCCCAGCCTGCATATTCTGG 59.525 55.000 13.55 13.55 44.25 3.86
4673 5172 0.184451 CCCAGCCTGCATATTCTGGT 59.816 55.000 17.04 0.00 43.38 4.00
4674 5173 1.602311 CCAGCCTGCATATTCTGGTC 58.398 55.000 12.72 0.00 40.79 4.02
4675 5174 1.224075 CAGCCTGCATATTCTGGTCG 58.776 55.000 0.63 0.00 0.00 4.79
4676 5175 1.123077 AGCCTGCATATTCTGGTCGA 58.877 50.000 0.63 0.00 0.00 4.20
4677 5176 1.486310 AGCCTGCATATTCTGGTCGAA 59.514 47.619 0.63 0.00 35.78 3.71
4678 5177 1.869767 GCCTGCATATTCTGGTCGAAG 59.130 52.381 0.63 0.00 34.56 3.79
4679 5178 2.487934 CCTGCATATTCTGGTCGAAGG 58.512 52.381 0.00 0.00 34.56 3.46
4680 5179 2.487934 CTGCATATTCTGGTCGAAGGG 58.512 52.381 0.00 0.00 34.56 3.95
4681 5180 1.230324 GCATATTCTGGTCGAAGGGC 58.770 55.000 0.00 0.00 34.56 5.19
4682 5181 1.502231 CATATTCTGGTCGAAGGGCG 58.498 55.000 0.00 0.00 42.69 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 193 2.168728 AGTCCCTACATTTTCGGAGAGC 59.831 50.000 0.00 0.00 38.43 4.09
195 196 3.933332 GACAAGTCCCTACATTTTCGGAG 59.067 47.826 0.00 0.00 0.00 4.63
273 275 6.374417 ACCCGGAATGCATTAGATATTACT 57.626 37.500 12.97 0.00 0.00 2.24
416 419 9.449719 ACGAACATAGAGAAAATGTTAGGAATT 57.550 29.630 11.80 0.00 45.24 2.17
417 420 9.449719 AACGAACATAGAGAAAATGTTAGGAAT 57.550 29.630 11.80 0.00 45.24 3.01
418 421 8.842358 AACGAACATAGAGAAAATGTTAGGAA 57.158 30.769 11.80 0.00 45.24 3.36
419 422 8.092068 TGAACGAACATAGAGAAAATGTTAGGA 58.908 33.333 11.80 0.00 45.24 2.94
547 550 2.368548 GCCCTTGGTTGGTCTCATTTTT 59.631 45.455 0.00 0.00 0.00 1.94
548 551 1.970640 GCCCTTGGTTGGTCTCATTTT 59.029 47.619 0.00 0.00 0.00 1.82
549 552 1.147817 AGCCCTTGGTTGGTCTCATTT 59.852 47.619 0.00 0.00 0.00 2.32
550 553 0.779997 AGCCCTTGGTTGGTCTCATT 59.220 50.000 0.00 0.00 0.00 2.57
551 554 1.668826 TAGCCCTTGGTTGGTCTCAT 58.331 50.000 0.00 0.00 0.00 2.90
552 555 1.440618 TTAGCCCTTGGTTGGTCTCA 58.559 50.000 0.00 0.00 0.00 3.27
553 556 2.239907 AGATTAGCCCTTGGTTGGTCTC 59.760 50.000 0.00 0.00 0.00 3.36
554 557 2.279173 AGATTAGCCCTTGGTTGGTCT 58.721 47.619 0.00 0.00 0.00 3.85
555 558 2.808906 AGATTAGCCCTTGGTTGGTC 57.191 50.000 0.00 0.00 0.00 4.02
556 559 3.165071 CAAAGATTAGCCCTTGGTTGGT 58.835 45.455 0.00 0.00 0.00 3.67
557 560 3.165071 ACAAAGATTAGCCCTTGGTTGG 58.835 45.455 0.00 0.00 0.00 3.77
558 561 4.559153 CAACAAAGATTAGCCCTTGGTTG 58.441 43.478 8.25 8.25 44.34 3.77
559 562 3.578282 CCAACAAAGATTAGCCCTTGGTT 59.422 43.478 0.00 0.00 38.06 3.67
560 563 3.165071 CCAACAAAGATTAGCCCTTGGT 58.835 45.455 0.00 0.00 29.44 3.67
561 564 2.094026 GCCAACAAAGATTAGCCCTTGG 60.094 50.000 0.00 0.00 0.00 3.61
562 565 2.562298 TGCCAACAAAGATTAGCCCTTG 59.438 45.455 0.00 0.00 0.00 3.61
563 566 2.888212 TGCCAACAAAGATTAGCCCTT 58.112 42.857 0.00 0.00 0.00 3.95
564 567 2.603075 TGCCAACAAAGATTAGCCCT 57.397 45.000 0.00 0.00 0.00 5.19
565 568 3.893326 AATGCCAACAAAGATTAGCCC 57.107 42.857 0.00 0.00 0.00 5.19
592 595 2.095252 GTGCTCGCGGAGTTTCTCC 61.095 63.158 6.13 5.79 46.44 3.71
