Multiple sequence alignment - TraesCS7B01G399600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G399600 chr7B 100.000 2545 0 0 1 2545 665709124 665711668 0.000000e+00 4700
1 TraesCS7B01G399600 chr7B 81.034 174 28 5 228 398 693394790 693394619 1.590000e-27 134
2 TraesCS7B01G399600 chr7B 81.034 174 28 5 228 398 698931473 698931302 1.590000e-27 134
3 TraesCS7B01G399600 chr1A 89.513 1745 176 6 803 2545 16385737 16383998 0.000000e+00 2202
4 TraesCS7B01G399600 chr5B 93.746 1455 89 2 1092 2545 319892414 319890961 0.000000e+00 2182
5 TraesCS7B01G399600 chr5B 95.238 84 4 0 803 886 319892924 319892841 1.590000e-27 134
6 TraesCS7B01G399600 chr5B 82.237 152 23 4 249 398 354990116 354989967 7.390000e-26 128
7 TraesCS7B01G399600 chr5D 85.161 155 16 6 249 399 65883333 65883182 4.390000e-33 152
8 TraesCS7B01G399600 chr6B 76.677 313 46 19 90 390 153360540 153360243 5.670000e-32 148
9 TraesCS7B01G399600 chr3D 84.768 151 19 2 252 398 356929964 356929814 5.670000e-32 148
10 TraesCS7B01G399600 chr7D 77.500 280 40 13 130 398 382729355 382729622 2.040000e-31 147
11 TraesCS7B01G399600 chr7A 79.091 220 36 7 184 401 8230430 8230641 2.640000e-30 143
12 TraesCS7B01G399600 chr2D 81.325 166 28 3 234 398 549863465 549863302 5.710000e-27 132
13 TraesCS7B01G399600 chr2A 81.818 132 18 5 182 313 261676077 261676202 3.460000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G399600 chr7B 665709124 665711668 2544 False 4700 4700 100.000 1 2545 1 chr7B.!!$F1 2544
1 TraesCS7B01G399600 chr1A 16383998 16385737 1739 True 2202 2202 89.513 803 2545 1 chr1A.!!$R1 1742
2 TraesCS7B01G399600 chr5B 319890961 319892924 1963 True 1158 2182 94.492 803 2545 2 chr5B.!!$R2 1742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 877 0.034186 TTAGGTCTTCGGCGTCCCTA 60.034 55.0 6.85 9.41 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2413 0.028642 AACCTCCATATCCCCAGCCT 60.029 55.0 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.672307 GCTGGCTGCTGCTCAGTT 60.672 61.111 24.23 0.00 44.66 3.16
24 25 2.979197 GCTGGCTGCTGCTCAGTTG 61.979 63.158 24.23 9.91 44.66 3.16
25 26 1.600076 CTGGCTGCTGCTCAGTTGT 60.600 57.895 15.64 0.00 44.66 3.32
26 27 1.152902 TGGCTGCTGCTCAGTTGTT 60.153 52.632 15.64 0.00 44.66 2.83
27 28 0.752743 TGGCTGCTGCTCAGTTGTTT 60.753 50.000 15.64 0.00 44.66 2.83
28 29 0.386838 GGCTGCTGCTCAGTTGTTTT 59.613 50.000 15.64 0.00 44.66 2.43
29 30 1.202452 GGCTGCTGCTCAGTTGTTTTT 60.202 47.619 15.64 0.00 44.66 1.94
52 53 6.912203 TTTTCTTCCATTTTTCCCGTTTTC 57.088 33.333 0.00 0.00 0.00 2.29
53 54 5.862678 TTCTTCCATTTTTCCCGTTTTCT 57.137 34.783 0.00 0.00 0.00 2.52
54 55 5.195001 TCTTCCATTTTTCCCGTTTTCTG 57.805 39.130 0.00 0.00 0.00 3.02
55 56 4.647399 TCTTCCATTTTTCCCGTTTTCTGT 59.353 37.500 0.00 0.00 0.00 3.41
56 57 5.128008 TCTTCCATTTTTCCCGTTTTCTGTT 59.872 36.000 0.00 0.00 0.00 3.16
57 58 4.688021 TCCATTTTTCCCGTTTTCTGTTG 58.312 39.130 0.00 0.00 0.00 3.33
58 59 3.247411 CCATTTTTCCCGTTTTCTGTTGC 59.753 43.478 0.00 0.00 0.00 4.17
59 60 2.196295 TTTTCCCGTTTTCTGTTGCG 57.804 45.000 0.00 0.00 0.00 4.85
60 61 1.096416 TTTCCCGTTTTCTGTTGCGT 58.904 45.000 0.00 0.00 0.00 5.24
61 62 0.378962 TTCCCGTTTTCTGTTGCGTG 59.621 50.000 0.00 0.00 0.00 5.34
62 63 0.745128 TCCCGTTTTCTGTTGCGTGT 60.745 50.000 0.00 0.00 0.00 4.49
63 64 0.099791 CCCGTTTTCTGTTGCGTGTT 59.900 50.000 0.00 0.00 0.00 3.32
64 65 1.468395 CCCGTTTTCTGTTGCGTGTTT 60.468 47.619 0.00 0.00 0.00 2.83
65 66 2.255316 CCGTTTTCTGTTGCGTGTTTT 58.745 42.857 0.00 0.00 0.00 2.43
66 67 2.664085 CCGTTTTCTGTTGCGTGTTTTT 59.336 40.909 0.00 0.00 0.00 1.94
94 95 9.684448 CTTTCTCTTTTTCAGATTAGGTTTTCC 57.316 33.333 0.00 0.00 41.05 3.13
167 168 4.116961 TGTGTTACACAAAGAGTTCTCCG 58.883 43.478 16.40 0.00 41.69 4.63
168 169 4.117685 GTGTTACACAAAGAGTTCTCCGT 58.882 43.478 10.96 0.00 34.08 4.69
169 170 4.025979 GTGTTACACAAAGAGTTCTCCGTG 60.026 45.833 10.96 10.80 35.44 4.94
170 171 2.981859 ACACAAAGAGTTCTCCGTGT 57.018 45.000 11.71 11.71 36.82 4.49
171 172 5.163530 TGTTACACAAAGAGTTCTCCGTGTA 60.164 40.000 16.34 16.34 39.97 2.90
172 173 4.602340 ACACAAAGAGTTCTCCGTGTAT 57.398 40.909 14.30 0.51 38.60 2.29
173 174 4.957296 ACACAAAGAGTTCTCCGTGTATT 58.043 39.130 14.30 2.05 38.60 1.89
174 175 6.092955 ACACAAAGAGTTCTCCGTGTATTA 57.907 37.500 14.30 0.00 38.60 0.98
175 176 5.924825 ACACAAAGAGTTCTCCGTGTATTAC 59.075 40.000 14.30 0.00 38.60 1.89
254 255 9.425893 CATTGTGTATTTAACTAATCTTCAGCG 57.574 33.333 0.00 0.00 0.00 5.18
255 256 8.542497 TTGTGTATTTAACTAATCTTCAGCGT 57.458 30.769 0.00 0.00 0.00 5.07
256 257 9.642327 TTGTGTATTTAACTAATCTTCAGCGTA 57.358 29.630 0.00 0.00 0.00 4.42
257 258 9.811995 TGTGTATTTAACTAATCTTCAGCGTAT 57.188 29.630 0.00 0.00 0.00 3.06
265 266 8.942338 AACTAATCTTCAGCGTATATCACAAA 57.058 30.769 0.00 0.00 0.00 2.83
266 267 8.942338 ACTAATCTTCAGCGTATATCACAAAA 57.058 30.769 0.00 0.00 0.00 2.44
267 268 9.378551 ACTAATCTTCAGCGTATATCACAAAAA 57.621 29.630 0.00 0.00 0.00 1.94
270 271 7.609760 TCTTCAGCGTATATCACAAAAATGT 57.390 32.000 0.00 0.00 0.00 2.71
271 272 8.039603 TCTTCAGCGTATATCACAAAAATGTT 57.960 30.769 0.00 0.00 0.00 2.71
272 273 8.175069 TCTTCAGCGTATATCACAAAAATGTTC 58.825 33.333 0.00 0.00 0.00 3.18
273 274 7.371126 TCAGCGTATATCACAAAAATGTTCA 57.629 32.000 0.00 0.00 0.00 3.18
274 275 7.811653 TCAGCGTATATCACAAAAATGTTCAA 58.188 30.769 0.00 0.00 0.00 2.69
275 276 8.458052 TCAGCGTATATCACAAAAATGTTCAAT 58.542 29.630 0.00 0.00 0.00 2.57
276 277 8.525876 CAGCGTATATCACAAAAATGTTCAATG 58.474 33.333 0.00 0.00 0.00 2.82
277 278 8.243426 AGCGTATATCACAAAAATGTTCAATGT 58.757 29.630 0.00 0.00 0.00 2.71
278 279 8.313227 GCGTATATCACAAAAATGTTCAATGTG 58.687 33.333 0.00 0.00 42.01 3.21
279 280 9.340695 CGTATATCACAAAAATGTTCAATGTGT 57.659 29.630 4.37 0.00 41.52 3.72
285 286 9.591792 TCACAAAAATGTTCAATGTGTATTTGA 57.408 25.926 0.00 0.00 41.52 2.69
341 342 9.190858 TCAATGTTTGTGTAATAATTGTTCAGC 57.809 29.630 0.00 0.00 30.56 4.26
342 343 7.795431 ATGTTTGTGTAATAATTGTTCAGCG 57.205 32.000 0.00 0.00 0.00 5.18
343 344 6.730175 TGTTTGTGTAATAATTGTTCAGCGT 58.270 32.000 0.00 0.00 0.00 5.07
344 345 7.862648 TGTTTGTGTAATAATTGTTCAGCGTA 58.137 30.769 0.00 0.00 0.00 4.42
345 346 8.508062 TGTTTGTGTAATAATTGTTCAGCGTAT 58.492 29.630 0.00 0.00 0.00 3.06
346 347 9.976255 GTTTGTGTAATAATTGTTCAGCGTATA 57.024 29.630 0.00 0.00 0.00 1.47
347 348 9.976255 TTTGTGTAATAATTGTTCAGCGTATAC 57.024 29.630 0.00 0.00 0.00 1.47
348 349 8.705048 TGTGTAATAATTGTTCAGCGTATACA 57.295 30.769 3.32 0.00 0.00 2.29
349 350 9.152595 TGTGTAATAATTGTTCAGCGTATACAA 57.847 29.630 3.32 0.00 36.35 2.41