593 596 2.095252 GGTGCTCGCGGAGTTTCTC 61.095 63.158 6.13 0.00 31.39 2.87
594 597 2.048127 GGTGCTCGCGGAGTTTCT 60.048 61.111 6.13 0.00 31.39 2.52
595 598 3.479269 CGGTGCTCGCGGAGTTTC 61.479 66.667 6.13 0.00 31.39 2.78
604 607 1.205064 CTTTGACTTGCGGTGCTCG 59.795 57.895 0.00 0.00 42.76 5.03
605 608 0.235926 GACTTTGACTTGCGGTGCTC 59.764 55.000 0.00 0.00 0.00 4.26
606 609 1.498865 CGACTTTGACTTGCGGTGCT 61.499 55.000 0.00 0.00 0.00 4.40
607 610 1.082756 CGACTTTGACTTGCGGTGC 60.083 57.895 0.00 0.00 0.00 5.01
608 611 1.569493 CCGACTTTGACTTGCGGTG 59.431 57.895 0.00 0.00 37.35 4.94
609 612 1.597027 CCCGACTTTGACTTGCGGT 60.597 57.895 0.00 0.00 40.33 5.68
610 613 2.325082 CCCCGACTTTGACTTGCGG 61.325 63.158 0.00 0.00 41.53 5.69
611 614 2.966309 GCCCCGACTTTGACTTGCG 61.966 63.158 0.00 0.00 0.00 4.85
612 615 1.172812 AAGCCCCGACTTTGACTTGC 61.173 55.000 0.00 0.00 0.00 4.01
613 616 0.593128 CAAGCCCCGACTTTGACTTG 59.407 55.000 0.00 0.00 0.00 3.16
614 617 0.472471 TCAAGCCCCGACTTTGACTT 59.528 50.000 0.00 0.00 0.00 3.01
615 618 0.472471 TTCAAGCCCCGACTTTGACT 59.528 50.000 0.00 0.00 0.00 3.41
616 619 0.591659 GTTCAAGCCCCGACTTTGAC 59.408 55.000 0.00 0.00 0.00 3.18
617 620 0.472471 AGTTCAAGCCCCGACTTTGA 59.528 50.000 0.00 0.00 0.00 2.69
618 621 1.001378 CAAGTTCAAGCCCCGACTTTG 60.001 52.381 0.00 0.00 30.41 2.77
619 622 1.318576 CAAGTTCAAGCCCCGACTTT 58.681 50.000 0.00 0.00 30.41 2.66
620 623 0.537371 CCAAGTTCAAGCCCCGACTT 60.537 55.000 0.00 0.00 32.89 3.01
621 624 1.073199 CCAAGTTCAAGCCCCGACT 59.927 57.895 0.00 0.00 0.00 4.18
622 625 1.971695 CCCAAGTTCAAGCCCCGAC 60.972 63.158 0.00 0.00 0.00 4.79
623 626 2.434331 CCCAAGTTCAAGCCCCGA 59.566 61.111 0.00 0.00 0.00 5.14
624 627 2.115266 ACCCAAGTTCAAGCCCCG 59.885 61.111 0.00 0.00 0.00 5.73
625 628 1.908299 CCACCCAAGTTCAAGCCCC 60.908 63.158 0.00 0.00 0.00 5.80
626 629 1.908299 CCCACCCAAGTTCAAGCCC 60.908 63.158 0.00 0.00 0.00 5.19
627 630 2.574018 GCCCACCCAAGTTCAAGCC 61.574 63.158 0.00 0.00 0.00 4.35
628 631 1.531602 AGCCCACCCAAGTTCAAGC 60.532 57.895 0.00 0.00 0.00 4.01
629 632 0.178992 TCAGCCCACCCAAGTTCAAG 60.179 55.000 0.00 0.00 0.00 3.02
630 633 0.467290 GTCAGCCCACCCAAGTTCAA 60.467 55.000 0.00 0.00 0.00 2.69
631 634 1.150536 GTCAGCCCACCCAAGTTCA 59.849 57.895 0.00 0.00 0.00 3.18
632 635 0.890996 CTGTCAGCCCACCCAAGTTC 60.891 60.000 0.00 0.00 0.00 3.01
633 636 1.151450 CTGTCAGCCCACCCAAGTT 59.849 57.895 0.00 0.00 0.00 2.66
634 637 2.839098 CTGTCAGCCCACCCAAGT 59.161 61.111 0.00 0.00 0.00 3.16
635 638 1.841302 TAGCTGTCAGCCCACCCAAG 61.841 60.000 21.32 0.00 43.77 3.61
636 639 1.845664 TAGCTGTCAGCCCACCCAA 60.846 57.895 21.32 0.00 43.77 4.12
637 640 2.203922 TAGCTGTCAGCCCACCCA 60.204 61.111 21.32 0.00 43.77 4.51
638 641 2.269241 GTAGCTGTCAGCCCACCC 59.731 66.667 21.32 1.42 43.77 4.61
639 642 2.269241 GGTAGCTGTCAGCCCACC 59.731 66.667 23.44 23.44 43.77 4.61
640 643 2.269241 GGGTAGCTGTCAGCCCAC 59.731 66.667 21.32 18.04 43.77 4.61
643 646 2.586792 CTGGGGTAGCTGTCAGCC 59.413 66.667 21.32 6.87 43.77 4.85