350 351 9.976255 GTGTAATAATTGTTCAGCGTATACAAA 57.024 29.630 3.32 0.00 35.62 2.83
355 356 7.795431 AATTGTTCAGCGTATACAAAACATG 57.205 32.000 3.32 0.00 35.62 3.21
356 357 5.933187 TGTTCAGCGTATACAAAACATGT 57.067 34.783 3.32 0.00 46.36 3.21
357 358 6.307031 TGTTCAGCGTATACAAAACATGTT 57.693 33.333 4.92 4.92 43.63 2.71
358 359 6.367421 TGTTCAGCGTATACAAAACATGTTC 58.633 36.000 12.39 0.00 43.63 3.18
359 360 6.017852 TGTTCAGCGTATACAAAACATGTTCA 60.018 34.615 12.39 0.00 43.63 3.18
360 361 6.546972 TCAGCGTATACAAAACATGTTCAA 57.453 33.333 12.39 0.00 43.63 2.69
361 362 7.139896 TCAGCGTATACAAAACATGTTCAAT 57.860 32.000 12.39 5.94 43.63 2.57
362 363 7.020602 TCAGCGTATACAAAACATGTTCAATG 58.979 34.615 12.39 13.47 43.63 2.82
363 364 6.801377 CAGCGTATACAAAACATGTTCAATGT 59.199 34.615 21.10 21.10 43.63 2.71
364 365 7.960195 CAGCGTATACAAAACATGTTCAATGTA 59.040 33.333 23.04 23.04 43.63 2.29
365 366 8.673711 AGCGTATACAAAACATGTTCAATGTAT 58.326 29.630 28.58 28.58 43.63 2.29
366 367 9.923786 GCGTATACAAAACATGTTCAATGTATA 57.076 29.630 27.33 27.33 43.63 1.47
447 448 9.804758 TTTAGAATTTTAAAATGGTGTTCGTGT 57.195 25.926 14.04 0.00 0.00 4.49
450 451 9.974980 AGAATTTTAAAATGGTGTTCGTGTATT 57.025 25.926 14.04 0.00 0.00 1.89
453 454 9.751542 ATTTTAAAATGGTGTTCGTGTATTTCA 57.248 25.926 12.62 0.00 0.00 2.69
454 455 8.789881 TTTAAAATGGTGTTCGTGTATTTCAG 57.210 30.769 0.00 0.00 0.00 3.02
455 456 6.385649 AAAATGGTGTTCGTGTATTTCAGT 57.614 33.333 0.00 0.00 0.00 3.41
456 457 5.356882 AATGGTGTTCGTGTATTTCAGTG 57.643 39.130 0.00 0.00 0.00 3.66
457 458 3.799366 TGGTGTTCGTGTATTTCAGTGT 58.201 40.909 0.00 0.00 0.00 3.55
458 459 4.193090 TGGTGTTCGTGTATTTCAGTGTT 58.807 39.130 0.00 0.00 0.00 3.32
459 460 4.636648 TGGTGTTCGTGTATTTCAGTGTTT 59.363 37.500 0.00 0.00 0.00 2.83
460 461 4.967575 GGTGTTCGTGTATTTCAGTGTTTG 59.032 41.667 0.00 0.00 0.00 2.93
461 462 5.448089 GGTGTTCGTGTATTTCAGTGTTTGT 60.448 40.000 0.00 0.00 0.00 2.83
462 463 6.025280 GTGTTCGTGTATTTCAGTGTTTGTT 58.975 36.000 0.00 0.00 0.00 2.83
463 464 6.193959 GTGTTCGTGTATTTCAGTGTTTGTTC 59.806 38.462 0.00 0.00 0.00 3.18
464 465 6.128254 TGTTCGTGTATTTCAGTGTTTGTTCA 60.128 34.615 0.00 0.00 0.00 3.18
465 466 6.612247 TCGTGTATTTCAGTGTTTGTTCAT 57.388 33.333 0.00 0.00 0.00 2.57
466 467 7.022055 TCGTGTATTTCAGTGTTTGTTCATT 57.978 32.000 0.00 0.00 0.00 2.57
467 468 7.476667 TCGTGTATTTCAGTGTTTGTTCATTT 58.523 30.769 0.00 0.00 0.00 2.32
468 469 7.971168 TCGTGTATTTCAGTGTTTGTTCATTTT 59.029 29.630 0.00 0.00 0.00 1.82
469 470 9.227490 CGTGTATTTCAGTGTTTGTTCATTTTA 57.773 29.630 0.00 0.00 0.00 1.52
519 520 7.721286 TTTTTCAAGTTTCAAAAGTTGCTCA 57.279 28.000 15.18 3.09 44.85 4.26
520 521 7.903995 TTTTCAAGTTTCAAAAGTTGCTCAT 57.096 28.000 15.18 0.00 44.85 2.90
521 522 6.890663 TTCAAGTTTCAAAAGTTGCTCATG 57.109 33.333 15.18 0.00 44.85 3.07
522 523 6.206395 TCAAGTTTCAAAAGTTGCTCATGA 57.794 33.333 15.18 0.00 44.85 3.07
523 524 6.808829 TCAAGTTTCAAAAGTTGCTCATGAT 58.191 32.000 15.18 0.00 44.85 2.45
524 525 7.267128 TCAAGTTTCAAAAGTTGCTCATGATT 58.733 30.769 15.18 0.00 44.85 2.57
525 526 7.765360 TCAAGTTTCAAAAGTTGCTCATGATTT 59.235 29.630 15.18 0.00 44.85 2.17
526 527 8.392612 CAAGTTTCAAAAGTTGCTCATGATTTT 58.607 29.630 9.44 0.00 40.99 1.82
527 528 8.496707 AGTTTCAAAAGTTGCTCATGATTTTT 57.503 26.923 0.00 0.00 0.00 1.94
528 529 8.606602 AGTTTCAAAAGTTGCTCATGATTTTTC 58.393 29.630 0.00 0.00 0.00 2.29
529 530 8.389603 GTTTCAAAAGTTGCTCATGATTTTTCA 58.610 29.630 0.00 0.00 0.00 2.69
530 531 8.489990 TTCAAAAGTTGCTCATGATTTTTCAA 57.510 26.923 0.00 0.00 0.00 2.69
531 532 8.489990 TCAAAAGTTGCTCATGATTTTTCAAA 57.510 26.923 0.00 0.00 0.00 2.69
532 533 8.389603 TCAAAAGTTGCTCATGATTTTTCAAAC 58.610 29.630 0.00 0.00 0.00 2.93
533 534 7.846644 AAAGTTGCTCATGATTTTTCAAACA 57.153 28.000 0.00 0.00 0.00 2.83
534 535 8.441312 AAAGTTGCTCATGATTTTTCAAACAT 57.559 26.923 0.00 0.00 0.00 2.71
535 536 8.441312 AAGTTGCTCATGATTTTTCAAACATT 57.559 26.923 0.00 0.00 0.00 2.71
536 537 9.545105 AAGTTGCTCATGATTTTTCAAACATTA 57.455 25.926 0.00 0.00 0.00 1.90
537 538 9.715121 AGTTGCTCATGATTTTTCAAACATTAT 57.285 25.926 0.00 0.00 0.00 1.28
540 541 9.708092 TGCTCATGATTTTTCAAACATTATTCA 57.292 25.926 0.00 0.00 0.00 2.57
541 542 9.962759 GCTCATGATTTTTCAAACATTATTCAC 57.037 29.630 0.00 0.00 0.00 3.18
612 613 6.729391 TTTTAAAACAAAAACAGACCTGCC 57.271 33.333 0.00 0.00 0.00 4.85
613 614 2.577449 AAACAAAAACAGACCTGCCG 57.423 45.000 0.00 0.00 0.00 5.69
614 615 1.470051 AACAAAAACAGACCTGCCGT 58.530 45.000 0.00 0.00 0.00 5.68
615 616 1.470051 ACAAAAACAGACCTGCCGTT 58.530 45.000 0.00 0.00 0.00 4.44
616 617 1.404035 ACAAAAACAGACCTGCCGTTC 59.596 47.619 0.00 0.00 0.00 3.95
617 618 1.403679 CAAAAACAGACCTGCCGTTCA 59.596 47.619 0.00 0.00 0.00 3.18
618 619 1.308998 AAAACAGACCTGCCGTTCAG 58.691 50.000 0.00 0.00 42.49 3.02
619 620 1.166531 AAACAGACCTGCCGTTCAGC 61.167 55.000 0.00 0.00 41.50 4.26
620 621 2.044806 AACAGACCTGCCGTTCAGCT 62.045 55.000 0.00 0.00 41.50 4.24
621 622 1.302033 CAGACCTGCCGTTCAGCTT 60.302 57.895 0.00 0.00 41.50 3.74
622 623 0.037326 CAGACCTGCCGTTCAGCTTA 60.037 55.000 0.00 0.00 41.50 3.09
623 624 0.037232 AGACCTGCCGTTCAGCTTAC 60.037 55.000 0.00 0.00 41.50 2.34
624 625 1.003718 ACCTGCCGTTCAGCTTACC 60.004 57.895 0.00 0.00 41.50 2.85
625 626 1.296715 CCTGCCGTTCAGCTTACCT 59.703 57.895 0.00 0.00 41.50 3.08
626 627 1.021390 CCTGCCGTTCAGCTTACCTG 61.021 60.000 0.00 0.00 41.50 4.00
627 628 0.320771 CTGCCGTTCAGCTTACCTGT 60.321 55.000 0.00 0.00 42.38 4.00
628 629 0.107831 TGCCGTTCAGCTTACCTGTT 59.892 50.000 0.00 0.00 42.38 3.16
629 630 1.235724 GCCGTTCAGCTTACCTGTTT 58.764 50.000 0.00 0.00 42.38 2.83
630 631 1.069227 GCCGTTCAGCTTACCTGTTTG 60.069 52.381 0.00 0.00 42.38 2.93
631 632 2.489971 CCGTTCAGCTTACCTGTTTGA 58.510 47.619 0.00 0.00 42.38 2.69
632 633 3.074412 CCGTTCAGCTTACCTGTTTGAT 58.926 45.455 0.00 0.00 42.38 2.57
633 634 3.502211 CCGTTCAGCTTACCTGTTTGATT 59.498 43.478 0.00 0.00 42.38 2.57
634 635 4.023193 CCGTTCAGCTTACCTGTTTGATTT 60.023 41.667 0.00 0.00 42.38 2.17
635 636 5.507315 CCGTTCAGCTTACCTGTTTGATTTT 60.507 40.000 0.00 0.00 42.38 1.82
636 637 6.293735 CCGTTCAGCTTACCTGTTTGATTTTA 60.294 38.462 0.00 0.00 42.38 1.52
637 638 7.305474 CGTTCAGCTTACCTGTTTGATTTTAT 58.695 34.615 0.00 0.00 42.38 1.40
638 639 7.481798 CGTTCAGCTTACCTGTTTGATTTTATC 59.518 37.037 0.00 0.00 42.38 1.75
639 640 7.072177 TCAGCTTACCTGTTTGATTTTATCG 57.928 36.000 0.00 0.00 42.38 2.92
640 641 6.876789 TCAGCTTACCTGTTTGATTTTATCGA 59.123 34.615 0.00 0.00 42.38 3.59
641 642 7.552687 TCAGCTTACCTGTTTGATTTTATCGAT 59.447 33.333 2.16 2.16 42.38 3.59
642 643 8.184192 CAGCTTACCTGTTTGATTTTATCGATT 58.816 33.333 1.71 0.00 36.79 3.34
643 644 8.398665 AGCTTACCTGTTTGATTTTATCGATTC 58.601 33.333 1.71 0.00 0.00 2.52
644 645 8.398665 GCTTACCTGTTTGATTTTATCGATTCT 58.601 33.333 1.71 0.00 0.00 2.40
645 646 9.922305 CTTACCTGTTTGATTTTATCGATTCTC 57.078 33.333 1.71 0.00 0.00 2.87
646 647 7.921786 ACCTGTTTGATTTTATCGATTCTCA 57.078 32.000 1.71 0.00 0.00 3.27
647 648 7.978982 ACCTGTTTGATTTTATCGATTCTCAG 58.021 34.615 1.71 5.91 0.00 3.35
648 649 7.607991 ACCTGTTTGATTTTATCGATTCTCAGT 59.392 33.333 1.71 0.00 0.00 3.41
649 650 9.098355 CCTGTTTGATTTTATCGATTCTCAGTA 57.902 33.333 1.71 0.00 0.00 2.74
651 652 8.604035 TGTTTGATTTTATCGATTCTCAGTAGC 58.396 33.333 1.71 0.00 0.00 3.58
652 653 7.715265 TTGATTTTATCGATTCTCAGTAGCC 57.285 36.000 1.71 0.00 0.00 3.93
653 654 6.816136 TGATTTTATCGATTCTCAGTAGCCA 58.184 36.000 1.71 0.00 0.00 4.75
654 655 6.925718 TGATTTTATCGATTCTCAGTAGCCAG 59.074 38.462 1.71 0.00 0.00 4.85
655 656 2.810439 ATCGATTCTCAGTAGCCAGC 57.190 50.000 0.00 0.00 0.00 4.85
656 657 1.769026 TCGATTCTCAGTAGCCAGCT 58.231 50.000 0.00 0.00 0.00 4.24
657 658 2.103373 TCGATTCTCAGTAGCCAGCTT 58.897 47.619 0.00 0.00 0.00 3.74
658 659 2.159184 TCGATTCTCAGTAGCCAGCTTG 60.159 50.000 0.00 0.00 0.00 4.01
659 660 2.159184 CGATTCTCAGTAGCCAGCTTGA 60.159 50.000 0.00 0.00 0.00 3.02
660 661 2.751166 TTCTCAGTAGCCAGCTTGAC 57.249 50.000 0.00 0.00 0.00 3.18
661 662 1.930251 TCTCAGTAGCCAGCTTGACT 58.070 50.000 0.00 0.00 0.00 3.41
662 663 2.251818 TCTCAGTAGCCAGCTTGACTT 58.748 47.619 0.00 0.00 0.00 3.01
663 664 2.028658 TCTCAGTAGCCAGCTTGACTTG 60.029 50.000 0.00 0.00 0.00 3.16
664 665 1.970640 TCAGTAGCCAGCTTGACTTGA 59.029 47.619 0.00 0.00 0.00 3.02
665 666 2.072298 CAGTAGCCAGCTTGACTTGAC 58.928 52.381 0.00 0.00 0.00 3.18
666 667 1.974236 AGTAGCCAGCTTGACTTGACT 59.026 47.619 0.00 0.00 0.00 3.41
667 668 3.056536 CAGTAGCCAGCTTGACTTGACTA 60.057 47.826 0.00 0.00 0.00 2.59
668 669 2.758736 AGCCAGCTTGACTTGACTAG 57.241 50.000 0.00 0.00 0.00 2.57
669 670 1.082690 GCCAGCTTGACTTGACTAGC 58.917 55.000 0.00 0.00 38.49 3.42
670 671 1.609061 GCCAGCTTGACTTGACTAGCA 60.609 52.381 8.66 0.00 40.06 3.49
671 672 2.771089 CCAGCTTGACTTGACTAGCAA 58.229 47.619 8.66 0.00 40.06 3.91
672 673 2.481952 CCAGCTTGACTTGACTAGCAAC 59.518 50.000 8.66 0.00 40.06 4.17
673 674 2.156504 CAGCTTGACTTGACTAGCAACG 59.843 50.000 8.66 0.00 40.06 4.10
674 675 1.136224 GCTTGACTTGACTAGCAACGC 60.136 52.381 0.00 0.00 38.21 4.84
675 676 2.408050 CTTGACTTGACTAGCAACGCT 58.592 47.619 0.00 0.00 43.41 5.07
676 677 1.783284 TGACTTGACTAGCAACGCTG 58.217 50.000 0.00 0.00 40.10 5.18
685 686 4.100981 GCAACGCTGCTCTCTAGG 57.899 61.111 2.93 0.00 45.74 3.02
686 687 1.216710 GCAACGCTGCTCTCTAGGT 59.783 57.895 2.93 0.00 45.74 3.08
687 688 1.080995 GCAACGCTGCTCTCTAGGTG 61.081 60.000 2.93 0.00 45.74 4.00
688 689 0.244994 CAACGCTGCTCTCTAGGTGT 59.755 55.000 0.00 0.00 0.00 4.16
689 690 0.244994 AACGCTGCTCTCTAGGTGTG 59.755 55.000 0.00 0.00 0.00 3.82
690 691 0.609406 ACGCTGCTCTCTAGGTGTGA 60.609 55.000 0.00 0.00 0.00 3.58
691 692 0.100325 CGCTGCTCTCTAGGTGTGAG 59.900 60.000 0.00 0.00 38.81 3.51
692 693 0.459489 GCTGCTCTCTAGGTGTGAGG 59.541 60.000 0.00 0.00 36.94 3.86
693 694 1.846007 CTGCTCTCTAGGTGTGAGGT 58.154 55.000 0.00 0.00 36.94 3.85
694 695 1.748493 CTGCTCTCTAGGTGTGAGGTC 59.252 57.143 0.00 0.00 36.94 3.85
695 696 0.736053 GCTCTCTAGGTGTGAGGTCG 59.264 60.000 0.00 0.00 36.94 4.79
696 697 1.384525 CTCTCTAGGTGTGAGGTCGG 58.615 60.000 0.00 0.00 33.87 4.79
697 698 0.034380 TCTCTAGGTGTGAGGTCGGG 60.034 60.000 0.00 0.00 32.78 5.14
698 699 0.034380 CTCTAGGTGTGAGGTCGGGA 60.034 60.000 0.00 0.00 0.00 5.14
699 700 0.034380 TCTAGGTGTGAGGTCGGGAG 60.034 60.000 0.00 0.00 0.00 4.30
700 701 0.323542 CTAGGTGTGAGGTCGGGAGT 60.324 60.000 0.00 0.00 0.00 3.85
701 702 0.113776 TAGGTGTGAGGTCGGGAGTT 59.886 55.000 0.00 0.00 0.00 3.01
702 703 1.186267 AGGTGTGAGGTCGGGAGTTC 61.186 60.000 0.00 0.00 0.00 3.01
703 704 1.080705 GTGTGAGGTCGGGAGTTCG 60.081 63.158 0.00 0.00 0.00 3.95
704 705 1.228337 TGTGAGGTCGGGAGTTCGA 60.228 57.895 0.00 0.00 36.76 3.71
710 711 2.649034 TCGGGAGTTCGACTGCAC 59.351 61.111 8.31 0.00 38.40 4.57
711 712 2.197605 TCGGGAGTTCGACTGCACA 61.198 57.895 8.31 0.00 38.40 4.57
712 713 2.022129 CGGGAGTTCGACTGCACAC 61.022 63.158 8.31 0.00 38.40 3.82
713 714 1.668151 GGGAGTTCGACTGCACACC 60.668 63.158 8.31 1.77 38.40 4.16
714 715 1.069090 GGAGTTCGACTGCACACCA 59.931 57.895 0.00 0.00 36.49 4.17
716 717 1.560860 GAGTTCGACTGCACACCAGC 61.561 60.000 0.00 0.00 45.78 4.85
717 718 2.661537 TTCGACTGCACACCAGCG 60.662 61.111 0.00 0.00 45.78 5.18
720 721 2.048222 GACTGCACACCAGCGCTA 60.048 61.111 10.99 0.00 45.78 4.26
721 722 1.667830 GACTGCACACCAGCGCTAA 60.668 57.895 10.99 0.00 45.78 3.09
722 723 1.003355 ACTGCACACCAGCGCTAAT 60.003 52.632 10.99 0.00 45.78 1.73
723 724 0.249120 ACTGCACACCAGCGCTAATA 59.751 50.000 10.99 0.00 45.78 0.98
724 725 1.338674 ACTGCACACCAGCGCTAATAA 60.339 47.619 10.99 0.00 45.78 1.40
725 726 1.942657 CTGCACACCAGCGCTAATAAT 59.057 47.619 10.99 0.00 37.31 1.28
726 727 2.355756 CTGCACACCAGCGCTAATAATT 59.644 45.455 10.99 0.00 37.31 1.40
727 728 2.752354 TGCACACCAGCGCTAATAATTT 59.248 40.909 10.99 0.00 37.31 1.82
728 729 3.192422 TGCACACCAGCGCTAATAATTTT 59.808 39.130 10.99 0.00 37.31 1.82
729 730 3.547468 GCACACCAGCGCTAATAATTTTG 59.453 43.478 10.99 0.43 0.00 2.44
730 731 4.732784 CACACCAGCGCTAATAATTTTGT 58.267 39.130 10.99 1.48 0.00 2.83
731 732 4.558470 CACACCAGCGCTAATAATTTTGTG 59.442 41.667 10.99 10.60 0.00 3.33
732 733 4.457603 ACACCAGCGCTAATAATTTTGTGA 59.542 37.500 10.99 0.00 0.00 3.58
733 734 4.793216 CACCAGCGCTAATAATTTTGTGAC 59.207 41.667 10.99 0.00 0.00 3.67
734 735 4.457603 ACCAGCGCTAATAATTTTGTGACA 59.542 37.500 10.99 0.00 0.00 3.58
735 736 4.793216 CCAGCGCTAATAATTTTGTGACAC 59.207 41.667 10.99 0.00 0.00 3.67
736 737 5.391950 CCAGCGCTAATAATTTTGTGACACT 60.392 40.000 10.99 0.00 0.00 3.55
737 738 6.086222 CAGCGCTAATAATTTTGTGACACTT 58.914 36.000 10.99 0.00 0.00 3.16
738 739 6.582295 CAGCGCTAATAATTTTGTGACACTTT 59.418 34.615 10.99 0.00 0.00 2.66
739 740 7.114811 CAGCGCTAATAATTTTGTGACACTTTT 59.885 33.333 10.99 0.00 0.00 2.27
740 741 7.326063 AGCGCTAATAATTTTGTGACACTTTTC 59.674 33.333 8.99 0.00 0.00 2.29
741 742 7.114247 GCGCTAATAATTTTGTGACACTTTTCA 59.886 33.333 7.20 0.00 0.00 2.69
742 743 9.128107 CGCTAATAATTTTGTGACACTTTTCAT 57.872 29.630 7.20 0.00 0.00 2.57
746 747 6.826893 AATTTTGTGACACTTTTCATTCGG 57.173 33.333 7.20 0.00 0.00 4.30
747 748 4.974368 TTTGTGACACTTTTCATTCGGT 57.026 36.364 7.20 0.00 0.00 4.69