661 664 1.146263 GACCCCGTTGGCTGGATAG 59.854 63.158 0.00 0.00 37.83 2.08
662 665 1.202099 TTGACCCCGTTGGCTGGATA 61.202 55.000 0.00 0.00 37.83 2.59
663 666 2.534396 TTGACCCCGTTGGCTGGAT 61.534 57.895 0.00 0.00 37.83 3.41
664 667 3.172106 TTGACCCCGTTGGCTGGA 61.172 61.111 0.00 0.00 37.83 3.86
665 668 2.983592 GTTGACCCCGTTGGCTGG 60.984 66.667 0.00 0.00 37.83 4.85
666 669 1.178534 AATGTTGACCCCGTTGGCTG 61.179 55.000 0.00 0.00 37.83 4.85
667 670 0.469144 AAATGTTGACCCCGTTGGCT 60.469 50.000 0.00 0.00 37.83 4.75
668 671 0.391228 AAAATGTTGACCCCGTTGGC 59.609 50.000 0.00 0.00 37.83 4.52
669 672 2.900716 AAAAATGTTGACCCCGTTGG 57.099 45.000 0.00 0.00 41.37 3.77
740 743 2.231380 AGATTGTTGGGCCGGTCCT 61.231 57.895 28.64 4.65 34.39 3.85
1535 1624 1.078528 TCCTGTCCGGTCACCATCT 59.921 57.895 0.00 0.00 0.00 2.90
1555 1692 4.452733 GACCTTGAGGCCGTCCGG 62.453 72.222 0.24 0.24 39.32 5.14
1593 1730 3.379445 GTCGTCTTCCCGGAGCCA 61.379 66.667 0.73 0.00 0.00 4.75
1686 1825 3.575351 GAGCACCTTGCCGACGTCT 62.575 63.158 14.70 0.00 46.52 4.18
1694 1833 1.595382 ATATCGCCGAGCACCTTGC 60.595 57.895 0.00 0.00 45.46 4.01
1836 2146 7.387397 TGGATTGATTCAAATAACTGTTTTGGC 59.613 33.333 2.68 0.00 35.31 4.52
1852 2162 9.823647 TCAGTAAATAGAGAAGTGGATTGATTC 57.176 33.333 0.00 0.00 0.00 2.52
1853 2163 9.606631 GTCAGTAAATAGAGAAGTGGATTGATT 57.393 33.333 0.00 0.00 0.00 2.57
1854 2164 8.762645 TGTCAGTAAATAGAGAAGTGGATTGAT 58.237 33.333 0.00 0.00 0.00 2.57
1855 2165 8.134202 TGTCAGTAAATAGAGAAGTGGATTGA 57.866 34.615 0.00 0.00 0.00 2.57
1856 2166 8.777865 TTGTCAGTAAATAGAGAAGTGGATTG 57.222 34.615 0.00 0.00 0.00 2.67
1858 2168 9.220767 GTTTTGTCAGTAAATAGAGAAGTGGAT 57.779 33.333 0.00 0.00 0.00 3.41
1860 2170 7.360101 CGGTTTTGTCAGTAAATAGAGAAGTGG 60.360 40.741 0.00 0.00 0.00 4.00
1861 2171 7.170998 ACGGTTTTGTCAGTAAATAGAGAAGTG 59.829 37.037 0.00 0.00 0.00 3.16
1863 2173 7.653767 ACGGTTTTGTCAGTAAATAGAGAAG 57.346 36.000 0.00 0.00 0.00 2.85
1864 2174 7.816031 CCTACGGTTTTGTCAGTAAATAGAGAA 59.184 37.037 0.00 0.00 0.00 2.87
1865 2175 7.039504 ACCTACGGTTTTGTCAGTAAATAGAGA 60.040 37.037 0.00 0.00 27.29 3.10
1866 2176 7.095270 ACCTACGGTTTTGTCAGTAAATAGAG 58.905 38.462 0.00 0.00 27.29 2.43
1868 2178 8.031277 ACTACCTACGGTTTTGTCAGTAAATAG 58.969 37.037 0.00 0.00 37.09 1.73
1870 2180 6.762333 ACTACCTACGGTTTTGTCAGTAAAT 58.238 36.000 0.00 0.00 37.09 1.40
1871 2181 6.160576 ACTACCTACGGTTTTGTCAGTAAA 57.839 37.500 0.00 0.00 37.09 2.01
1872 2182 5.789643 ACTACCTACGGTTTTGTCAGTAA 57.210 39.130 0.00 0.00 37.09 2.24
1874 2184 4.099881 TGAACTACCTACGGTTTTGTCAGT 59.900 41.667 0.00 0.00 37.09 3.41
1875 2185 4.624015 TGAACTACCTACGGTTTTGTCAG 58.376 43.478 0.00 0.00 37.09 3.51
1876 2186 4.099881 ACTGAACTACCTACGGTTTTGTCA 59.900 41.667 0.00 0.00 37.09 3.58
1877 2187 4.446719 CACTGAACTACCTACGGTTTTGTC 59.553 45.833 0.00 0.00 37.09 3.18
1878 2188 4.374399 CACTGAACTACCTACGGTTTTGT 58.626 43.478 0.00 0.00 37.09 2.83
1879 2189 3.185797 GCACTGAACTACCTACGGTTTTG 59.814 47.826 0.00 0.00 37.09 2.44
1881 2191 2.608752 CGCACTGAACTACCTACGGTTT 60.609 50.000 0.00 0.00 37.09 3.27
1884 2194 0.524862 ACGCACTGAACTACCTACGG 59.475 55.000 0.00 0.00 0.00 4.02
1886 2196 8.348507 AGTATAATAACGCACTGAACTACCTAC 58.651 37.037 0.00 0.00 0.00 3.18
1888 2198 7.067859 TGAGTATAATAACGCACTGAACTACCT 59.932 37.037 0.00 0.00 0.00 3.08
1889 2199 7.198390 TGAGTATAATAACGCACTGAACTACC 58.802 38.462 0.00 0.00 0.00 3.18
1890 2200 8.691727 CATGAGTATAATAACGCACTGAACTAC 58.308 37.037 0.00 0.00 31.81 2.73
1891 2201 8.626526 TCATGAGTATAATAACGCACTGAACTA 58.373 33.333 0.00 0.00 31.81 2.24
1892 2202 7.489160 TCATGAGTATAATAACGCACTGAACT 58.511 34.615 0.00 0.00 31.81 3.01
1893 2203 7.694388 TCATGAGTATAATAACGCACTGAAC 57.306 36.000 0.00 0.00 31.81 3.18
1895 2205 8.887036 ATTTCATGAGTATAATAACGCACTGA 57.113 30.769 0.00 0.00 31.81 3.41
1896 2206 7.946768 CGATTTCATGAGTATAATAACGCACTG 59.053 37.037 0.00 0.00 31.81 3.66
1897 2207 7.652105 ACGATTTCATGAGTATAATAACGCACT 59.348 33.333 0.00 0.00 31.81 4.40
1898 2208 7.784176 ACGATTTCATGAGTATAATAACGCAC 58.216 34.615 0.00 0.00 31.81 5.34
1900 2210 9.302773 GAAACGATTTCATGAGTATAATAACGC 57.697 33.333 0.00 0.00 39.45 4.84
1905 2215 9.265901 CTGGAGAAACGATTTCATGAGTATAAT 57.734 33.333 11.33 0.00 42.10 1.28
1906 2216 8.258007 ACTGGAGAAACGATTTCATGAGTATAA 58.742 33.333 11.33 0.00 42.10 0.98
1907 2217 7.706607 CACTGGAGAAACGATTTCATGAGTATA 59.293 37.037 11.33 0.00 42.10 1.47
1910 2220 4.692625 CACTGGAGAAACGATTTCATGAGT 59.307 41.667 11.33 7.40 42.10 3.41
1911 2221 4.436584 GCACTGGAGAAACGATTTCATGAG 60.437 45.833 11.33 6.97 42.10 2.90
1913 2223 3.189080 TGCACTGGAGAAACGATTTCATG 59.811 43.478 11.33 0.00 42.10 3.07
1916 2226 2.808543 AGTGCACTGGAGAAACGATTTC 59.191 45.455 20.97 0.00 39.96 2.17
1917 2227 2.851195 AGTGCACTGGAGAAACGATTT 58.149 42.857 20.97 0.00 0.00 2.17
1918 2228 2.550830 AGTGCACTGGAGAAACGATT 57.449 45.000 20.97 0.00 0.00 3.34
1919 2229 2.550830 AAGTGCACTGGAGAAACGAT 57.449 45.000 22.49 0.00 0.00 3.73
1920 2230 2.325583 AAAGTGCACTGGAGAAACGA 57.674 45.000 22.49 0.00 0.00 3.85
1921 2231 4.749245 ATAAAAGTGCACTGGAGAAACG 57.251 40.909 22.49 0.00 0.00 3.60
1922 2232 8.947115 AGTATAATAAAAGTGCACTGGAGAAAC 58.053 33.333 22.49 12.03 0.00 2.78
1925 2277 7.847096 TCAGTATAATAAAAGTGCACTGGAGA 58.153 34.615 22.49 6.80 34.19 3.71
1954 2356 4.081406 AGCAAGCACCACAGAATGATAAA 58.919 39.130 0.00 0.00 39.69 1.40
1969 2411 4.385358 TCGAAGATGTGTATAGCAAGCA 57.615 40.909 0.00 0.00 0.00 3.91
1970 2412 7.408132 TTTATCGAAGATGTGTATAGCAAGC 57.592 36.000 0.00 0.00 45.12 4.01
2031 2480 8.428063 AGGGAAATGAGTCAGAGAGTAAATATG 58.572 37.037 0.00 0.00 0.00 1.78
2032 2481 8.560124 AGGGAAATGAGTCAGAGAGTAAATAT 57.440 34.615 0.00 0.00 0.00 1.28
2033 2482 7.619698 TGAGGGAAATGAGTCAGAGAGTAAATA 59.380 37.037 0.00 0.00 0.00 1.40
2034 2483 6.441924 TGAGGGAAATGAGTCAGAGAGTAAAT 59.558 38.462 0.00 0.00 0.00 1.40
2035 2484 5.780282 TGAGGGAAATGAGTCAGAGAGTAAA 59.220 40.000 0.00 0.00 0.00 2.01