748 749 3.961477 TGTGACACTTTTCATTCGGTG 57.039 42.857 7.20 0.00 35.99 4.94
749 750 2.616376 TGTGACACTTTTCATTCGGTGG 59.384 45.455 7.20 0.00 34.42 4.61
750 751 1.606668 TGACACTTTTCATTCGGTGGC 59.393 47.619 0.00 0.00 38.12 5.01
751 752 1.606668 GACACTTTTCATTCGGTGGCA 59.393 47.619 0.00 0.00 37.62 4.92
752 753 1.608590 ACACTTTTCATTCGGTGGCAG 59.391 47.619 0.00 0.00 34.42 4.85
753 754 1.068333 CACTTTTCATTCGGTGGCAGG 60.068 52.381 0.00 0.00 0.00 4.85
754 755 1.247567 CTTTTCATTCGGTGGCAGGT 58.752 50.000 0.00 0.00 0.00 4.00
755 756 1.200020 CTTTTCATTCGGTGGCAGGTC 59.800 52.381 0.00 0.00 0.00 3.85
756 757 0.608035 TTTCATTCGGTGGCAGGTCC 60.608 55.000 0.00 0.00 0.00 4.46
757 758 1.773856 TTCATTCGGTGGCAGGTCCA 61.774 55.000 0.00 0.00 44.18 4.02
764 765 3.169378 TGGCAGGTCCATGAAGCA 58.831 55.556 0.00 0.00 40.72 3.91
765 766 1.459812 TGGCAGGTCCATGAAGCAA 59.540 52.632 0.00 0.00 40.72 3.91
766 767 0.178967 TGGCAGGTCCATGAAGCAAA 60.179 50.000 0.00 0.00 40.72 3.68
767 768 0.529378 GGCAGGTCCATGAAGCAAAG 59.471 55.000 0.00 0.00 34.01 2.77
768 769 0.529378 GCAGGTCCATGAAGCAAAGG 59.471 55.000 0.00 0.00 0.00 3.11
769 770 1.180029 CAGGTCCATGAAGCAAAGGG 58.820 55.000 0.00 0.00 0.00 3.95
770 771 0.779997 AGGTCCATGAAGCAAAGGGT 59.220 50.000 0.00 0.00 0.00 4.34
771 772 1.177401 GGTCCATGAAGCAAAGGGTC 58.823 55.000 0.00 0.00 0.00 4.46
772 773 1.177401 GTCCATGAAGCAAAGGGTCC 58.823 55.000 0.00 0.00 0.00 4.46
773 774 0.039618 TCCATGAAGCAAAGGGTCCC 59.960 55.000 0.00 0.00 0.00 4.46
774 775 1.315257 CCATGAAGCAAAGGGTCCCG 61.315 60.000 0.99 0.00 0.00 5.14
775 776 0.609131 CATGAAGCAAAGGGTCCCGT 60.609 55.000 0.99 0.00 0.00 5.28
776 777 0.988832 ATGAAGCAAAGGGTCCCGTA 59.011 50.000 0.99 0.00 0.00 4.02
777 778 0.323629 TGAAGCAAAGGGTCCCGTAG 59.676 55.000 0.99 0.00 0.00 3.51
791 792 2.134092 CGTAGGGTGGAAGGATCCC 58.866 63.158 8.55 0.00 45.95 3.85
792 793 1.745320 CGTAGGGTGGAAGGATCCCG 61.745 65.000 8.55 0.00 45.95 5.14
793 794 0.690077 GTAGGGTGGAAGGATCCCGT 60.690 60.000 8.55 0.00 45.95 5.28
794 795 0.935942 TAGGGTGGAAGGATCCCGTA 59.064 55.000 8.55 0.00 45.95 4.02
795 796 0.398664 AGGGTGGAAGGATCCCGTAG 60.399 60.000 8.55 0.00 45.95 3.51
865 866 1.481871 TTCGGAGGCGATTAGGTCTT 58.518 50.000 0.00 0.00 0.00 3.01
876 877 0.034186 TTAGGTCTTCGGCGTCCCTA 60.034 55.000 6.85 9.41 0.00 3.53
897 898 1.008309 CTTCGTCTAGCGCTAGCCC 60.008 63.158 34.65 25.79 46.67 5.19
898 899 2.718993 CTTCGTCTAGCGCTAGCCCG 62.719 65.000 34.65 33.43 46.67 6.13
899 900 3.584052 CGTCTAGCGCTAGCCCGT 61.584 66.667 34.65 3.71 46.67 5.28
903 904 3.122250 CTAGCGCTAGCCCGTCGTT 62.122 63.158 30.06 0.00 46.67 3.85
906 907 2.278013 CGCTAGCCCGTCGTTCTC 60.278 66.667 9.66 0.00 0.00 2.87
917 918 2.356386 GTCGTTCTCGTCGAGATCTC 57.644 55.000 24.78 13.05 38.56 2.75
964 965 1.002544 CTGTTCTCTGTCCCTTGTCCC 59.997 57.143 0.00 0.00 0.00 4.46
997 998 3.995506 GAGCCCATCCCAACCCACG 62.996 68.421 0.00 0.00 0.00 4.94
1015 1016 2.950172 GAAACAGCCTTTCGCGCGA 61.950 57.895 31.40 31.40 44.76 5.87
1032 1033 3.445518 GATCTGGGGCGTGCGATCA 62.446 63.158 0.00 0.00 34.04 2.92
1059 1060 2.044758 ACCAAAACCCTAGACGTGACT 58.955 47.619 0.00 0.00 0.00 3.41
1065 1066 3.430042 ACCCTAGACGTGACTAGACAA 57.570 47.619 11.78 0.00 41.42 3.18
1068 1069 4.019860 ACCCTAGACGTGACTAGACAACTA 60.020 45.833 11.78 1.39 41.42 2.24
1069 1070 4.332268 CCCTAGACGTGACTAGACAACTAC 59.668 50.000 11.78 0.00 41.42 2.73
1082 1083 5.317733 AGACAACTACGAAGATGGAGAAG 57.682 43.478 0.00 0.00 30.07 2.85
1087 1088 4.282496 ACTACGAAGATGGAGAAGATGGT 58.718 43.478 0.00 0.00 0.00 3.55
1098 1320 3.951769 AAGATGGTGGGGCTGCTGC 62.952 63.158 7.10 7.10 38.76 5.25
1133 1355 1.045911 CGGAGGAAGAGAGGAAGGGG 61.046 65.000 0.00 0.00 0.00 4.79
1157 1379 1.117994 AGATCAGGAGAGATGCGCAA 58.882 50.000 17.11 0.00 0.00 4.85
1174 1396 2.163509 GCAAGGAAAAGGGAAGGAGAC 58.836 52.381 0.00 0.00 0.00 3.36
1208 1430 1.866015 TCGGGAAGGTCATGTCAGAT 58.134 50.000 0.00 0.00 0.00 2.90
1210 1432 3.576861 TCGGGAAGGTCATGTCAGATAT 58.423 45.455 0.00 0.00 0.00 1.63
1333 1555 2.045047 TCTTCAACCAGGAGAGGGAGAT 59.955 50.000 0.00 0.00 0.00 2.75
1377 1599 1.864711 CGTGGATGTTTGACAACGACT 59.135 47.619 0.00 0.00 33.20 4.18
1416 1638 4.098960 AGTTTGTATCGAGGAAGCGGATTA 59.901 41.667 0.00 0.00 0.00 1.75
1427 1649 6.128795 CGAGGAAGCGGATTAAAGATTATGAC 60.129 42.308 0.00 0.00 0.00 3.06
1448 1670 7.831691 TGACTTCAAGGAAATACCAATTTGA 57.168 32.000 0.00 0.00 42.04 2.69
1470 1692 2.517998 TAGGGTTTATGGGTTGCCAC 57.482 50.000 0.00 0.00 0.00 5.01
1475 1697 0.485099 TTTATGGGTTGCCACTGGGT 59.515 50.000 0.00 0.00 36.17 4.51
1494 1716 5.215845 TGGGTGATATGGATGAAGACACTA 58.784 41.667 0.00 0.00 0.00 2.74
1555 1777 2.103094 CTGATACTGGAGCGGATGGAAA 59.897 50.000 0.00 0.00 0.00 3.13
1559 1781 2.262774 CTGGAGCGGATGGAAAGGCT 62.263 60.000 0.00 0.00 38.70 4.58
1588 1810 6.341316 GCAAATATCTCAGAGTGAAGGTACA 58.659 40.000 0.00 0.00 0.00 2.90
1684 1906 0.825010 GATAACCGGGTAGAGGCGGA 60.825 60.000 4.99 0.00 0.00 5.54
1703 1925 1.899142 GACAAGAGGCCAGAGAAGAGT 59.101 52.381 5.01 0.00 0.00 3.24
1727 1949 0.719015 ATGAGGAGGAGAAGGACCCA 59.281 55.000 0.00 0.00 0.00 4.51
1748 1970 4.381398 CCATGGTGCCGTTTTGAATATGAA 60.381 41.667 2.57 0.00 0.00 2.57
1766 1988 8.854614 AATATGAATACCTACCAGATCTTTGC 57.145 34.615 0.00 0.00 0.00 3.68
1774 1996 6.136857 ACCTACCAGATCTTTGCTACATCTA 58.863 40.000 0.00 0.00 0.00 1.98
1777 1999 4.645136 ACCAGATCTTTGCTACATCTACGA 59.355 41.667 0.00 0.00 0.00 3.43
1833 2055 5.087323 TCAAGCTTAAGAAAGGAGAGAGGA 58.913 41.667 6.67 0.00 32.98 3.71
1861 2083 1.146263 GTAGGTGGATGAAGGCGGG 59.854 63.158 0.00 0.00 0.00 6.13
1889 2111 3.615811 AGGAGAGGAGGGGTGCCA 61.616 66.667 0.00 0.00 0.00 4.92
1935 2157 2.031163 GCAGCAGTGGGAGTCGTT 59.969 61.111 0.00 0.00 0.00 3.85
1952 2174 0.249031 GTTCATATGGCTTTGGGCGC 60.249 55.000 0.00 0.00 42.94 6.53
1997 2219 4.285863 ACAGTCTATCTTGGAGGAAGGAG 58.714 47.826 0.00 0.00 31.85 3.69
2009 2231 1.306568 GAAGGAGGGGAGCAGGTCT 60.307 63.158 0.00 0.00 0.00 3.85
2012 2234 2.284995 GAGGGGAGCAGGTCTGGT 60.285 66.667 2.02 2.02 44.89 4.00
2035 2257 2.291043 GGGGCGAAGTGGAGAAGGA 61.291 63.158 0.00 0.00 0.00 3.36
2087 2309 1.307084 GGCTGGGAGTAAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
2119 2341 3.733337 AGATCACTTTCAGCGACAAAGT 58.267 40.909 0.00 5.25 43.46 2.66
2163 2385 1.202927 CCACACCAAAGGACATGGAGT 60.203 52.381 0.00 0.00 41.60 3.85
2165 2387 2.958355 CACACCAAAGGACATGGAGTTT 59.042 45.455 0.00 0.00 39.34 2.66
2180 2402 2.306847 GAGTTTCAGGAAAAGGGTGCA 58.693 47.619 0.00 0.00 31.33 4.57
2191 2413 1.075601 AAGGGTGCAATGAAGGAGGA 58.924 50.000 0.00 0.00 0.00 3.71
2200 2422 2.041265 GAAGGAGGAGGCTGGGGA 59.959 66.667 0.00 0.00 0.00 4.81
2257 2479 1.363246 GAAGAGAAGGGGAAGGGTGT 58.637 55.000 0.00 0.00 0.00 4.16
2262 2484 0.771755 GAAGGGGAAGGGTGTGAAGT 59.228 55.000 0.00 0.00 0.00 3.01
2280 2502 2.783135 AGTTGACCATGACGCAGAAAT 58.217 42.857 0.00 0.00 0.00 2.17
2288 2510 3.189287 CCATGACGCAGAAATATAAGGGC 59.811 47.826 0.00 0.00 0.00 5.19
2296 2518 4.503296 GCAGAAATATAAGGGCGAGAAGGA 60.503 45.833 0.00 0.00 0.00 3.36
2297 2519 5.233988 CAGAAATATAAGGGCGAGAAGGAG 58.766 45.833 0.00 0.00 0.00 3.69
2314 2536 2.524875 AGGAGGGTAAAGATAGGGAGCT 59.475 50.000 0.00 0.00 0.00 4.09
2337 2559 2.021208 GCAAATTCAGGAGGAGGGAGC 61.021 57.143 0.00 0.00 0.00 4.70
2347 2569 4.200283 GAGGGAGCGAGCACGGAG 62.200 72.222 5.52 0.00 40.15 4.63
2427 2649 0.184933 CGGAGGAGGAGATGGAGACT 59.815 60.000 0.00 0.00 0.00 3.24
2459 2681 5.227908 CAGGTCAGCTAAAAGAGAACGTAA 58.772 41.667 0.00 0.00 0.00 3.18
2523 2745 3.395702 AACACATCGGCCGGGCTA 61.396 61.111 27.83 16.72 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.065204 CAGAAAACGGGAAAAATGGAAGAAAAA 59.935 33.333 0.00 0.00 0.00 1.94
29 30 6.536941 CAGAAAACGGGAAAAATGGAAGAAAA 59.463 34.615 0.00 0.00 0.00 2.29
30 31 6.045955 CAGAAAACGGGAAAAATGGAAGAAA 58.954 36.000 0.00 0.00 0.00 2.52
31 32 5.128008 ACAGAAAACGGGAAAAATGGAAGAA 59.872 36.000 0.00 0.00 0.00 2.52
32 33 4.647399 ACAGAAAACGGGAAAAATGGAAGA 59.353 37.500 0.00 0.00 0.00 2.87
33 34 4.944048 ACAGAAAACGGGAAAAATGGAAG 58.056 39.130 0.00 0.00 0.00 3.46
34 35 5.112686 CAACAGAAAACGGGAAAAATGGAA 58.887 37.500 0.00 0.00 0.00 3.53
35 36 4.688021 CAACAGAAAACGGGAAAAATGGA 58.312 39.130 0.00 0.00 0.00 3.41
36 37 3.247411 GCAACAGAAAACGGGAAAAATGG 59.753 43.478 0.00 0.00 0.00 3.16
37 38 3.060607 CGCAACAGAAAACGGGAAAAATG 60.061 43.478 0.00 0.00 0.00 2.32
38 39 3.120041 CGCAACAGAAAACGGGAAAAAT 58.880 40.909 0.00 0.00 0.00 1.82
39 40 2.094649 ACGCAACAGAAAACGGGAAAAA 60.095 40.909 0.00 0.00 0.00 1.94
40 41 1.473278 ACGCAACAGAAAACGGGAAAA 59.527 42.857 0.00 0.00 0.00 2.29
41 42 1.096416 ACGCAACAGAAAACGGGAAA 58.904 45.000 0.00 0.00 0.00 3.13
42 43 0.378962 CACGCAACAGAAAACGGGAA 59.621 50.000 0.00 0.00 0.00 3.97
43 44 0.745128 ACACGCAACAGAAAACGGGA 60.745 50.000 0.00 0.00 32.15 5.14
44 45 0.099791 AACACGCAACAGAAAACGGG 59.900 50.000 0.00 0.00 34.45 5.28
45 46 1.902840 AAACACGCAACAGAAAACGG 58.097 45.000 0.00 0.00 0.00 4.44
46 47 3.963340 AAAAACACGCAACAGAAAACG 57.037 38.095 0.00 0.00 0.00 3.60
68 69 9.684448 GGAAAACCTAATCTGAAAAAGAGAAAG 57.316 33.333 0.00 0.00 38.67 2.62
69 70 9.421399 AGGAAAACCTAATCTGAAAAAGAGAAA 57.579 29.630 0.00 0.00 38.67 2.52
70 71 8.996651 AGGAAAACCTAATCTGAAAAAGAGAA 57.003 30.769 0.00 0.00 38.67 2.87
71 72 8.996651 AAGGAAAACCTAATCTGAAAAAGAGA 57.003 30.769 0.00 0.00 38.67 3.10
73 74 8.780249 CGTAAGGAAAACCTAATCTGAAAAAGA 58.220 33.333 0.00 0.00 39.94 2.52
74 75 8.950403 CGTAAGGAAAACCTAATCTGAAAAAG 57.050 34.615 0.00 0.00 0.00 2.27
148 149 4.117685 ACACGGAGAACTCTTTGTGTAAC 58.882 43.478 18.24 0.00 38.02 2.50
149 150 4.395959 ACACGGAGAACTCTTTGTGTAA 57.604 40.909 18.24 0.00 38.02 2.41
150 151 5.717078 ATACACGGAGAACTCTTTGTGTA 57.283 39.130 22.70 22.70 41.59 2.90
151 152 2.981859 ACACGGAGAACTCTTTGTGT 57.018 45.000 15.88 15.88 36.44 3.72
152 153 6.390987 GTAATACACGGAGAACTCTTTGTG 57.609 41.667 14.38 14.71 35.21 3.33
228 229 9.425893 CGCTGAAGATTAGTTAAATACACAATG 57.574 33.333 0.00 0.00 0.00 2.82
229 230 9.162764 ACGCTGAAGATTAGTTAAATACACAAT 57.837 29.630 0.00 0.00 0.00 2.71
230 231 8.542497 ACGCTGAAGATTAGTTAAATACACAA 57.458 30.769 0.00 0.00 0.00 3.33
231 232 9.811995 ATACGCTGAAGATTAGTTAAATACACA 57.188 29.630 0.00 0.00 0.00 3.72
240 241 8.942338 TTTGTGATATACGCTGAAGATTAGTT 57.058 30.769 0.00 0.00 0.00 2.24
241 242 8.942338 TTTTGTGATATACGCTGAAGATTAGT 57.058 30.769 0.00 0.00 0.00 2.24
244 245 8.677300 ACATTTTTGTGATATACGCTGAAGATT 58.323 29.630 0.00 0.00 0.00 2.40
245 246 8.213518 ACATTTTTGTGATATACGCTGAAGAT 57.786 30.769 0.00 0.00 0.00 2.40
246 247 7.609760 ACATTTTTGTGATATACGCTGAAGA 57.390 32.000 0.00 0.00 0.00 2.87
247 248 7.962373 TGAACATTTTTGTGATATACGCTGAAG 59.038 33.333 0.00 0.00 0.00 3.02
248 249 7.811653 TGAACATTTTTGTGATATACGCTGAA 58.188 30.769 0.00 0.00 0.00 3.02
249 250 7.371126 TGAACATTTTTGTGATATACGCTGA 57.629 32.000 0.00 0.00 0.00 4.26
250 251 8.525876 CATTGAACATTTTTGTGATATACGCTG 58.474 33.333 0.00 0.00 0.00 5.18
251 252 8.243426 ACATTGAACATTTTTGTGATATACGCT 58.757 29.630 0.00 0.00 0.00 5.07
252 253 8.313227 CACATTGAACATTTTTGTGATATACGC 58.687 33.333 0.00 0.00 39.98 4.42
253 254 9.340695 ACACATTGAACATTTTTGTGATATACG 57.659 29.630 8.22 0.00 39.98 3.06
259 260 9.591792 TCAAATACACATTGAACATTTTTGTGA 57.408 25.926 8.22 0.00 39.98 3.58
315 316 9.190858 GCTGAACAATTATTACACAAACATTGA 57.809 29.630 0.00 0.00 0.00 2.57
316 317 8.155294 CGCTGAACAATTATTACACAAACATTG 58.845 33.333 0.00 0.00 0.00 2.82
317 318 7.865385 ACGCTGAACAATTATTACACAAACATT 59.135 29.630 0.00 0.00 0.00 2.71
318 319 7.367285 ACGCTGAACAATTATTACACAAACAT 58.633 30.769 0.00 0.00 0.00 2.71
319 320 6.730175 ACGCTGAACAATTATTACACAAACA 58.270 32.000 0.00 0.00 0.00 2.83
320 321 8.889849 ATACGCTGAACAATTATTACACAAAC 57.110 30.769 0.00 0.00 0.00 2.93
321 322 9.976255 GTATACGCTGAACAATTATTACACAAA 57.024 29.630 0.00 0.00 0.00 2.83
322 323 9.152595 TGTATACGCTGAACAATTATTACACAA 57.847 29.630 0.00 0.00 0.00 3.33
323 324 8.705048 TGTATACGCTGAACAATTATTACACA 57.295 30.769 0.00 0.00 0.00 3.72
324 325 9.976255 TTTGTATACGCTGAACAATTATTACAC 57.024 29.630 0.00 0.00 33.44 2.90
329 330 9.502145 CATGTTTTGTATACGCTGAACAATTAT 57.498 29.630 13.47 0.79 33.44 1.28
330 331 8.508062 ACATGTTTTGTATACGCTGAACAATTA 58.492 29.630 13.47 0.00 36.57 1.40
331 332 7.367285 ACATGTTTTGTATACGCTGAACAATT 58.633 30.769 13.47 5.18 36.57 2.32
332 333 6.908825 ACATGTTTTGTATACGCTGAACAAT 58.091 32.000 13.47 6.24 36.57 2.71
333 334 6.307031 ACATGTTTTGTATACGCTGAACAA 57.693 33.333 13.47 0.00 36.57 2.83
334 335 5.933187 ACATGTTTTGTATACGCTGAACA 57.067 34.783 12.45 12.45 36.57 3.18
335 336 6.367421 TGAACATGTTTTGTATACGCTGAAC 58.633 36.000 13.36 1.71 37.68 3.18
336 337 6.546972 TGAACATGTTTTGTATACGCTGAA 57.453 33.333 13.36 0.00 37.68 3.02
337 338 6.546972 TTGAACATGTTTTGTATACGCTGA 57.453 33.333 13.36 0.00 37.68 4.26
338 339 6.801377 ACATTGAACATGTTTTGTATACGCTG 59.199 34.615 13.36 2.61 37.68 5.18
339 340 6.908825 ACATTGAACATGTTTTGTATACGCT 58.091 32.000 13.36 0.00 37.68 5.07
340 341 8.835467 ATACATTGAACATGTTTTGTATACGC 57.165 30.769 25.51 9.75 37.68 4.42
421 422 9.804758 ACACGAACACCATTTTAAAATTCTAAA 57.195 25.926 10.77 0.00 0.00 1.85