2036 2485 5.333581 TGAGGGAAATGAGTCAGAGAGTAA 58.666 41.667 0.00 0.00 0.00 2.24
2402 2869 2.353889 CCTGACCGCTCAAATTCATCTG 59.646 50.000 0.00 0.00 0.00 2.90
2458 2925 5.766670 AGCTGAGTTTGATGATCTGTTTCAA 59.233 36.000 0.00 0.00 0.00 2.69
3072 3547 2.025767 CTCCGATCTGTGCAGGGAGG 62.026 65.000 12.32 7.74 40.44 4.30
3087 3562 0.033228 CCAGGCATCTTAGCTCTCCG 59.967 60.000 0.00 0.00 34.17 4.63
3150 3625 2.119801 TTTCCAGCCTGAGAATGCTC 57.880 50.000 0.00 0.00 41.67 4.26
3246 3721 2.105477 ACTCTTCCCGATATTGCTGCAT 59.895 45.455 1.84 0.00 0.00 3.96
3346 3821 1.865865 TGTTTCTTGTCCTCAGACGC 58.134 50.000 0.00 0.00 46.74 5.19
3357 3832 2.973224 CGGAAATGCGACTTGTTTCTTG 59.027 45.455 0.00 0.00 33.51 3.02
3534 4009 0.543277 TATGCTTCAGGCCTGACAGG 59.457 55.000 35.26 25.89 39.66 4.00
3564 4039 1.135527 CCCACATCATGCTGCGAAAAT 59.864 47.619 0.00 0.00 0.00 1.82
3659 4134 5.545658 TTTGCCGATCTTCTTATCAACAC 57.454 39.130 0.00 0.00 0.00 3.32
3674 4149 2.290008 TGCTCCAAACTCTATTTGCCGA 60.290 45.455 0.00 0.00 0.00 5.54
3679 4154 4.082026 GGCACAATGCTCCAAACTCTATTT 60.082 41.667 0.13 0.00 44.28 1.40
3702 4185 3.459232 TGCTTACTCGGAATCAGATGG 57.541 47.619 0.00 0.00 0.00 3.51
3717 4200 0.108186 CTGGACACCGCTCATGCTTA 60.108 55.000 0.00 0.00 36.97 3.09
3729 4212 7.952671 TCAGAAGGTATATTACATCTGGACAC 58.047 38.462 14.46 0.00 41.05 3.67
3735 4218 9.030452 GTCTCCATCAGAAGGTATATTACATCT 57.970 37.037 0.00 0.00 30.72 2.90
3741 4224 5.730296 CCGTCTCCATCAGAAGGTATATT 57.270 43.478 0.00 0.00 43.87 1.28
3754 4237 2.365635 CCCCCTGACCGTCTCCAT 60.366 66.667 0.00 0.00 0.00 3.41
3767 4250 5.927819 TGAAATAAATCATCAAATGCCCCC 58.072 37.500 0.00 0.00 0.00 5.40
3768 4251 6.822676 TGTTGAAATAAATCATCAAATGCCCC 59.177 34.615 0.00 0.00 35.07 5.80
3784 4267 6.459573 GCTGTTGAAGGAAGTGTGTTGAAATA 60.460 38.462 0.00 0.00 0.00 1.40
3803 4286 9.554724 ACTAAACAAATCATAATAACGCTGTTG 57.445 29.630 4.52 0.00 0.00 3.33
3846 4331 1.992557 ACCAAGTTCTAGGGGCATCAA 59.007 47.619 0.00 0.00 0.00 2.57
3903 4389 4.399303 GGGCATAGAAGCAAGTAACAATGT 59.601 41.667 0.00 0.00 35.83 2.71
3930 4416 2.834689 CATTGTTCACGGCTTAACGTC 58.165 47.619 0.00 0.00 46.75 4.34
3935 4421 3.214697 CAATGCATTGTTCACGGCTTA 57.785 42.857 27.81 0.00 33.22 3.09
3946 4432 7.741216 GCAATTACTGTAAAACACAATGCATTG 59.259 33.333 32.74 32.74 43.26 2.82
3976 4462 9.588096 AAATCAAGTTTCTAAAAGATACACCCT 57.412 29.630 1.34 0.00 30.06 4.34
3998 4484 5.591099 TGGACTGAAACTGAAAGCAAAATC 58.409 37.500 0.00 0.00 37.60 2.17
4040 4526 3.327757 TCCACATGAACTCCATATAGGGC 59.672 47.826 0.00 0.00 38.24 5.19
4061 4547 9.180678 CACAGTCATTTACAAAACAAAGGTATC 57.819 33.333 0.00 0.00 0.00 2.24
4130 4623 5.116180 TCACGTGAAATCCATGTAGAATCC 58.884 41.667 17.62 0.00 42.82 3.01
4187 4680 9.647918 ATGATATAGGTCAGATATCCATAACGT 57.352 33.333 0.00 0.00 36.03 3.99
4238 4734 8.306038 TCCTTCTTTGTGAATCCATGTTAAATG 58.694 33.333 0.00 0.00 33.71 2.32
4259 4757 5.738619 ACAAACCCCATGTTAAATCCTTC 57.261 39.130 0.00 0.00 35.67 3.46