424 425 9.974980 AATACACGAACACCATTTTAAAATTCT 57.025 25.926 10.77 0.00 0.00 2.40
427 428 9.751542 TGAAATACACGAACACCATTTTAAAAT 57.248 25.926 7.64 7.64 0.00 1.82
428 429 9.239002 CTGAAATACACGAACACCATTTTAAAA 57.761 29.630 2.51 2.51 0.00 1.52
429 430 8.407064 ACTGAAATACACGAACACCATTTTAAA 58.593 29.630 0.00 0.00 0.00 1.52
430 431 7.858382 CACTGAAATACACGAACACCATTTTAA 59.142 33.333 0.00 0.00 0.00 1.52
431 432 7.012515 ACACTGAAATACACGAACACCATTTTA 59.987 33.333 0.00 0.00 0.00 1.52
432 433 6.183360 ACACTGAAATACACGAACACCATTTT 60.183 34.615 0.00 0.00 0.00 1.82
433 434 5.298276 ACACTGAAATACACGAACACCATTT 59.702 36.000 0.00 0.00 0.00 2.32
434 435 4.819630 ACACTGAAATACACGAACACCATT 59.180 37.500 0.00 0.00 0.00 3.16
435 436 4.385825 ACACTGAAATACACGAACACCAT 58.614 39.130 0.00 0.00 0.00 3.55
436 437 3.799366 ACACTGAAATACACGAACACCA 58.201 40.909 0.00 0.00 0.00 4.17
437 438 4.806342 AACACTGAAATACACGAACACC 57.194 40.909 0.00 0.00 0.00 4.16
438 439 5.565695 ACAAACACTGAAATACACGAACAC 58.434 37.500 0.00 0.00 0.00 3.32
439 440 5.804692 ACAAACACTGAAATACACGAACA 57.195 34.783 0.00 0.00 0.00 3.18
440 441 6.252281 TGAACAAACACTGAAATACACGAAC 58.748 36.000 0.00 0.00 0.00 3.95
441 442 6.424176 TGAACAAACACTGAAATACACGAA 57.576 33.333 0.00 0.00 0.00 3.85
442 443 6.612247 ATGAACAAACACTGAAATACACGA 57.388 33.333 0.00 0.00 0.00 4.35
443 444 7.678194 AAATGAACAAACACTGAAATACACG 57.322 32.000 0.00 0.00 0.00 4.49
495 496 7.721286 TGAGCAACTTTTGAAACTTGAAAAA 57.279 28.000 0.00 0.00 0.00 1.94
496 497 7.601886 TCATGAGCAACTTTTGAAACTTGAAAA 59.398 29.630 0.00 0.00 0.00 2.29
497 498 7.095910 TCATGAGCAACTTTTGAAACTTGAAA 58.904 30.769 0.00 0.00 0.00 2.69
498 499 6.629128 TCATGAGCAACTTTTGAAACTTGAA 58.371 32.000 0.00 0.00 0.00 2.69
499 500 6.206395 TCATGAGCAACTTTTGAAACTTGA 57.794 33.333 0.00 0.00 0.00 3.02
500 501 7.473027 AATCATGAGCAACTTTTGAAACTTG 57.527 32.000 0.09 0.00 0.00 3.16
501 502 8.496707 AAAATCATGAGCAACTTTTGAAACTT 57.503 26.923 0.09 0.00 0.00 2.66
502 503 8.496707 AAAAATCATGAGCAACTTTTGAAACT 57.503 26.923 0.09 0.00 0.00 2.66
503 504 8.389603 TGAAAAATCATGAGCAACTTTTGAAAC 58.610 29.630 0.09 0.00 0.00 2.78
504 505 8.489990 TGAAAAATCATGAGCAACTTTTGAAA 57.510 26.923 0.09 0.00 0.00 2.69
505 506 8.489990 TTGAAAAATCATGAGCAACTTTTGAA 57.510 26.923 0.09 0.57 0.00 2.69
506 507 8.389603 GTTTGAAAAATCATGAGCAACTTTTGA 58.610 29.630 0.09 0.00 0.00 2.69
507 508 8.176365 TGTTTGAAAAATCATGAGCAACTTTTG 58.824 29.630 0.09 0.00 0.00 2.44
508 509 8.266392 TGTTTGAAAAATCATGAGCAACTTTT 57.734 26.923 0.09 0.00 0.00 2.27
509 510 7.846644 TGTTTGAAAAATCATGAGCAACTTT 57.153 28.000 0.09 0.00 0.00 2.66
510 511 8.441312 AATGTTTGAAAAATCATGAGCAACTT 57.559 26.923 0.09 0.00 0.00 2.66
511 512 9.715121 ATAATGTTTGAAAAATCATGAGCAACT 57.285 25.926 0.09 0.00 0.00 3.16
514 515 9.708092 TGAATAATGTTTGAAAAATCATGAGCA 57.292 25.926 0.09 0.00 0.00 4.26
515 516 9.962759 GTGAATAATGTTTGAAAAATCATGAGC 57.037 29.630 0.09 0.00 0.00 4.26
588 589 6.128526 CGGCAGGTCTGTTTTTGTTTTAAAAA 60.129 34.615 1.31 0.00 0.00 1.94
589 590 5.348997 CGGCAGGTCTGTTTTTGTTTTAAAA 59.651 36.000 0.00 0.00 0.00 1.52
590 591 4.865365 CGGCAGGTCTGTTTTTGTTTTAAA 59.135 37.500 0.00 0.00 0.00 1.52
591 592 4.082136 ACGGCAGGTCTGTTTTTGTTTTAA 60.082 37.500 0.00 0.00 0.00 1.52
592 593 3.444388 ACGGCAGGTCTGTTTTTGTTTTA 59.556 39.130 0.00 0.00 0.00 1.52
593 594 2.232696 ACGGCAGGTCTGTTTTTGTTTT 59.767 40.909 0.00 0.00 0.00 2.43
594 595 1.822371 ACGGCAGGTCTGTTTTTGTTT 59.178 42.857 0.00 0.00 0.00 2.83
595 596 1.470051 ACGGCAGGTCTGTTTTTGTT 58.530 45.000 0.00 0.00 0.00 2.83
596 597 1.404035 GAACGGCAGGTCTGTTTTTGT 59.596 47.619 0.00 0.00 43.99 2.83
597 598 1.403679 TGAACGGCAGGTCTGTTTTTG 59.596 47.619 2.92 0.00 43.99 2.44
598 599 1.676006 CTGAACGGCAGGTCTGTTTTT 59.324 47.619 2.92 0.00 43.99 1.94
599 600 1.308998 CTGAACGGCAGGTCTGTTTT 58.691 50.000 2.92 0.00 43.99 2.43
600 601 1.166531 GCTGAACGGCAGGTCTGTTT 61.167 55.000 10.23 0.00 43.99 2.83
601 602 1.598130 GCTGAACGGCAGGTCTGTT 60.598 57.895 10.23 0.00 46.49 3.16
602 603 2.031163 GCTGAACGGCAGGTCTGT 59.969 61.111 10.23 0.00 45.03 3.41
607 608 1.021390 CAGGTAAGCTGAACGGCAGG 61.021 60.000 8.34 0.00 45.03 4.85
609 610 0.107831 AACAGGTAAGCTGAACGGCA 59.892 50.000 8.34 0.00 34.17 5.69
610 611 1.069227 CAAACAGGTAAGCTGAACGGC 60.069 52.381 0.00 0.00 0.00 5.68
611 612 2.489971 TCAAACAGGTAAGCTGAACGG 58.510 47.619 0.00 0.00 0.00 4.44
612 613 4.749245 AATCAAACAGGTAAGCTGAACG 57.251 40.909 0.00 0.00 0.00 3.95
613 614 7.481798 CGATAAAATCAAACAGGTAAGCTGAAC 59.518 37.037 0.00 0.00 0.00 3.18
614 615 7.389330 TCGATAAAATCAAACAGGTAAGCTGAA 59.611 33.333 0.00 0.00 0.00 3.02
615 616 6.876789 TCGATAAAATCAAACAGGTAAGCTGA 59.123 34.615 0.00 0.00 0.00 4.26
616 617 7.072177 TCGATAAAATCAAACAGGTAAGCTG 57.928 36.000 0.00 0.00 0.00 4.24
617 618 7.865706 ATCGATAAAATCAAACAGGTAAGCT 57.134 32.000 0.00 0.00 0.00 3.74
618 619 8.398665 AGAATCGATAAAATCAAACAGGTAAGC 58.601 33.333 0.00 0.00 0.00 3.09
619 620 9.922305 GAGAATCGATAAAATCAAACAGGTAAG 57.078 33.333 0.00 0.00 0.00 2.34
620 621 9.443323 TGAGAATCGATAAAATCAAACAGGTAA 57.557 29.630 0.00 0.00 38.61 2.85
621 622 9.098355 CTGAGAATCGATAAAATCAAACAGGTA 57.902 33.333 0.00 0.00 38.61 3.08
622 623 7.607991 ACTGAGAATCGATAAAATCAAACAGGT 59.392 33.333 0.00 0.00 38.61 4.00
623 624 7.978982 ACTGAGAATCGATAAAATCAAACAGG 58.021 34.615 0.00 0.00 38.61 4.00
625 626 8.604035 GCTACTGAGAATCGATAAAATCAAACA 58.396 33.333 0.00 0.00 38.61 2.83
626 627 8.064814 GGCTACTGAGAATCGATAAAATCAAAC 58.935 37.037 0.00 0.00 38.61 2.93
627 628 7.768582 TGGCTACTGAGAATCGATAAAATCAAA 59.231 33.333 0.00 0.00 38.61 2.69
628 629 7.272244 TGGCTACTGAGAATCGATAAAATCAA 58.728 34.615 0.00 0.00 38.61 2.57
629 630 6.816136 TGGCTACTGAGAATCGATAAAATCA 58.184 36.000 0.00 0.03 38.61 2.57
630 631 6.128688 GCTGGCTACTGAGAATCGATAAAATC 60.129 42.308 0.00 0.00 38.61 2.17
631 632 5.698545 GCTGGCTACTGAGAATCGATAAAAT 59.301 40.000 0.00 0.00 38.61 1.82
632 633 5.050490 GCTGGCTACTGAGAATCGATAAAA 58.950 41.667 0.00 0.00 38.61 1.52
633 634 4.342378 AGCTGGCTACTGAGAATCGATAAA 59.658 41.667 0.00 0.00 38.61 1.40
634 635 3.891977 AGCTGGCTACTGAGAATCGATAA 59.108 43.478 0.00 0.00 38.61 1.75
635 636 3.491342 AGCTGGCTACTGAGAATCGATA 58.509 45.455 0.00 0.00 38.61 2.92
636 637 2.315176 AGCTGGCTACTGAGAATCGAT 58.685 47.619 0.00 0.00 38.61 3.59
637 638 1.769026 AGCTGGCTACTGAGAATCGA 58.231 50.000 0.00 0.00 38.61 3.59
638 639 2.159184 TCAAGCTGGCTACTGAGAATCG 60.159 50.000 0.00 0.00 38.61 3.34
639 640 3.118811 AGTCAAGCTGGCTACTGAGAATC 60.119 47.826 0.00 0.00 25.47 2.52