4262 4760 7.558444 TCTGTATACAAACCCCATGTTAAATCC 59.442 37.037 7.06 0.00 35.67 3.01
4275 4774 9.855021 ATTAGCAATTTGTTCTGTATACAAACC 57.145 29.630 19.33 7.86 45.23 3.27
4398 4897 9.974980 ACAACGAACACCAGAAATAATAAAAAT 57.025 25.926 0.00 0.00 0.00 1.82
4400 4899 9.881529 GTACAACGAACACCAGAAATAATAAAA 57.118 29.630 0.00 0.00 0.00 1.52
4401 4900 9.275398 AGTACAACGAACACCAGAAATAATAAA 57.725 29.630 0.00 0.00 0.00 1.40
4402 4901 8.714179 CAGTACAACGAACACCAGAAATAATAA 58.286 33.333 0.00 0.00 0.00 1.40
4403 4902 7.148540 GCAGTACAACGAACACCAGAAATAATA 60.149 37.037 0.00 0.00 0.00 0.98
4404 4903 6.348213 GCAGTACAACGAACACCAGAAATAAT 60.348 38.462 0.00 0.00 0.00 1.28
4405 4904 5.049954 GCAGTACAACGAACACCAGAAATAA 60.050 40.000 0.00 0.00 0.00 1.40
4406 4905 4.449743 GCAGTACAACGAACACCAGAAATA 59.550 41.667 0.00 0.00 0.00 1.40
4407 4906 3.250040 GCAGTACAACGAACACCAGAAAT 59.750 43.478 0.00 0.00 0.00 2.17
4408 4907 2.610374 GCAGTACAACGAACACCAGAAA 59.390 45.455 0.00 0.00 0.00 2.52
4409 4908 2.206750 GCAGTACAACGAACACCAGAA 58.793 47.619 0.00 0.00 0.00 3.02
4410 4909 1.539496 GGCAGTACAACGAACACCAGA 60.539 52.381 0.00 0.00 0.00 3.86
4411 4910 0.865769 GGCAGTACAACGAACACCAG 59.134 55.000 0.00 0.00 0.00 4.00
4412 4911 0.876777 CGGCAGTACAACGAACACCA 60.877 55.000 0.00 0.00 0.00 4.17
4413 4912 0.877213 ACGGCAGTACAACGAACACC 60.877 55.000 10.19 0.00 0.00 4.16
4414 4913 0.231279 CACGGCAGTACAACGAACAC 59.769 55.000 10.19 0.00 0.00 3.32
4415 4914 0.102663 TCACGGCAGTACAACGAACA 59.897 50.000 10.19 0.00 0.00 3.18
4416 4915 1.425412 ATCACGGCAGTACAACGAAC 58.575 50.000 10.19 0.00 0.00 3.95
4417 4916 1.795872 CAATCACGGCAGTACAACGAA 59.204 47.619 10.19 0.29 0.00 3.85
4418 4917 1.000052 TCAATCACGGCAGTACAACGA 60.000 47.619 10.19 0.00 0.00 3.85
4419 4918 1.424403 TCAATCACGGCAGTACAACG 58.576 50.000 0.00 0.00 0.00 4.10
4420 4919 3.064207 TCTTCAATCACGGCAGTACAAC 58.936 45.455 0.00 0.00 0.00 3.32
4421 4920 3.064207 GTCTTCAATCACGGCAGTACAA 58.936 45.455 0.00 0.00 0.00 2.41
4422 4921 2.683968 GTCTTCAATCACGGCAGTACA 58.316 47.619 0.00 0.00 0.00 2.90
4423 4922 1.654105 CGTCTTCAATCACGGCAGTAC 59.346 52.381 0.00 0.00 32.19 2.73
4424 4923 1.542472 TCGTCTTCAATCACGGCAGTA 59.458 47.619 0.00 0.00 36.64 2.74
4425 4924 0.317160 TCGTCTTCAATCACGGCAGT 59.683 50.000 0.00 0.00 36.64 4.40
4426 4925 1.428448 TTCGTCTTCAATCACGGCAG 58.572 50.000 0.00 0.00 36.64 4.85
4427 4926 2.093306 ATTCGTCTTCAATCACGGCA 57.907 45.000 0.00 0.00 36.64 5.69
4428 4927 3.444916 TCTATTCGTCTTCAATCACGGC 58.555 45.455 0.00 0.00 36.64 5.68
4429 4928 5.050769 CCAATCTATTCGTCTTCAATCACGG 60.051 44.000 0.00 0.00 36.64 4.94
4430 4929 5.748630 TCCAATCTATTCGTCTTCAATCACG 59.251 40.000 0.00 0.00 37.36 4.35
4431 4930 7.278868 ACTTCCAATCTATTCGTCTTCAATCAC 59.721 37.037 0.00 0.00 0.00 3.06
4432 4931 7.331026 ACTTCCAATCTATTCGTCTTCAATCA 58.669 34.615 0.00 0.00 0.00 2.57
4433 4932 7.778470 ACTTCCAATCTATTCGTCTTCAATC 57.222 36.000 0.00 0.00 0.00 2.67
4434 4933 8.567285 AAACTTCCAATCTATTCGTCTTCAAT 57.433 30.769 0.00 0.00 0.00 2.57
4435 4934 7.979444 AAACTTCCAATCTATTCGTCTTCAA 57.021 32.000 0.00 0.00 0.00 2.69
4436 4935 7.878127 AGAAAACTTCCAATCTATTCGTCTTCA 59.122 33.333 0.00 0.00 0.00 3.02
4437 4936 8.257830 AGAAAACTTCCAATCTATTCGTCTTC 57.742 34.615 0.00 0.00 0.00 2.87
4438 4937 7.063544 CGAGAAAACTTCCAATCTATTCGTCTT 59.936 37.037 0.00 0.00 0.00 3.01
4439 4938 6.531948 CGAGAAAACTTCCAATCTATTCGTCT 59.468 38.462 0.00 0.00 0.00 4.18
4440 4939 6.697152 CGAGAAAACTTCCAATCTATTCGTC 58.303 40.000 0.00 0.00 0.00 4.20
4441 4940 5.063564 GCGAGAAAACTTCCAATCTATTCGT 59.936 40.000 0.00 0.00 0.00 3.85
4442 4941 5.063438 TGCGAGAAAACTTCCAATCTATTCG 59.937 40.000 0.00 0.00 0.00 3.34
4443 4942 6.422776 TGCGAGAAAACTTCCAATCTATTC 57.577 37.500 0.00 0.00 0.00 1.75
4444 4943 6.817765 TTGCGAGAAAACTTCCAATCTATT 57.182 33.333 0.00 0.00 0.00 1.73
4445 4944 6.817765 TTTGCGAGAAAACTTCCAATCTAT 57.182 33.333 0.00 0.00 0.00 1.98
4446 4945 6.627395 TTTTGCGAGAAAACTTCCAATCTA 57.373 33.333 0.00 0.00 0.00 1.98
4447 4946 5.514274 TTTTGCGAGAAAACTTCCAATCT 57.486 34.783 0.00 0.00 0.00 2.40
4589 5088 8.692710 CGTGGGCTTACTAGATGGATAAATATA 58.307 37.037 0.00 0.00 0.00 0.86
4590 5089 7.556844 CGTGGGCTTACTAGATGGATAAATAT 58.443 38.462 0.00 0.00 0.00 1.28
4591 5090 6.573680 GCGTGGGCTTACTAGATGGATAAATA 60.574 42.308 0.00 0.00 35.83 1.40
4592 5091 5.794894 CGTGGGCTTACTAGATGGATAAAT 58.205 41.667 0.00 0.00 0.00 1.40
4593 5092 4.502604 GCGTGGGCTTACTAGATGGATAAA 60.503 45.833 0.00 0.00 35.83 1.40
4594 5093 3.006537 GCGTGGGCTTACTAGATGGATAA 59.993 47.826 0.00 0.00 35.83 1.75
4595 5094 2.561419 GCGTGGGCTTACTAGATGGATA 59.439 50.000 0.00 0.00 35.83 2.59
4596 5095 1.344763 GCGTGGGCTTACTAGATGGAT 59.655 52.381 0.00 0.00 35.83 3.41
4597 5096 0.750850 GCGTGGGCTTACTAGATGGA 59.249 55.000 0.00 0.00 35.83 3.41
4598 5097 0.464036 TGCGTGGGCTTACTAGATGG 59.536 55.000 0.00 0.00 40.82 3.51
4599 5098 1.137086 AGTGCGTGGGCTTACTAGATG 59.863 52.381 0.00 0.00 40.82 2.90
4600 5099 1.486211 AGTGCGTGGGCTTACTAGAT 58.514 50.000 0.00 0.00 40.82 1.98
4601 5100 1.067142 CAAGTGCGTGGGCTTACTAGA 60.067 52.381 0.00 0.00 40.82 2.43
4602 5101 1.359848 CAAGTGCGTGGGCTTACTAG 58.640 55.000 0.00 0.00 40.82 2.57
4603 5102 0.672401 GCAAGTGCGTGGGCTTACTA 60.672 55.000 0.00 0.00 40.82 1.82
4604 5103 1.966451 GCAAGTGCGTGGGCTTACT 60.966 57.895 0.00 0.00 40.82 2.24
4605 5104 2.258013 TGCAAGTGCGTGGGCTTAC 61.258 57.895 0.00 0.00 45.83 2.34
4606 5105 2.112087 TGCAAGTGCGTGGGCTTA 59.888 55.556 0.00 0.00 45.83 3.09
4607 5106 3.595758 GTGCAAGTGCGTGGGCTT 61.596 61.111 0.00 0.00 45.83 4.35
4608 5107 4.873810 TGTGCAAGTGCGTGGGCT 62.874 61.111 0.00 0.00 45.83 5.19
4609 5108 3.211564 AATGTGCAAGTGCGTGGGC 62.212 57.895 0.00 0.00 45.83 5.36
4610 5109 1.081242 GAATGTGCAAGTGCGTGGG 60.081 57.895 0.00 0.00 45.83 4.61
4611 5110 0.661187 GTGAATGTGCAAGTGCGTGG 60.661 55.000 0.00 0.00 45.83 4.94
4612 5111 0.029167 TGTGAATGTGCAAGTGCGTG 59.971 50.000 0.00 0.00 45.83 5.34
4613 5112 0.953727 ATGTGAATGTGCAAGTGCGT 59.046 45.000 0.00 0.00 45.83 5.24