640 641 2.836981 AGTCAAGCTGGCTACTGAGAAT 59.163 45.455 0.00 0.00 25.47 2.40
641 642 2.251818 AGTCAAGCTGGCTACTGAGAA 58.748 47.619 0.00 0.00 25.47 2.87
642 643 1.930251 AGTCAAGCTGGCTACTGAGA 58.070 50.000 0.00 0.00 25.47 3.27
643 644 2.028658 TCAAGTCAAGCTGGCTACTGAG 60.029 50.000 0.00 0.00 28.54 3.35
644 645 1.970640 TCAAGTCAAGCTGGCTACTGA 59.029 47.619 0.00 0.00 28.54 3.41
645 646 2.072298 GTCAAGTCAAGCTGGCTACTG 58.928 52.381 0.00 0.00 28.54 2.74
646 647 1.974236 AGTCAAGTCAAGCTGGCTACT 59.026 47.619 0.00 0.00 28.54 2.57
647 648 2.464157 AGTCAAGTCAAGCTGGCTAC 57.536 50.000 0.00 0.00 28.54 3.58
648 649 2.093973 GCTAGTCAAGTCAAGCTGGCTA 60.094 50.000 0.00 0.00 28.54 3.93
649 650 1.338579 GCTAGTCAAGTCAAGCTGGCT 60.339 52.381 0.00 0.00 30.81 4.75
650 651 1.082690 GCTAGTCAAGTCAAGCTGGC 58.917 55.000 0.00 0.00 32.18 4.85
651 652 2.462456 TGCTAGTCAAGTCAAGCTGG 57.538 50.000 0.00 0.00 35.95 4.85
652 653 2.156504 CGTTGCTAGTCAAGTCAAGCTG 59.843 50.000 0.00 0.00 34.91 4.24
653 654 2.408050 CGTTGCTAGTCAAGTCAAGCT 58.592 47.619 0.60 0.00 34.91 3.74
654 655 1.136224 GCGTTGCTAGTCAAGTCAAGC 60.136 52.381 0.60 0.00 34.91 4.01
655 656 2.156504 CAGCGTTGCTAGTCAAGTCAAG 59.843 50.000 0.00 0.00 36.40 3.02
656 657 2.135139 CAGCGTTGCTAGTCAAGTCAA 58.865 47.619 0.00 0.00 36.40 3.18
657 658 1.783284 CAGCGTTGCTAGTCAAGTCA 58.217 50.000 0.00 0.00 36.40 3.41
658 659 0.440371 GCAGCGTTGCTAGTCAAGTC 59.560 55.000 17.71 0.00 46.95 3.01
659 660 2.533318 GCAGCGTTGCTAGTCAAGT 58.467 52.632 17.71 0.00 46.95 3.16
669 670 0.244994 ACACCTAGAGAGCAGCGTTG 59.755 55.000 0.00 0.00 0.00 4.10
670 671 0.244994 CACACCTAGAGAGCAGCGTT 59.755 55.000 0.00 0.00 0.00 4.84
671 672 0.609406 TCACACCTAGAGAGCAGCGT 60.609 55.000 0.00 0.00 0.00 5.07
672 673 0.100325 CTCACACCTAGAGAGCAGCG 59.900 60.000 0.00 0.00 35.09 5.18
673 674 0.459489 CCTCACACCTAGAGAGCAGC 59.541 60.000 0.00 0.00 34.08 5.25
674 675 1.748493 GACCTCACACCTAGAGAGCAG 59.252 57.143 0.00 0.00 34.08 4.24
675 676 1.840737 GACCTCACACCTAGAGAGCA 58.159 55.000 0.00 0.00 34.08 4.26
676 677 0.736053 CGACCTCACACCTAGAGAGC 59.264 60.000 0.00 0.00 34.08 4.09
677 678 1.384525 CCGACCTCACACCTAGAGAG 58.615 60.000 0.00 0.00 35.09 3.20
678 679 0.034380 CCCGACCTCACACCTAGAGA 60.034 60.000 0.00 0.00 35.09 3.10
679 680 0.034380 TCCCGACCTCACACCTAGAG 60.034 60.000 0.00 0.00 0.00 2.43
680 681 0.034380 CTCCCGACCTCACACCTAGA 60.034 60.000 0.00 0.00 0.00 2.43
681 682 0.323542 ACTCCCGACCTCACACCTAG 60.324 60.000 0.00 0.00 0.00 3.02
682 683 0.113776 AACTCCCGACCTCACACCTA 59.886 55.000 0.00 0.00 0.00 3.08
683 684 1.152312 AACTCCCGACCTCACACCT 60.152 57.895 0.00 0.00 0.00 4.00
684 685 1.292541 GAACTCCCGACCTCACACC 59.707 63.158 0.00 0.00 0.00 4.16
685 686 1.080705 CGAACTCCCGACCTCACAC 60.081 63.158 0.00 0.00 0.00 3.82
686 687 1.228337 TCGAACTCCCGACCTCACA 60.228 57.895 0.00 0.00 33.14 3.58
687 688 3.677527 TCGAACTCCCGACCTCAC 58.322 61.111 0.00 0.00 33.14 3.51
693 694 2.197605 TGTGCAGTCGAACTCCCGA 61.198 57.895 0.00 0.00 36.06 5.14
694 695 2.022129 GTGTGCAGTCGAACTCCCG 61.022 63.158 0.00 0.00 0.00 5.14
695 696 1.668151 GGTGTGCAGTCGAACTCCC 60.668 63.158 0.00 0.00 0.00 4.30
696 697 0.946221 CTGGTGTGCAGTCGAACTCC 60.946 60.000 0.00 0.00 0.00 3.85
697 698 1.560860 GCTGGTGTGCAGTCGAACTC 61.561 60.000 0.00 0.00 0.00 3.01
698 699 1.595382 GCTGGTGTGCAGTCGAACT 60.595 57.895 0.00 0.00 0.00 3.01
699 700 2.939022 GCTGGTGTGCAGTCGAAC 59.061 61.111 0.00 0.00 0.00 3.95
700 701 2.661537 CGCTGGTGTGCAGTCGAA 60.662 61.111 0.00 0.00 0.00 3.71
708 709 4.558470 CACAAAATTATTAGCGCTGGTGTG 59.442 41.667 22.90 16.55 0.00 3.82
709 710 4.457603 TCACAAAATTATTAGCGCTGGTGT 59.542 37.500 22.90 9.02 0.00 4.16
710 711 4.793216 GTCACAAAATTATTAGCGCTGGTG 59.207 41.667 22.90 13.16 0.00 4.17
711 712 4.457603 TGTCACAAAATTATTAGCGCTGGT 59.542 37.500 22.90 11.10 0.00 4.00
712 713 4.793216 GTGTCACAAAATTATTAGCGCTGG 59.207 41.667 22.90 0.39 0.00 4.85
713 714 5.631026 AGTGTCACAAAATTATTAGCGCTG 58.369 37.500 22.90 2.54 0.00 5.18
714 715 5.880054 AGTGTCACAAAATTATTAGCGCT 57.120 34.783 17.26 17.26 0.00 5.92
715 716 6.927933 AAAGTGTCACAAAATTATTAGCGC 57.072 33.333 0.00 0.00 0.00 5.92
716 717 8.500837 TGAAAAGTGTCACAAAATTATTAGCG 57.499 30.769 5.62 0.00 0.00 4.26
720 721 8.977505 CCGAATGAAAAGTGTCACAAAATTATT 58.022 29.630 5.62 0.00 0.00 1.40
721 722 8.141268 ACCGAATGAAAAGTGTCACAAAATTAT 58.859 29.630 5.62 0.00 0.00 1.28
722 723 7.433719 CACCGAATGAAAAGTGTCACAAAATTA 59.566 33.333 5.62 0.00 0.00 1.40
723 724 6.255453 CACCGAATGAAAAGTGTCACAAAATT 59.745 34.615 5.62 0.00 0.00 1.82
724 725 5.748152 CACCGAATGAAAAGTGTCACAAAAT 59.252 36.000 5.62 0.00 0.00 1.82
725 726 5.098893 CACCGAATGAAAAGTGTCACAAAA 58.901 37.500 5.62 0.00 0.00 2.44
726 727 4.439426 CCACCGAATGAAAAGTGTCACAAA 60.439 41.667 5.62 0.00 0.00 2.83
727 728 3.066064 CCACCGAATGAAAAGTGTCACAA 59.934 43.478 5.62 0.00 0.00 3.33
728 729 2.616376 CCACCGAATGAAAAGTGTCACA 59.384 45.455 5.62 0.00 0.00 3.58
729 730 2.604614 GCCACCGAATGAAAAGTGTCAC 60.605 50.000 0.00 0.00 0.00 3.67
730 731 1.606668 GCCACCGAATGAAAAGTGTCA 59.393 47.619 0.00 0.00 0.00 3.58
731 732 1.606668 TGCCACCGAATGAAAAGTGTC 59.393 47.619 0.00 0.00 0.00 3.67
732 733 1.608590 CTGCCACCGAATGAAAAGTGT 59.391 47.619 0.00 0.00 0.00 3.55
733 734 1.068333 CCTGCCACCGAATGAAAAGTG 60.068 52.381 0.00 0.00 0.00 3.16
734 735 1.247567 CCTGCCACCGAATGAAAAGT 58.752 50.000 0.00 0.00 0.00 2.66
735 736 1.200020 GACCTGCCACCGAATGAAAAG 59.800 52.381 0.00 0.00 0.00 2.27
736 737 1.243902 GACCTGCCACCGAATGAAAA 58.756 50.000 0.00 0.00 0.00 2.29
737 738 0.608035 GGACCTGCCACCGAATGAAA 60.608 55.000 0.00 0.00 36.34 2.69
738 739 1.002624 GGACCTGCCACCGAATGAA 60.003 57.895 0.00 0.00 36.34 2.57
739 740 2.220586 TGGACCTGCCACCGAATGA 61.221 57.895 0.00 0.00 43.33 2.57
740 741 2.350895 TGGACCTGCCACCGAATG 59.649 61.111 0.00 0.00 43.33 2.67
748 749 0.529378 CTTTGCTTCATGGACCTGCC 59.471 55.000 0.00 0.00 37.10 4.85
749 750 0.529378 CCTTTGCTTCATGGACCTGC 59.471 55.000 0.00 0.00 0.00 4.85
750 751 1.180029 CCCTTTGCTTCATGGACCTG 58.820 55.000 0.00 0.00 0.00 4.00
751 752 0.779997 ACCCTTTGCTTCATGGACCT 59.220 50.000 0.00 0.00 0.00 3.85
752 753 1.177401 GACCCTTTGCTTCATGGACC 58.823 55.000 0.00 0.00 0.00 4.46
753 754 1.177401 GGACCCTTTGCTTCATGGAC 58.823 55.000 0.00 0.00 0.00 4.02
754 755 0.039618 GGGACCCTTTGCTTCATGGA 59.960 55.000 2.09 0.00 0.00 3.41
755 756 1.315257 CGGGACCCTTTGCTTCATGG 61.315 60.000 9.41 0.00 0.00 3.66
756 757 0.609131 ACGGGACCCTTTGCTTCATG 60.609 55.000 9.41 0.00 0.00 3.07
757 758 0.988832 TACGGGACCCTTTGCTTCAT 59.011 50.000 9.41 0.00 0.00 2.57