4614 5113 2.898181 TATGTGAATGTGCAAGTGCG 57.102 45.000 0.00 0.00 45.83 5.34
4615 5114 4.100529 GACATATGTGAATGTGCAAGTGC 58.899 43.478 14.43 0.00 40.17 4.40
4616 5115 5.299582 TGACATATGTGAATGTGCAAGTG 57.700 39.130 14.43 0.00 40.17 3.16
4617 5116 5.416639 ACATGACATATGTGAATGTGCAAGT 59.583 36.000 23.51 11.32 40.17 3.16
4618 5117 5.886992 ACATGACATATGTGAATGTGCAAG 58.113 37.500 23.51 10.82 40.17 4.01
4619 5118 5.900865 ACATGACATATGTGAATGTGCAA 57.099 34.783 23.51 0.38 40.17 4.08
4620 5119 6.998968 TTACATGACATATGTGAATGTGCA 57.001 33.333 28.25 18.66 40.17 4.57
4621 5120 6.361481 GCATTACATGACATATGTGAATGTGC 59.639 38.462 28.25 22.67 40.17 4.57
4622 5121 6.859508 GGCATTACATGACATATGTGAATGTG 59.140 38.462 28.25 19.19 40.17 3.21
4623 5122 6.774170 AGGCATTACATGACATATGTGAATGT 59.226 34.615 25.68 25.68 42.15 2.71
4624 5123 7.210718 AGGCATTACATGACATATGTGAATG 57.789 36.000 14.43 17.79 42.15 2.67
4625 5124 7.609146 CCTAGGCATTACATGACATATGTGAAT 59.391 37.037 14.43 3.90 42.15 2.57
4626 5125 6.936335 CCTAGGCATTACATGACATATGTGAA 59.064 38.462 14.43 1.29 42.15 3.18
4627 5126 6.043127 ACCTAGGCATTACATGACATATGTGA 59.957 38.462 14.43 4.97 42.15 3.58
4628 5127 6.233434 ACCTAGGCATTACATGACATATGTG 58.767 40.000 14.43 1.27 42.15 3.21
4629 5128 6.439636 ACCTAGGCATTACATGACATATGT 57.560 37.500 8.43 8.43 42.15 2.29
4630 5129 6.372659 GGAACCTAGGCATTACATGACATATG 59.627 42.308 9.30 0.00 42.15 1.78
4631 5130 6.476378 GGAACCTAGGCATTACATGACATAT 58.524 40.000 9.30 0.00 42.15 1.78
4632 5131 5.865085 GGAACCTAGGCATTACATGACATA 58.135 41.667 9.30 0.00 42.15 2.29
4633 5132 4.718961 GGAACCTAGGCATTACATGACAT 58.281 43.478 9.30 0.00 42.15 3.06
4634 5133 4.150897 GGAACCTAGGCATTACATGACA 57.849 45.455 9.30 0.00 42.15 3.58
4651 5150 1.952296 CAGAATATGCAGGCTGGGAAC 59.048 52.381 17.64 0.00 0.00 3.62
4652 5151 1.133699 CCAGAATATGCAGGCTGGGAA 60.134 52.381 17.64 0.00 43.22 3.97
4653 5152 0.475475 CCAGAATATGCAGGCTGGGA 59.525 55.000 17.64 0.00 43.22 4.37
4654 5153 3.031916 CCAGAATATGCAGGCTGGG 57.968 57.895 17.64 1.95 43.22 4.45
4656 5155 1.202568 TCGACCAGAATATGCAGGCTG 60.203 52.381 10.94 10.94 0.00 4.85
4657 5156 1.123077 TCGACCAGAATATGCAGGCT 58.877 50.000 0.00 0.00 0.00 4.58
4658 5157 1.869767 CTTCGACCAGAATATGCAGGC 59.130 52.381 0.00 0.00 38.34 4.85
4659 5158 2.487934 CCTTCGACCAGAATATGCAGG 58.512 52.381 0.00 0.00 38.34 4.85
4660 5159 2.487934 CCCTTCGACCAGAATATGCAG 58.512 52.381 0.00 0.00 38.34 4.41
4661 5160 1.475034 GCCCTTCGACCAGAATATGCA 60.475 52.381 0.00 0.00 38.34 3.96
4662 5161 1.230324 GCCCTTCGACCAGAATATGC 58.770 55.000 0.00 0.00 38.34 3.14
4663 5162 1.068588 TCGCCCTTCGACCAGAATATG 59.931 52.381 0.00 0.00 43.16 1.78
4664 5163 1.410004 TCGCCCTTCGACCAGAATAT 58.590 50.000 0.00 0.00 43.16 1.28
4665 5164 2.890612 TCGCCCTTCGACCAGAATA 58.109 52.632 0.00 0.00 43.16 1.75
4666 5165 3.708210 TCGCCCTTCGACCAGAAT 58.292 55.556 0.00 0.00 43.16 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.