758 759 0.323629 CTACGGGACCCTTTGCTTCA 59.676 55.000 9.41 0.00 0.00 3.02
759 760 0.392595 CCTACGGGACCCTTTGCTTC 60.393 60.000 9.41 0.00 33.58 3.86
760 761 1.683441 CCTACGGGACCCTTTGCTT 59.317 57.895 9.41 0.00 33.58 3.91
761 762 3.400188 CCTACGGGACCCTTTGCT 58.600 61.111 9.41 0.00 33.58 3.91
770 771 3.789441 GGATCCTTCCACCCTACGGGA 62.789 61.905 3.84 0.00 43.14 5.14
771 772 1.408453 GGATCCTTCCACCCTACGGG 61.408 65.000 3.84 0.00 42.12 5.28
772 773 1.408453 GGGATCCTTCCACCCTACGG 61.408 65.000 12.58 0.00 44.60 4.02
773 774 1.745320 CGGGATCCTTCCACCCTACG 61.745 65.000 12.58 0.00 44.60 3.51
774 775 0.690077 ACGGGATCCTTCCACCCTAC 60.690 60.000 12.58 0.00 44.60 3.18
775 776 0.935942 TACGGGATCCTTCCACCCTA 59.064 55.000 12.58 0.00 44.60 3.53
776 777 0.398664 CTACGGGATCCTTCCACCCT 60.399 60.000 12.58 0.00 44.60 4.34
777 778 1.408453 CCTACGGGATCCTTCCACCC 61.408 65.000 12.58 0.00 44.60 4.61
778 779 2.134092 CCTACGGGATCCTTCCACC 58.866 63.158 12.58 0.00 44.60 4.61
790 791 3.145551 CGGACCTCCACCCTACGG 61.146 72.222 0.00 0.00 35.14 4.02
791 792 2.362120 ACGGACCTCCACCCTACG 60.362 66.667 0.00 0.00 35.14 3.51
792 793 2.056815 GGACGGACCTCCACCCTAC 61.057 68.421 5.39 0.00 35.14 3.18
793 794 2.361771 GGACGGACCTCCACCCTA 59.638 66.667 5.39 0.00 35.14 3.53
794 795 4.716977 GGGACGGACCTCCACCCT 62.717 72.222 13.47 0.00 43.98 4.34
865 866 2.191513 CGAAGGATAGGGACGCCGA 61.192 63.158 0.00 0.00 0.00 5.54
898 899 1.004715 GGAGATCTCGACGAGAACGAC 60.005 57.143 29.68 23.09 42.27 4.34
899 900 1.134759 AGGAGATCTCGACGAGAACGA 60.135 52.381 29.68 9.30 42.27 3.85
903 904 0.249531 CGGAGGAGATCTCGACGAGA 60.250 60.000 28.36 28.36 43.34 4.04
978 979 2.534011 TGGGTTGGGATGGGCTCA 60.534 61.111 0.00 0.00 0.00 4.26
981 982 3.577334 TTCGTGGGTTGGGATGGGC 62.577 63.158 0.00 0.00 0.00 5.36
997 998 2.240612 ATCGCGCGAAAGGCTGTTTC 62.241 55.000 38.07 2.92 40.44 2.78
1015 1016 1.471829 TATGATCGCACGCCCCAGAT 61.472 55.000 0.00 0.00 0.00 2.90
1032 1033 4.202493 ACGTCTAGGGTTTTGGTGGTTTAT 60.202 41.667 0.00 0.00 0.00 1.40
1059 1060 6.178324 TCTTCTCCATCTTCGTAGTTGTCTA 58.822 40.000 0.33 0.00 0.00 2.59
1065 1066 4.098654 CACCATCTTCTCCATCTTCGTAGT 59.901 45.833 0.00 0.00 0.00 2.73
1068 1069 2.169352 CCACCATCTTCTCCATCTTCGT 59.831 50.000 0.00 0.00 0.00 3.85
1069 1070 2.484417 CCCACCATCTTCTCCATCTTCG 60.484 54.545 0.00 0.00 0.00 3.79
1082 1083 4.746309 TGCAGCAGCCCCACCATC 62.746 66.667 0.00 0.00 41.13 3.51
1087 1088 4.666253 GGTTCTGCAGCAGCCCCA 62.666 66.667 18.43 0.00 41.13 4.96
1121 1343 3.014110 TGATCTTTACCCCCTTCCTCTCT 59.986 47.826 0.00 0.00 0.00 3.10
1133 1355 3.648009 CGCATCTCTCCTGATCTTTACC 58.352 50.000 0.00 0.00 0.00 2.85
1157 1379 0.984995 CCGTCTCCTTCCCTTTTCCT 59.015 55.000 0.00 0.00 0.00 3.36
1320 1542 2.318908 CTTCCTCATCTCCCTCTCCTG 58.681 57.143 0.00 0.00 0.00 3.86
1333 1555 1.082766 TCATCCAGGGCCTTCCTCA 59.917 57.895 1.32 0.00 46.12 3.86
1377 1599 1.444933 AACTCCTCCATCACCACCAA 58.555 50.000 0.00 0.00 0.00 3.67
1416 1638 9.753674 TGGTATTTCCTTGAAGTCATAATCTTT 57.246 29.630 0.00 0.00 37.07 2.52
1448 1670 3.772572 GTGGCAACCCATAAACCCTAATT 59.227 43.478 0.00 0.00 44.51 1.40
1470 1692 4.102210 AGTGTCTTCATCCATATCACCCAG 59.898 45.833 0.00 0.00 0.00 4.45
1475 1697 7.062957 TCTCACTAGTGTCTTCATCCATATCA 58.937 38.462 21.99 0.00 0.00 2.15
1494 1716 4.020751 CACCATATTCCCGATCATCTCACT 60.021 45.833 0.00 0.00 0.00 3.41
1555 1777 5.072872 ACTCTGAGATATTTGCCAATAGCCT 59.927 40.000 12.44 0.00 42.71 4.58
1559 1781 6.994496 CCTTCACTCTGAGATATTTGCCAATA 59.006 38.462 12.44 0.00 0.00 1.90
1588 1810 0.486879 TGGCTTCCCAATTTGGAGGT 59.513 50.000 17.24 0.00 40.96 3.85
1684 1906 2.022718 ACTCTTCTCTGGCCTCTTGT 57.977 50.000 3.32 0.00 0.00 3.16
1703 1925 3.374318 GGTCCTTCTCCTCCTCATCCTTA 60.374 52.174 0.00 0.00 0.00 2.69
1727 1949 5.596836 ATTCATATTCAAAACGGCACCAT 57.403 34.783 0.00 0.00 0.00 3.55
1748 1970 6.784969 AGATGTAGCAAAGATCTGGTAGGTAT 59.215 38.462 0.00 0.00 36.86 2.73
1761 1983 5.347093 CCAGCATATCGTAGATGTAGCAAAG 59.653 44.000 0.00 0.00 45.12 2.77
1766 1988 3.429547 GGCCCAGCATATCGTAGATGTAG 60.430 52.174 0.00 0.00 45.12 2.74
1774 1996 1.635817 AAGGTGGCCCAGCATATCGT 61.636 55.000 16.48 0.00 33.95 3.73
1777 1999 0.106519 GTCAAGGTGGCCCAGCATAT 60.107 55.000 16.48 0.00 33.95 1.78
1833 2055 2.708861 TCATCCACCTACCAAACTGTGT 59.291 45.455 0.00 0.00 0.00 3.72
1861 2083 2.202987 CTCTCCTCACGCCCATGC 60.203 66.667 0.00 0.00 0.00 4.06
1869 2091 2.363172 GCACCCCTCCTCTCCTCAC 61.363 68.421 0.00 0.00 0.00 3.51
1889 2111 3.112205 GCTCCGCCATGTCCCATCT 62.112 63.158 0.00 0.00 0.00 2.90
1935 2157 3.840437 GCGCCCAAAGCCATATGA 58.160 55.556 3.65 0.00 38.78 2.15
1970 2192 3.118000 TCCTCCAAGATAGACTGTCGCTA 60.118 47.826 1.52 0.00 0.00 4.26
1997 2219 3.721706 CCACCAGACCTGCTCCCC 61.722 72.222 0.00 0.00 0.00 4.81
2009 2231 4.974438 ACTTCGCCCCCTCCACCA 62.974 66.667 0.00 0.00 0.00 4.17
2012 2234 4.649705 TCCACTTCGCCCCCTCCA 62.650 66.667 0.00 0.00 0.00 3.86
2035 2257 1.982938 GGGCTAGTCACCTCCGTGT 60.983 63.158 0.00 0.00 41.09 4.49
2076 2298 1.341778 CCTCACGGTACCCTCCTTACT 60.342 57.143 6.25 0.00 0.00 2.24
2119 2341 1.622607 CCCCTCCTGCACATCCGTAA 61.623 60.000 0.00 0.00 0.00 3.18
2163 2385 3.303938 TCATTGCACCCTTTTCCTGAAA 58.696 40.909 0.00 0.00 0.00 2.69
2165 2387 2.673775 TCATTGCACCCTTTTCCTGA 57.326 45.000 0.00 0.00 0.00 3.86
2180 2402 1.284841 CCCCAGCCTCCTCCTTCATT 61.285 60.000 0.00 0.00 0.00 2.57
2191 2413 0.028642 AACCTCCATATCCCCAGCCT 60.029 55.000 0.00 0.00 0.00 4.58
2200 2422 1.544093 CCAGCGCATCAACCTCCATAT 60.544 52.381 11.47 0.00 0.00 1.78
2257 2479 1.069978 TCTGCGTCATGGTCAACTTCA 59.930 47.619 0.00 0.00 0.00 3.02
2262 2484 5.527214 CCTTATATTTCTGCGTCATGGTCAA 59.473 40.000 0.00 0.00 0.00 3.18
2280 2502 1.219724 ACCCTCCTTCTCGCCCTTATA 59.780 52.381 0.00 0.00 0.00 0.98
2288 2510 3.574826 CCCTATCTTTACCCTCCTTCTCG 59.425 52.174 0.00 0.00 0.00 4.04
2296 2518 3.759119 GCCTAGCTCCCTATCTTTACCCT 60.759 52.174 0.00 0.00 0.00 4.34
2297 2519 2.568062 GCCTAGCTCCCTATCTTTACCC 59.432 54.545 0.00 0.00 0.00 3.69
2314 2536 1.846439 CCCTCCTCCTGAATTTGCCTA 59.154 52.381 0.00 0.00 0.00 3.93
2337 2559 2.835431 ATCCTCCCTCCGTGCTCG 60.835 66.667 0.14 0.14 0.00 5.03
2347 2569 1.152008 CCCCCTCCTACATCCTCCC 60.152 68.421 0.00 0.00 0.00 4.30
2369 2591 2.448961 CTCCCTCCTCTATCCTCCTGAA 59.551 54.545 0.00 0.00 0.00 3.02
2381 2603 2.838637 TCTCTTCCTTCTCCCTCCTC 57.161 55.000 0.00 0.00 0.00 3.71
2427 2649 0.332972 TAGCTGACCTGCTCTCCTCA 59.667 55.000 0.00 0.00 42.97 3.86
2459 2681 1.411977 CCTCAATCGTCAGCTCCATCT 59.588 52.381 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.